53 commits

Author	SHA1	Message	Date
Pia Leonie Jones Petrak	1d6f7f65c0	Feature/corr matrix and inverse cov matrix as input in least squares function for correlated fits (#223) ... * feat: corr_matrix kwargs as input for least squares fit * feat/tests: inverse covariance matrix and correlation matrix kwargs as input for least squares function * feat/tests/example: reduced new kwargs to 'inv_chol_cov_matrix' and outsourced the inversion & cholesky decomposition of the covariance matrix (function 'invert_corr_cov_cholesky(corr, covdiag)') * tests: added tests for inv_chol_cov_matrix kwarg for the case of combined fits * fix: renamed covdiag to inverrdiag needed for the cholesky decomposition and corrected its documentation * examples: added an example of a correlated combined fit to the least_squares documentation * feat/tests/fix(of typos): added function 'sort_corr()' (and a test of it) to sort correlation matrix according to a list of alphabetically sorted keys * docs: added more elaborate documentation/example of sort_corr(), fixed typos in documentation of invert_corr_cov_cholesky()	2024-09-13 08:35:10 +02:00
Fabian Joswig	fb17a46eb9	[docs] latex detection in example notebooks improved.	2023-11-22 17:53:58 +01:00
Fabian Joswig	01ef97ffdf	docs: example 5 validation updated.	2023-07-20 12:20:06 +01:00
Fabian Joswig	1e438356fd	Vectorized gamma_method (#207) ... * feat: vectorized gamma_method function added. * feat: vectorized gamma method generalized to also work on other objects like Corr or Fit_result. * feat: alias gamma_method for vectorized gamma_method added. * docs: example 5 updated to include vectorized gamma_method. * docs: output of example 5 updated.	2023-07-19 12:13:20 +01:00
Fabian Joswig	e41f869d18	docs: version guard added to combined fit example.	2023-03-09 13:38:51 +00:00
Fabian Joswig	3236ba54e7	Merge pull request #134 from PiaLJP/develop ... sample implementation of a (uncorrelated) combined fit	2023-02-02 15:09:11 +00:00
Fabian Joswig	8cc9c835f7	docs: remove deprecated call to checkdep_usetex.	2023-01-26 17:16:17 +00:00
Fabian Joswig	615795dc5b	docs: gm alias added to basic example, hyperlink fixed in documentation.	2023-01-24 13:06:14 +00:00
Fabian Joswig	49109dac58	docs: Explanation about ensemble names also made more explicit in ... examples.	2023-01-24 13:01:58 +00:00
Fabian Joswig	32dcb7438c	build: combined fit example notebook renamed.	2022-12-21 12:58:00 +01:00
ppetrak	80c8a0f979	feat: added (default) method Levenberg-Marquardt, test added	2022-12-20 15:26:13 +01:00
ppetrak	c14d162f7e	clean-up	2022-12-19 14:09:24 +01:00
ppetrak	3d6ec7b397	fix: flak8 & pytest	2022-12-19 14:03:45 +01:00
ppetrak	500c5234cf	clean-up	2022-12-16 18:55:43 +01:00
ppetrak	9a05fc916a	incorparated (uncorrelated) combined fits in fits.least_squares	2022-12-16 18:47:25 +01:00
ppetrak	78c7c32f1c	(temporary) least squares function for combined fits with dictionaries (+ example)	2022-12-14 15:09:42 +01:00
Fabian Joswig	6a57264868	docs: data management example refined.	2022-09-29 17:11:24 +01:00
Fabian Joswig	9a7f5679c9	docs: first version of data management example added.	2022-09-29 09:46:15 +01:00
Fabian Joswig	cf7919c936	docs: first two examples extended.	2022-09-29 09:22:41 +01:00
Fabian Joswig	62814c1fff	docs: typos in example notebooks corrected.	2022-07-21 13:29:27 +01:00
Fabian Joswig	1054f749e9	docs: check for latex availability added to examples.	2022-05-20 11:00:52 +01:00
Fabian Joswig	cfc21a2a5e	docs: GEVP example updated to new syntax.	2022-05-16 12:06:33 +01:00
Fabian Joswig	9e982bc025	docs: examples fixed	2022-05-14 11:46:57 +01:00
Fabian Joswig	a28ef38f00	examples: Example 06 updated to work with new default options for GEVP	2022-05-03 10:44:03 +01:00
Simon Kuberski	5e1724d7e0	Adapted json_schema	2022-02-22 09:31:01 +01:00
JanNeuendorf	951233ab79	Fixed bug in Corr._init_() , added auto_gamma argument to plateaus and updated the examples.	2022-02-18 09:46:07 +01:00
Simon Kuberski	ed8274d7c4	Added JSON schema for validation and documentation purposes	2022-02-16 14:27:40 +01:00
Fabian Joswig	891f77bcef	docs: typo in gevp example fixed, additional call to gamma_method ... added.	2022-02-15 13:40:50 +00:00
Fabian Joswig	199df2b344	docs: correlator examples updated with additional calls to gamma_method	2022-02-15 13:38:22 +00:00
Fabian Joswig	1196935e4e	refactor!: Renamed methods smearing into index and smearing_symmetric ... into matrix_symmetric	2022-02-08 14:06:04 +00:00
Fabian Joswig	fbb98e05f6	docs: examples for the gevp moved from correlator example to independent ... file. Docstring of Corr.smearing added.	2022-01-28 15:54:08 +00:00
Fabian Joswig	dc35690c3e	feat!: correlator json output can now handle gaps in the data. Tags of ... correlators written with the previous version will have the prefix X|Y| which contain the padding. Paddings written with previous versions will be lost and have to be restored by the user.	2022-01-27 14:01:22 +00:00
JanNeuendorf	b1af4ae6e6	An update to the documentation for the correlator class.	2022-01-27 12:53:23 +01:00
Fabian Joswig	9b52a9a615	feat!: dump methods now export to the json.gz format by default. Pickle ... format can be chosen via parameter.	2022-01-19 10:43:18 +00:00
Fabian Joswig	93bc4c3819	docs: padding parameter in example 4 fixed	2022-01-18 14:53:19 +00:00
Fabian Joswig	d778a3b238	feat!: merged the parameters padding_front and padding_back of Corr into ... one parameter padding	2022-01-18 14:50:18 +00:00
Fabian Joswig	af95667ffb	feat: example 3 improved	2022-01-06 18:02:04 +01:00
Fabian Joswig	2e72b6da5e	feat: example 2-4 improved, figures updated with changes in Corr.show	2022-01-06 17:51:50 +01:00
Fabian Joswig	f149eea412	feat: example 2 improved	2022-01-06 17:38:12 +01:00
Fabian Joswig	b00fab4838	docs: removed hint about not working examples from README	2022-01-06 12:16:36 +01:00
Fabian Joswig	615411337c	feat: example 5 updated to new version	2022-01-06 12:15:26 +01:00
Fabian Joswig	7b3d7a76a5	feat: examples 3 & 4 updated to new version	2022-01-06 12:07:19 +01:00
Fabian Joswig	5f691e096a	feat: example 3 and accompanying data files updated	2022-01-06 11:50:03 +01:00
Fabian Joswig	52a2c34907	feat: example 2 and accompanying data file updated	2022-01-06 11:16:00 +01:00
Fabian Joswig	2af19c9c8e	feat: example 01 updated	2022-01-06 10:58:49 +01:00
Fabian Joswig	1d74e8c4f4	Examples updated, minor bug fixes	2021-10-11 18:31:02 +01:00
Fabian Joswig	cf2b595bd0	Large Example file removed	2021-10-11 15:57:24 +01:00
Fabian Joswig	1ea8655684	docstring added to correlators.show	2021-09-27 11:45:06 +01:00
fjosw	ed0db69b67	Typos corrected in examples	2021-01-29 12:13:30 +01:00
fjosw	c09a56b9c0	correlators module cleaned up, GUI_range_finder commented out for now	2021-01-29 11:52:36 +01:00