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Author	SHA1	Message	Date
Fabian Joswig	86c060e79f	ci: python 3.7 removed from ci.	2023-05-21 17:11:38 +01:00
Fabian Joswig	21def4aad1	build: python 3.7 removed from setup.py	2023-05-21 17:11:14 +01:00
Fabian Joswig	a443b4bb17	build: version bumped to 2.9.0-dev.	2023-05-21 17:10:40 +01:00
Fabian Joswig	dfe7de3a03	build: version bumped to 2.8.0	2023-05-21 17:06:09 +01:00
Fabian Joswig	889cc327fc	docs: CHANGELOG updated.	2023-05-21 17:05:59 +01:00
Fabian Joswig	e9e02749a0	fix: dobs import added to input/__init__.py (#181)	2023-05-21 16:56:56 +01:00
s-kuberski	81e4f37934	Restored JSON output of dicts with non-string keys (#179) ... * Restored JSON output of dicts with non-string keys * Use numpy.integer instead of deprecated numpy.int	2023-05-19 14:58:56 +01:00
Justus Kuhlmann	a5b6f69160	Slightly better Typechecking when exporting to SQL (#174) ... * corret type clause * add tests, changes in create_json_string * create json-string now gives back None * revert changes * fix panda sql export * add SQL test * fixed None type export for csv and sql.gz * move None parsing to json io * alter regex * revert changes * only replace None with empty str when necessary * fixed deserialze_df for python 3.7 * add more tesets * fix case where gz was ignored * hand voer gz explicitly * replace nan by None in non-Obs columns * moved warning to csv export, mroe tests * only values able to be nan are put in np.isnan() * added python float for warning	2023-05-18 17:11:52 +01:00
Fabian Joswig	b75aa741a9	feat: color and zorder for prange indicator in Corr.show added. (#178)	2023-05-18 17:06:15 +01:00
s-kuberski	3198088f9c	Feat/flow (#176) ... * fix: String conversion of Obs can now handle a dvalue that is NaN or inf * Feat: Added extraction of w0/a from openQCD files * Removed unnecessary round in w0 routine * Improved error handling in fit_t0 * Allowed to change the reference flow time in t0 and w0 determinations. * Added doc string to fit_t0	2023-05-16 18:29:13 +01:00
Justus Kuhlmann	5155effbbf	Fix/sort names (#177) ... * cosmetic fix in sort_names * bug fix, more tests	2023-05-16 18:28:32 +01:00
s-kuberski	15d07de87f	fix: String conversion of Obs can now handle a dvalue that is NaN or inf (#173)	2023-05-03 16:30:59 +02:00
Fabian Joswig	ccd911fd17	docs: citation info in documentation updated.	2023-04-29 11:09:05 +01:00
Fabian Joswig	0f0dcf47d9	docs: citation file corrected.	2023-04-29 10:59:45 +01:00
Fabian Joswig	9bc9910f27	docs: citation file updated.	2023-04-29 10:56:23 +01:00
s-kuberski	65a9128a7d	Fix/merge idx (#172) ... * Fix: Corrected merging of idls * Fix: Computation of drho in cases where tau_int is large compared to the chain length * Removed unnecessary imports * Refactor list comparisons in obs.py	2023-04-28 18:14:51 +01:00
Fabian Joswig	1184a0fe76	t0 extractions for new Hadrons module (#171) ... * feat: first version of read flow observables for new hadrons module. * feat: refactored t0 fit in seperate function and added extract_t0_hd5 to hadrons submodule.	2023-04-25 08:25:33 +01:00
Fabian Joswig	be061fdc23	Feat/str format (#170) ... * feat: _format_uncertainty now accepts a significance. * feat: __format__ now accepts significance. * feat: explicit + sign added to format. * fix: - option removed from format specifier. * feat: space format added.	2023-04-20 17:31:37 +01:00
s-kuberski	a214465413	Fix/gaps (#169) ... * fix: Fixed range detection in gamma_method * Corrected test in dobsio * Changed expansion paradigm in gamma_method * Extended tests * Updated docstrings * Removed unnecessary intermediate variable * Removed unnecessary code * Fixed previously introduced bug in output in obs.details() * Fixed previously introduced bug in window determination * New criterion for matching gapped replica, fixed determination of w_max and fixed tau_exp analysis with gaps * tests: split up consistency test for gamma method. --------- Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>	2023-04-20 17:30:57 +01:00
Fabian Joswig	edcb4de8aa	docs: DOI badge corrected.	2023-04-14 15:41:29 +01:00
Fabian Joswig	05d47a2540	docs: DOI badge added.	2023-04-14 15:40:00 +01:00
Justus Kuhlmann	9d67738b32	extended extract_t0 by postfix argument, default stays .ms (#168) ... * extended extract_t0 by postfix argument, default stays .ms * linting	2023-03-24 11:10:26 +01:00
Fabian Joswig	af364cfd09	build: version bumped to 2.8.0-dev	2023-03-21 10:47:25 +01:00
Fabian Joswig	857540dbf8	build: version number bumped to 2.7.0	2023-03-21 10:29:03 +01:00
Fabian Joswig	64e8e4975e	docs: CHANGELOG updated.	2023-03-21 10:28:15 +01:00
Fabian Joswig	500690b266	build: .hypothesis added to gitignore.	2023-03-17 17:56:40 +00:00
nils-ht	2363b755dd	NHT changes plots combined fit (#166) ... * NHT changes plots combined fit * feat: Exception for illegal combination added and test fixed. --------- Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>	2023-03-17 13:52:07 +00:00
Justus Kuhlmann	83204ce794	fixed appended mode reading (#165)	2023-03-16 13:12:03 +00:00
Justus Kuhlmann	41fec09816	Impr/fix refactor sfcf read (#164) ... * refactor read_sfcf * adding tests for find_corr and read_compact_file * add necessary broken data for tests * fixed appended mode reading * factored out sort_names and find_files * now also using sort_files in sfcf.py * edited tests to fit with new structure * added find_files function * shifted helpfunctions to bottom of file * removed some debug lines * linting * Fixed requested changes, added silent mode * added Exception if correlator is not found by read_append_rep * use tmp_path fixture * linting silent keyword * try to fix testing for a_bb * tests: Exception testing in test_find_corr made more explicit. --------- Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>	2023-03-15 17:46:12 +00:00
Fabian Joswig	991199a680	docs: README updated.	2023-03-14 14:27:51 +00:00
Fabian Joswig	90c9ce9c73	refactor: unnecessary line in fit parameter detection removed. ... Iterator variable renamed.	2023-03-14 09:50:35 +00:00
Fabian Joswig	5255f87d7d	docs: image resized.	2023-03-13 16:34:01 +00:00
Fabian Joswig	23fd00b4c2	docs: image resized.	2023-03-13 16:25:50 +00:00
Fabian Joswig	8530353d32	docs: xkcd 927 added to documentation of json.gz format.	2023-03-13 16:20:25 +00:00
Fabian Joswig	08197efe0f	docs: moved installation info for develop branch to documentation.	2023-03-13 13:30:43 +00:00
Fabian Joswig	a2a64146b0	docs: installation info also added to start page of the documentation.	2023-03-13 13:27:57 +00:00
Fabian Joswig	34981b6102	docs: conda-forge installation added to README.	2023-03-13 13:25:24 +00:00
Fabian Joswig	a1d6b95e9a	build: bug report default title changed again.	2023-03-11 21:38:29 +00:00
Fabian Joswig	031b048fa3	build: bug report default title changed.	2023-03-11 21:35:34 +00:00
Fabian Joswig	bafa6ce38d	feat: system added to print_config.	2023-03-11 21:31:21 +00:00
Fabian Joswig	caef8af988	build: bug report issue template added.	2023-03-11 21:30:14 +00:00
Fabian Joswig	0044f90315	feat: print_config moved to misc.	2023-03-11 21:22:03 +00:00
Fabian Joswig	8ed5ce9569	feat: print_config function added to help with debugging.	2023-03-11 21:17:09 +00:00
Fabian Joswig	d8fb683262	docs: CONTRIBUTING.md extended.	2023-03-10 14:37:50 +00:00
Fabian Joswig	fe0f80b8c3	docs: README and CONTRIBUTING updated.	2023-03-10 14:25:17 +00:00
Fabian Joswig	3c942b380d	Serialize list of Obs in pandas.to_sql (#162) ... * feat: Added serialization of list of Obs in pandas.to_sql. * tests: test for list of Obs to sql added. * feat: auto_gamma functionality added for deserialization of lists of Obs.	2023-03-10 14:17:20 +00:00
Fabian Joswig	a7a098b861	fix: chisquare, dof and p-value also calculated when dof is 0. Test for ... dof and chisquare_over_dof added.	2023-03-09 15:32:27 +00:00
Fabian Joswig	06ba2015be	tests: test for different methods in prior fit added.	2023-03-09 15:00:52 +00:00
Fabian Joswig	99a1033703	refactor: refactored construction of prior Obs in least_squares.	2023-03-09 14:25:37 +00:00
Fabian Joswig	e41f869d18	docs: version guard added to combined fit example.	2023-03-09 13:38:51 +00:00