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fixed appended mode reading (#165)

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Justus Kuhlmann 2023-03-16 14:12:03 +01:00 • committed by GitHub
parent 41fec09816
commit 83204ce794
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2 changed files with 22 additions and 6 deletions
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2
pyerrors/input/sfcf.py
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@ -210,7 +210,7 @@ def read_sfcf(path, prefix, name, quarks='.*', corr_type='bi', noffset=0, wf=0,
for exc in ls:
if not fnmatch.fnmatch(exc, prefix + '*.' + name):
ls = list(set(ls) - set([exc]))
ls.sort(key=lambda x: int(re.findall(r'\d+', x)[-1]))
ls = sort_names(ls)
pattern = _make_pattern(version, name, noffset, wf, wf2, b2b, quarks)
deltas = []
for rep, file in enumerate(ls):

26
tests/sfcf_in_test.py
View file

@ -25,6 +25,10 @@ def build_test_environment(path, env_type, cfgs, reps):
os.mkdir(path + "/data_c/data_c_r"+str(i))
for j in range(1,cfgs+1):
shutil.copy(path + "/data_c/data_c_r0/data_c_r0_n1",path + "/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
elif env_type == "a":
for i in range(1,reps):
for corr in ["f_1", "f_A", "F_V0"]:
shutil.copy(path + "/data_a/data_a_r0." + corr, path + "/data_a/data_a_r" + str(i) + "." + corr)
def test_o_bb(tmp_path):
@ -32,6 +36,7 @@ def test_o_bb(tmp_path):
f_1 = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "f_1",quarks="lquark lquark", wf = 0, wf2=0, version = "2.0", corr_type="bb")
print(f_1)
assert len(f_1) == 1
assert list(f_1[0].shape.keys()) == ["test_|r0","test_|r1","test_|r2"]
assert f_1[0].value == 351.1941525454502
def test_o_bi(tmp_path):
@ -39,6 +44,7 @@ def test_o_bi(tmp_path):
f_A = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "f_A",quarks="lquark lquark", wf = 0, version = "2.0")
print(f_A)
assert len(f_A) == 3
assert list(f_A[0].shape.keys()) == ["test_|r0","test_|r1","test_|r2"]
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.025094911185185
@ -48,6 +54,7 @@ def test_o_bib(tmp_path):
f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0", corr_type="bib")
print(f_V0)
assert len(f_V0) == 3
assert list(f_V0[0].shape.keys()) == ["test_|r0","test_|r1","test_|r2"]
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005
@ -57,6 +64,7 @@ def test_c_bb(tmp_path):
f_1 = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0c", corr_type="bb")
print(f_1)
assert len(f_1) == 1
assert list(f_1[0].shape.keys()) == ["data_c_|r0","data_c_|r1","data_c_|r2"]
assert f_1[0].value == 351.1941525454502
def test_c_bi(tmp_path):
@ -64,6 +72,7 @@ def test_c_bi(tmp_path):
f_A = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "f_A", quarks="lquark lquark", wf = 0, version = "2.0c")
print(f_A)
assert len(f_A) == 3
assert list(f_A[0].shape.keys()) == ["data_c_|r0","data_c_|r1","data_c_|r2"]
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.025094911185185
@ -73,33 +82,40 @@ def test_c_bib(tmp_path):
f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0c", corr_type="bib")
print(f_V0)
assert len(f_V0) == 3
assert list(f_V0[0].shape.keys()) == ["data_c_|r0","data_c_|r1","data_c_|r2"]
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005
def test_a_bb(tmp_path):
f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", corr_type="bb")
build_test_environment(str(tmp_path), "a",5,3)
f_1 = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", corr_type="bb")
print(f_1)
assert len(f_1) == 1
assert list(f_1[0].shape.keys()) == ["data_a_|r0","data_a_|r1","data_a_|r2"]
assert f_1[0].value == 351.1941525454502
def test_a_bi(tmp_path):
f_A = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
build_test_environment(str(tmp_path), "a",5,3)
f_A = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
print(f_A)
assert len(f_A) == 3
assert list(f_A[0].shape.keys()) == ["data_a_|r0","data_a_|r1","data_a_|r2"]
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.02509491118518
assert f_A[2].value == -41.025094911185185
def test_a_bib(tmp_path):
f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", corr_type="bib")
build_test_environment(str(tmp_path), "a",5,3)
f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", corr_type="bib")
print(f_V0)
assert len(f_V0) == 3
assert list(f_V0[0].shape.keys()) == ["data_a_|r0","data_a_|r1","data_a_|r2"]
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005
def test_find_corr(tmp_path):
def test_find_corr():
pattern = 'name ' + "f_A" + '\nquarks ' + "lquark lquark" + '\noffset ' + str(0) + '\nwf ' + str(0)
start_read, T = sfin._find_correlator("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1", "2.0c", pattern, False)
assert start_read == 21