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fixed appended mode reading (#165)
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parent
41fec09816
commit
83204ce794
2 changed files with 22 additions and 6 deletions
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@ -210,7 +210,7 @@ def read_sfcf(path, prefix, name, quarks='.*', corr_type='bi', noffset=0, wf=0,
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for exc in ls:
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if not fnmatch.fnmatch(exc, prefix + '*.' + name):
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ls = list(set(ls) - set([exc]))
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ls.sort(key=lambda x: int(re.findall(r'\d+', x)[-1]))
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ls = sort_names(ls)
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pattern = _make_pattern(version, name, noffset, wf, wf2, b2b, quarks)
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deltas = []
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for rep, file in enumerate(ls):
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@ -25,6 +25,10 @@ def build_test_environment(path, env_type, cfgs, reps):
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os.mkdir(path + "/data_c/data_c_r"+str(i))
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for j in range(1,cfgs+1):
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shutil.copy(path + "/data_c/data_c_r0/data_c_r0_n1",path + "/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
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elif env_type == "a":
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for i in range(1,reps):
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for corr in ["f_1", "f_A", "F_V0"]:
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shutil.copy(path + "/data_a/data_a_r0." + corr, path + "/data_a/data_a_r" + str(i) + "." + corr)
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def test_o_bb(tmp_path):
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@ -32,6 +36,7 @@ def test_o_bb(tmp_path):
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f_1 = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "f_1",quarks="lquark lquark", wf = 0, wf2=0, version = "2.0", corr_type="bb")
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print(f_1)
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assert len(f_1) == 1
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assert list(f_1[0].shape.keys()) == ["test_|r0","test_|r1","test_|r2"]
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assert f_1[0].value == 351.1941525454502
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def test_o_bi(tmp_path):
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@ -39,6 +44,7 @@ def test_o_bi(tmp_path):
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f_A = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "f_A",quarks="lquark lquark", wf = 0, version = "2.0")
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print(f_A)
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assert len(f_A) == 3
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assert list(f_A[0].shape.keys()) == ["test_|r0","test_|r1","test_|r2"]
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assert f_A[0].value == 65.4711887279723
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assert f_A[1].value == 1.0447210336915187
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assert f_A[2].value == -41.025094911185185
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@ -48,6 +54,7 @@ def test_o_bib(tmp_path):
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f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0", corr_type="bib")
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print(f_V0)
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assert len(f_V0) == 3
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assert list(f_V0[0].shape.keys()) == ["test_|r0","test_|r1","test_|r2"]
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assert f_V0[0] == 683.6776090085115
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assert f_V0[1] == 661.3188585582334
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assert f_V0[2] == 683.6776090081005
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@ -57,6 +64,7 @@ def test_c_bb(tmp_path):
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f_1 = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0c", corr_type="bb")
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print(f_1)
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assert len(f_1) == 1
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assert list(f_1[0].shape.keys()) == ["data_c_|r0","data_c_|r1","data_c_|r2"]
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assert f_1[0].value == 351.1941525454502
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def test_c_bi(tmp_path):
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@ -64,6 +72,7 @@ def test_c_bi(tmp_path):
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f_A = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "f_A", quarks="lquark lquark", wf = 0, version = "2.0c")
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print(f_A)
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assert len(f_A) == 3
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assert list(f_A[0].shape.keys()) == ["data_c_|r0","data_c_|r1","data_c_|r2"]
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assert f_A[0].value == 65.4711887279723
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assert f_A[1].value == 1.0447210336915187
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assert f_A[2].value == -41.025094911185185
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@ -73,33 +82,40 @@ def test_c_bib(tmp_path):
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f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0c", corr_type="bib")
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print(f_V0)
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assert len(f_V0) == 3
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assert list(f_V0[0].shape.keys()) == ["data_c_|r0","data_c_|r1","data_c_|r2"]
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assert f_V0[0] == 683.6776090085115
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assert f_V0[1] == 661.3188585582334
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assert f_V0[2] == 683.6776090081005
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def test_a_bb(tmp_path):
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f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", corr_type="bb")
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build_test_environment(str(tmp_path), "a",5,3)
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f_1 = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", corr_type="bb")
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print(f_1)
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assert len(f_1) == 1
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assert list(f_1[0].shape.keys()) == ["data_a_|r0","data_a_|r1","data_a_|r2"]
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assert f_1[0].value == 351.1941525454502
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def test_a_bi(tmp_path):
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f_A = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
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build_test_environment(str(tmp_path), "a",5,3)
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f_A = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
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print(f_A)
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assert len(f_A) == 3
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assert list(f_A[0].shape.keys()) == ["data_a_|r0","data_a_|r1","data_a_|r2"]
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assert f_A[0].value == 65.4711887279723
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assert f_A[1].value == 1.0447210336915187
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assert f_A[2].value == -41.02509491118518
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assert f_A[2].value == -41.025094911185185
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def test_a_bib(tmp_path):
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f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", corr_type="bib")
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build_test_environment(str(tmp_path), "a",5,3)
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f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", corr_type="bib")
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print(f_V0)
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assert len(f_V0) == 3
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assert list(f_V0[0].shape.keys()) == ["data_a_|r0","data_a_|r1","data_a_|r2"]
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assert f_V0[0] == 683.6776090085115
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assert f_V0[1] == 661.3188585582334
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assert f_V0[2] == 683.6776090081005
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def test_find_corr(tmp_path):
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def test_find_corr():
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pattern = 'name ' + "f_A" + '\nquarks ' + "lquark lquark" + '\noffset ' + str(0) + '\nwf ' + str(0)
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start_read, T = sfin._find_correlator("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1", "2.0c", pattern, False)
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assert start_read == 21
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