Error propagation and statistical analysis for Markov chain Monte Carlo simulations in lattice QCD and statistical mechanics using autograd
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Justus Kuhlmann 41fec09816
Impr/fix refactor sfcf read (#164)
* refactor read_sfcf

* adding tests for find_corr and read_compact_file

* add necessary broken data for tests

* fixed appended mode reading

* factored out sort_names and find_files

* now also using sort_files in sfcf.py

* edited tests to fit with new structure

* added find_files function

* shifted helpfunctions to bottom of file

* removed some debug lines

* linting

* Fixed requested changes, added silent mode

* added Exception if correlator is not found by read_append_rep

* use tmp_path fixture

* linting silent keyword

* try to fix testing for a_bb

* tests: Exception testing in test_find_corr made more explicit.

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Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>
2023-03-15 17:46:12 +00:00
.github build: bug report default title changed again. 2023-03-11 21:38:29 +00:00
examples docs: version guard added to combined fit example. 2023-03-09 13:38:51 +00:00
pyerrors Impr/fix refactor sfcf read (#164) 2023-03-15 17:46:12 +00:00
tests Impr/fix refactor sfcf read (#164) 2023-03-15 17:46:12 +00:00
.gitignore build: extract version number in setup.py from version.py 2022-06-14 12:02:43 +01:00
CHANGELOG.md docs: CHANGELOG updated. 2023-02-07 13:07:48 +00:00
CITATION.cff docs: CHANGELOG and CITATION file updated. 2022-10-13 12:08:54 +01:00
conftest.py tests: conftest.py added 2022-01-20 13:56:56 +00:00
CONTRIBUTING.md docs: CONTRIBUTING.md extended. 2023-03-10 14:37:50 +00:00
LICENSE Initial public release 2020-10-13 16:53:00 +02:00
pyproject.toml build: pyproject.toml added. 2022-08-01 16:43:19 +01:00
README.md docs: README updated. 2023-03-14 14:27:51 +00:00
setup.py build: minimal numpy version bumped to 1.21 as 1.20 runs out of support 2023-01-23 16:23:09 +00:00

flake8 pytest License: MIT arXiv

pyerrors

pyerrors is a python framework for error computation and propagation of Markov chain Monte Carlo data from lattice field theory and statistical mechanics simulations.

Installation

Install the most recent release using pip and pypi:

pip install pyerrors     # Fresh install
pip install -U pyerrors  # Update

Install the most recent release using conda and conda-forge:

conda install -c conda-forge pyerrors  # Fresh install
conda update -c conda-forge pyerrors   # Update

Contributing

We appreciate all contributions to the code, the documentation and the examples. If you want to get involved please have a look at our contribution guideline.