960 commits

Author	SHA1	Message	Date
Justus Kuhlmann	9d67738b32	extended extract_t0 by postfix argument, default stays .ms (#168) ... * extended extract_t0 by postfix argument, default stays .ms * linting	2023-03-24 11:10:26 +01:00
Fabian Joswig	af364cfd09	build: version bumped to 2.8.0-dev	2023-03-21 10:47:25 +01:00
Fabian Joswig	857540dbf8	build: version number bumped to 2.7.0	2023-03-21 10:29:03 +01:00
nils-ht	2363b755dd	NHT changes plots combined fit (#166) ... * NHT changes plots combined fit * feat: Exception for illegal combination added and test fixed. --------- Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>	2023-03-17 13:52:07 +00:00
Justus Kuhlmann	83204ce794	fixed appended mode reading (#165)	2023-03-16 13:12:03 +00:00
Justus Kuhlmann	41fec09816	Impr/fix refactor sfcf read (#164) ... * refactor read_sfcf * adding tests for find_corr and read_compact_file * add necessary broken data for tests * fixed appended mode reading * factored out sort_names and find_files * now also using sort_files in sfcf.py * edited tests to fit with new structure * added find_files function * shifted helpfunctions to bottom of file * removed some debug lines * linting * Fixed requested changes, added silent mode * added Exception if correlator is not found by read_append_rep * use tmp_path fixture * linting silent keyword * try to fix testing for a_bb * tests: Exception testing in test_find_corr made more explicit. --------- Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>	2023-03-15 17:46:12 +00:00
Fabian Joswig	90c9ce9c73	refactor: unnecessary line in fit parameter detection removed. ... Iterator variable renamed.	2023-03-14 09:50:35 +00:00
Fabian Joswig	5255f87d7d	docs: image resized.	2023-03-13 16:34:01 +00:00
Fabian Joswig	23fd00b4c2	docs: image resized.	2023-03-13 16:25:50 +00:00
Fabian Joswig	8530353d32	docs: xkcd 927 added to documentation of json.gz format.	2023-03-13 16:20:25 +00:00
Fabian Joswig	08197efe0f	docs: moved installation info for develop branch to documentation.	2023-03-13 13:30:43 +00:00
Fabian Joswig	a2a64146b0	docs: installation info also added to start page of the documentation.	2023-03-13 13:27:57 +00:00
Fabian Joswig	bafa6ce38d	feat: system added to print_config.	2023-03-11 21:31:21 +00:00
Fabian Joswig	0044f90315	feat: print_config moved to misc.	2023-03-11 21:22:03 +00:00
Fabian Joswig	8ed5ce9569	feat: print_config function added to help with debugging.	2023-03-11 21:17:09 +00:00
Fabian Joswig	3c942b380d	Serialize list of Obs in pandas.to_sql (#162) ... * feat: Added serialization of list of Obs in pandas.to_sql. * tests: test for list of Obs to sql added. * feat: auto_gamma functionality added for deserialization of lists of Obs.	2023-03-10 14:17:20 +00:00
Fabian Joswig	a7a098b861	fix: chisquare, dof and p-value also calculated when dof is 0. Test for ... dof and chisquare_over_dof added.	2023-03-09 15:32:27 +00:00
Fabian Joswig	99a1033703	refactor: refactored construction of prior Obs in least_squares.	2023-03-09 14:25:37 +00:00
Fabian Joswig	507fa7dbdc	chore: Duplicate check of y-errors removed and Exception made more ... explicit in least_squares.	2023-03-08 16:52:21 +00:00
Fabian Joswig	80f4eef912	chore: Exception in least_squares specified.	2023-03-08 16:45:29 +00:00
Fabian Joswig	e6051d7ba0	docs: docstring of least_squares updated.	2023-03-07 16:39:37 +00:00
Fabian Joswig	839d9214ed	Improved prior fit (#161) ... * refactor: merged combined fit and prior fit without breaking the routine. Fitting with priors does not work yet. * refactor: correlated fits without priors work now. * refactor: prior error propagation and dof fixed. * refactor: old prior fit implementation moved to tests. * refactor: moved _extract_val_and_dval out of least_squares. * refactor: comment removed. * tests: additional tests and exceptions added. * tests: test for constrained prior fit added. * docs: least_squares docstring extended. * fix: linting errors fixed. * feat: additional if cause for fits without priors added to achieve original speed. * tests: test_constrained_and_prior_fit fixed. * fix: fix array cast of least_squares dict mode. * tests: test for lists in dict fit added. * fix: additional asarray added in resplot. Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>	2023-03-07 16:15:16 +00:00
Fabian Joswig	82cd2f11ea	fix: multi dim fits fixed in least squares. Test added. (#160) ... Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>	2023-03-03 16:35:26 +00:00
Fabian Joswig	cb289a55ec	Merge pull request #158 from fjosw/refactor/fits2 ... Refactor chisquare function in least squares	2023-03-03 16:34:28 +00:00
Fabian Joswig	9ef7e504a0	chore: Exceptions in Obs.__init__ made more explicit.	2023-03-02 18:54:08 +00:00
Fabian Joswig	2ac38515b6	refactor: logic in least square fits simplified. ... Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>	2023-03-02 18:42:55 +00:00
Fabian Joswig	a140b2ab39	refactor: removed redundant formulations of the chisquare function in ... least_squares.	2023-03-01 16:29:59 +00:00
Fabian Joswig	ee2944d5b0	refactor: chisqfunc rewritten as sum over residuals.	2023-03-01 16:12:31 +00:00
Fabian Joswig	dc7033e51f	refactor: _standard_fit method made redundant. (#154) ... * refactor: _standard_fit method made redundant. * fix: xs and yz in Corr.fit promoted to arrays. * fix: x promoted to array in _combined_fit if input is just a list. * feat: residual_plot and qqplot now work with combined fits with dictionary inputs. * tests: test for combined fit resplot and qqplot added. * docs: docstring of fits.residual_plot extended.	2023-03-01 10:00:35 +00:00
Fabian Joswig	de35332a80	Merge pull request #157 from fjosw/fix/calc_rho_large_t ... _calculate_drho for large time separations	2023-02-28 15:46:54 +00:00
Fabian Joswig	d81d6ea0b8	fix: loop range in standard windowing procedure adjusted by gapsize ... - Test added Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>	2023-02-27 21:43:29 +00:00
Fabian Joswig	a33c0a205a	feat: added __slots__ to Corr class. (#155)	2023-02-27 10:23:02 +00:00
Fabian Joswig	854b46c5b4	chore: reformat in _compute_drho.	2023-02-26 18:58:54 +00:00
Fabian Joswig	82adb215be	fix: _compute_drho now also works for i > w_max / 2.	2023-02-26 18:49:54 +00:00
Justus Kuhlmann	0bc08be634	Impr/refactor find files (#153) ... * wrote small test for ms5_xsf read method * small bug in ms5_xsf found * first version of refactoring with test * built _find_files into openQCD module * postfix can now be used as before * altered test data to be smaller * read_rwms throws better Exception now * typo corrected * better tests for postfixes, also added similar solution for ext variable * added method to sort names of files and replica better	2023-02-17 11:51:00 +00:00
Fabian Joswig	ee74ec4ed7	feat: removed computation of drho from standard windowing procedure. (#152)	2023-02-13 16:54:28 +00:00
Justus Kuhlmann	cef3c3e793	Impr/refactor find files (#151) ... * wrote small test for ms5_xsf read method * small bug in ms5_xsf found * first version of refactoring with test * built _find_files into openQCD module * postfix can now be used as before * altered test data to be smaller * read_rwms throws better Exception now * typo corrected * better tests for postfixes, also added similar solution for ext variable	2023-02-08 14:52:29 +00:00
Fabian Joswig	bd66075f91	build: version number bumped to 2.7.0+dev.	2023-02-07 13:14:29 +00:00
Fabian Joswig	b6ebb64469	build: version number bumped to 2.6.0	2023-02-07 13:08:29 +00:00
Fabian Joswig	2027f0003a	Merge pull request #149 from jkuhl-uni/feat/read_ms5_xsf ... fix for the case that there are multiple dots in file names	2023-02-07 13:00:40 +00:00
jkuhl-uni	ea1c89cad1	fix for the case that there are multiple dotsin file names	2023-02-07 13:52:33 +01:00
Fabian Joswig	3ca79581f3	Merge pull request #148 from PiaLJP/feature/correlated_combined_fit ... Feature/correlated combined fit	2023-02-03 17:05:36 +00:00
ppetrak	b0b5d88dc3	Merge branch 'develop' of https://github.com/PiaLJP/piapyerrors into develop	2023-02-03 15:04:06 +01:00
ppetrak	ba54545b4e	feat/tests: Correlated fits now also work for combined fits.	2023-02-03 14:54:54 +01:00
Fabian Joswig	2e66f0323a	Merge pull request #147 from fjosw/fix/non_overlapping_cnfgs ... Fix non overlapping configurations	2023-02-02 15:15:04 +00:00
Fabian Joswig	3236ba54e7	Merge pull request #134 from PiaLJP/develop ... sample implementation of a (uncorrelated) combined fit	2023-02-02 15:09:11 +00:00
Fabian Joswig	088f4d1239	feat: additional check for invalid input to least_squares added. ... Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>	2023-02-02 14:58:35 +00:00
Fabian Joswig	37b3498258	fix: unused variable removed in dobs.py	2023-02-02 14:38:43 +00:00
Simon Kuberski	dc5116aa2f	dobs: Zeros are written if config is not part of the Obs, these are ignored on input	2023-02-02 15:31:46 +01:00
Fabian Joswig	cb31e681b8	fix: rescaled incomplete measurements.	2023-01-31 17:44:49 +00:00