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949 commits

Author SHA1 Message Date
Simon Kuberski
0e685d552a Added reference to JSON schema 2022-02-21 18:46:56 +01:00
Simon Kuberski
5f2c8be7b2 Refined documentation, merged with develop 2022-02-21 18:43:59 +01:00
JanNeuendorf
ab960ee7ad typo 2022-02-21 18:34:19 +01:00
Simon Kuberski
04533c2c2f Documentation of the JSON format 2022-02-21 18:33:06 +01:00
JanNeuendorf
6b7aa29cdb GEVP method now uses scipy.eigh() and applies matrix_symmetric(). Eigenvalue takes the same arguments as GEVP and projects automatically. 2022-02-21 18:24:40 +01:00
Fabian Joswig
9ba180e3c4 docs: typos in documentation corrected. 2022-02-21 14:51:27 +00:00
JanNeuendorf
951233ab79 Fixed bug in Corr._init_() , added auto_gamma argument to plateaus and updated the examples. 2022-02-18 09:46:07 +01:00
Fabian Joswig
ef98a5a974 fix: redundant argument 'tree' removed from read_meson_hd5 2022-02-17 13:01:56 +00:00
Fabian Joswig
0e073da5c6 refactor: calculation of permutations in correlator module simplified. 2022-02-17 09:32:34 +00:00
Fabian Joswig
ffdda97c65
Merge pull request #70 from fjosw/feature/auto_gamma_parameter 
auto_gamma parameter introduced to Corr.show
 2022-02-16 11:57:55 +00:00
Fabian Joswig
a8f029629a
Merge pull request #73 from s-kuberski/feature/json_io 
Feature/json io
 2022-02-16 11:56:44 +00:00
Simon Kuberski
005f54e0d1 Reduce RAM requirements when reading a JSON file 2022-02-16 11:26:06 +01:00
Simon Kuberski
bd20057f52 Cut RAM requirements for reading JSON in half 2022-02-16 11:13:11 +01:00
Fabian Joswig
116dd67e53
Merge pull request #72 from jkuhl-uni/feature/input_2.0 
bug fix: read methods are in fact closing files now
 2022-02-15 21:33:02 +00:00
jkuhl-uni
0c1b11f8ac and again flake8 2022-02-15 22:15:51 +01:00
jkuhl-uni
1ea759f1cc bug fix: read methods are in fact closing files now 2022-02-15 22:03:52 +01:00
Fabian Joswig
815970e780 fix: calls to gamma_method added to T_symmetric and antisymmetric 
methods of the Corr class to restore original functionality
 2022-02-15 17:05:56 +00:00
Fabian Joswig
a8d9846fbb feat: introduced cfg_separator parameter to read_sfcf which allows to 
use custom cfg separators different from "n"
 2022-02-15 16:35:30 +00:00
Fabian Joswig
0d201081fc feat: auto_gamma parameter introduced to Corr.show 2022-02-15 16:10:41 +00:00
Fabian Joswig
5f86aaba4b feat: calls to the gamma_method removed in Corr.__init__ and other 
method of the Corr class. Test adjusted by adding additional calls to
the gamma_method
 2022-02-15 13:25:01 +00:00
Fabian Joswig
a0753fa984 fix: parameter 'means' of Obs.__init__ demoted to a keyword argument. 
Documentation of 'means' removed from the docstring.
 2022-02-15 13:16:25 +00:00
Fabian Joswig
ddfd7a2a39 fix: removed automatic call to gamma_method in __str__ method of 
Fit_results class
 2022-02-15 12:24:14 +00:00
Fabian Joswig
1a48d6939a docs: clarified that matrix operations also work on CObs matrices. 2022-02-14 14:24:30 +00:00
Fabian Joswig
ae60c5bb8a docs: documentation for input module restructured. 2022-02-14 14:18:49 +00:00
Fabian Joswig
3a6fc810b1 docs: documentation of error propagation for iterative algorithms 
extended.
 2022-02-14 14:06:46 +00:00
Fabian Joswig
e80fde6630 fix: Obs.dump can now be provided with a description for the json.gz 
file
 2022-02-13 16:21:27 +00:00
Fabian Joswig
d772e09d50 fix: Special case were no replica separator is specified accounted for 2022-02-10 15:29:00 +00:00
Fabian Joswig
c5c82dae21 fix: erroneous replica separator in json format caught and corrected 2022-02-10 14:57:37 +00:00
Fabian Joswig
dbcceeea3a
Merge pull request #63 from s-kuberski/feature/irregularMC 
Bugfix in _reduce_deltas. Results were correct, but performance was bad
 2022-02-10 13:55:51 +00:00
Simon Kuberski
5818dbe883 Bugfix in _reduce_deltas. Results were correct, but performance was bad 2022-02-10 14:49:12 +01:00
Fabian Joswig
8788891d5f refactor: import order corrected 2022-02-10 11:23:25 +00:00
Fabian Joswig
3523bfa568 refactor: isinstance comparisons in correlators module simplified 2022-02-10 11:12:31 +00:00
Fabian Joswig
31a98f81c4 tests: openQCD tests split up in two functions, coverage improved 2022-02-10 11:03:59 +00:00
Simon Kuberski
cf137e2843 Added tests for t0 and qtop 2022-02-09 18:41:54 +01:00
Fabian Joswig
ca04097272 feat: thin method added to Corr class which allows to thin out a 
correlator in order suppress correlations between neighbouring entries
 2022-02-09 15:32:18 +00:00
Fabian Joswig
471eabeb8c fix: Bug in export of derivative of correlator containing covobs fixed, 
test added.
 2022-02-09 14:18:36 +00:00
Fabian Joswig
f16ba109fc
Merge pull request #60 from s-kuberski/feature/rwf 
Yet another small change to openQCD. Added explicit tests for reweighting
 2022-02-09 14:00:59 +00:00
Simon Kuberski
570c6abf2a Yet another small change to openQCD. Added explicit tests for reweighting. 2022-02-09 14:08:05 +01:00
Fabian Joswig
8f2312240f refactor: pseudo_Obs moved to misc 2022-02-09 11:38:00 +00:00
Fabian Joswig
0a1a9ce1a1 docs: docstrings and comments cleaned up 2022-02-09 11:33:16 +00:00
Simon Kuberski
6d9ce5bb52 Catching the special case, where r_stop is equal to the last item of the configlist in openQCD routines 2022-02-09 12:03:53 +01:00
Simon Kuberski
445476beb8 Bugfix in openQCD routines: r_stop was excluded instead of being the last element 2022-02-09 11:56:47 +01:00
Fabian Joswig
f51503555b fix: CObs can now be added and multiplied to as well as subtracted from 
Obs in all combinations
 2022-02-08 17:07:40 +00:00
Fabian Joswig
f923ad06f7
Merge pull request #57 from s-kuberski/feature/rwf 
Rewritten large parts of Qtop routines, making it compatible with sfqcd
 2022-02-08 16:53:27 +00:00
Simon Kuberski
aadf9cf32f Rewritten large parts of Qtop routines, making it compatible with sfqcd 2022-02-08 15:44:56 +01:00
Fabian Joswig
091f19def1 fix: Bug in Corr.Hankel fixed 2022-02-08 14:31:38 +00:00
Fabian Joswig
1196935e4e refactor!: Renamed methods smearing into index and smearing_symmetric 
into matrix_symmetric
 2022-02-08 14:06:04 +00:00
Fabian Joswig
b8b3d6191f docs: typos fixed, print statements removed 2022-02-08 13:48:55 +00:00
jkuhl-uni
b6e75230df small flake8 issue resolved 2022-02-08 11:23:13 +01:00
jkuhl-uni
71fe86b8ba merge with develop 2022-02-08 11:16:20 +01:00