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Merge pull request #60 from s-kuberski/feature/rwf
Yet another small change to openQCD. Added explicit tests for reweighting
This commit is contained in:
Fabian Joswig
GitHub
commit
f16ba109fc
4 changed files with 62 additions and 15 deletions
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@ -182,6 +182,13 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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print('Partial factor:', tmp_nfct)
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tmp_array[i].append(tmp_nfct)
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diffmeas = configlist[-1][-1] - configlist[-1][-2]
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configlist[-1] = [item // diffmeas for item in configlist[-1]]
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if configlist[-1][0] > 1 and diffmeas > 1:
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warnings.warn('Assume thermalization and that the first measurement belongs to the first config.')
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offset = configlist[-1][0] - 1
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configlist[-1] = [item - offset for item in configlist[-1]]
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if r_start[rep] is None:
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r_start_index.append(0)
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else:
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@ -195,15 +202,13 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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r_stop_index.append(len(configlist[-1]) - 1)
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else:
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try:
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r_stop_index.append(configlist[-1].index(r_stop[rep]) + 1)
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if r_stop_index[-1] == len(configlist[-1]):
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r_stop_index[-1] -= 1
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r_stop_index.append(configlist[-1].index(r_stop[rep]))
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except ValueError:
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raise Exception('Config %d not in file with range [%d, %d]' % (
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r_stop[rep], configlist[-1][0], configlist[-1][-1])) from None
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for k in range(nrw):
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deltas[k].append(tmp_array[k][r_start_index[rep]:r_stop_index[rep]][::r_step])
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deltas[k].append(tmp_array[k][r_start_index[rep]:r_stop_index[rep] + 1][::r_step])
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if np.any([len(np.unique(np.diff(cl))) != 1 for cl in configlist]):
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raise Exception('Irregular spaced data in input file!', [len(np.unique(np.diff(cl))) for cl in configlist])
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@ -213,7 +218,8 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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print(',', nrw, 'reweighting factors with', nsrc, 'sources')
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result = []
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idl = [range(configlist[rep][r_start_index[rep]], configlist[rep][r_stop_index[rep]], r_step) for rep in range(replica)]
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idl = [range(configlist[rep][r_start_index[rep]], configlist[rep][r_stop_index[rep]] + 1, r_step) for rep in range(replica)]
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for t in range(nrw):
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result.append(Obs(deltas[t], rep_names, idl=idl))
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return result
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@ -395,9 +401,7 @@ def extract_t0(path, prefix, dtr_read, xmin, spatial_extent, fit_range=5, **kwar
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r_stop_index.append(len(configlist[-1]) - 1)
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else:
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try:
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r_stop_index.append(configlist[-1].index(r_stop[rep]) + 1)
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if r_stop_index[-1] == len(configlist[-1]):
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r_stop_index[-1] -= 1
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r_stop_index.append(configlist[-1].index(r_stop[rep]))
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except ValueError:
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raise Exception('Config %d not in file with range [%d, %d]' % (
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r_stop[rep], configlist[-1][0], configlist[-1][-1])) from None
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@ -408,7 +412,7 @@ def extract_t0(path, prefix, dtr_read, xmin, spatial_extent, fit_range=5, **kwar
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if np.any([step != 1 for step in stepsizes]):
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warnings.warn('Stepsize between configurations is greater than one!' + str(stepsizes), RuntimeWarning)
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idl = [range(configlist[rep][r_start_index[rep]], configlist[rep][r_stop_index[rep]], r_step) for rep in range(replica)]
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idl = [range(configlist[rep][r_start_index[rep]], configlist[rep][r_stop_index[rep]] + 1, r_step) for rep in range(replica)]
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t2E_dict = {}
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for n in range(nn + 1):
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samples = []
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@ -416,7 +420,7 @@ def extract_t0(path, prefix, dtr_read, xmin, spatial_extent, fit_range=5, **kwar
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samples.append([])
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for cnfg in rep:
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samples[-1].append(cnfg[n])
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samples[-1] = samples[-1][r_start_index[nrep]:r_stop_index[nrep]][::r_step]
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samples[-1] = samples[-1][r_start_index[nrep]:r_stop_index[nrep] + 1][::r_step]
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new_obs = Obs(samples, rep_names, idl=idl)
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t2E_dict[n * dn * eps] = (n * dn * eps) ** 2 * new_obs / (spatial_extent ** 3) - 0.3
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@ -720,9 +724,7 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="openQCD", **kwargs):
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r_stop_index.append(len(configlist[-1]) - 1)
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else:
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try:
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r_stop_index.append(configlist[-1].index(r_stop[rep]) + 1)
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if r_stop_index[-1] == len(configlist[-1]):
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r_stop_index[-1] -= 1
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r_stop_index.append(configlist[-1].index(r_stop[rep]))
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except ValueError:
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raise Exception('Config %d not in file with range [%d, %d]' % (
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r_stop[rep], configlist[-1][0], configlist[-1][-1])) from None
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@ -766,8 +768,8 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="openQCD", **kwargs):
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rep_names = names
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deltas.append(Q_top)
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idl = [range(int(configlist[rep][r_start_index[rep]]), int(configlist[rep][r_stop_index[rep]]), 1) for rep in range(len(deltas))]
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deltas = [deltas[nrep][r_start_index[nrep]:r_stop_index[nrep]] for nrep in range(len(deltas))]
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idl = [range(int(configlist[rep][r_start_index[rep]]), int(configlist[rep][r_stop_index[rep]]) + 1, 1) for rep in range(len(deltas))]
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deltas = [deltas[nrep][r_start_index[nrep]:r_stop_index[nrep] + 1] for nrep in range(len(deltas))]
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result = Obs(deltas, rep_names, idl=idl)
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return result
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BIN
tests/data/openqcd_test/openqcd2r1.ms1.dat
Normal file
BIN
tests/data/openqcd_test/openqcd2r1.ms1.dat
Normal file
Binary file not shown.
BIN
tests/data/openqcd_test/sfqcdr1.rwms.dat
Normal file
BIN
tests/data/openqcd_test/sfqcdr1.rwms.dat
Normal file
Binary file not shown.
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@ -242,3 +242,48 @@ def test_json_dict_io():
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jsonio.dump_dict_to_json(od, fname, description=desc)
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os.remove(fname + '.json.gz')
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def test_openqcd():
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path = './tests//data/openqcd_test/'
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prefix = 'sfqcd'
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postfix = '.rwms'
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# sfqcd-1.6: Trajectories instead of confignumbers are printed to file.
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rwfo = pe.input.openQCD.read_rwms(path, prefix, version='1.6', postfix=postfix)
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repname = list(rwfo[0].idl.keys())[0]
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assert(rwfo[0].idl[repname] == range(1, 13))
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rwfo = pe.input.openQCD.read_rwms(path, prefix, version='1.6', postfix=postfix, r_start=[1], r_stop=[12])
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assert(rwfo[0].idl[repname] == range(1, 13))
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rwfo = pe.input.openQCD.read_rwms(path, prefix, version='1.6', postfix=postfix, r_start=[3], r_stop=[8])
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assert(rwfo[0].idl[repname] == range(3, 9))
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rwfo = pe.input.openQCD.read_rwms(path, prefix, version='1.6', postfix=postfix, r_start=[2], r_stop=[6])
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assert(rwfo[0].idl[repname] == range(2, 7))
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rwfs = pe.input.openQCD.read_rwms(path, prefix, version='1.6', postfix=postfix, r_start=[1], r_stop=[12], r_step=2)
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assert(rwfs[0].idl[repname] == range(1, 12, 2))
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rwfs = pe.input.openQCD.read_rwms(path, prefix, version='1.6', postfix=postfix, r_start=[2], r_stop=[12], r_step=2)
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assert(rwfs[0].idl[repname] == range(2, 13, 2))
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rwfo = pe.input.openQCD.read_rwms(path, prefix, version='1.6', postfix=postfix)
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assert((rwfo[0].r_values[repname] + rwfo[0].deltas[repname][1]) == (rwfs[0].r_values[repname] + rwfs[0].deltas[repname][0]))
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o = pe.pseudo_Obs(1., .01, repname, samples=12)
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pe.reweight(rwfo[0], [o])
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o = pe.pseudo_Obs(1., .01, repname, samples=6)
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pe.reweight(rwfo[0], [o])
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o.idl[repname] = range(2, 13, 2)
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pe.reweight(rwfo[0], [o])
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pe.reweight(rwfs[0], [o])
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files = ['openqcd2r1.ms1.dat']
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names = ['openqcd2|r1']
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# TM with 2 Hasenbusch factors and 2 sources each + RHMC with one source, openQCD 2.0
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rwfo = pe.input.openQCD.read_rwms(path, prefix, version='2.0', files=files, names=names)
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assert(len(rwfo) == 2)
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assert(rwfo[0].value == 0.9999974970236312)
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assert(rwfo[1].value == 1.184681251089919)
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repname = list(rwfo[0].idl.keys())[0]
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assert(rwfo[0].idl[repname] == range(1, 10))
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rwfo = pe.input.openQCD.read_rwms(path, prefix, version='2.0', files=files, names=names, r_start=[1], r_stop=[8])
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assert(rwfo[0].idl[repname] == range(1, 9))
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