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949 commits

Author SHA1 Message Date
Fabian Joswig
5359a30b97 fix: Bug in Corr.projected fixed which appears in connection with arrays 
of None as Corr entry.
 2022-06-13 11:59:05 +01:00
Fabian Joswig
0d86df2506 build: Version number bumped to 2.2.0+dev, CHANGELOG added to project 
links in setup.py
 2022-06-10 10:30:00 +01:00
Fabian Joswig
efd6d97d0a docs: CHANGELOG updated, version number bumped to 2.1.2 2022-06-10 10:21:28 +01:00
Fabian Joswig
78f576a35e fix: Corr.matrix_symmetric now also works if entries of the correlators 
are arrays with at least one None entry.
 2022-06-09 16:47:13 +01:00
Fabian Joswig
02ed8ecd32 build: version number bumped to 2.2.0+dev 2022-06-07 10:59:11 +01:00
Fabian Joswig
92285942ac build: Version number bumped to 2.1.1, CHANGELOG updated. 2022-06-06 15:56:19 +01:00
Fabian Joswig
155c329921 fix: bug in error propagation for correlated fits fixed. 2022-06-06 15:47:41 +01:00
Fabian Joswig
6bd724715f fix: Fit_result.gamma_method can now be called with kwargs 2022-06-06 15:04:16 +01:00
Fabian Joswig
ccb424a251 fix: hide_sigma in Corr.show now ignores the entry at 0 for the 
estimation of the plot range.
 2022-05-31 13:43:34 +01:00
Fabian Joswig
e89a537f7c build: version number bumped to 2.2.0+dev 2022-05-31 12:11:42 +01:00
Fabian Joswig
2fb4982988 build: version number bumped to 2.1.0 2022-05-31 11:54:26 +01:00
Fabian Joswig
4aae55d1d6 docs: Docstring for fits.least_square extended. 2022-05-31 11:51:59 +01:00
Fabian Joswig
46cc5dd792 feat: The desired correlation function extracted with 
input.hadrons.read_meson_hd5 can now also be specified via a tuple of
strings indicating the desired source and sink gamma matrices.
 2022-05-29 13:58:43 +01:00
Fabian Joswig
658c2b30de feat: eigenvalue calculation in pe.covariance is not done if only the 
correlation matrix is requested.
 2022-05-27 14:17:05 +01:00
Fabian Joswig
328c564fdd feat: further improvement of inverse of cholesky decomposed correlation 
matrix.
 2022-05-27 14:00:46 +01:00
Fabian Joswig
30297a4f83 Merge branch 'develop' of github.com:fjosw/pyerrors into develop 2022-05-27 13:50:53 +01:00
Fabian Joswig
09fd1fdf60 feat: rounding errors in inversion of cholesky decomposed correlation 
matrix reduced.
 2022-05-27 13:50:19 +01:00
Fabian Joswig
f02488208a
Merge pull request #102 from fjosw/feature/covariance_idl2 
Feature/covariance idl2
 2022-05-26 15:01:35 +01:00
Fabian Joswig
e7f5961cd6 fix: bug in estimation of chisquare for correlated fit fixed, tests 
added.
 2022-05-26 13:52:05 +01:00
Fabian Joswig
ff5540d667 feat: optimized calculation of the inverse hessian for error propagation 
in fits.
 2022-05-26 10:19:39 +01:00
Fabian Joswig
919ba68a52 feat: When least_squares is called with correlated_fit=True the routine 
first performs an uncorrelated fit in order to find appropriate starting
parameters.
 2022-05-25 17:59:29 +01:00
Fabian Joswig
48636fedb2 docs: warning about ill conditioned hessian more detailed. 2022-05-25 15:20:31 +01:00
Fabian Joswig
967ddb0ecd fix: no-autograd exception in fits works again. 2022-05-25 14:51:46 +01:00
Fabian Joswig
9ad0146d96 fix: pinv replaced by inv for inversion of hessian in fit module, exceptions and warnings added. 2022-05-25 14:32:49 +01:00
Fabian Joswig
9666011781 docs: reference to examples and binder link added to docs. 2022-05-22 11:38:16 +01:00
Simon Kuberski
d7a8721ef6 bug: Fixed dobs I/O, similarly to JSON I/O 2022-05-19 19:18:53 +02:00
Fabian Joswig
d531b98234 fix: fixed value assignment for json format reconstruction when the 
average of the r_values is not equal to value
 2022-05-19 15:50:47 +01:00
Fabian Joswig
5f7adf839f build: json.gz format version bumped to 1.1 2022-05-19 14:39:57 +01:00
Simon Kuberski
9239905ee8 bugfix: Deltas in JSON file are now relative to o.value and not o.r_values[r_name] 2022-05-19 10:14:55 +02:00
Fabian Joswig
b7edd22aba
Merge pull request #100 from fjosw/feature/GEVP_return_all_vectors 
GEVP rehaul 2
 2022-05-18 16:21:08 +01:00
Fabian Joswig
21eed4c596 Merge branch 'feature/read_DistillationContraction' into develop 2022-05-18 10:24:53 +01:00
Fabian Joswig
088a7da7e6 feat: Deprecation warning for Corr.GEVP kwarg state removed, 
documentation extended.
 2022-05-18 10:09:23 +01:00
Fabian Joswig
98ce553521 fix: exception for ts<=t0 generalized, tests added. 2022-05-18 10:02:56 +01:00
Fabian Joswig
43118bb67d docs: docstring of Corr.Eigenvalue simplified. 2022-05-16 14:19:15 +01:00
Fabian Joswig
9c17b8e719 feat: argument state readded to Corr.GEVP as deprecated kwarg. 
Documentation of GEVP and _solve_GEVP extended.
 2022-05-16 14:13:33 +01:00
Fabian Joswig
2136958fbc feat: sorted_list argument readded to Corr.GEVP with a deprecation 
warning.
 2022-05-16 13:42:12 +01:00
Fabian Joswig
4c06f9886d fix: GEVP sorted vectors fixed and simplified. 2022-05-16 13:22:42 +01:00
Fabian Joswig
c00c21ee86 !refactor: argument sorted_list of Corr.GEVP renamed to sort. 2022-05-16 11:45:10 +01:00
Fabian Joswig
92b19cba9f !feat: GEVP now returns all eigenvectors instead of just the ones for 
the specified state.
 2022-05-16 11:44:02 +01:00
Fabian Joswig
ba054fa11c refactor: correlators._solve_GEVP simplified and optimized, test added. 2022-05-16 11:35:23 +01:00
Fabian Joswig
d60212739b
Merge branch 'develop' into feature/GEVP_t0 2022-05-16 11:28:36 +01:00
Fabian Joswig
3a616e7897 docs: documentation of covariance extended. 2022-05-16 10:55:51 +01:00
Fabian Joswig
57834be62e feat: argument save added to Obs.plot_piechart 2022-05-13 16:42:22 +01:00
Fabian Joswig
10fc8b1f6e feat: GEVP not evaluated for t <= t0, additional checks added, 
Eigenvector sort method can now cope with None entries.
 2022-05-12 16:40:32 +01:00
Fabian Joswig
d3e72ef7d4 fix: Exception added for cholesky decomposition of complex matrices. 2022-05-12 15:15:57 +01:00
Fabian Joswig
be0990d112 fix: spacing fixed 2022-05-12 15:12:42 +01:00
Fabian Joswig
acb47a6782 fix: check for CObs in linalg._mat_mat_op generalized. 2022-05-12 15:10:24 +01:00
Fabian Joswig
07a6bb8a9d fix: small bug in input.hadrons._get_files fixed. 2022-05-12 10:54:07 +01:00
Fabian Joswig
e557c9b54d feat: runtime warning added when ts is used in combination with 
sorted_list="Eigenvalue" in Corr.GEVP
 2022-05-09 14:14:26 +01:00
Fabian Joswig
36001b2159 feat: input.hadrons.read_meson_hd5 file access optimized. 2022-05-09 14:04:59 +01:00