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981 commits

Author SHA1 Message Date
Fabian Joswig
e7f5961cd6 fix: bug in estimation of chisquare for correlated fit fixed, tests 
added.
 2022-05-26 13:52:05 +01:00
Fabian Joswig
ff5540d667 feat: optimized calculation of the inverse hessian for error propagation 
in fits.
 2022-05-26 10:19:39 +01:00
Fabian Joswig
919ba68a52 feat: When least_squares is called with correlated_fit=True the routine 
first performs an uncorrelated fit in order to find appropriate starting
parameters.
 2022-05-25 17:59:29 +01:00
Fabian Joswig
48636fedb2 docs: warning about ill conditioned hessian more detailed. 2022-05-25 15:20:31 +01:00
Fabian Joswig
967ddb0ecd fix: no-autograd exception in fits works again. 2022-05-25 14:51:46 +01:00
Fabian Joswig
9ad0146d96 fix: pinv replaced by inv for inversion of hessian in fit module, exceptions and warnings added. 2022-05-25 14:32:49 +01:00
Fabian Joswig
9666011781 docs: reference to examples and binder link added to docs. 2022-05-22 11:38:16 +01:00
Simon Kuberski
d7a8721ef6 bug: Fixed dobs I/O, similarly to JSON I/O 2022-05-19 19:18:53 +02:00
Fabian Joswig
d531b98234 fix: fixed value assignment for json format reconstruction when the 
average of the r_values is not equal to value
 2022-05-19 15:50:47 +01:00
Fabian Joswig
5f7adf839f build: json.gz format version bumped to 1.1 2022-05-19 14:39:57 +01:00
Simon Kuberski
9239905ee8 bugfix: Deltas in JSON file are now relative to o.value and not o.r_values[r_name] 2022-05-19 10:14:55 +02:00
Fabian Joswig
b7edd22aba
Merge pull request #100 from fjosw/feature/GEVP_return_all_vectors 
GEVP rehaul 2
 2022-05-18 16:21:08 +01:00
Fabian Joswig
21eed4c596 Merge branch 'feature/read_DistillationContraction' into develop 2022-05-18 10:24:53 +01:00
Fabian Joswig
088a7da7e6 feat: Deprecation warning for Corr.GEVP kwarg state removed, 
documentation extended.
 2022-05-18 10:09:23 +01:00
Fabian Joswig
98ce553521 fix: exception for ts<=t0 generalized, tests added. 2022-05-18 10:02:56 +01:00
Fabian Joswig
43118bb67d docs: docstring of Corr.Eigenvalue simplified. 2022-05-16 14:19:15 +01:00
Fabian Joswig
9c17b8e719 feat: argument state readded to Corr.GEVP as deprecated kwarg. 
Documentation of GEVP and _solve_GEVP extended.
 2022-05-16 14:13:33 +01:00
Fabian Joswig
2136958fbc feat: sorted_list argument readded to Corr.GEVP with a deprecation 
warning.
 2022-05-16 13:42:12 +01:00
Fabian Joswig
4c06f9886d fix: GEVP sorted vectors fixed and simplified. 2022-05-16 13:22:42 +01:00
Fabian Joswig
c00c21ee86 !refactor: argument sorted_list of Corr.GEVP renamed to sort. 2022-05-16 11:45:10 +01:00
Fabian Joswig
92b19cba9f !feat: GEVP now returns all eigenvectors instead of just the ones for 
the specified state.
 2022-05-16 11:44:02 +01:00
Fabian Joswig
ba054fa11c refactor: correlators._solve_GEVP simplified and optimized, test added. 2022-05-16 11:35:23 +01:00
Fabian Joswig
d60212739b
Merge branch 'develop' into feature/GEVP_t0 2022-05-16 11:28:36 +01:00
Fabian Joswig
3a616e7897 docs: documentation of covariance extended. 2022-05-16 10:55:51 +01:00
Fabian Joswig
57834be62e feat: argument save added to Obs.plot_piechart 2022-05-13 16:42:22 +01:00
Fabian Joswig
10fc8b1f6e feat: GEVP not evaluated for t <= t0, additional checks added, 
Eigenvector sort method can now cope with None entries.
 2022-05-12 16:40:32 +01:00
Fabian Joswig
d3e72ef7d4 fix: Exception added for cholesky decomposition of complex matrices. 2022-05-12 15:15:57 +01:00
Fabian Joswig
be0990d112 fix: spacing fixed 2022-05-12 15:12:42 +01:00
Fabian Joswig
acb47a6782 fix: check for CObs in linalg._mat_mat_op generalized. 2022-05-12 15:10:24 +01:00
Fabian Joswig
07a6bb8a9d fix: small bug in input.hadrons._get_files fixed. 2022-05-12 10:54:07 +01:00
Fabian Joswig
e557c9b54d feat: runtime warning added when ts is used in combination with 
sorted_list="Eigenvalue" in Corr.GEVP
 2022-05-09 14:14:26 +01:00
Fabian Joswig
36001b2159 feat: input.hadrons.read_meson_hd5 file access optimized. 2022-05-09 14:04:59 +01:00
Simon Kuberski
78ab077eb8 Use rapidjson instead of json for I/O 2022-05-09 12:51:58 +02:00
Fabian Joswig
f2f2098adb fix: data extraction of different diagrams fixed. 2022-05-05 22:30:46 +01:00
Fabian Joswig
77f0fbf699 feat: Exception added if Corr.GEVP is called on single correlator 
instead of a correlator matrix.
 2022-05-03 10:51:08 +01:00
Fabian Joswig
a6deb52a04 fix: Corr.GEVP now uses symmetrized correlator matrix also for sorting 
methods.
 2022-05-03 10:48:35 +01:00
Fabian Joswig
4bc95b6fdf feat: Standard option for Corr.GEVP is now sorted_list='Eigenvalue'. 2022-05-03 10:27:11 +01:00
Fabian Joswig
d4c913ab88
Merge pull request #97 from s-kuberski/feature/dobs 
Feature/dobs
 2022-05-03 09:26:27 +01:00
Simon Kuberski
729a61db61 Changed some details regarding dobs implementation 2022-05-02 15:12:07 +02:00
Simon Kuberski
44b268fcf9 Merge branch 'develop' into feature/dobs 2022-05-02 14:21:25 +02:00
Fabian Joswig
0952252a64 fix: Exception added if unknown value for sorted_list is specified in 
Corr.GEVP
 2022-05-02 12:58:43 +01:00
Fabian Joswig
c5b25ebdd9 feat: Argument references added to Corr.show 2022-05-02 12:13:03 +01:00
Fabian Joswig
d0f96f2bf8 feat: argument hide_sigma added to Corr.show which allows to 
automatically hide data points with large errors.
 2022-05-02 10:12:23 +01:00
Fabian Joswig
9e3e84ffcd
Merge pull request #96 from s-kuberski/feature/GEVP 
Implemented the pruning of large correlation matrices by the solution…
 2022-04-29 15:34:33 +01:00
Simon Kuberski
0ec6f14b24 Removed redundant test in prune 2022-04-29 16:03:19 +02:00
Fabian Joswig
fd82687b08 feat: first version of read_DistillationContraction_hd5 added. 2022-04-29 13:58:10 +01:00
Fabian Joswig
c4c06b5864 fix: in input.hadrons._get_files the suffix '.h5. is now conditionally 
removed.
 2022-04-29 11:18:41 +01:00
Fabian Joswig
912629b845 fix: additional data point included in obs.plot_tauint figures. 2022-04-29 10:15:51 +01:00
Fabian Joswig
bf4680750c feat: auto yrange of obs.plot_tauint improved. 2022-04-29 10:13:29 +01:00
Simon Kuberski
b8e5f9dfd4 Implemented the pruning of large correlation matrices by the solution of a GEVP at early times 2022-04-28 17:33:38 +02:00