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325 commits

Author SHA1 Message Date
Simon Kuberski
89b0c37e76 fix: corrected bias correction of tau_int for irregular chains 2022-10-17 17:40:27 +02:00
Simon Kuberski
fd4c866fdd fix: bug in automatic window for irregular chains fixed 2022-10-17 14:38:23 +02:00
Fabian Joswig
f5c9a30266
tests: tests for num_grad version of prior fits added. 2022-10-07 18:02:27 +01:00
Fabian Joswig
e4d18fc8c8
tests: num_grad test for total least squares added. 2022-10-06 18:09:37 +01:00
Fabian Joswig
8cf15b651f
tests: num_grad fit test improved. 2022-10-06 17:55:04 +01:00
Fabian Joswig
f22614f999
tests: tests for num diff least square fits added. 2022-10-05 18:41:28 +01:00
Fabian Joswig
2c2890d5ea tests: padding added to is_matrix_symmetric test. 2022-07-19 12:42:45 +01:00
Fabian Joswig
4a6dfe3482 tests: test for is_matrix_symmetric added. 2022-07-19 12:31:10 +01:00
Fabian Joswig
d0180d7967 feat: explicit check for Zeuthen_flow in read_gf_coupling added. 2022-07-12 11:11:36 +01:00
Fabian Joswig
638ec92ab7 feat: Exception for gf coupling c!=0.3 added and documenation and tests 
extended.
 2022-07-11 17:14:32 +01:00
Fabian Joswig
5cd20f5818 feat: function for the extraction of the gradient flow coupling as 
detailed in 1607.06423 added.
 2022-07-11 11:55:25 +01:00
Fabian Joswig
7737ed4ea0
Merge pull request #114 from fjosw/feat/obs_hash 
hash method for Obs objects
 2022-07-08 10:53:48 +01:00
Fabian Joswig
de51d6ca07 refactor: pandas.read_sql_query renamed to read_sql and can now also 
directly extract full tables.
 2022-07-05 13:31:41 +01:00
Fabian Joswig
a6ebcb59bb feat: default value for if_exist in to_sql changed to fail, test for 
this behavior added.
 2022-07-04 17:22:35 +01:00
Fabian Joswig
03d70d3757 tests: missing assert added to pandas test. 2022-07-04 17:11:11 +01:00
Fabian Joswig
845b4e60ac fix: pandas.to_sql does not write an index to the db anymore, docs 
extended, test added.
 2022-07-04 17:08:20 +01:00
Fabian Joswig
504a8f3486 tests: test_import_non_json_string added. 2022-07-04 16:59:24 +01:00
Fabian Joswig
f58ef11845 refactor: pandas serialize and deserialize removed from global 
namespace.
 2022-07-04 14:59:17 +01:00
Fabian Joswig
cc9f47c686 feat: pandas DataFrame serialization and deserialization can now also 
deal with gzipped json columns. Tests added.
 2022-07-04 14:19:30 +01:00
Fabian Joswig
a133030114 tests: additional tests for pandas csv import and export added. 2022-07-04 13:17:57 +01:00
Fabian Joswig
b2d5263ea3 feat: hash method for Obs objects added. 2022-07-01 16:53:08 +01:00
Fabian Joswig
153cc795b8 feat: pandas DataFrames with Corr columns can now also be imported and 
exported.
 2022-06-30 15:26:31 +01:00
Fabian Joswig
c7c1725667 tests: pandas io tests extended. 2022-06-30 14:38:20 +01:00
Fabian Joswig
feab699162 tests: basic test for pandas DataFrame export and re-import added. 2022-06-30 14:27:10 +01:00
Fabian Joswig
fff74ed69e ci: tolerance on total least squares tolerance test relaxed. 2022-06-28 14:51:12 +01:00
Fabian Joswig
763c759ae0 fix: Corr.m_eff can now returns None entries if the correlator has a 
sign flip. Before that the logarithm of a negative number was computed
and a warning was thrown.
 2022-06-28 14:40:49 +01:00
Fabian Joswig
3e29cf9ca8 fix: detection of invalid fit functions extended. 2022-06-24 12:50:26 +01:00
Fabian Joswig
338bf8906a refactor: maintainability issues in tests fixed. 2022-06-24 12:28:49 +01:00
Fabian Joswig
d922b72f3b feat: Obs.reweight method added. 2022-06-23 13:50:24 +01:00
Simon Kuberski
c9789a34e6 Resolved merge conflict in tests 2022-06-19 01:46:31 +02:00
Fabian Joswig
612e6c742b tests: matplotlib figures explicitly closed in tests 2022-06-14 14:46:45 +01:00
Fabian Joswig
ed50240d29 fix: check for correlator None entries refactored and added to all 
elementary operations. Tests added.
 2022-06-13 12:59:54 +01:00
Fabian Joswig
5359a30b97 fix: Bug in Corr.projected fixed which appears in connection with arrays 
of None as Corr entry.
 2022-06-13 11:59:05 +01:00
Fabian Joswig
f49562b895 tests: additional test for least square fits added which probes 
different initial guess and exceptions.

Tolerance in total least square tests relaxed.
 2022-06-10 10:13:49 +01:00
Fabian Joswig
5e550f4321 tests: test for smooth_eigenvalues functionality added. 2022-06-10 09:29:04 +01:00
Fabian Joswig
78f576a35e fix: Corr.matrix_symmetric now also works if entries of the correlators 
are arrays with at least one None entry.
 2022-06-09 16:47:13 +01:00
Fabian Joswig
8a911cac61 tests: Correlated least square fit tested against jackknife resampling 2022-06-07 10:59:26 +01:00
Fabian Joswig
c9e0c6e208 tests: linear least_squares fit error estimation tested against jackknife resampling. 2022-06-06 15:11:03 +01:00
Fabian Joswig
f02488208a
Merge pull request #102 from fjosw/feature/covariance_idl2 
Feature/covariance idl2
 2022-05-26 15:01:35 +01:00
Fabian Joswig
e7f5961cd6 fix: bug in estimation of chisquare for correlated fit fixed, tests 
added.
 2022-05-26 13:52:05 +01:00
Fabian Joswig
6bbd88a8c1 tests: fit_corr_independent now runs for various methods. 2022-05-25 18:03:46 +01:00
Simon Kuberski
d7a8721ef6 bug: Fixed dobs I/O, similarly to JSON I/O 2022-05-19 19:18:53 +02:00
Fabian Joswig
e9184d8368 tests: additional tests for json format added. 2022-05-19 15:51:17 +01:00
Fabian Joswig
bb0236a556 tests: test covariance vs numpy added. 2022-05-19 14:09:05 +01:00
Fabian Joswig
9011adb0de tests: additional test addedwhich checks that merge and intersction of 
idls agree for identical idls.
 2022-05-19 13:53:33 +01:00
Fabian Joswig
60f9bb6a89 tests: Additional tests for covariance with different idls added. 2022-05-19 13:46:04 +01:00
Simon Kuberski
9239905ee8 bugfix: Deltas in JSON file are now relative to o.value and not o.r_values[r_name] 2022-05-19 10:14:55 +02:00
Fabian Joswig
f45b0aa6ec tests: coverage of Corr class improved. 2022-05-18 10:54:09 +01:00
Fabian Joswig
088a7da7e6 feat: Deprecation warning for Corr.GEVP kwarg state removed, 
documentation extended.
 2022-05-18 10:09:23 +01:00
Fabian Joswig
98ce553521 fix: exception for ts<=t0 generalized, tests added. 2022-05-18 10:02:56 +01:00