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Author SHA1 Message Date
Fabian Joswig
a92ce0a733
 		Merge 8b3b1f3c95 into b180dff020 2026-03-30 15:20:20 +02:00
Fabian Joswig
b180dff020 [chore] Bump version to v2.18.0-dev 2026-03-29 20:49:50 +02:00
Fabian Joswig
62f41d0d5f [release] Bump version to 2.17, append CHANGELOG v2.17.0 2026-03-29 20:48:23 +02:00
Fabian Joswig
23d2629801
 		[CI] Run pytest workflows once per week (#280) 2026-03-29 20:43:59 +02:00
Fabian Joswig
8b3b1f3c95 [Fix] Improve rank-deficient detection and bump odrpack to >=0.5 
Fix incorrect ODRPACK95 info code parsing: rank deficiency is encoded
in the tens digit (info // 10 % 10), not the hundreds digit. Add
irank and inv_condnum to the warning message for diagnostics.
 2026-03-29 20:41:19 +02:00
Fabian Joswig
92d5b59430 [Fix] Handle platform-dependent rank-deficient warning in ODR tests 2026-03-29 20:10:54 +02:00
Fabian Joswig
5084894ef9 [ci] Re-add -Werror to pytest workflow 2026-03-29 20:02:55 +02:00
Fabian Joswig
1689dc978c [Fix] Relax test_merge_obs tolerance to machine epsilon and update ODR docstring to reference odrpack 2026-03-29 20:01:48 +02:00
Fabian Joswig
23d54f10f5
 		Merge branch 'develop' into fix_odr_deprecation 2026-03-29 18:46:32 +02:00
Fabian Joswig
682d23604d
 		[Fix] Pandas 3 string type changes (#278) 
* [Fix] Pandas 3 string type handling

* [ci] Temporarily remove WError because of scipy deprecation

* [Fix] Address edge cases in _deserialize_df

- Use pd.isna() instead of truthiness check for gzip null guard, fixing
  incorrect behavior when null is np.nan (which is truthy in Python)
- Add bounds check to while loop to prevent IndexError when all non-null
  values are empty strings converted to None by regex replace

* [Fix] Address edge cases in _deserialize_df and add string dtype tests

- Guard against IndexError on empty DataFrames and all-null columns
- Use is not None instead of pd.isna() for Obs objects in auto_gamma
- Add tests for string dtype columns (with/without None, CSV and SQL)
- Add test for empty DataFrame deserialization

* [Fix] Avoid skipping NA-to-None conversion and guard auto_gamma against None lists

- Replace continue with conditional to preserve NA-to-None conversion for all-null columns
- Guard auto_gamma list lambda against None values to prevent TypeError
- Add tests for all-empty-string columns and Obs lists with None + auto_gamma
 2026-03-29 18:46:15 +02:00
Fabian Joswig
18a70fad53 [Fix] Fix behaviour for rank deficient fits. Add test 2026-02-19 07:34:05 +01:00
Fabian Joswig
46d32683d3 [Fix] Migrate to odrpack because of scipy.odr deprecation in recent 
release
 2026-02-03 18:12:32 +01:00
Justus Kuhlmann
da399b7c02
 		Fix/check append rep (#277) 
* add option that the headers of an append-mode file can have different format

* add tests for irregular headers in append mode

* hotfix: fix bug in append start read implementation

* lint

* lint II
 2025-11-25 12:57:03 +01:00
Fabian Joswig
1002dd0e51 [chore] Bump version to v2.17.0-dev 2025-10-30 16:36:09 +01:00
Fabian Joswig
4cdddf0a76 [chore] Bump version and changelog v2.16.0 2025-10-30 16:34:05 +01:00
Justus Kuhlmann
da0a4cc40a
 		Feat/idl func (#275) 
* outsource function to get idl for append mode

* Expose option to define function for idl by the user.

* clean up args

* add tests

* lint
 2025-10-30 16:26:52 +01:00
Pia Leonie Jones Petrak
e0076ccea9
 		[Fix] corrected expected_chisquare by adding the number of priors (#274) 
* [Fix] corrected expected_chisquare by adding the number of priors

* test/fits_test.py: dof and expected chisquare the same in uncorrelated fit w. prior to uncorrelated data
 2025-10-22 15:36:01 +02:00
Fabian Joswig
85ae9d7563
 		[chore] Remove support for python 3.9 and bump python versions in runners (#273) 2025-10-19 12:59:20 +02:00
Fabian Joswig
a600a69bb9
 		[ci] Add python 3.14 runners for pytest workflow (#270) 
* [ci] Add python 3.14 runners for pytest workflow

* [ci] Deactivate -Werror option in pytest workflow to fix python 3.14
runner

* [ci] Run tests with Werror for all python versions but for 3.14
 2025-10-19 12:44:06 +02:00
Fabian Joswig
4c4173c461 [chore] Bump version to 2.16.0-dev 2025-10-19 12:32:52 +02:00
Fabian Joswig
6c7daac44b Merge branch 'develop' v2.15.1 2025-10-19 12:30:10 +02:00
Fabian Joswig
1d031d0eab [chore] Bump version and update changelog 2025-10-19 12:29:45 +02:00
Ruaidhrí
e0bfcabc0c
 		pyerrors/correlators.py: Allowing for None values in pe.Corr.prune (#272) 
* pyerrors/correlators.py: Allowing for None values in pe.Corr.prune

Closes: fjosw#271

* wip

* test/correlators_test.py: Adding test for updated prune method.

Closes #271
 2025-10-19 12:28:36 +02:00
Fabian Joswig
3e955d4976 [chore] Bump version to 2.16.0-dev 2025-10-10 17:38:02 +02:00
Fabian Joswig
dbe5912ca3 Merge branch 'develop' v2.15.0 2025-10-10 17:34:35 +02:00
Fabian Joswig
5bcbe5c2ff [chore] Bump version and update Changelog 2025-10-10 17:34:18 +02:00
Fabian Joswig
cf36d17a00 [CI] Ignore sinc test failure 2025-10-10 17:31:14 +02:00
Fabian Joswig
6521e16901 [CI] Ignore sinc test failure 2025-10-10 17:30:00 +02:00
s-kuberski
68e4633ae0
 		[Feat] Number of fit parameters can be explicitly passed to the fit functions (#269) 2025-10-09 13:14:17 +02:00
Fabian Joswig
d6e6a435a8
 		[ci] Re-enable fail on warning for pytest pipeline. (#265) 
* [ci] Re-enable fail on warning for pytest pipeline.

* [Fix] Use sqlite3 context managers in pandas module.

* [Fix] Add closing context.
 2025-05-05 17:09:40 +02:00
Alexander Puck Neuwirth
8183ee2ef4
 		setup.py: Drop deprecated license classifiers (#264) 
Closes: #263
 2025-05-05 10:52:22 +02:00
JanNeuendorf
dcb95265ac
 		Fixed index in GEVP example (#261) 
Co-authored-by: Fabian Joswig <fjosw@users.noreply.github.com>
 2025-04-22 10:26:20 +02:00
s-kuberski
934a61e124
 		[Fix] removed unnecessary lines that raised the flake8 error code F824 (#262) 
Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-04-22 10:19:14 +02:00
Fabian Joswig
3c36ab08c8 [Version] Bump version to 2.15.0-dev 2025-03-09 12:37:42 +01:00
Fabian Joswig
b2847a1f80 [Release] Bump version to 2.14.0 and update CHANGELOG v2.14.0 2025-03-09 12:35:29 +01:00
s-kuberski
17792418ed
 		[Fix] Removed the possibility to create an Obs from data on several replica (#258) 
* [Fix] Removed the possibility to create an Obs from data on several replica

* [Fix] extended tests and corrected a small bug in the previous commit

---------

Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-02-25 16:58:44 +01:00
Fabian Joswig
dd4f8525f7
 		[CI] Add ARM runner and bump macos runner python version to 3.12 (#260) 2025-02-19 18:23:56 +01:00
s-kuberski
5f5438b563
 		[Feat] Introduce checks of the provided inverse matrix for correlated fits (#259) 
Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-02-19 18:15:55 +01:00
s-kuberski
6ed6ce6113
 		[fix] Corrected an error message (#257) 
Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-02-13 19:43:56 +01:00
Fabian Joswig
7eabd68c5f
 		[CI] Speed up test workflow install phase by using uv (#254) 
* [CI] Speed up install phase by using uv

* [CI] Use uv in examples workflow

* [CI] Fix yml syntax

* [CI] Install uv into system env

* [CI] Add system install for examples workflow
 2025-01-10 09:36:05 +01:00
Justus Kuhlmann
9ff34c27d7
 		Fix/sfcf ensname (#253) 
* correct strings in _get_rep_names, add option for rep_sep

* doc

* add test for rep name getters
 2025-01-06 10:46:49 +01:00
Fabian Joswig
997d360db3
 		[ci] Add ruff workflow (#250) 
* [ci] Add ruff workflow

* [ci] Add src for ruff workflow

* [ci] Rename ruff worklow

* [ci] Adjust on for ruff workflow
 2024-12-24 17:52:08 +01:00
Fabian Joswig
3eac9214b4
 		[Fix] Ruff rules and more precise Excpetion types (#248) 
* [Fix] Fix test for membership should be 'not in' (E713)

* [Fix] Fix module imported but unused (F401)

* [Fix] More precise Exception types in dirac, obs and correlator
 2024-12-24 15:35:59 +01:00
Fabian Joswig
d908508120 [docs] Simplify README 2024-12-18 13:00:06 +01:00
Justus Kuhlmann
b1448a2703
 		Fix plateaus in correlator (#247) 2024-12-05 22:08:48 +01:00
Fabian Joswig
30bfb55981
 		[Feat] Provide derivatives for pow (#246) 
* [Feat] Provide manual derivatives for __pow__

* [Feat] Also applied changes to rpow

* [Test] Another pow test added.
 2024-11-26 17:52:27 +01:00
Fabian Joswig
0ce765a99d [Version] Bumped version to 2.14.0-dev 2024-11-03 17:07:29 +01:00
Fabian Joswig
c057ecffda [Release] Updated changelog and bumped version v2.13.0 2024-11-03 17:03:06 +01:00
Fabian Joswig
47fd72b814
 		[Build] Release workflow added. (#244) 2024-11-03 16:57:20 +01:00
Fabian Joswig
b43a2cbd34
 		[ci] Add python 3.13 to pytest workflow. (#242) 
* [ci] Add python 3.13 to pytest workflow.

* [ci] Remove py and pyarrow from pytest workflow
 2024-10-14 23:27:24 +02:00