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Author SHA1 Message Date
Fabian Joswig
a600a69bb9
 		[ci] Add python 3.14 runners for pytest workflow (#270) 
* [ci] Add python 3.14 runners for pytest workflow

* [ci] Deactivate -Werror option in pytest workflow to fix python 3.14
runner

* [ci] Run tests with Werror for all python versions but for 3.14
 2025-10-19 12:44:06 +02:00
Fabian Joswig
4c4173c461 [chore] Bump version to 2.16.0-dev 2025-10-19 12:32:52 +02:00
Fabian Joswig
6c7daac44b Merge branch 'develop' v2.15.1 2025-10-19 12:30:10 +02:00
Fabian Joswig
1d031d0eab [chore] Bump version and update changelog 2025-10-19 12:29:45 +02:00
Ruaidhrí
e0bfcabc0c
 		pyerrors/correlators.py: Allowing for None values in pe.Corr.prune (#272) 
* pyerrors/correlators.py: Allowing for None values in pe.Corr.prune

Closes: fjosw#271

* wip

* test/correlators_test.py: Adding test for updated prune method.

Closes #271
 2025-10-19 12:28:36 +02:00
Fabian Joswig
3e955d4976 [chore] Bump version to 2.16.0-dev 2025-10-10 17:38:02 +02:00
Fabian Joswig
dbe5912ca3 Merge branch 'develop' v2.15.0 2025-10-10 17:34:35 +02:00
Fabian Joswig
5bcbe5c2ff [chore] Bump version and update Changelog 2025-10-10 17:34:18 +02:00
Fabian Joswig
cf36d17a00 [CI] Ignore sinc test failure 2025-10-10 17:31:14 +02:00
Fabian Joswig
6521e16901 [CI] Ignore sinc test failure 2025-10-10 17:30:00 +02:00
s-kuberski
68e4633ae0
 		[Feat] Number of fit parameters can be explicitly passed to the fit functions (#269) 2025-10-09 13:14:17 +02:00
Fabian Joswig
d6e6a435a8
 		[ci] Re-enable fail on warning for pytest pipeline. (#265) 
* [ci] Re-enable fail on warning for pytest pipeline.

* [Fix] Use sqlite3 context managers in pandas module.

* [Fix] Add closing context.
 2025-05-05 17:09:40 +02:00
Alexander Puck Neuwirth
8183ee2ef4
 		setup.py: Drop deprecated license classifiers (#264) 
Closes: #263
 2025-05-05 10:52:22 +02:00
JanNeuendorf
dcb95265ac
 		Fixed index in GEVP example (#261) 
Co-authored-by: Fabian Joswig <fjosw@users.noreply.github.com>
 2025-04-22 10:26:20 +02:00
s-kuberski
934a61e124
 		[Fix] removed unnecessary lines that raised the flake8 error code F824 (#262) 
Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-04-22 10:19:14 +02:00
Fabian Joswig
3c36ab08c8 [Version] Bump version to 2.15.0-dev 2025-03-09 12:37:42 +01:00
Fabian Joswig
b2847a1f80 [Release] Bump version to 2.14.0 and update CHANGELOG v2.14.0 2025-03-09 12:35:29 +01:00
s-kuberski
17792418ed
 		[Fix] Removed the possibility to create an Obs from data on several replica (#258) 
* [Fix] Removed the possibility to create an Obs from data on several replica

* [Fix] extended tests and corrected a small bug in the previous commit

---------

Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-02-25 16:58:44 +01:00
Fabian Joswig
dd4f8525f7
 		[CI] Add ARM runner and bump macos runner python version to 3.12 (#260) 2025-02-19 18:23:56 +01:00
s-kuberski
5f5438b563
 		[Feat] Introduce checks of the provided inverse matrix for correlated fits (#259) 
Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-02-19 18:15:55 +01:00
s-kuberski
6ed6ce6113
 		[fix] Corrected an error message (#257) 
Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
 2025-02-13 19:43:56 +01:00
Fabian Joswig
7eabd68c5f
 		[CI] Speed up test workflow install phase by using uv (#254) 
* [CI] Speed up install phase by using uv

* [CI] Use uv in examples workflow

* [CI] Fix yml syntax

* [CI] Install uv into system env

* [CI] Add system install for examples workflow
 2025-01-10 09:36:05 +01:00
Justus Kuhlmann
9ff34c27d7
 		Fix/sfcf ensname (#253) 
* correct strings in _get_rep_names, add option for rep_sep

* doc

* add test for rep name getters
 2025-01-06 10:46:49 +01:00
Fabian Joswig
997d360db3
 		[ci] Add ruff workflow (#250) 
* [ci] Add ruff workflow

* [ci] Add src for ruff workflow

* [ci] Rename ruff worklow

* [ci] Adjust on for ruff workflow
 2024-12-24 17:52:08 +01:00
Fabian Joswig
3eac9214b4
 		[Fix] Ruff rules and more precise Excpetion types (#248) 
* [Fix] Fix test for membership should be 'not in' (E713)

* [Fix] Fix module imported but unused (F401)

* [Fix] More precise Exception types in dirac, obs and correlator
 2024-12-24 15:35:59 +01:00
Fabian Joswig
d908508120 [docs] Simplify README 2024-12-18 13:00:06 +01:00
Justus Kuhlmann
b1448a2703
 		Fix plateaus in correlator (#247) 2024-12-05 22:08:48 +01:00
Fabian Joswig
30bfb55981
 		[Feat] Provide derivatives for pow (#246) 
* [Feat] Provide manual derivatives for __pow__

* [Feat] Also applied changes to rpow

* [Test] Another pow test added.
 2024-11-26 17:52:27 +01:00
Fabian Joswig
0ce765a99d [Version] Bumped version to 2.14.0-dev 2024-11-03 17:07:29 +01:00
Fabian Joswig
c057ecffda [Release] Updated changelog and bumped version v2.13.0 2024-11-03 17:03:06 +01:00
Fabian Joswig
47fd72b814
 		[Build] Release workflow added. (#244) 2024-11-03 16:57:20 +01:00
Fabian Joswig
b43a2cbd34
 		[ci] Add python 3.13 to pytest workflow. (#242) 
* [ci] Add python 3.13 to pytest workflow.

* [ci] Remove py and pyarrow from pytest workflow
 2024-10-14 23:27:24 +02:00
s-kuberski
4b1bb0872a
 		fix: corrected bug that prevented combined fits with multiple x-obs in some cases (#241) 
* fix: corrected bug that prevented combined fits with multiple x-obs in some cases

* made test more complex

* [Fix] Slightly increase tolerance for matrix function test.

* Adapt test_merge_idx to compare lists

---------

Co-authored-by: Simon Kuberski <simon.kuberski@cern.ch>
Co-authored-by: Fabian Joswig <fjosw@users.noreply.github.com>
 2024-09-13 19:15:59 +02:00
Pia Leonie Jones Petrak
1d6f7f65c0
 		Feature/corr matrix and inverse cov matrix as input in least squares function for correlated fits (#223) 
* feat: corr_matrix kwargs as input for least squares fit

* feat/tests: inverse covariance matrix and correlation matrix kwargs as input for least squares function

* feat/tests/example: reduced new kwargs to 'inv_chol_cov_matrix' and outsourced the inversion & cholesky decomposition of the covariance matrix (function 'invert_corr_cov_cholesky(corr, covdiag)')

* tests: added tests for inv_chol_cov_matrix kwarg for the case of combined fits

* fix: renamed covdiag to inverrdiag needed for the cholesky decomposition and corrected its documentation

* examples: added an example of a correlated combined fit to the least_squares documentation

* feat/tests/fix(of typos): added function 'sort_corr()' (and a test of it) to sort correlation matrix according to a list of alphabetically sorted keys

* docs: added more elaborate documentation/example of sort_corr(), fixed typos in documentation of invert_corr_cov_cholesky()
 2024-09-13 08:35:10 +02:00
Fabian Joswig
3830e3f777 [Build] Bump version to 2.13.0-dev 2024-08-22 22:08:40 +02:00
Fabian Joswig
041d53e5ae
 		[Release] Prepare v2.12.0 (#240) v2.12.0 
* [docs] Changelog updated.

* [build] Bump version.
 2024-08-22 22:04:54 +02:00
Fabian Joswig
55cd782909
 		[Build] Remove python3.8 and add support for numpy 2 (#239) 
* [build] Remove python 3.8 and bump dependency version.

* [Build] Remove python 3.8 from ci and update README python badge.

* [ci] Temporarily remove -Werror from pytest workflow.

* [ci] Remove python 3.8 from examples workflow.

* [Build] Bump further dependency versions.
 2024-08-22 21:59:07 +02:00
Justus Kuhlmann
7ca9d4ee41
 		corrected sfcf_read_multi behaviour (#238) 2024-08-15 19:00:52 +02:00
Justus Kuhlmann
d17513f043
 		bugfix: read bb and bib/bi corr in one with keyed_out (#237) 2024-06-19 12:55:30 +02:00
Justus Kuhlmann
0e8d68a1f0
 		erase print rep data (#235) 2024-05-13 22:27:17 +02:00
Fabian Joswig
fce6bcd1f8 [build] Bump version to v2.12.0-dev 2024-04-25 20:55:35 +02:00
Fabian Joswig
e23373d5ee [release] Update changelog and bump version v2.11.1 2024-04-25 20:50:36 +02:00
s-kuberski
db612597d2
 		[fix] Handle missing replia (#232) 
* [fix] First version of a fix to cope with missing replica.

* [fix] added test for missing replica

* [fix] refactored fix for missing replica, modified tests

* [fix] refinement of tests
 2024-04-25 20:45:53 +02:00
Fabian Joswig
43bd99b6c7
 		[fix] Numpy 2 breaking changes in tests (#234) 2024-04-17 14:53:34 +02:00
Fabian Joswig
9f46bf8966 [build] Version bumped to v2.12.0-dev 2024-04-01 16:22:08 +02:00
Fabian Joswig
1fce785597 [Build] Version bumped to 2.11, CHANGELOG updated, numpy<2 requirement v2.11.0 
added.
 2024-04-01 16:13:48 +02:00
Justus Kuhlmann
254a19f321
 		Catch error if no replica are found in the geiven directory (#230) 2024-03-25 15:50:19 +01:00
Fabian Joswig
0df5882d1f
 		[ci] Include python 3.12 in ci after new dateutils release. (#229) 2024-03-01 07:14:01 +01:00
Justus Kuhlmann
b930fab9c2
 		Fix keyword files with list of lists (#226) 
* first impl. handle reps with list of lists

* implement explicit type checks
 2024-02-18 13:39:35 +01:00
Fabian Joswig
43383acead
 		[ci] Update actions to use Node.js 20 (#228) 2024-02-06 17:54:33 +01:00