749 commits

Author	SHA1	Message	Date
jkuhl-uni	b55e410dcf	input/__init__ edited to include utils	2021-12-17 15:20:04 +01:00
jkuhl-uni	c5292f8342	implemented idl into sfcf-read method	2021-12-17 15:16:17 +01:00
jkuhl-uni	5e5a9df404	hotfix, missing kwarg files in read_rwms method	2021-12-17 12:08:08 +01:00
jkuhl-uni	307738c4fd	Merge branch 'fjosw:develop' into feature/input_2.0	2021-12-16 11:11:28 +01:00
jkuhl-uni	efa8d8a91d	beta version of the openQCD.py input method	2021-12-15 12:00:11 +01:00
Simon Kuberski	5338982060	Allow Obs in json format to be pure Covobs, i.e., to have empty deltas	2021-12-14 16:27:05 +01:00
Simon Kuberski	76b483d730	Pretty output for cov and grad in json	2021-12-14 15:54:52 +01:00
Simon Kuberski	b7bc508dcf	Added covobs to json file format	2021-12-14 15:47:14 +01:00
Simon Kuberski	16ba1c1ee0	Removed parameter covobs from Obs.__init__	2021-12-14 14:15:40 +01:00
Simon Kuberski	588d0045f2	Removed unnecessary entries for idl and shape in case of covobs. Changed Obs.covobs to Obs._covobs	2021-12-14 13:07:20 +01:00
Fabian Joswig	68a9a962d7	docs: docstring of covariance adjusted.	2021-12-13 17:11:26 +00:00
Fabian Joswig	ec20ee38a6	feat!: covariance replaced by covariance2, window altered to minimum of ... the window of the two observables. Tests adjusted.	2021-12-13 17:06:03 +00:00
Fabian Joswig	3fd63f8b67	refactor: bare excepts removed.	2021-12-13 14:47:57 +00:00
Fabian Joswig	7e0308b155	docs: doc extended, typos corrected.	2021-12-11 23:06:07 +00:00
Fabian Joswig	20edefad43	docs: Introduction restructured	2021-12-11 22:59:01 +00:00
Fabian Joswig	5f2e33ccda	feat: repetative len(sample) calles reintroduced	2021-12-10 16:31:42 +00:00
Fabian Joswig	1ab16612d9	feat: changed the way empty obs are initialized	2021-12-10 16:24:40 +00:00
Fabian Joswig	7b433c8df7	refactor: unneeded parameter empty removed	2021-12-10 16:12:38 +00:00
Fabian Joswig	fe03bf9844	feat: linalg.einsum optimized	2021-12-10 15:39:57 +00:00
Fabian Joswig	207a60c085	refactor: linalg.slogdet removed	2021-12-10 14:41:56 +00:00
Fabian Joswig	a2a799b591	feat: linalg.det added, test added	2021-12-10 14:39:14 +00:00
Fabian Joswig	67ca53681a	fix: workaround for non Obs valued objects in derived_observable now ... also works outside of array mode.	2021-12-10 14:37:58 +00:00
Fabian Joswig	525dea0209	refactor: removed code from autograd master, test adjusted	2021-12-10 14:26:05 +00:00
Fabian Joswig	f6dc78f587	feat!: json format timezone is now outputted in +0000 format.	2021-12-10 10:40:49 +00:00
Fabian Joswig	2ce73fb3f2	fix: import_json_string now correctly reconstructs obs from string, test ... added	2021-12-10 10:37:50 +00:00
Fabian Joswig	b49c707127	refactor: created function import_json_string	2021-12-09 15:49:01 +00:00
Fabian Joswig	352b93ee2c	fix: the covariance functions now correctly check whether the ... gamma_method was run. Tests added.	2021-12-09 13:06:49 +00:00
Fabian Joswig	e213b37413	fix: prior fit routine adjusted to work with iminuit version >= 2	2021-12-09 12:50:52 +00:00
Fabian Joswig	071d550d1d	feat: priors in fits replaced by covobs, random hash added to avoid ... prior collisions.	2021-12-09 12:36:28 +00:00
Fabian Joswig	c2ff8c715a	refactor!: ks_test removed from develop for now.	2021-12-09 10:20:13 +00:00
Fabian Joswig	87c50f54c0	refactor!: fit_general deprecated and moved to tests	2021-12-09 10:11:31 +00:00
Fabian Joswig	8879e6b382	refactor: check in Obs.__init__ withe means!=None removed which could ... never be reached.	2021-12-09 09:44:50 +00:00
Fabian Joswig	083247389b	fix: bug occurring when Corr.fit is called without fit range fixed	2021-12-08 22:33:08 +00:00
Fabian Joswig	ae53daa915	refactor: calculation of N in Obs.__init__ optimized	2021-12-08 16:14:48 +00:00
Fabian Joswig	2702b5519d	refactor: loop and if clause eliminated in Obs.__init__	2021-12-08 16:11:44 +00:00
Fabian Joswig	52705d8fcd	refactor: minor simplifications in derived_observable	2021-12-08 15:26:27 +00:00
Fabian Joswig	140268c1c9	refactor: two loops over new_sample_names merged.	2021-12-08 15:17:32 +00:00
Fabian Joswig	3f0040a815	refactor: generation of new r_values in derived_observable simplified.	2021-12-08 15:09:40 +00:00
Fabian Joswig	5ced94e086	feat: check for non Obs objects in derived observable optimized and only performed in array mode	2021-12-08 15:00:44 +00:00
Fabian Joswig	1db59a9fdc	feat: derived_observable now uses covobs when an input is not an Obs. ... This should result in a small speedup for all operations as one iteration over all data can be dropped.	2021-12-08 14:34:48 +00:00
Fabian Joswig	ea237ed849	Merge pull request #24 from s-kuberski/feature/covobs ... Feature/covobs	2021-12-08 09:42:38 +00:00
Simon Kuberski	a5cf0270d3	Hidden _set_cov and _set_grad, modified test for equality of covs	2021-12-08 08:55:40 +01:00
Fabian Joswig	9ddadaf6b3	fix: fits and root now work when the value of the zeroth input is ... exactly zero. Tests extended.	2021-12-07 18:40:36 +00:00
Fabian Joswig	968cdf3181	fix: deprecated get_fmin call removed in fits	2021-12-07 17:34:02 +00:00
Simon Kuberski	7c5465d828	Added tests when changing cov and grad in covobs	2021-12-07 17:33:40 +01:00
Simon Kuberski	3190140023	Ensure fixed dimensions of cov and grad in covobs. Allow for differences of O(1e-14) in two cov matrices, when combining observables	2021-12-07 17:15:46 +01:00
Fabian Joswig	370cd34e0f	refactor!: covariance3 removed	2021-12-07 08:31:24 +00:00
Fabian Joswig	f223b12cc2	fix: instances of plot.show changed to plot.draw in fit module	2021-12-07 08:27:24 +00:00
Fabian Joswig	e8bcf8de6f	fix: array mode now also works with covobs with N>1	2021-12-07 08:09:38 +00:00
Fabian Joswig	df6b151c13	fix: array mode now works with elements defined on different ensembles	2021-12-07 07:36:24 +00:00