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515 commits

Author SHA1 Message Date
Fabian Joswig
5d0d56596f refactor: redundant tree parameter removed from 
input/hadrons/read_meson_hd5
 2022-01-05 20:08:08 +01:00
jkuhl-uni
ebdc17aa66 implemented read_sfcf for append-mode output, bug fixes 2022-01-03 21:34:04 +01:00
jkuhl-uni
31c2ada963 corrected small error in init 2022-01-03 14:46:19 +01:00
jkuhl-uni
b8b1d36125 small bug fixes after first pull request 2022-01-03 14:41:14 +01:00
jkuhl-uni
76b7f159aa read_qtop now also hands over idl of the result Obs 2022-01-03 14:40:12 +01:00
jkuhl-uni
01ada964b2 added read_qtop_sector method outsourcing funtionality of former 'full' key 2022-01-03 11:20:25 +01:00
Fabian Joswig
773fd8e4c5 docs: documentation of Corr objects added 2021-12-23 16:42:53 +01:00
JanNeuendorf
145a211bd0
Some more changes to corr 
- GEVP method can return lists of eigenvector by solving the GEVP at multiple timeslices. The ordering is done according to arXiv:2004.10472 [hep-lat] 
- The projection method can deal with those lists 
- Constructor for Hankel matrix from a single corr 
- typechecks allow for complex-content 
- .real and .imag work on corrs
- But everything else with CObs does not yet work.
 2021-12-23 15:23:59 +01:00
Fabian Joswig
8d8fa82bbe feat: Path can now be specified in Corr.dump 2021-12-23 14:42:57 +01:00
Fabian Joswig
b8c26fd41d refactor: unnecessary code in scalar_mat_op removed 2021-12-23 14:26:17 +01:00
Fabian Joswig
1ba7566a62 refactor!: Code for numerical differentation of linalg operations 
removed
 2021-12-23 14:19:24 +01:00
Fabian Joswig
b7da7f4b7e refactor: unnecessary overloading of np.sinc removed, tests added 2021-12-23 12:29:42 +01:00
Fabian Joswig
64a8bc690f refactor!: Obs.print method removed 2021-12-23 12:21:40 +01:00
Fabian Joswig
c8cb0e4cb8 feat: epsilon tensors moved to dirac submodule, tests added 2021-12-23 12:00:10 +01:00
Fabian Joswig
b50346dcf3 feat: rank4 epsilon tensor added 2021-12-21 20:42:56 +01:00
Fabian Joswig
bc220fceaf fix: get_item and reweighted now work with padded correlators. 2021-12-20 11:35:04 +01:00
jkuhl-uni
b55e410dcf input/__init__ edited to include utils 2021-12-17 15:20:04 +01:00
jkuhl-uni
c5292f8342 implemented idl into sfcf-read method 2021-12-17 15:16:17 +01:00
jkuhl-uni
5e5a9df404 hotfix, missing kwarg files in read_rwms method 2021-12-17 12:08:08 +01:00
jkuhl-uni
307738c4fd
Merge branch 'fjosw:develop' into feature/input_2.0 2021-12-16 11:11:28 +01:00
jkuhl-uni
efa8d8a91d beta version of the openQCD.py input method 2021-12-15 12:00:11 +01:00
Simon Kuberski
5338982060 Allow Obs in json format to be pure Covobs, i.e., to have empty deltas 2021-12-14 16:27:05 +01:00
Simon Kuberski
76b483d730 Pretty output for cov and grad in json 2021-12-14 15:54:52 +01:00
Simon Kuberski
b7bc508dcf Added covobs to json file format 2021-12-14 15:47:14 +01:00
Simon Kuberski
16ba1c1ee0 Removed parameter covobs from Obs.__init__ 2021-12-14 14:15:40 +01:00
Simon Kuberski
588d0045f2 Removed unnecessary entries for idl and shape in case of covobs. Changed Obs.covobs to Obs._covobs 2021-12-14 13:07:20 +01:00
Fabian Joswig
68a9a962d7 docs: docstring of covariance adjusted. 2021-12-13 17:11:26 +00:00
Fabian Joswig
ec20ee38a6 feat!: covariance replaced by covariance2, window altered to minimum of 
the window of the two observables. Tests adjusted.
 2021-12-13 17:06:03 +00:00
Fabian Joswig
3fd63f8b67 refactor: bare excepts removed. 2021-12-13 14:47:57 +00:00
Fabian Joswig
7e0308b155 docs: doc extended, typos corrected. 2021-12-11 23:06:07 +00:00
Fabian Joswig
20edefad43 docs: Introduction restructured 2021-12-11 22:59:01 +00:00
Fabian Joswig
5f2e33ccda feat: repetative len(sample) calles reintroduced 2021-12-10 16:31:42 +00:00
Fabian Joswig
1ab16612d9 feat: changed the way empty obs are initialized 2021-12-10 16:24:40 +00:00
Fabian Joswig
7b433c8df7 refactor: unneeded parameter empty removed 2021-12-10 16:12:38 +00:00
Fabian Joswig
fe03bf9844 feat: linalg.einsum optimized 2021-12-10 15:39:57 +00:00
Fabian Joswig
207a60c085 refactor: linalg.slogdet removed 2021-12-10 14:41:56 +00:00
Fabian Joswig
a2a799b591 feat: linalg.det added, test added 2021-12-10 14:39:14 +00:00
Fabian Joswig
67ca53681a fix: workaround for non Obs valued objects in derived_observable now 
also works outside of array mode.
 2021-12-10 14:37:58 +00:00
Fabian Joswig
525dea0209 refactor: removed code from autograd master, test adjusted 2021-12-10 14:26:05 +00:00
Fabian Joswig
f6dc78f587 feat!: json format timezone is now outputted in +0000 format. 2021-12-10 10:40:49 +00:00
Fabian Joswig
2ce73fb3f2 fix: import_json_string now correctly reconstructs obs from string, test 
added
 2021-12-10 10:37:50 +00:00
Fabian Joswig
b49c707127 refactor: created function import_json_string 2021-12-09 15:49:01 +00:00
Fabian Joswig
352b93ee2c fix: the covariance functions now correctly check whether the 
gamma_method was run. Tests added.
 2021-12-09 13:06:49 +00:00
Fabian Joswig
e213b37413 fix: prior fit routine adjusted to work with iminuit version >= 2 2021-12-09 12:50:52 +00:00
Fabian Joswig
071d550d1d feat: priors in fits replaced by covobs, random hash added to avoid 
prior collisions.
 2021-12-09 12:36:28 +00:00
Fabian Joswig
c2ff8c715a refactor!: ks_test removed from develop for now. 2021-12-09 10:20:13 +00:00
Fabian Joswig
87c50f54c0 refactor!: fit_general deprecated and moved to tests 2021-12-09 10:11:31 +00:00
Fabian Joswig
8879e6b382 refactor: check in Obs.__init__ withe means!=None removed which could 
never be reached.
 2021-12-09 09:44:50 +00:00
Fabian Joswig
083247389b fix: bug occurring when Corr.fit is called without fit range fixed 2021-12-08 22:33:08 +00:00
Fabian Joswig
ae53daa915 refactor: calculation of N in Obs.__init__ optimized 2021-12-08 16:14:48 +00:00