mirror of
https://github.com/fjosw/pyerrors.git
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Impr/fix refactor sfcf read (#164)
* refactor read_sfcf * adding tests for find_corr and read_compact_file * add necessary broken data for tests * fixed appended mode reading * factored out sort_names and find_files * now also using sort_files in sfcf.py * edited tests to fit with new structure * added find_files function * shifted helpfunctions to bottom of file * removed some debug lines * linting * Fixed requested changes, added silent mode * added Exception if correlator is not found by read_append_rep * use tmp_path fixture * linting silent keyword * try to fix testing for a_bb * tests: Exception testing in test_find_corr made more explicit. --------- Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>
This commit is contained in:
Justus Kuhlmann
GitHub
parent
991199a680
commit
41fec09816
7 changed files with 880 additions and 315 deletions
472
tests/data/sfcf_test/broken_data_c/data_c_r0/data_c_r0_n1
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472
tests/data/sfcf_test/broken_data_c/data_c_r0/data_c_r0_n1
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@ -0,0 +1,472 @@
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version 2.1
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date 2022-01-19 11:03:58 +0100
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host r04n07.palma.wwu
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@ -1,4 +1,3 @@
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import os
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import numpy as np
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import pyerrors as pe
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import pytest
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@ -136,7 +135,7 @@ def test_read_ms5_xsf():
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def test_find_files():
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path = './tests//data/openqcd_test/'
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path = './tests/data/openqcd_test/'
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prefix = "ms5_xsf_T24L16"
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qc = 'dd'
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|
|
@ -166,10 +165,3 @@ def test_find_files():
|
|||
with pytest.raises(Exception):
|
||||
pe.input.openQCD._find_files(path, fpre, "ms5_xsf_" + qc, "dat")
|
||||
|
||||
|
||||
def test_sort_names():
|
||||
my_list = ['sfqcd_r1_id5', 'sfqcd_r10_id5', 'sfqcd_r7_id5', 'sfqcd_r2_id5', 'sfqcd_r2_id9', 'sfqcd_r10_id4']
|
||||
presorted_list = ['sfqcd_r1_id5', 'sfqcd_r2_id5', 'sfqcd_r2_id9', 'sfqcd_r7_id5', 'sfqcd_r10_id4', 'sfqcd_r10_id5']
|
||||
|
||||
sorted_list = pe.input.openQCD._sort_names(my_list)
|
||||
assert (all([sorted_list[i] == presorted_list[i] for i in range(len(sorted_list))]))
|
||||
|
|
|
|||
|
|
@ -4,121 +4,122 @@ import inspect
|
|||
import pyerrors as pe
|
||||
import pyerrors.input.sfcf as sfin
|
||||
import shutil
|
||||
import pytest
|
||||
|
||||
current_dir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
|
||||
parent_dir = os.path.dirname(current_dir)
|
||||
sys.path.insert(0, parent_dir)
|
||||
|
||||
|
||||
def build_test_environment(env_type, cfgs, reps):
|
||||
def build_test_environment(path, env_type, cfgs, reps):
|
||||
shutil.copytree("tests/data/sfcf_test/data_"+env_type, (path + "/data_" + env_type))
|
||||
if env_type == "o":
|
||||
for i in range(2,cfgs+1):
|
||||
shutil.copytree("tests/data/sfcf_test/data_o/test_r0/cfg1","tests/data/sfcf_test/data_o/test_r0/cfg"+str(i))
|
||||
shutil.copytree(path + "/data_o/test_r0/cfg1", path + "/data_o/test_r0/cfg"+str(i))
|
||||
for i in range(1,reps):
|
||||
shutil.copytree("tests/data/sfcf_test/data_o/test_r0", "tests/data/sfcf_test/data_o/test_r"+str(i))
|
||||
shutil.copytree(path + "/data_o/test_r0", path + "/data_o/test_r"+str(i))
|
||||
elif env_type == "c":
|
||||
for i in range(2,cfgs+1):
|
||||
shutil.copy("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
|
||||
shutil.copy(path + "/data_c/data_c_r0/data_c_r0_n1", path + "/data_c/data_c_r0/data_c_r0_n"+str(i))
|
||||
for i in range(1,reps):
|
||||
os.mkdir("tests/data/sfcf_test/data_c/data_c_r"+str(i))
|
||||
os.mkdir(path + "/data_c/data_c_r"+str(i))
|
||||
for j in range(1,cfgs+1):
|
||||
shutil.copy("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","tests/data/sfcf_test/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
|
||||
shutil.copy(path + "/data_c/data_c_r0/data_c_r0_n1",path + "/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
|
||||
|
||||
|
||||
|
||||
def clean_test_environment(env_type, cfgs, reps):
|
||||
if env_type == "o":
|
||||
for i in range(1,reps):
|
||||
shutil.rmtree("tests/data/sfcf_test/data_o/test_r"+str(i))
|
||||
for i in range(2,cfgs+1):
|
||||
shutil.rmtree("tests/data/sfcf_test/data_o/test_r0/cfg"+str(i))
|
||||
elif env_type == "c":
|
||||
for i in range(1,reps):
|
||||
shutil.rmtree("tests/data/sfcf_test/data_c/data_c_r"+str(i))
|
||||
for i in range(2,cfgs+1):
|
||||
os.remove("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
|
||||
|
||||
|
||||
def test_o_bb():
|
||||
build_test_environment("o",5,3)
|
||||
f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "f_1",quarks="lquark lquark", wf = 0, wf2=0, version = "2.0", corr_type="bb")
|
||||
def test_o_bb(tmp_path):
|
||||
build_test_environment(str(tmp_path), "o",5,3)
|
||||
f_1 = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "f_1",quarks="lquark lquark", wf = 0, wf2=0, version = "2.0", corr_type="bb")
|
||||
print(f_1)
|
||||
clean_test_environment("o",5,3)
|
||||
assert len(f_1) == 1
|
||||
assert f_1[0].value == 351.1941525454502
|
||||
|
||||
def test_o_bi():
|
||||
build_test_environment("o",5,3)
|
||||
f_A = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "f_A",quarks="lquark lquark", wf = 0, version = "2.0")
|
||||
def test_o_bi(tmp_path):
|
||||
build_test_environment(str(tmp_path), "o",5,3)
|
||||
f_A = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "f_A",quarks="lquark lquark", wf = 0, version = "2.0")
|
||||
print(f_A)
|
||||
clean_test_environment("o",5,3)
|
||||
assert len(f_A) == 3
|
||||
assert f_A[0].value == 65.4711887279723
|
||||
assert f_A[1].value == 1.0447210336915187
|
||||
assert f_A[2].value == -41.025094911185185
|
||||
|
||||
def test_o_bib():
|
||||
build_test_environment("o",5,3)
|
||||
f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0", corr_type="bib")
|
||||
def test_o_bib(tmp_path):
|
||||
build_test_environment(str(tmp_path), "o",5,3)
|
||||
f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_o", "test", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0", corr_type="bib")
|
||||
print(f_V0)
|
||||
clean_test_environment("o",5,3)
|
||||
assert len(f_V0) == 3
|
||||
assert f_V0[0] == 683.6776090085115
|
||||
assert f_V0[1] == 661.3188585582334
|
||||
assert f_V0[2] == 683.6776090081005
|
||||
|
||||
def test_c_bb():
|
||||
build_test_environment("c",5,3)
|
||||
f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0c", corr_type="bb")
|
||||
def test_c_bb(tmp_path):
|
||||
build_test_environment(str(tmp_path), "c",5,3)
|
||||
f_1 = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0c", corr_type="bb")
|
||||
print(f_1)
|
||||
clean_test_environment("c",5,3)
|
||||
assert len(f_1) == 1
|
||||
assert f_1[0].value == 351.1941525454502
|
||||
|
||||
def test_c_bi():
|
||||
build_test_environment("c",5,3)
|
||||
f_A = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "f_A", quarks="lquark lquark", wf = 0, version = "2.0c")
|
||||
def test_c_bi(tmp_path):
|
||||
build_test_environment(str(tmp_path), "c",5,3)
|
||||
f_A = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "f_A", quarks="lquark lquark", wf = 0, version = "2.0c")
|
||||
print(f_A)
|
||||
clean_test_environment("c",5,3)
|
||||
assert len(f_A) == 3
|
||||
assert f_A[0].value == 65.4711887279723
|
||||
assert f_A[1].value == 1.0447210336915187
|
||||
assert f_A[2].value == -41.025094911185185
|
||||
|
||||
def test_c_bib():
|
||||
build_test_environment("c",5,3)
|
||||
f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0c", corr_type="bib")
|
||||
def test_c_bib(tmp_path):
|
||||
build_test_environment(str(tmp_path), "c",5,3)
|
||||
f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0c", corr_type="bib")
|
||||
print(f_V0)
|
||||
clean_test_environment("c",5,3)
|
||||
assert len(f_V0) == 3
|
||||
assert f_V0[0] == 683.6776090085115
|
||||
assert f_V0[1] == 661.3188585582334
|
||||
assert f_V0[2] == 683.6776090081005
|
||||
|
||||
def test_a_bb():
|
||||
build_test_environment("a",5,3)
|
||||
def test_a_bb(tmp_path):
|
||||
f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", corr_type="bb")
|
||||
print(f_1)
|
||||
clean_test_environment("a",5,3)
|
||||
assert len(f_1) == 1
|
||||
assert f_1[0].value == 351.1941525454502
|
||||
|
||||
def test_a_bi():
|
||||
build_test_environment("a",5,3)
|
||||
def test_a_bi(tmp_path):
|
||||
f_A = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
|
||||
print(f_A)
|
||||
clean_test_environment("a",5,3)
|
||||
assert len(f_A) == 3
|
||||
assert f_A[0].value == 65.4711887279723
|
||||
assert f_A[1].value == 1.0447210336915187
|
||||
assert f_A[2].value == -41.02509491118518
|
||||
|
||||
def test_a_bib():
|
||||
build_test_environment("a",5,3)
|
||||
def test_a_bib(tmp_path):
|
||||
f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", corr_type="bib")
|
||||
print(f_V0)
|
||||
clean_test_environment("a",5,3)
|
||||
assert len(f_V0) == 3
|
||||
assert f_V0[0] == 683.6776090085115
|
||||
assert f_V0[1] == 661.3188585582334
|
||||
assert f_V0[2] == 683.6776090081005
|
||||
|
||||
def test_find_corr(tmp_path):
|
||||
pattern = 'name ' + "f_A" + '\nquarks ' + "lquark lquark" + '\noffset ' + str(0) + '\nwf ' + str(0)
|
||||
start_read, T = sfin._find_correlator("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1", "2.0c", pattern, False)
|
||||
assert start_read == 21
|
||||
assert T == 3
|
||||
|
||||
pattern = 'name ' + "f_X" + '\nquarks ' + "lquark lquark" + '\noffset ' + str(0) + '\nwf ' + str(0)
|
||||
with pytest.raises(ValueError):
|
||||
sfin._find_correlator("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1", "2.0c", pattern, False)
|
||||
|
||||
pattern = 'name ' + "f_A" + '\nquarks ' + "lquark lquark" + '\noffset ' + str(0) + '\nwf ' + str(0)
|
||||
with pytest.raises(ValueError):
|
||||
sfin._find_correlator("tests/data/sfcf_test/broken_data_c/data_c_r0/data_c_r0_n1", "2.0c", pattern, False)
|
||||
|
||||
def test_read_compact_file(tmp_path):
|
||||
rep_path = "tests/data/sfcf_test/broken_data_c/data_c_r0/"
|
||||
config_file = "data_c_r0_n1"
|
||||
start_read = 469
|
||||
T = 3
|
||||
b2b = False
|
||||
name = "F_V0"
|
||||
im = False
|
||||
with pytest.raises(Exception):
|
||||
sfin._read_compact_file(rep_path, config_file, start_read, T, b2b, name, im)
|
||||
|
|
|
|||
9
tests/utils_in_test.py
Normal file
9
tests/utils_in_test.py
Normal file
|
|
@ -0,0 +1,9 @@
|
|||
import pyerrors as pe
|
||||
|
||||
|
||||
def test_sort_names():
|
||||
my_list = ['sfqcd_r1_id5', 'sfqcd_r10_id5', 'sfqcd_r7_id5', 'sfqcd_r2_id5', 'sfqcd_r2_id9', 'sfqcd_r10_id4']
|
||||
presorted_list = ['sfqcd_r1_id5', 'sfqcd_r2_id5', 'sfqcd_r2_id9', 'sfqcd_r7_id5', 'sfqcd_r10_id4', 'sfqcd_r10_id5']
|
||||
|
||||
sorted_list = pe.input.utils.sort_names(my_list)
|
||||
assert (all([sorted_list[i] == presorted_list[i] for i in range(len(sorted_list))]))
|
||||
Loading…
Add table
Add a link
Reference in a new issue