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pyerrors/docs/pyerrors/input/dobs.html
fjosw fce67284f3 Documentation updated
2023-06-22 12:54:49 +00:00

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<h2>API Documentation</h2>
<ul class="memberlist">
<li>
<a class="function" href="#create_pobs_string">create_pobs_string</a>
</li>
<li>
<a class="function" href="#write_pobs">write_pobs</a>
</li>
<li>
<a class="function" href="#read_pobs">read_pobs</a>
</li>
<li>
<a class="function" href="#import_dobs_string">import_dobs_string</a>
</li>
<li>
<a class="function" href="#read_dobs">read_dobs</a>
</li>
<li>
<a class="function" href="#create_dobs_string">create_dobs_string</a>
</li>
<li>
<a class="function" href="#write_dobs">write_dobs</a>
</li>
</ul>
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<a href="./../../pyerrors.html">pyerrors</a><wbr>.<a href="./../input.html">input</a><wbr>.dobs </h1>
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<div class="pdoc-code codehilite"><pre><span></span><span id="L-1"><a href="#L-1"><span class="linenos"> 1</span></a><span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">defaultdict</span>
</span><span id="L-2"><a href="#L-2"><span class="linenos"> 2</span></a><span class="kn">import</span> <span class="nn">gzip</span>
</span><span id="L-3"><a href="#L-3"><span class="linenos"> 3</span></a><span class="kn">import</span> <span class="nn">lxml.etree</span> <span class="k">as</span> <span class="nn">et</span>
</span><span id="L-4"><a href="#L-4"><span class="linenos"> 4</span></a><span class="kn">import</span> <span class="nn">getpass</span>
</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a><span class="kn">import</span> <span class="nn">socket</span>
</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="kn">import</span> <span class="nn">datetime</span>
</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a><span class="kn">import</span> <span class="nn">json</span>
</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a><span class="kn">import</span> <span class="nn">warnings</span>
</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">_merge_idx</span>
</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="kn">from</span> <span class="nn">..covobs</span> <span class="kn">import</span> <span class="n">Covobs</span>
</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">version</span> <span class="k">as</span> <span class="n">pyerrorsversion</span>
</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a>
</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a>
</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="c1"># Based on https://stackoverflow.com/a/10076823</span>
</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="k">def</span> <span class="nf">_etree_to_dict</span><span class="p">(</span><span class="n">t</span><span class="p">):</span>
</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot; Convert the content of an XML file to a python dict&quot;&quot;&quot;</span>
</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a> <span class="n">d</span> <span class="o">=</span> <span class="p">{</span><span class="n">t</span><span class="o">.</span><span class="n">tag</span><span class="p">:</span> <span class="p">{}</span> <span class="k">if</span> <span class="n">t</span><span class="o">.</span><span class="n">attrib</span> <span class="k">else</span> <span class="kc">None</span><span class="p">}</span>
</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a> <span class="n">children</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t</span><span class="p">)</span>
</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a> <span class="k">if</span> <span class="n">children</span><span class="p">:</span>
</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a> <span class="n">dd</span> <span class="o">=</span> <span class="n">defaultdict</span><span class="p">(</span><span class="nb">list</span><span class="p">)</span>
</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a> <span class="k">for</span> <span class="n">dc</span> <span class="ow">in</span> <span class="nb">map</span><span class="p">(</span><span class="n">_etree_to_dict</span><span class="p">,</span> <span class="n">children</span><span class="p">):</span>
</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">dc</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a> <span class="n">dd</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a> <span class="n">d</span> <span class="o">=</span> <span class="p">{</span><span class="n">t</span><span class="o">.</span><span class="n">tag</span><span class="p">:</span> <span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">v</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="k">else</span> <span class="n">v</span>
</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">dd</span><span class="o">.</span><span class="n">items</span><span class="p">()}}</span>
</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a> <span class="k">if</span> <span class="n">t</span><span class="o">.</span><span class="n">attrib</span><span class="p">:</span>
</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a> <span class="n">d</span><span class="p">[</span><span class="n">t</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">((</span><span class="s1">&#39;@&#39;</span> <span class="o">+</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span><span class="p">)</span>
</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">t</span><span class="o">.</span><span class="n">attrib</span><span class="o">.</span><span class="n">items</span><span class="p">())</span>
</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a> <span class="k">if</span> <span class="n">t</span><span class="o">.</span><span class="n">text</span><span class="p">:</span>
</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a> <span class="n">text</span> <span class="o">=</span> <span class="n">t</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a> <span class="k">if</span> <span class="n">children</span> <span class="ow">or</span> <span class="n">t</span><span class="o">.</span><span class="n">attrib</span><span class="p">:</span>
</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a> <span class="k">if</span> <span class="n">text</span><span class="p">:</span>
</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a> <span class="n">d</span><span class="p">[</span><span class="n">t</span><span class="o">.</span><span class="n">tag</span><span class="p">][</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">text</span><span class="p">]</span>
</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a> <span class="n">d</span><span class="p">[</span><span class="n">t</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span> <span class="o">=</span> <span class="n">text</span>
</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a> <span class="k">return</span> <span class="n">d</span>
</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>
</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>
</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a><span class="k">def</span> <span class="nf">_dict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a> <span class="n">iters</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a> <span class="k">if</span> <span class="n">k</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;#&#39;</span><span class="p">):</span>
</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a> <span class="k">for</span> <span class="n">la</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]:</span>
</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="n">la</span>
</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a> <span class="n">iters</span> <span class="o">=</span> <span class="s1">&#39;&lt;array&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">iters</span> <span class="o">+</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">array&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>
</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a> <span class="k">return</span> <span class="n">iters</span>
</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="nb">dict</span><span class="p">):</span>
</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="n">_dict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;&lt;</span><span class="si">%s%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])</span> <span class="o">&gt;</span> <span class="mi">100</span><span class="p">:</span>
</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; </span><span class="se">\n</span><span class="s1">&lt;</span><span class="si">%s%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt; &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; &lt;</span><span class="si">%s%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="nb">list</span><span class="p">):</span>
</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])):</span>
</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="n">_dict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a> <span class="k">elif</span> <span class="ow">not</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]:</span>
</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a> <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Type&#39;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]),</span> <span class="s1">&#39;not supported in export!&#39;</span><span class="p">)</span>
</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Type&#39;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">d</span><span class="p">),</span> <span class="s1">&#39;not supported in export!&#39;</span><span class="p">)</span>
</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a> <span class="k">return</span> <span class="n">iters</span>
</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>
</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>
</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a><span class="k">def</span> <span class="nf">_dict_to_xmlstring_spaces</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">space</span><span class="o">=</span><span class="s1">&#39; &#39;</span><span class="p">):</span>
</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a> <span class="n">s</span> <span class="o">=</span> <span class="n">_dict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a> <span class="n">o</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a> <span class="n">c</span> <span class="o">=</span> <span class="mi">0</span>
</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">False</span>
</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a> <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">s</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">):</span>
</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a> <span class="k">if</span> <span class="n">li</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)):</span>
</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a> <span class="n">c</span> <span class="o">-=</span> <span class="mi">1</span>
</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">True</span>
</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">c</span><span class="p">):</span>
</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">space</span>
</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">li</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a> <span class="k">if</span> <span class="n">li</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;&lt;&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">cm</span><span class="p">:</span>
</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a> <span class="n">c</span> <span class="o">+=</span> <span class="mi">1</span>
</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">False</span>
</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a> <span class="k">return</span> <span class="n">o</span>
</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>
</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>
</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a><span class="k">def</span> <span class="nf">create_pobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">enstag</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to an xml string</span>
</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a><span class="sd"> according to the Zeuthen pobs format.</span>
</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>
</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a><span class="sd"> Tags are not written or recovered automatically. The separator | is removed from the replica names.</span>
</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>
</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a><span class="sd"> Parameters</span>
</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a><span class="sd"> ----------</span>
</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a><span class="sd"> obsl : list</span>
</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a><span class="sd"> The Obs inside a structure have to be defined on the same ensemble.</span>
</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a><span class="sd"> name : str</span>
</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a><span class="sd"> The name of the observable.</span>
</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a><span class="sd"> spec : str</span>
</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a><span class="sd"> origin : str</span>
</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a><span class="sd"> symbol : list</span>
</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a><span class="sd"> enstag : str</span>
</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a><span class="sd"> Enstag that is written to pobs. If None, the ensemble name is used.</span>
</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>
</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a><span class="sd"> Returns</span>
</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a><span class="sd"> -------</span>
</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a><span class="sd"> xml_str : str</span>
</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a><span class="sd"> XML formatted string of the input data</span>
</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>
</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a> <span class="n">od</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a> <span class="n">ename</span> <span class="o">=</span> <span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a> <span class="n">names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a> <span class="n">nr</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a> <span class="n">onames</span> <span class="o">=</span> <span class="p">[</span><span class="n">name</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">]</span>
</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You try to export dobs to obs!&#39;</span><span class="p">)</span>
</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a> <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">e_names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">ename</span><span class="p">:</span>
</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You try to export dobs to obs!&#39;</span><span class="p">)</span>
</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span> <span class="o">!=</span> <span class="n">nr</span><span class="p">:</span>
</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible obses in list&#39;</span><span class="p">)</span>
</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;schema&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="s1">&#39;lattobs&#39;</span><span class="p">,</span> <span class="s1">&#39;version&#39;</span><span class="p">:</span> <span class="s1">&#39;1.0&#39;</span><span class="p">}</span>
</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a> <span class="s1">&#39;who&#39;</span><span class="p">:</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">(),</span>
</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a> <span class="s1">&#39;date&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">())[:</span><span class="o">-</span><span class="mi">7</span><span class="p">],</span>
</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a> <span class="s1">&#39;host&#39;</span><span class="p">:</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">(),</span>
</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a> <span class="s1">&#39;tool&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="s1">&#39;pyerrors&#39;</span><span class="p">,</span> <span class="s1">&#39;version&#39;</span><span class="p">:</span> <span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">}}</span>
</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;pobs&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a> <span class="n">pd</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;pobs&#39;</span><span class="p">]</span>
</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;spec&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">spec</span>
</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">origin</span>
</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a> <span class="k">if</span> <span class="n">enstag</span><span class="p">:</span>
</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">enstag</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;enstag has to be a string!&#39;</span><span class="p">)</span>
</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;enstag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">enstag</span>
</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;enstag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ename</span>
</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;nr&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">nr</span><span class="p">)</span>
</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a> <span class="n">osymbol</span> <span class="o">=</span> <span class="s1">&#39;cfg&#39;</span>
</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">symbol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list!&#39;</span><span class="p">)</span>
</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)):</span>
</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list of lenght 0 or </span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)))</span>
</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">symbol</span><span class="p">:</span>
</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a> <span class="n">osymbol</span> <span class="o">+=</span> <span class="s1">&#39; </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">s</span>
</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nr</span><span class="p">):</span>
</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a> <span class="n">ad</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">onames</span><span class="p">[</span><span class="n">r</span><span class="p">]</span>
</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a> <span class="n">Nconf</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]])</span>
</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a> <span class="n">layout</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> i f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">Nconf</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">layout</span>
</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">osymbol</span>
</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a> <span class="n">data</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">Nconf</span><span class="p">):</span>
</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]][</span><span class="n">c</span><span class="p">]</span>
</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a> <span class="n">num</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]][</span><span class="n">c</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]]</span>
</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ad</span><span class="p">)</span>
</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>
</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a> <span class="n">rs</span> <span class="o">=</span> <span class="s1">&#39;&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">_dict_to_xmlstring_spaces</span><span class="p">(</span><span class="n">od</span><span class="p">)</span>
</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a> <span class="k">return</span> <span class="n">rs</span>
</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>
</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>
</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a><span class="k">def</span> <span class="nf">write_pobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">enstag</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .xml.gz file</span>
</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a><span class="sd"> according to the Zeuthen pobs format.</span>
</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>
</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a><span class="sd"> Tags are not written or recovered automatically. The separator | is removed from the replica names.</span>
</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a>
</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a><span class="sd"> Parameters</span>
</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a><span class="sd"> ----------</span>
</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a><span class="sd"> obsl : list</span>
</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a><span class="sd"> The Obs inside a structure have to be defined on the same ensemble.</span>
</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a><span class="sd"> fname : str</span>
</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a><span class="sd"> Filename of the output file.</span>
</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a><span class="sd"> name : str</span>
</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a><span class="sd"> The name of the observable.</span>
</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a><span class="sd"> spec : str</span>
</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a><span class="sd"> origin : str</span>
</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a><span class="sd"> symbol : list</span>
</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a><span class="sd"> enstag : str</span>
</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a><span class="sd"> Enstag that is written to pobs. If None, the ensemble name is used.</span>
</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a><span class="sd"> gz : bool</span>
</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a><span class="sd"> If True, the output is a gzipped xml. If False, the output is an xml file.</span>
</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>
</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a><span class="sd"> Returns</span>
</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a><span class="sd"> -------</span>
</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a><span class="sd"> None</span>
</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a> <span class="n">pobsstring</span> <span class="o">=</span> <span class="n">create_pobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">enstag</span><span class="p">)</span>
</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>
</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>
</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>
</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">pobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">pobsstring</span><span class="p">)</span>
</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>
</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>
</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a><span class="k">def</span> <span class="nf">_import_data</span><span class="p">(</span><span class="n">string</span><span class="p">):</span>
</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a> <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="s2">&quot;[&quot;</span> <span class="o">+</span> <span class="s2">&quot;,&quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">string</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39; +&#39;</span><span class="p">,</span> <span class="s1">&#39; &#39;</span><span class="p">)</span><span class="o">.</span><span class="n">split</span><span class="p">())</span> <span class="o">+</span> <span class="s2">&quot;]&quot;</span><span class="p">)</span>
</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>
</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>
</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a><span class="k">def</span> <span class="nf">_check</span><span class="p">(</span><span class="n">condition</span><span class="p">):</span>
</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">condition</span><span class="p">:</span>
</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;XML file format not supported&quot;</span><span class="p">)</span>
</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>
</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a>
</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a><span class="k">class</span> <span class="nc">_NoTagInDataError</span><span class="p">(</span><span class="ne">Exception</span><span class="p">):</span>
</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Raised when tag is not in data&quot;&quot;&quot;</span>
</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a> <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">tag</span><span class="p">):</span>
</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">tag</span>
</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a> <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="s1">&#39;Tag </span><span class="si">%s</span><span class="s1"> not in data!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">))</span>
</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a>
</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a>
</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a><span class="k">def</span> <span class="nf">_find_tag</span><span class="p">(</span><span class="n">dat</span><span class="p">,</span> <span class="n">tag</span><span class="p">):</span>
</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">dat</span><span class="p">)):</span>
</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a> <span class="k">if</span> <span class="n">dat</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="n">tag</span><span class="p">:</span>
</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a> <span class="k">return</span> <span class="n">i</span>
</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a> <span class="k">raise</span> <span class="n">_NoTagInDataError</span><span class="p">(</span><span class="n">tag</span><span class="p">)</span>
</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a>
</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a>
</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a><span class="k">def</span> <span class="nf">_import_array</span><span class="p">(</span><span class="n">arr</span><span class="p">):</span>
</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a> <span class="n">name</span> <span class="o">=</span> <span class="n">arr</span><span class="p">[</span><span class="n">_find_tag</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="s1">&#39;id&#39;</span><span class="p">)]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a> <span class="n">index</span> <span class="o">=</span> <span class="n">_find_tag</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="s1">&#39;layout&#39;</span><span class="p">)</span>
</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a> <span class="k">try</span><span class="p">:</span>
</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a> <span class="n">sindex</span> <span class="o">=</span> <span class="n">_find_tag</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="s1">&#39;symbol&#39;</span><span class="p">)</span>
</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a> <span class="k">except</span> <span class="n">_NoTagInDataError</span><span class="p">:</span>
</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a> <span class="n">sindex</span> <span class="o">=</span> <span class="mi">0</span>
</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a> <span class="k">if</span> <span class="n">sindex</span> <span class="o">&gt;</span> <span class="n">index</span><span class="p">:</span>
</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">_import_data</span><span class="p">(</span><span class="n">arr</span><span class="p">[</span><span class="n">sindex</span><span class="p">]</span><span class="o">.</span><span class="n">tail</span><span class="p">)</span>
</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">_import_data</span><span class="p">(</span><span class="n">arr</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">tail</span><span class="p">)</span>
</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a>
</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a> <span class="n">li</span> <span class="o">=</span> <span class="n">arr</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a> <span class="n">m</span> <span class="o">=</span> <span class="n">li</span><span class="o">.</span><span class="n">split</span><span class="p">()</span>
</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a> <span class="k">if</span> <span class="n">m</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;i&quot;</span> <span class="ow">and</span> <span class="n">m</span><span class="p">[</span><span class="mi">2</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;f&quot;</span><span class="p">:</span>
</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a> <span class="n">nc</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">m</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a> <span class="n">na</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">m</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;f&#39;</span><span class="p">))</span>
</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a> <span class="n">_dat</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a> <span class="n">mask</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">na</span><span class="p">):</span>
</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a> <span class="n">mask</span> <span class="o">+=</span> <span class="p">[</span><span class="n">a</span><span class="p">]</span>
</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a> <span class="n">_dat</span> <span class="o">+=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">1</span> <span class="o">+</span> <span class="n">a</span><span class="p">::</span> <span class="n">na</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])]</span>
</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a> <span class="n">_check</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">::</span> <span class="n">na</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">==</span> <span class="n">nc</span><span class="p">)</span>
</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a> <span class="k">return</span> <span class="p">[</span><span class="n">name</span><span class="p">,</span> <span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">::</span> <span class="n">na</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="n">mask</span><span class="p">,</span> <span class="n">_dat</span><span class="p">]</span>
</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a> <span class="k">elif</span> <span class="n">m</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;f&#39;</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">m</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a> <span class="n">sh</span> <span class="o">=</span> <span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">m</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="nb">int</span><span class="p">(</span><span class="n">m</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;f&#39;</span><span class="p">)))</span>
</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a> <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">sh</span><span class="p">)</span>
</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a> <span class="k">elif</span> <span class="nb">any</span><span class="p">([</span><span class="s1">&#39;f&#39;</span> <span class="ow">in</span> <span class="n">s</span> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">m</span><span class="p">]):</span>
</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a> <span class="k">for</span> <span class="n">si</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">m</span><span class="p">)):</span>
</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a> <span class="k">if</span> <span class="n">m</span><span class="p">[</span><span class="n">si</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;f&#39;</span><span class="p">:</span>
</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a> <span class="k">break</span>
</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a> <span class="n">sh</span> <span class="o">=</span> <span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">m</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">si</span><span class="p">)]</span>
</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a> <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">sh</span><span class="p">)</span>
</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a> <span class="nb">print</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">m</span><span class="p">)</span>
</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a> <span class="n">_check</span><span class="p">(</span><span class="kc">False</span><span class="p">)</span>
</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a>
</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a>
</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a><span class="k">def</span> <span class="nf">_import_rdata</span><span class="p">(</span><span class="n">rd</span><span class="p">):</span>
</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">mask</span><span class="p">,</span> <span class="n">deltas</span> <span class="o">=</span> <span class="n">_import_array</span><span class="p">(</span><span class="n">rd</span><span class="p">)</span>
</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a> <span class="k">return</span> <span class="n">deltas</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span>
</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a>
</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>
</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a><span class="k">def</span> <span class="nf">_import_cdata</span><span class="p">(</span><span class="n">cd</span><span class="p">):</span>
</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">cd</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;id&quot;</span><span class="p">)</span>
</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">cd</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;cov&quot;</span><span class="p">)</span>
</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a> <span class="n">cov</span> <span class="o">=</span> <span class="n">_import_array</span><span class="p">(</span><span class="n">cd</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a> <span class="n">grad</span> <span class="o">=</span> <span class="n">_import_array</span><span class="p">(</span><span class="n">cd</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a> <span class="k">return</span> <span class="n">cd</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">(),</span> <span class="n">cov</span><span class="p">,</span> <span class="n">grad</span>
</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a>
</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a>
</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a><span class="k">def</span> <span class="nf">read_pobs</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Import a list of Obs from an xml.gz file in the Zeuthen pobs format.</span>
</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a>
</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a><span class="sd"> Tags are not written or recovered automatically.</span>
</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a>
</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a><span class="sd"> Parameters</span>
</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a><span class="sd"> ----------</span>
</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a><span class="sd"> fname : str</span>
</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a><span class="sd"> Filename of the input file.</span>
</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a><span class="sd"> full_output : bool</span>
</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a><span class="sd"> If False, only the data is returned as list.</span>
</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a><span class="sd"> separatior_insertion: str or int</span>
</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a><span class="sd"> str: replace all occurences of &quot;separator_insertion&quot; within the replica names</span>
</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a><span class="sd"> by &quot;|%s&quot; % (separator_insertion) when constructing the names of the replica.</span>
</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a><span class="sd"> int: Insert the separator &quot;|&quot; at the position given by separator_insertion.</span>
</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a><span class="sd"> None (default): Replica names remain unchanged.</span>
</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a>
</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a><span class="sd"> Returns</span>
</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a><span class="sd"> -------</span>
</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a><span class="sd"> res : list[Obs]</span>
</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a><span class="sd"> Imported data</span>
</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a><span class="sd"> or</span>
</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a><span class="sd"> res : dict</span>
</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a><span class="sd"> Imported data and meta-data</span>
</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a>
</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>
</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a> <span class="c1"># parse xml file content</span>
</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a> <span class="n">root</span> <span class="o">=</span> <span class="n">et</span><span class="o">.</span><span class="n">fromstring</span><span class="p">(</span><span class="n">content</span><span class="p">)</span>
</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a>
</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;pobs&#39;</span><span class="p">)</span>
</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a> <span class="n">pobs</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a>
</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a> <span class="n">version</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a>
</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;origin&#39;</span><span class="p">)</span>
</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a> <span class="n">file_origin</span> <span class="o">=</span> <span class="n">_etree_to_dict</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">])[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span>
</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a>
</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a> <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a> <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a> <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">pobs</span><span class="p">)):</span>
</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a> <span class="n">delta</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_import_rdata</span><span class="p">(</span><span class="n">pobs</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a> <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">delta</span><span class="p">)</span>
</span><span id="L-357"><a href="#L-357"><span class="linenos">357</span></a> <span class="k">if</span> <span class="n">separator_insertion</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="L-358"><a href="#L-358"><span class="linenos">358</span></a> <span class="k">pass</span>
</span><span id="L-359"><a href="#L-359"><span class="linenos">359</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
</span><span id="L-360"><a href="#L-360"><span class="linenos">360</span></a> <span class="n">name</span> <span class="o">=</span> <span class="n">name</span><span class="p">[:</span><span class="n">separator_insertion</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">[</span><span class="n">separator_insertion</span><span class="p">:]</span>
</span><span id="L-361"><a href="#L-361"><span class="linenos">361</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="L-362"><a href="#L-362"><span class="linenos">362</span></a> <span class="n">name</span> <span class="o">=</span> <span class="n">name</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="s2">&quot;|</span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="L-363"><a href="#L-363"><span class="linenos">363</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-364"><a href="#L-364"><span class="linenos">364</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;separator_insertion has to be string or int, is &quot;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="L-365"><a href="#L-365"><span class="linenos">365</span></a> <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
</span><span id="L-366"><a href="#L-366"><span class="linenos">366</span></a> <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
</span><span id="L-367"><a href="#L-367"><span class="linenos">367</span></a> <span class="n">res</span> <span class="o">=</span> <span class="p">[</span><span class="n">Obs</span><span class="p">([</span><span class="n">d</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">deltas</span><span class="p">],</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="mi">0</span><span class="p">]))]</span>
</span><span id="L-368"><a href="#L-368"><span class="linenos">368</span></a>
</span><span id="L-369"><a href="#L-369"><span class="linenos">369</span></a> <span class="n">descriptiond</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-370"><a href="#L-370"><span class="linenos">370</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
</span><span id="L-371"><a href="#L-371"><span class="linenos">371</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="n">pobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span> <span class="o">=</span> <span class="n">pobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-372"><a href="#L-372"><span class="linenos">372</span></a>
</span><span id="L-373"><a href="#L-373"><span class="linenos">373</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">pobs</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;nr&quot;</span><span class="p">)</span>
</span><span id="L-374"><a href="#L-374"><span class="linenos">374</span></a>
</span><span id="L-375"><a href="#L-375"><span class="linenos">375</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">pobs</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;array&#39;</span><span class="p">)</span>
</span><span id="L-376"><a href="#L-376"><span class="linenos">376</span></a> <span class="k">if</span> <span class="n">pobs</span><span class="p">[</span><span class="mi">5</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;symbol&#39;</span><span class="p">:</span>
</span><span id="L-377"><a href="#L-377"><span class="linenos">377</span></a> <span class="n">symbol</span> <span class="o">=</span> <span class="n">pobs</span><span class="p">[</span><span class="mi">5</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-378"><a href="#L-378"><span class="linenos">378</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">symbol</span>
</span><span id="L-379"><a href="#L-379"><span class="linenos">379</span></a>
</span><span id="L-380"><a href="#L-380"><span class="linenos">380</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
</span><span id="L-381"><a href="#L-381"><span class="linenos">381</span></a> <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-382"><a href="#L-382"><span class="linenos">382</span></a> <span class="n">tool</span> <span class="o">=</span> <span class="n">file_origin</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tool&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
</span><span id="L-383"><a href="#L-383"><span class="linenos">383</span></a> <span class="k">if</span> <span class="n">tool</span><span class="p">:</span>
</span><span id="L-384"><a href="#L-384"><span class="linenos">384</span></a> <span class="n">program</span> <span class="o">=</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">+</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span>
</span><span id="L-385"><a href="#L-385"><span class="linenos">385</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-386"><a href="#L-386"><span class="linenos">386</span></a> <span class="n">program</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-387"><a href="#L-387"><span class="linenos">387</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">program</span>
</span><span id="L-388"><a href="#L-388"><span class="linenos">388</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">version</span>
</span><span id="L-389"><a href="#L-389"><span class="linenos">389</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span>
</span><span id="L-390"><a href="#L-390"><span class="linenos">390</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span>
</span><span id="L-391"><a href="#L-391"><span class="linenos">391</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span>
</span><span id="L-392"><a href="#L-392"><span class="linenos">392</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">descriptiond</span>
</span><span id="L-393"><a href="#L-393"><span class="linenos">393</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span>
</span><span id="L-394"><a href="#L-394"><span class="linenos">394</span></a> <span class="k">return</span> <span class="n">retd</span>
</span><span id="L-395"><a href="#L-395"><span class="linenos">395</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-396"><a href="#L-396"><span class="linenos">396</span></a> <span class="k">return</span> <span class="n">res</span>
</span><span id="L-397"><a href="#L-397"><span class="linenos">397</span></a>
</span><span id="L-398"><a href="#L-398"><span class="linenos">398</span></a>
</span><span id="L-399"><a href="#L-399"><span class="linenos">399</span></a><span class="c1"># this is based on Mattia Bruno&#39;s implementation at https://github.com/mbruno46/pyobs/blob/master/pyobs/IO/xml.py</span>
</span><span id="L-400"><a href="#L-400"><span class="linenos">400</span></a><span class="k">def</span> <span class="nf">import_dobs_string</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="L-401"><a href="#L-401"><span class="linenos">401</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Import a list of Obs from a string in the Zeuthen dobs format.</span>
</span><span id="L-402"><a href="#L-402"><span class="linenos">402</span></a>
</span><span id="L-403"><a href="#L-403"><span class="linenos">403</span></a><span class="sd"> Tags are not written or recovered automatically.</span>
</span><span id="L-404"><a href="#L-404"><span class="linenos">404</span></a>
</span><span id="L-405"><a href="#L-405"><span class="linenos">405</span></a><span class="sd"> Parameters</span>
</span><span id="L-406"><a href="#L-406"><span class="linenos">406</span></a><span class="sd"> ----------</span>
</span><span id="L-407"><a href="#L-407"><span class="linenos">407</span></a><span class="sd"> content : str</span>
</span><span id="L-408"><a href="#L-408"><span class="linenos">408</span></a><span class="sd"> XML string containing the data</span>
</span><span id="L-409"><a href="#L-409"><span class="linenos">409</span></a><span class="sd"> full_output : bool</span>
</span><span id="L-410"><a href="#L-410"><span class="linenos">410</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
</span><span id="L-411"><a href="#L-411"><span class="linenos">411</span></a><span class="sd"> If False, only the data is returned as list.</span>
</span><span id="L-412"><a href="#L-412"><span class="linenos">412</span></a><span class="sd"> separatior_insertion: str, int or bool</span>
</span><span id="L-413"><a href="#L-413"><span class="linenos">413</span></a><span class="sd"> str: replace all occurences of &quot;separator_insertion&quot; within the replica names</span>
</span><span id="L-414"><a href="#L-414"><span class="linenos">414</span></a><span class="sd"> by &quot;|%s&quot; % (separator_insertion) when constructing the names of the replica.</span>
</span><span id="L-415"><a href="#L-415"><span class="linenos">415</span></a><span class="sd"> int: Insert the separator &quot;|&quot; at the position given by separator_insertion.</span>
</span><span id="L-416"><a href="#L-416"><span class="linenos">416</span></a><span class="sd"> True (default): separator &quot;|&quot; is inserted after len(ensname), assuming that the</span>
</span><span id="L-417"><a href="#L-417"><span class="linenos">417</span></a><span class="sd"> ensemble name is a prefix to the replica name.</span>
</span><span id="L-418"><a href="#L-418"><span class="linenos">418</span></a><span class="sd"> None or False: No separator is inserted.</span>
</span><span id="L-419"><a href="#L-419"><span class="linenos">419</span></a>
</span><span id="L-420"><a href="#L-420"><span class="linenos">420</span></a><span class="sd"> Returns</span>
</span><span id="L-421"><a href="#L-421"><span class="linenos">421</span></a><span class="sd"> -------</span>
</span><span id="L-422"><a href="#L-422"><span class="linenos">422</span></a><span class="sd"> res : list[Obs]</span>
</span><span id="L-423"><a href="#L-423"><span class="linenos">423</span></a><span class="sd"> Imported data</span>
</span><span id="L-424"><a href="#L-424"><span class="linenos">424</span></a><span class="sd"> or</span>
</span><span id="L-425"><a href="#L-425"><span class="linenos">425</span></a><span class="sd"> res : dict</span>
</span><span id="L-426"><a href="#L-426"><span class="linenos">426</span></a><span class="sd"> Imported data and meta-data</span>
</span><span id="L-427"><a href="#L-427"><span class="linenos">427</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="L-428"><a href="#L-428"><span class="linenos">428</span></a>
</span><span id="L-429"><a href="#L-429"><span class="linenos">429</span></a> <span class="n">root</span> <span class="o">=</span> <span class="n">et</span><span class="o">.</span><span class="n">fromstring</span><span class="p">(</span><span class="n">content</span><span class="p">)</span>
</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a>
</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">)</span>
</span><span id="L-432"><a href="#L-432"><span class="linenos">432</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;SCHEMA&#39;</span><span class="p">)</span>
</span><span id="L-433"><a href="#L-433"><span class="linenos">433</span></a> <span class="n">version</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-434"><a href="#L-434"><span class="linenos">434</span></a>
</span><span id="L-435"><a href="#L-435"><span class="linenos">435</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;origin&#39;</span><span class="p">)</span>
</span><span id="L-436"><a href="#L-436"><span class="linenos">436</span></a> <span class="n">file_origin</span> <span class="o">=</span> <span class="n">_etree_to_dict</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">])[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span>
</span><span id="L-437"><a href="#L-437"><span class="linenos">437</span></a>
</span><span id="L-438"><a href="#L-438"><span class="linenos">438</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;dobs&#39;</span><span class="p">)</span>
</span><span id="L-439"><a href="#L-439"><span class="linenos">439</span></a>
</span><span id="L-440"><a href="#L-440"><span class="linenos">440</span></a> <span class="n">dobs</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
</span><span id="L-441"><a href="#L-441"><span class="linenos">441</span></a>
</span><span id="L-442"><a href="#L-442"><span class="linenos">442</span></a> <span class="n">descriptiond</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-443"><a href="#L-443"><span class="linenos">443</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">):</span>
</span><span id="L-444"><a href="#L-444"><span class="linenos">444</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="n">dobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span> <span class="o">=</span> <span class="n">dobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-445"><a href="#L-445"><span class="linenos">445</span></a>
</span><span id="L-446"><a href="#L-446"><span class="linenos">446</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;array&#39;</span><span class="p">)</span>
</span><span id="L-447"><a href="#L-447"><span class="linenos">447</span></a>
</span><span id="L-448"><a href="#L-448"><span class="linenos">448</span></a> <span class="n">symbol</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-449"><a href="#L-449"><span class="linenos">449</span></a> <span class="k">if</span> <span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;symbol&#39;</span><span class="p">:</span>
</span><span id="L-450"><a href="#L-450"><span class="linenos">450</span></a> <span class="n">symbol</span> <span class="o">=</span> <span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-451"><a href="#L-451"><span class="linenos">451</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">symbol</span>
</span><span id="L-452"><a href="#L-452"><span class="linenos">452</span></a> <span class="n">mean</span> <span class="o">=</span> <span class="n">_import_array</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">])[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="L-453"><a href="#L-453"><span class="linenos">453</span></a>
</span><span id="L-454"><a href="#L-454"><span class="linenos">454</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;ne&quot;</span><span class="p">)</span>
</span><span id="L-455"><a href="#L-455"><span class="linenos">455</span></a> <span class="n">ne</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
</span><span id="L-456"><a href="#L-456"><span class="linenos">456</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;nc&quot;</span><span class="p">)</span>
</span><span id="L-457"><a href="#L-457"><span class="linenos">457</span></a>
</span><span id="L-458"><a href="#L-458"><span class="linenos">458</span></a> <span class="n">idld</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-459"><a href="#L-459"><span class="linenos">459</span></a> <span class="n">deltad</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-460"><a href="#L-460"><span class="linenos">460</span></a> <span class="n">covd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-461"><a href="#L-461"><span class="linenos">461</span></a> <span class="n">gradd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-462"><a href="#L-462"><span class="linenos">462</span></a> <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-463"><a href="#L-463"><span class="linenos">463</span></a> <span class="n">e_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-464"><a href="#L-464"><span class="linenos">464</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-465"><a href="#L-465"><span class="linenos">465</span></a> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">6</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">dobs</span><span class="p">))):</span>
</span><span id="L-466"><a href="#L-466"><span class="linenos">466</span></a> <span class="k">if</span> <span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;edata&quot;</span><span class="p">:</span>
</span><span id="L-467"><a href="#L-467"><span class="linenos">467</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;enstag&quot;</span><span class="p">)</span>
</span><span id="L-468"><a href="#L-468"><span class="linenos">468</span></a> <span class="n">ename</span> <span class="o">=</span> <span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="L-469"><a href="#L-469"><span class="linenos">469</span></a> <span class="n">e_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ename</span><span class="p">)</span>
</span><span id="L-470"><a href="#L-470"><span class="linenos">470</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;nr&quot;</span><span class="p">)</span>
</span><span id="L-471"><a href="#L-471"><span class="linenos">471</span></a> <span class="n">R</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
</span><span id="L-472"><a href="#L-472"><span class="linenos">472</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">R</span><span class="p">):</span>
</span><span id="L-473"><a href="#L-473"><span class="linenos">473</span></a> <span class="n">deltas</span><span class="p">,</span> <span class="n">rname</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_import_rdata</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="L-474"><a href="#L-474"><span class="linenos">474</span></a> <span class="k">if</span> <span class="n">separator_insertion</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="kc">False</span><span class="p">:</span>
</span><span id="L-475"><a href="#L-475"><span class="linenos">475</span></a> <span class="k">pass</span>
</span><span id="L-476"><a href="#L-476"><span class="linenos">476</span></a> <span class="k">elif</span> <span class="n">separator_insertion</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
</span><span id="L-477"><a href="#L-477"><span class="linenos">477</span></a> <span class="k">if</span> <span class="n">rname</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">ename</span><span class="p">):</span>
</span><span id="L-478"><a href="#L-478"><span class="linenos">478</span></a> <span class="n">rname</span> <span class="o">=</span> <span class="n">rname</span><span class="p">[:</span><span class="nb">len</span><span class="p">(</span><span class="n">ename</span><span class="p">)]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">rname</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">ename</span><span class="p">):]</span>
</span><span id="L-479"><a href="#L-479"><span class="linenos">479</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
</span><span id="L-480"><a href="#L-480"><span class="linenos">480</span></a> <span class="n">rname</span> <span class="o">=</span> <span class="n">rname</span><span class="p">[:</span><span class="n">separator_insertion</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">rname</span><span class="p">[</span><span class="n">separator_insertion</span><span class="p">:]</span>
</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a> <span class="n">rname</span> <span class="o">=</span> <span class="n">rname</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="s2">&quot;|</span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;separator_insertion has to be string or int, is &quot;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a> <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">rname</span><span class="p">:</span>
</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a> <span class="n">new_ename</span> <span class="o">=</span> <span class="n">rname</span><span class="p">[:</span><span class="n">rname</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)]</span>
</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a> <span class="n">new_ename</span> <span class="o">=</span> <span class="n">ename</span>
</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a> <span class="n">enstags</span><span class="p">[</span><span class="n">new_ename</span><span class="p">]</span> <span class="o">=</span> <span class="n">ename</span>
</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a> <span class="n">idld</span><span class="p">[</span><span class="n">rname</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a> <span class="n">deltad</span><span class="p">[</span><span class="n">rname</span><span class="p">]</span> <span class="o">=</span> <span class="n">deltas</span>
</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a> <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rname</span><span class="p">)</span>
</span><span id="L-493"><a href="#L-493"><span class="linenos">493</span></a> <span class="k">elif</span> <span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;cdata&quot;</span><span class="p">:</span>
</span><span id="L-494"><a href="#L-494"><span class="linenos">494</span></a> <span class="n">cname</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">grad</span> <span class="o">=</span> <span class="n">_import_cdata</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">])</span>
</span><span id="L-495"><a href="#L-495"><span class="linenos">495</span></a> <span class="n">covd</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="n">cov</span>
</span><span id="L-496"><a href="#L-496"><span class="linenos">496</span></a> <span class="k">if</span> <span class="n">grad</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
</span><span id="L-497"><a href="#L-497"><span class="linenos">497</span></a> <span class="n">gradd</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">grad</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">mean</span><span class="p">))]</span>
</span><span id="L-498"><a href="#L-498"><span class="linenos">498</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-499"><a href="#L-499"><span class="linenos">499</span></a> <span class="n">gradd</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="n">grad</span><span class="o">.</span><span class="n">T</span>
</span><span id="L-500"><a href="#L-500"><span class="linenos">500</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-501"><a href="#L-501"><span class="linenos">501</span></a> <span class="n">_check</span><span class="p">(</span><span class="kc">False</span><span class="p">)</span>
</span><span id="L-502"><a href="#L-502"><span class="linenos">502</span></a> <span class="n">names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">))</span>
</span><span id="L-503"><a href="#L-503"><span class="linenos">503</span></a>
</span><span id="L-504"><a href="#L-504"><span class="linenos">504</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">:</span>
</span><span id="L-505"><a href="#L-505"><span class="linenos">505</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">])):</span>
</span><span id="L-506"><a href="#L-506"><span class="linenos">506</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="L-507"><a href="#L-507"><span class="linenos">507</span></a> <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])):</span>
</span><span id="L-508"><a href="#L-508"><span class="linenos">508</span></a> <span class="k">if</span> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">!=</span> <span class="mf">0.</span><span class="p">:</span>
</span><span id="L-509"><a href="#L-509"><span class="linenos">509</span></a> <span class="n">tmp</span><span class="p">[</span><span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">+</span> <span class="n">mean</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
</span><span id="L-510"><a href="#L-510"><span class="linenos">510</span></a> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
</span><span id="L-511"><a href="#L-511"><span class="linenos">511</span></a>
</span><span id="L-512"><a href="#L-512"><span class="linenos">512</span></a> <span class="n">res</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-513"><a href="#L-513"><span class="linenos">513</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">mean</span><span class="p">)):</span>
</span><span id="L-514"><a href="#L-514"><span class="linenos">514</span></a> <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-515"><a href="#L-515"><span class="linenos">515</span></a> <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-516"><a href="#L-516"><span class="linenos">516</span></a> <span class="n">obs_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-517"><a href="#L-517"><span class="linenos">517</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">:</span>
</span><span id="L-518"><a href="#L-518"><span class="linenos">518</span></a> <span class="n">h</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="L-519"><a href="#L-519"><span class="linenos">519</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">h</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">h</span> <span class="o">==</span> <span class="n">mean</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
</span><span id="L-520"><a href="#L-520"><span class="linenos">520</span></a> <span class="k">continue</span>
</span><span id="L-521"><a href="#L-521"><span class="linenos">521</span></a> <span class="n">repdeltas</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-522"><a href="#L-522"><span class="linenos">522</span></a> <span class="n">repidl</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-523"><a href="#L-523"><span class="linenos">523</span></a> <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])):</span>
</span><span id="L-524"><a href="#L-524"><span class="linenos">524</span></a> <span class="k">if</span> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">!=</span> <span class="mf">0.</span><span class="p">:</span>
</span><span id="L-525"><a href="#L-525"><span class="linenos">525</span></a> <span class="n">repdeltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">])</span>
</span><span id="L-526"><a href="#L-526"><span class="linenos">526</span></a> <span class="n">repidl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">idld</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">j</span><span class="p">])</span>
</span><span id="L-527"><a href="#L-527"><span class="linenos">527</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">repdeltas</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-528"><a href="#L-528"><span class="linenos">528</span></a> <span class="n">obs_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
</span><span id="L-529"><a href="#L-529"><span class="linenos">529</span></a> <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">repdeltas</span><span class="p">)</span>
</span><span id="L-530"><a href="#L-530"><span class="linenos">530</span></a> <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">repidl</span><span class="p">)</span>
</span><span id="L-531"><a href="#L-531"><span class="linenos">531</span></a>
</span><span id="L-532"><a href="#L-532"><span class="linenos">532</span></a> <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">obs_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
</span><span id="L-533"><a href="#L-533"><span class="linenos">533</span></a> <span class="n">res</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">mean</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
</span><span id="L-534"><a href="#L-534"><span class="linenos">534</span></a> <span class="n">_check</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="n">ne</span><span class="p">)</span>
</span><span id="L-535"><a href="#L-535"><span class="linenos">535</span></a>
</span><span id="L-536"><a href="#L-536"><span class="linenos">536</span></a> <span class="n">cnames</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">covd</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
</span><span id="L-537"><a href="#L-537"><span class="linenos">537</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">)):</span>
</span><span id="L-538"><a href="#L-538"><span class="linenos">538</span></a> <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">covd</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">gradd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cnames</span><span class="p">}</span>
</span><span id="L-539"><a href="#L-539"><span class="linenos">539</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cnames</span><span class="p">:</span>
</span><span id="L-540"><a href="#L-540"><span class="linenos">540</span></a> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">new_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
</span><span id="L-541"><a href="#L-541"><span class="linenos">541</span></a> <span class="k">del</span> <span class="n">new_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
</span><span id="L-542"><a href="#L-542"><span class="linenos">542</span></a> <span class="n">cnames_loc</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
</span><span id="L-543"><a href="#L-543"><span class="linenos">543</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cnames_loc</span><span class="p">:</span>
</span><span id="L-544"><a href="#L-544"><span class="linenos">544</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
</span><span id="L-545"><a href="#L-545"><span class="linenos">545</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
</span><span id="L-546"><a href="#L-546"><span class="linenos">546</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-547"><a href="#L-547"><span class="linenos">547</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
</span><span id="L-548"><a href="#L-548"><span class="linenos">548</span></a>
</span><span id="L-549"><a href="#L-549"><span class="linenos">549</span></a> <span class="k">if</span> <span class="n">symbol</span><span class="p">:</span>
</span><span id="L-550"><a href="#L-550"><span class="linenos">550</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">)):</span>
</span><span id="L-551"><a href="#L-551"><span class="linenos">551</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">symbol</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
</span><span id="L-552"><a href="#L-552"><span class="linenos">552</span></a> <span class="k">if</span> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;None&#39;</span><span class="p">:</span>
</span><span id="L-553"><a href="#L-553"><span class="linenos">553</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
</span><span id="L-554"><a href="#L-554"><span class="linenos">554</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
</span><span id="L-555"><a href="#L-555"><span class="linenos">555</span></a> <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-556"><a href="#L-556"><span class="linenos">556</span></a> <span class="n">tool</span> <span class="o">=</span> <span class="n">file_origin</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tool&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
</span><span id="L-557"><a href="#L-557"><span class="linenos">557</span></a> <span class="k">if</span> <span class="n">tool</span><span class="p">:</span>
</span><span id="L-558"><a href="#L-558"><span class="linenos">558</span></a> <span class="n">program</span> <span class="o">=</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">+</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span>
</span><span id="L-559"><a href="#L-559"><span class="linenos">559</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-560"><a href="#L-560"><span class="linenos">560</span></a> <span class="n">program</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-561"><a href="#L-561"><span class="linenos">561</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">program</span>
</span><span id="L-562"><a href="#L-562"><span class="linenos">562</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">version</span>
</span><span id="L-563"><a href="#L-563"><span class="linenos">563</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span>
</span><span id="L-564"><a href="#L-564"><span class="linenos">564</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span>
</span><span id="L-565"><a href="#L-565"><span class="linenos">565</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span>
</span><span id="L-566"><a href="#L-566"><span class="linenos">566</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">descriptiond</span>
</span><span id="L-567"><a href="#L-567"><span class="linenos">567</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;enstags&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">enstags</span>
</span><span id="L-568"><a href="#L-568"><span class="linenos">568</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span>
</span><span id="L-569"><a href="#L-569"><span class="linenos">569</span></a> <span class="k">return</span> <span class="n">retd</span>
</span><span id="L-570"><a href="#L-570"><span class="linenos">570</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-571"><a href="#L-571"><span class="linenos">571</span></a> <span class="k">return</span> <span class="n">res</span>
</span><span id="L-572"><a href="#L-572"><span class="linenos">572</span></a>
</span><span id="L-573"><a href="#L-573"><span class="linenos">573</span></a>
</span><span id="L-574"><a href="#L-574"><span class="linenos">574</span></a><span class="k">def</span> <span class="nf">read_dobs</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="L-575"><a href="#L-575"><span class="linenos">575</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Import a list of Obs from an xml.gz file in the Zeuthen dobs format.</span>
</span><span id="L-576"><a href="#L-576"><span class="linenos">576</span></a>
</span><span id="L-577"><a href="#L-577"><span class="linenos">577</span></a><span class="sd"> Tags are not written or recovered automatically.</span>
</span><span id="L-578"><a href="#L-578"><span class="linenos">578</span></a>
</span><span id="L-579"><a href="#L-579"><span class="linenos">579</span></a><span class="sd"> Parameters</span>
</span><span id="L-580"><a href="#L-580"><span class="linenos">580</span></a><span class="sd"> ----------</span>
</span><span id="L-581"><a href="#L-581"><span class="linenos">581</span></a><span class="sd"> fname : str</span>
</span><span id="L-582"><a href="#L-582"><span class="linenos">582</span></a><span class="sd"> Filename of the input file.</span>
</span><span id="L-583"><a href="#L-583"><span class="linenos">583</span></a><span class="sd"> full_output : bool</span>
</span><span id="L-584"><a href="#L-584"><span class="linenos">584</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
</span><span id="L-585"><a href="#L-585"><span class="linenos">585</span></a><span class="sd"> If False, only the data is returned as list.</span>
</span><span id="L-586"><a href="#L-586"><span class="linenos">586</span></a><span class="sd"> gz : bool</span>
</span><span id="L-587"><a href="#L-587"><span class="linenos">587</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes XML file.</span>
</span><span id="L-588"><a href="#L-588"><span class="linenos">588</span></a><span class="sd"> separatior_insertion: str, int or bool</span>
</span><span id="L-589"><a href="#L-589"><span class="linenos">589</span></a><span class="sd"> str: replace all occurences of &quot;separator_insertion&quot; within the replica names</span>
</span><span id="L-590"><a href="#L-590"><span class="linenos">590</span></a><span class="sd"> by &quot;|%s&quot; % (separator_insertion) when constructing the names of the replica.</span>
</span><span id="L-591"><a href="#L-591"><span class="linenos">591</span></a><span class="sd"> int: Insert the separator &quot;|&quot; at the position given by separator_insertion.</span>
</span><span id="L-592"><a href="#L-592"><span class="linenos">592</span></a><span class="sd"> True (default): separator &quot;|&quot; is inserted after len(ensname), assuming that the</span>
</span><span id="L-593"><a href="#L-593"><span class="linenos">593</span></a><span class="sd"> ensemble name is a prefix to the replica name.</span>
</span><span id="L-594"><a href="#L-594"><span class="linenos">594</span></a><span class="sd"> None or False: No separator is inserted.</span>
</span><span id="L-595"><a href="#L-595"><span class="linenos">595</span></a>
</span><span id="L-596"><a href="#L-596"><span class="linenos">596</span></a><span class="sd"> Returns</span>
</span><span id="L-597"><a href="#L-597"><span class="linenos">597</span></a><span class="sd"> -------</span>
</span><span id="L-598"><a href="#L-598"><span class="linenos">598</span></a><span class="sd"> res : list[Obs]</span>
</span><span id="L-599"><a href="#L-599"><span class="linenos">599</span></a><span class="sd"> Imported data</span>
</span><span id="L-600"><a href="#L-600"><span class="linenos">600</span></a><span class="sd"> or</span>
</span><span id="L-601"><a href="#L-601"><span class="linenos">601</span></a><span class="sd"> res : dict</span>
</span><span id="L-602"><a href="#L-602"><span class="linenos">602</span></a><span class="sd"> Imported data and meta-data</span>
</span><span id="L-603"><a href="#L-603"><span class="linenos">603</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="L-604"><a href="#L-604"><span class="linenos">604</span></a>
</span><span id="L-605"><a href="#L-605"><span class="linenos">605</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-606"><a href="#L-606"><span class="linenos">606</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="L-607"><a href="#L-607"><span class="linenos">607</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="L-608"><a href="#L-608"><span class="linenos">608</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-609"><a href="#L-609"><span class="linenos">609</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="L-610"><a href="#L-610"><span class="linenos">610</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="L-611"><a href="#L-611"><span class="linenos">611</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="L-612"><a href="#L-612"><span class="linenos">612</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-613"><a href="#L-613"><span class="linenos">613</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-614"><a href="#L-614"><span class="linenos">614</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
</span><span id="L-615"><a href="#L-615"><span class="linenos">615</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="L-616"><a href="#L-616"><span class="linenos">616</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="L-617"><a href="#L-617"><span class="linenos">617</span></a>
</span><span id="L-618"><a href="#L-618"><span class="linenos">618</span></a> <span class="k">return</span> <span class="n">import_dobs_string</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">full_output</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="n">separator_insertion</span><span class="p">)</span>
</span><span id="L-619"><a href="#L-619"><span class="linenos">619</span></a>
</span><span id="L-620"><a href="#L-620"><span class="linenos">620</span></a>
</span><span id="L-621"><a href="#L-621"><span class="linenos">621</span></a><span class="k">def</span> <span class="nf">_dobsdict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
</span><span id="L-622"><a href="#L-622"><span class="linenos">622</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
</span><span id="L-623"><a href="#L-623"><span class="linenos">623</span></a> <span class="n">iters</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-624"><a href="#L-624"><span class="linenos">624</span></a> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
</span><span id="L-625"><a href="#L-625"><span class="linenos">625</span></a> <span class="k">if</span> <span class="n">k</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;#value&#39;</span><span class="p">):</span>
</span><span id="L-626"><a href="#L-626"><span class="linenos">626</span></a> <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]:</span>
</span><span id="L-627"><a href="#L-627"><span class="linenos">627</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="n">li</span>
</span><span id="L-628"><a href="#L-628"><span class="linenos">628</span></a> <span class="k">return</span> <span class="n">iters</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-629"><a href="#L-629"><span class="linenos">629</span></a> <span class="k">elif</span> <span class="n">k</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;#&#39;</span><span class="p">):</span>
</span><span id="L-630"><a href="#L-630"><span class="linenos">630</span></a> <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]:</span>
</span><span id="L-631"><a href="#L-631"><span class="linenos">631</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="n">li</span>
</span><span id="L-632"><a href="#L-632"><span class="linenos">632</span></a> <span class="n">iters</span> <span class="o">=</span> <span class="s1">&#39;&lt;array&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">iters</span> <span class="o">+</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">array&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span>
</span><span id="L-633"><a href="#L-633"><span class="linenos">633</span></a> <span class="k">return</span> <span class="n">iters</span>
</span><span id="L-634"><a href="#L-634"><span class="linenos">634</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="nb">dict</span><span class="p">):</span>
</span><span id="L-635"><a href="#L-635"><span class="linenos">635</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="n">_dobsdict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;&lt;</span><span class="si">%s%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
</span><span id="L-636"><a href="#L-636"><span class="linenos">636</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="L-637"><a href="#L-637"><span class="linenos">637</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])</span> <span class="o">&gt;</span> <span class="mi">100</span><span class="p">:</span>
</span><span id="L-638"><a href="#L-638"><span class="linenos">638</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; </span><span class="se">\n</span><span class="s1">&lt;</span><span class="si">%s%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
</span><span id="L-639"><a href="#L-639"><span class="linenos">639</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-640"><a href="#L-640"><span class="linenos">640</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt; &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; &lt;</span><span class="si">%s%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
</span><span id="L-641"><a href="#L-641"><span class="linenos">641</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="nb">list</span><span class="p">):</span>
</span><span id="L-642"><a href="#L-642"><span class="linenos">642</span></a> <span class="n">tmps</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-643"><a href="#L-643"><span class="linenos">643</span></a> <span class="k">if</span> <span class="n">k</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;edata&#39;</span><span class="p">,</span> <span class="s1">&#39;cdata&#39;</span><span class="p">]:</span>
</span><span id="L-644"><a href="#L-644"><span class="linenos">644</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])):</span>
</span><span id="L-645"><a href="#L-645"><span class="linenos">645</span></a> <span class="n">tmps</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="n">_dobsdict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">i</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;&lt;/</span><span class="si">%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span>
</span><span id="L-646"><a href="#L-646"><span class="linenos">646</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-647"><a href="#L-647"><span class="linenos">647</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])):</span>
</span><span id="L-648"><a href="#L-648"><span class="linenos">648</span></a> <span class="n">tmps</span> <span class="o">+=</span> <span class="n">_dobsdict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="L-649"><a href="#L-649"><span class="linenos">649</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="n">tmps</span>
</span><span id="L-650"><a href="#L-650"><span class="linenos">650</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
</span><span id="L-651"><a href="#L-651"><span class="linenos">651</span></a> <span class="n">iters</span> <span class="o">+=</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&gt; &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">k</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39; &lt;</span><span class="si">%s%s</span><span class="s1">&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
</span><span id="L-652"><a href="#L-652"><span class="linenos">652</span></a> <span class="k">elif</span> <span class="ow">not</span> <span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]:</span>
</span><span id="L-653"><a href="#L-653"><span class="linenos">653</span></a> <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-654"><a href="#L-654"><span class="linenos">654</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-655"><a href="#L-655"><span class="linenos">655</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Type&#39;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">k</span><span class="p">]),</span> <span class="s1">&#39;not supported in export!&#39;</span><span class="p">)</span>
</span><span id="L-656"><a href="#L-656"><span class="linenos">656</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-657"><a href="#L-657"><span class="linenos">657</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Type&#39;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">d</span><span class="p">),</span> <span class="s1">&#39;not supported in export!&#39;</span><span class="p">)</span>
</span><span id="L-658"><a href="#L-658"><span class="linenos">658</span></a> <span class="k">return</span> <span class="n">iters</span>
</span><span id="L-659"><a href="#L-659"><span class="linenos">659</span></a>
</span><span id="L-660"><a href="#L-660"><span class="linenos">660</span></a>
</span><span id="L-661"><a href="#L-661"><span class="linenos">661</span></a><span class="k">def</span> <span class="nf">_dobsdict_to_xmlstring_spaces</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">space</span><span class="o">=</span><span class="s1">&#39; &#39;</span><span class="p">):</span>
</span><span id="L-662"><a href="#L-662"><span class="linenos">662</span></a> <span class="n">s</span> <span class="o">=</span> <span class="n">_dobsdict_to_xmlstring</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
</span><span id="L-663"><a href="#L-663"><span class="linenos">663</span></a> <span class="n">o</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-664"><a href="#L-664"><span class="linenos">664</span></a> <span class="n">c</span> <span class="o">=</span> <span class="mi">0</span>
</span><span id="L-665"><a href="#L-665"><span class="linenos">665</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">False</span>
</span><span id="L-666"><a href="#L-666"><span class="linenos">666</span></a> <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">s</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">):</span>
</span><span id="L-667"><a href="#L-667"><span class="linenos">667</span></a> <span class="k">if</span> <span class="n">li</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)):</span>
</span><span id="L-668"><a href="#L-668"><span class="linenos">668</span></a> <span class="n">c</span> <span class="o">-=</span> <span class="mi">1</span>
</span><span id="L-669"><a href="#L-669"><span class="linenos">669</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">True</span>
</span><span id="L-670"><a href="#L-670"><span class="linenos">670</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">c</span><span class="p">):</span>
</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">space</span>
</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">li</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a> <span class="k">if</span> <span class="n">li</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">&#39;&lt;&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">cm</span><span class="p">:</span>
</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="s1">&#39;&lt;</span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;/&#39;</span><span class="p">)</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a> <span class="n">c</span> <span class="o">+=</span> <span class="mi">1</span>
</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">False</span>
</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a> <span class="k">return</span> <span class="n">o</span>
</span><span id="L-678"><a href="#L-678"><span class="linenos">678</span></a>
</span><span id="L-679"><a href="#L-679"><span class="linenos">679</span></a>
</span><span id="L-680"><a href="#L-680"><span class="linenos">680</span></a><span class="k">def</span> <span class="nf">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;dobs v1.0&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
</span><span id="L-681"><a href="#L-681"><span class="linenos">681</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Generate the string for the export of a list of Obs or structures containing Obs</span>
</span><span id="L-682"><a href="#L-682"><span class="linenos">682</span></a><span class="sd"> to a .xml.gz file according to the Zeuthen dobs format.</span>
</span><span id="L-683"><a href="#L-683"><span class="linenos">683</span></a>
</span><span id="L-684"><a href="#L-684"><span class="linenos">684</span></a><span class="sd"> Tags are not written or recovered automatically. The separator |is removed from the replica names.</span>
</span><span id="L-685"><a href="#L-685"><span class="linenos">685</span></a>
</span><span id="L-686"><a href="#L-686"><span class="linenos">686</span></a><span class="sd"> Parameters</span>
</span><span id="L-687"><a href="#L-687"><span class="linenos">687</span></a><span class="sd"> ----------</span>
</span><span id="L-688"><a href="#L-688"><span class="linenos">688</span></a><span class="sd"> obsl : list</span>
</span><span id="L-689"><a href="#L-689"><span class="linenos">689</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="L-690"><a href="#L-690"><span class="linenos">690</span></a><span class="sd"> The Obs inside a structure do not have to be defined on the same set of configurations,</span>
</span><span id="L-691"><a href="#L-691"><span class="linenos">691</span></a><span class="sd"> but the storage requirement is increased, if this is not the case.</span>
</span><span id="L-692"><a href="#L-692"><span class="linenos">692</span></a><span class="sd"> name : str</span>
</span><span id="L-693"><a href="#L-693"><span class="linenos">693</span></a><span class="sd"> The name of the observable.</span>
</span><span id="L-694"><a href="#L-694"><span class="linenos">694</span></a><span class="sd"> spec : str</span>
</span><span id="L-695"><a href="#L-695"><span class="linenos">695</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="L-696"><a href="#L-696"><span class="linenos">696</span></a><span class="sd"> origin : str</span>
</span><span id="L-697"><a href="#L-697"><span class="linenos">697</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="L-698"><a href="#L-698"><span class="linenos">698</span></a><span class="sd"> symbol : list</span>
</span><span id="L-699"><a href="#L-699"><span class="linenos">699</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="L-700"><a href="#L-700"><span class="linenos">700</span></a><span class="sd"> who : str</span>
</span><span id="L-701"><a href="#L-701"><span class="linenos">701</span></a><span class="sd"> Provide the name of the person that exports the data.</span>
</span><span id="L-702"><a href="#L-702"><span class="linenos">702</span></a><span class="sd"> enstags : dict</span>
</span><span id="L-703"><a href="#L-703"><span class="linenos">703</span></a><span class="sd"> Provide alternative enstag for ensembles in the form enstags = {ename: enstag}</span>
</span><span id="L-704"><a href="#L-704"><span class="linenos">704</span></a><span class="sd"> Otherwise, the ensemble name is used.</span>
</span><span id="L-705"><a href="#L-705"><span class="linenos">705</span></a>
</span><span id="L-706"><a href="#L-706"><span class="linenos">706</span></a><span class="sd"> Returns</span>
</span><span id="L-707"><a href="#L-707"><span class="linenos">707</span></a><span class="sd"> -------</span>
</span><span id="L-708"><a href="#L-708"><span class="linenos">708</span></a><span class="sd"> xml_str : str</span>
</span><span id="L-709"><a href="#L-709"><span class="linenos">709</span></a><span class="sd"> XML string generated from the data</span>
</span><span id="L-710"><a href="#L-710"><span class="linenos">710</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="L-711"><a href="#L-711"><span class="linenos">711</span></a> <span class="k">if</span> <span class="n">enstags</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="L-712"><a href="#L-712"><span class="linenos">712</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-713"><a href="#L-713"><span class="linenos">713</span></a> <span class="n">od</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-714"><a href="#L-714"><span class="linenos">714</span></a> <span class="n">r_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-715"><a href="#L-715"><span class="linenos">715</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="L-716"><a href="#L-716"><span class="linenos">716</span></a> <span class="n">r_names</span> <span class="o">+=</span> <span class="p">[</span><span class="n">name</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span> <span class="k">if</span> <span class="n">name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">mc_names</span><span class="p">]</span>
</span><span id="L-717"><a href="#L-717"><span class="linenos">717</span></a> <span class="n">r_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">r_names</span><span class="p">))</span>
</span><span id="L-718"><a href="#L-718"><span class="linenos">718</span></a> <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">n</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">r_names</span><span class="p">]))</span>
</span><span id="L-719"><a href="#L-719"><span class="linenos">719</span></a> <span class="k">for</span> <span class="n">tmpname</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
</span><span id="L-720"><a href="#L-720"><span class="linenos">720</span></a> <span class="k">if</span> <span class="n">tmpname</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">enstags</span><span class="p">:</span>
</span><span id="L-721"><a href="#L-721"><span class="linenos">721</span></a> <span class="n">enstags</span><span class="p">[</span><span class="n">tmpname</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmpname</span>
</span><span id="L-722"><a href="#L-722"><span class="linenos">722</span></a> <span class="n">ne</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">mc_names</span><span class="p">))</span>
</span><span id="L-723"><a href="#L-723"><span class="linenos">723</span></a> <span class="n">cov_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-724"><a href="#L-724"><span class="linenos">724</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="L-725"><a href="#L-725"><span class="linenos">725</span></a> <span class="n">cov_names</span> <span class="o">+=</span> <span class="nb">list</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span>
</span><span id="L-726"><a href="#L-726"><span class="linenos">726</span></a> <span class="n">cov_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">cov_names</span><span class="p">))</span>
</span><span id="L-727"><a href="#L-727"><span class="linenos">727</span></a> <span class="n">nc</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">cov_names</span><span class="p">))</span>
</span><span id="L-728"><a href="#L-728"><span class="linenos">728</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-729"><a href="#L-729"><span class="linenos">729</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;SCHEMA&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;NAME&#39;</span><span class="p">:</span> <span class="s1">&#39;lattobs&#39;</span><span class="p">,</span> <span class="s1">&#39;VERSION&#39;</span><span class="p">:</span> <span class="s1">&#39;1.0&#39;</span><span class="p">}</span>
</span><span id="L-730"><a href="#L-730"><span class="linenos">730</span></a> <span class="k">if</span> <span class="n">who</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="L-731"><a href="#L-731"><span class="linenos">731</span></a> <span class="n">who</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
</span><span id="L-732"><a href="#L-732"><span class="linenos">732</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
</span><span id="L-733"><a href="#L-733"><span class="linenos">733</span></a> <span class="s1">&#39;who&#39;</span><span class="p">:</span> <span class="n">who</span><span class="p">,</span>
</span><span id="L-734"><a href="#L-734"><span class="linenos">734</span></a> <span class="s1">&#39;date&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">())[:</span><span class="o">-</span><span class="mi">7</span><span class="p">],</span>
</span><span id="L-735"><a href="#L-735"><span class="linenos">735</span></a> <span class="s1">&#39;host&#39;</span><span class="p">:</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">(),</span>
</span><span id="L-736"><a href="#L-736"><span class="linenos">736</span></a> <span class="s1">&#39;tool&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="s1">&#39;pyerrors&#39;</span><span class="p">,</span> <span class="s1">&#39;version&#39;</span><span class="p">:</span> <span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">}}</span>
</span><span id="L-737"><a href="#L-737"><span class="linenos">737</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;dobs&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-738"><a href="#L-738"><span class="linenos">738</span></a> <span class="n">pd</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;dobs&#39;</span><span class="p">]</span>
</span><span id="L-739"><a href="#L-739"><span class="linenos">739</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;spec&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">spec</span>
</span><span id="L-740"><a href="#L-740"><span class="linenos">740</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">origin</span>
</span><span id="L-741"><a href="#L-741"><span class="linenos">741</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
</span><span id="L-742"><a href="#L-742"><span class="linenos">742</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-743"><a href="#L-743"><span class="linenos">743</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;val&#39;</span>
</span><span id="L-744"><a href="#L-744"><span class="linenos">744</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1 f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="L-745"><a href="#L-745"><span class="linenos">745</span></a> <span class="n">osymbol</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-746"><a href="#L-746"><span class="linenos">746</span></a> <span class="k">if</span> <span class="n">symbol</span><span class="p">:</span>
</span><span id="L-747"><a href="#L-747"><span class="linenos">747</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">symbol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
</span><span id="L-748"><a href="#L-748"><span class="linenos">748</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list!&#39;</span><span class="p">)</span>
</span><span id="L-749"><a href="#L-749"><span class="linenos">749</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)):</span>
</span><span id="L-750"><a href="#L-750"><span class="linenos">750</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list of lenght 0 or </span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)))</span>
</span><span id="L-751"><a href="#L-751"><span class="linenos">751</span></a> <span class="n">osymbol</span> <span class="o">=</span> <span class="n">symbol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="L-752"><a href="#L-752"><span class="linenos">752</span></a> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">symbol</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
</span><span id="L-753"><a href="#L-753"><span class="linenos">753</span></a> <span class="n">osymbol</span> <span class="o">+=</span> <span class="s1">&#39; </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">s</span>
</span><span id="L-754"><a href="#L-754"><span class="linenos">754</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">osymbol</span>
</span><span id="L-755"><a href="#L-755"><span class="linenos">755</span></a>
</span><span id="L-756"><a href="#L-756"><span class="linenos">756</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;#values&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">])]</span>
</span><span id="L-757"><a href="#L-757"><span class="linenos">757</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;ne&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ne</span><span class="p">)</span>
</span><span id="L-758"><a href="#L-758"><span class="linenos">758</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;nc&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">nc</span><span class="p">)</span>
</span><span id="L-759"><a href="#L-759"><span class="linenos">759</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;edata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-760"><a href="#L-760"><span class="linenos">760</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
</span><span id="L-761"><a href="#L-761"><span class="linenos">761</span></a> <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-762"><a href="#L-762"><span class="linenos">762</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;enstag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">enstags</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
</span><span id="L-763"><a href="#L-763"><span class="linenos">763</span></a> <span class="n">onames</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">([</span><span class="n">n</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">r_names</span> <span class="k">if</span> <span class="p">(</span><span class="n">n</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">==</span> <span class="n">name</span><span class="p">)])</span>
</span><span id="L-764"><a href="#L-764"><span class="linenos">764</span></a> <span class="n">nr</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">onames</span><span class="p">)</span>
</span><span id="L-765"><a href="#L-765"><span class="linenos">765</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;nr&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">nr</span>
</span><span id="L-766"><a href="#L-766"><span class="linenos">766</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-767"><a href="#L-767"><span class="linenos">767</span></a>
</span><span id="L-768"><a href="#L-768"><span class="linenos">768</span></a> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nr</span><span class="p">):</span>
</span><span id="L-769"><a href="#L-769"><span class="linenos">769</span></a> <span class="n">ad</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-770"><a href="#L-770"><span class="linenos">770</span></a> <span class="n">repname</span> <span class="o">=</span> <span class="n">onames</span><span class="p">[</span><span class="n">r</span><span class="p">]</span>
</span><span id="L-771"><a href="#L-771"><span class="linenos">771</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">repname</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
</span><span id="L-772"><a href="#L-772"><span class="linenos">772</span></a> <span class="n">idx</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">repname</span><span class="p">,</span> <span class="p">[])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">])</span>
</span><span id="L-773"><a href="#L-773"><span class="linenos">773</span></a> <span class="n">Nconf</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
</span><span id="L-774"><a href="#L-774"><span class="linenos">774</span></a> <span class="n">layout</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> i f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">Nconf</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="L-775"><a href="#L-775"><span class="linenos">775</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">layout</span>
</span><span id="L-776"><a href="#L-776"><span class="linenos">776</span></a> <span class="n">data</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-777"><a href="#L-777"><span class="linenos">777</span></a> <span class="n">counters</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">]</span>
</span><span id="L-778"><a href="#L-778"><span class="linenos">778</span></a> <span class="n">offsets</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">repname</span><span class="p">]</span> <span class="o">-</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">if</span> <span class="n">repname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span> <span class="k">else</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">]</span>
</span><span id="L-779"><a href="#L-779"><span class="linenos">779</span></a> <span class="k">for</span> <span class="n">ci</span> <span class="ow">in</span> <span class="n">idx</span><span class="p">:</span>
</span><span id="L-780"><a href="#L-780"><span class="linenos">780</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="n">ci</span>
</span><span id="L-781"><a href="#L-781"><span class="linenos">781</span></a> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)):</span>
</span><span id="L-782"><a href="#L-782"><span class="linenos">782</span></a> <span class="n">o</span> <span class="o">=</span> <span class="n">obsl</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span>
</span><span id="L-783"><a href="#L-783"><span class="linenos">783</span></a> <span class="k">if</span> <span class="n">repname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">:</span>
</span><span id="L-784"><a href="#L-784"><span class="linenos">784</span></a> <span class="k">if</span> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-785"><a href="#L-785"><span class="linenos">785</span></a> <span class="n">num</span> <span class="o">=</span> <span class="mi">0</span>
</span><span id="L-786"><a href="#L-786"><span class="linenos">786</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-787"><a href="#L-787"><span class="linenos">787</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-788"><a href="#L-788"><span class="linenos">788</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-789"><a href="#L-789"><span class="linenos">789</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="L-790"><a href="#L-790"><span class="linenos">790</span></a> <span class="k">continue</span>
</span><span id="L-791"><a href="#L-791"><span class="linenos">791</span></a> <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">repname</span><span class="p">][</span><span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]]</span> <span class="o">==</span> <span class="n">ci</span><span class="p">:</span>
</span><span id="L-792"><a href="#L-792"><span class="linenos">792</span></a> <span class="n">num</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">repname</span><span class="p">][</span><span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]]</span> <span class="o">+</span> <span class="n">offsets</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span>
</span><span id="L-793"><a href="#L-793"><span class="linenos">793</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-794"><a href="#L-794"><span class="linenos">794</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-795"><a href="#L-795"><span class="linenos">795</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-796"><a href="#L-796"><span class="linenos">796</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="L-797"><a href="#L-797"><span class="linenos">797</span></a> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
</span><span id="L-798"><a href="#L-798"><span class="linenos">798</span></a> <span class="k">if</span> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">repname</span><span class="p">]):</span>
</span><span id="L-799"><a href="#L-799"><span class="linenos">799</span></a> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
</span><span id="L-800"><a href="#L-800"><span class="linenos">800</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-801"><a href="#L-801"><span class="linenos">801</span></a> <span class="n">num</span> <span class="o">=</span> <span class="mi">0</span>
</span><span id="L-802"><a href="#L-802"><span class="linenos">802</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-803"><a href="#L-803"><span class="linenos">803</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-804"><a href="#L-804"><span class="linenos">804</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-805"><a href="#L-805"><span class="linenos">805</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="L-806"><a href="#L-806"><span class="linenos">806</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-807"><a href="#L-807"><span class="linenos">807</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-808"><a href="#L-808"><span class="linenos">808</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-809"><a href="#L-809"><span class="linenos">809</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
</span><span id="L-810"><a href="#L-810"><span class="linenos">810</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ad</span><span class="p">)</span>
</span><span id="L-811"><a href="#L-811"><span class="linenos">811</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;edata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
</span><span id="L-812"><a href="#L-812"><span class="linenos">812</span></a>
</span><span id="L-813"><a href="#L-813"><span class="linenos">813</span></a> <span class="n">allcov</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-814"><a href="#L-814"><span class="linenos">814</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="L-815"><a href="#L-815"><span class="linenos">815</span></a> <span class="k">for</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
</span><span id="L-816"><a href="#L-816"><span class="linenos">816</span></a> <span class="k">if</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">allcov</span><span class="p">:</span>
</span><span id="L-817"><a href="#L-817"><span class="linenos">817</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">],</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">):</span>
</span><span id="L-818"><a href="#L-818"><span class="linenos">818</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Inconsistent covariance matrices for </span><span class="si">%s</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">cname</span><span class="p">))</span>
</span><span id="L-819"><a href="#L-819"><span class="linenos">819</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-820"><a href="#L-820"><span class="linenos">820</span></a> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span>
</span><span id="L-821"><a href="#L-821"><span class="linenos">821</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="L-822"><a href="#L-822"><span class="linenos">822</span></a> <span class="k">for</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">cov_names</span><span class="p">:</span>
</span><span id="L-823"><a href="#L-823"><span class="linenos">823</span></a> <span class="n">cd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-824"><a href="#L-824"><span class="linenos">824</span></a> <span class="n">cd</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cname</span>
</span><span id="L-825"><a href="#L-825"><span class="linenos">825</span></a>
</span><span id="L-826"><a href="#L-826"><span class="linenos">826</span></a> <span class="n">covd</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;id&#39;</span><span class="p">:</span> <span class="s1">&#39;cov&#39;</span><span class="p">}</span>
</span><span id="L-827"><a href="#L-827"><span class="linenos">827</span></a> <span class="k">if</span> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">():</span>
</span><span id="L-828"><a href="#L-828"><span class="linenos">828</span></a> <span class="n">ncov</span> <span class="o">=</span> <span class="mi">1</span>
</span><span id="L-829"><a href="#L-829"><span class="linenos">829</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1 1 f&#39;</span>
</span><span id="L-830"><a href="#L-830"><span class="linenos">830</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%1.14e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">])</span>
</span><span id="L-831"><a href="#L-831"><span class="linenos">831</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-832"><a href="#L-832"><span class="linenos">832</span></a> <span class="n">shape</span> <span class="o">=</span> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span>
</span><span id="L-833"><a href="#L-833"><span class="linenos">833</span></a> <span class="k">assert</span> <span class="p">(</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
</span><span id="L-834"><a href="#L-834"><span class="linenos">834</span></a> <span class="n">ncov</span> <span class="o">=</span> <span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="L-835"><a href="#L-835"><span class="linenos">835</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> </span><span class="si">%d</span><span class="s1"> f&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ncov</span><span class="p">,</span> <span class="n">ncov</span><span class="p">)</span>
</span><span id="L-836"><a href="#L-836"><span class="linenos">836</span></a> <span class="n">ds</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-837"><a href="#L-837"><span class="linenos">837</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
</span><span id="L-838"><a href="#L-838"><span class="linenos">838</span></a> <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
</span><span id="L-839"><a href="#L-839"><span class="linenos">839</span></a> <span class="n">val</span> <span class="o">=</span> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span>
</span><span id="L-840"><a href="#L-840"><span class="linenos">840</span></a> <span class="k">if</span> <span class="n">val</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-841"><a href="#L-841"><span class="linenos">841</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-842"><a href="#L-842"><span class="linenos">842</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-843"><a href="#L-843"><span class="linenos">843</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.14e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">val</span><span class="p">)</span>
</span><span id="L-844"><a href="#L-844"><span class="linenos">844</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="L-845"><a href="#L-845"><span class="linenos">845</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ds</span>
</span><span id="L-846"><a href="#L-846"><span class="linenos">846</span></a>
</span><span id="L-847"><a href="#L-847"><span class="linenos">847</span></a> <span class="n">gradd</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;id&#39;</span><span class="p">:</span> <span class="s1">&#39;grad&#39;</span><span class="p">}</span>
</span><span id="L-848"><a href="#L-848"><span class="linenos">848</span></a> <span class="n">gradd</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ncov</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="L-849"><a href="#L-849"><span class="linenos">849</span></a> <span class="n">ds</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="L-850"><a href="#L-850"><span class="linenos">850</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
</span><span id="L-851"><a href="#L-851"><span class="linenos">851</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="L-852"><a href="#L-852"><span class="linenos">852</span></a> <span class="k">if</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
</span><span id="L-853"><a href="#L-853"><span class="linenos">853</span></a> <span class="n">val</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">item</span><span class="p">()</span>
</span><span id="L-854"><a href="#L-854"><span class="linenos">854</span></a> <span class="k">if</span> <span class="n">val</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="L-855"><a href="#L-855"><span class="linenos">855</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.14e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">val</span><span class="p">)</span>
</span><span id="L-856"><a href="#L-856"><span class="linenos">856</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-857"><a href="#L-857"><span class="linenos">857</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-858"><a href="#L-858"><span class="linenos">858</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-859"><a href="#L-859"><span class="linenos">859</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="L-860"><a href="#L-860"><span class="linenos">860</span></a> <span class="n">gradd</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ds</span>
</span><span id="L-861"><a href="#L-861"><span class="linenos">861</span></a> <span class="n">cd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">covd</span><span class="p">,</span> <span class="n">gradd</span><span class="p">]</span>
</span><span id="L-862"><a href="#L-862"><span class="linenos">862</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cd</span><span class="p">)</span>
</span><span id="L-863"><a href="#L-863"><span class="linenos">863</span></a>
</span><span id="L-864"><a href="#L-864"><span class="linenos">864</span></a> <span class="n">rs</span> <span class="o">=</span> <span class="s1">&#39;&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">_dobsdict_to_xmlstring_spaces</span><span class="p">(</span><span class="n">od</span><span class="p">)</span>
</span><span id="L-865"><a href="#L-865"><span class="linenos">865</span></a>
</span><span id="L-866"><a href="#L-866"><span class="linenos">866</span></a> <span class="k">return</span> <span class="n">rs</span>
</span><span id="L-867"><a href="#L-867"><span class="linenos">867</span></a>
</span><span id="L-868"><a href="#L-868"><span class="linenos">868</span></a>
</span><span id="L-869"><a href="#L-869"><span class="linenos">869</span></a><span class="k">def</span> <span class="nf">write_dobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;dobs v1.0&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="L-870"><a href="#L-870"><span class="linenos">870</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .xml.gz file</span>
</span><span id="L-871"><a href="#L-871"><span class="linenos">871</span></a><span class="sd"> according to the Zeuthen dobs format.</span>
</span><span id="L-872"><a href="#L-872"><span class="linenos">872</span></a>
</span><span id="L-873"><a href="#L-873"><span class="linenos">873</span></a><span class="sd"> Tags are not written or recovered automatically. The separator | is removed from the replica names.</span>
</span><span id="L-874"><a href="#L-874"><span class="linenos">874</span></a>
</span><span id="L-875"><a href="#L-875"><span class="linenos">875</span></a><span class="sd"> Parameters</span>
</span><span id="L-876"><a href="#L-876"><span class="linenos">876</span></a><span class="sd"> ----------</span>
</span><span id="L-877"><a href="#L-877"><span class="linenos">877</span></a><span class="sd"> obsl : list</span>
</span><span id="L-878"><a href="#L-878"><span class="linenos">878</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="L-879"><a href="#L-879"><span class="linenos">879</span></a><span class="sd"> The Obs inside a structure do not have to be defined on the same set of configurations,</span>
</span><span id="L-880"><a href="#L-880"><span class="linenos">880</span></a><span class="sd"> but the storage requirement is increased, if this is not the case.</span>
</span><span id="L-881"><a href="#L-881"><span class="linenos">881</span></a><span class="sd"> fname : str</span>
</span><span id="L-882"><a href="#L-882"><span class="linenos">882</span></a><span class="sd"> Filename of the output file.</span>
</span><span id="L-883"><a href="#L-883"><span class="linenos">883</span></a><span class="sd"> name : str</span>
</span><span id="L-884"><a href="#L-884"><span class="linenos">884</span></a><span class="sd"> The name of the observable.</span>
</span><span id="L-885"><a href="#L-885"><span class="linenos">885</span></a><span class="sd"> spec : str</span>
</span><span id="L-886"><a href="#L-886"><span class="linenos">886</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="L-887"><a href="#L-887"><span class="linenos">887</span></a><span class="sd"> origin : str</span>
</span><span id="L-888"><a href="#L-888"><span class="linenos">888</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="L-889"><a href="#L-889"><span class="linenos">889</span></a><span class="sd"> symbol : list</span>
</span><span id="L-890"><a href="#L-890"><span class="linenos">890</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="L-891"><a href="#L-891"><span class="linenos">891</span></a><span class="sd"> who : str</span>
</span><span id="L-892"><a href="#L-892"><span class="linenos">892</span></a><span class="sd"> Provide the name of the person that exports the data.</span>
</span><span id="L-893"><a href="#L-893"><span class="linenos">893</span></a><span class="sd"> enstags : dict</span>
</span><span id="L-894"><a href="#L-894"><span class="linenos">894</span></a><span class="sd"> Provide alternative enstag for ensembles in the form enstags = {ename: enstag}</span>
</span><span id="L-895"><a href="#L-895"><span class="linenos">895</span></a><span class="sd"> Otherwise, the ensemble name is used.</span>
</span><span id="L-896"><a href="#L-896"><span class="linenos">896</span></a><span class="sd"> gz : bool</span>
</span><span id="L-897"><a href="#L-897"><span class="linenos">897</span></a><span class="sd"> If True, the output is a gzipped XML. If False, the output is a XML file.</span>
</span><span id="L-898"><a href="#L-898"><span class="linenos">898</span></a>
</span><span id="L-899"><a href="#L-899"><span class="linenos">899</span></a><span class="sd"> Returns</span>
</span><span id="L-900"><a href="#L-900"><span class="linenos">900</span></a><span class="sd"> -------</span>
</span><span id="L-901"><a href="#L-901"><span class="linenos">901</span></a><span class="sd"> None</span>
</span><span id="L-902"><a href="#L-902"><span class="linenos">902</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="L-903"><a href="#L-903"><span class="linenos">903</span></a> <span class="k">if</span> <span class="n">enstags</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="L-904"><a href="#L-904"><span class="linenos">904</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="L-905"><a href="#L-905"><span class="linenos">905</span></a>
</span><span id="L-906"><a href="#L-906"><span class="linenos">906</span></a> <span class="n">dobsstring</span> <span class="o">=</span> <span class="n">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">who</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="n">enstags</span><span class="p">)</span>
</span><span id="L-907"><a href="#L-907"><span class="linenos">907</span></a>
</span><span id="L-908"><a href="#L-908"><span class="linenos">908</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-909"><a href="#L-909"><span class="linenos">909</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="L-910"><a href="#L-910"><span class="linenos">910</span></a>
</span><span id="L-911"><a href="#L-911"><span class="linenos">911</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="L-912"><a href="#L-912"><span class="linenos">912</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="L-913"><a href="#L-913"><span class="linenos">913</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="L-914"><a href="#L-914"><span class="linenos">914</span></a>
</span><span id="L-915"><a href="#L-915"><span class="linenos">915</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
</span><span id="L-916"><a href="#L-916"><span class="linenos">916</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
</span><span id="L-917"><a href="#L-917"><span class="linenos">917</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="L-918"><a href="#L-918"><span class="linenos">918</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
</span><span id="L-919"><a href="#L-919"><span class="linenos">919</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="p">)</span>
</span><span id="L-920"><a href="#L-920"><span class="linenos">920</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
</span></pre></div>
</section>
<section id="create_pobs_string">
<input id="create_pobs_string-view-source" class="view-source-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<div class="attr function">
<span class="def">def</span>
<span class="name">create_pobs_string</span><span class="signature pdoc-code condensed">(<span class="param"><span class="n">obsl</span>, </span><span class="param"><span class="n">name</span>, </span><span class="param"><span class="n">spec</span><span class="o">=</span><span class="s1">&#39;&#39;</span>, </span><span class="param"><span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span>, </span><span class="param"><span class="n">symbol</span><span class="o">=</span><span class="p">[]</span>, </span><span class="param"><span class="n">enstag</span><span class="o">=</span><span class="kc">None</span></span><span class="return-annotation">):</span></span>
<label class="view-source-button" for="create_pobs_string-view-source"><span>View Source</span></label>
</div>
<a class="headerlink" href="#create_pobs_string"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="create_pobs_string-89"><a href="#create_pobs_string-89"><span class="linenos"> 89</span></a><span class="k">def</span> <span class="nf">create_pobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">enstag</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
</span><span id="create_pobs_string-90"><a href="#create_pobs_string-90"><span class="linenos"> 90</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to an xml string</span>
</span><span id="create_pobs_string-91"><a href="#create_pobs_string-91"><span class="linenos"> 91</span></a><span class="sd"> according to the Zeuthen pobs format.</span>
</span><span id="create_pobs_string-92"><a href="#create_pobs_string-92"><span class="linenos"> 92</span></a>
</span><span id="create_pobs_string-93"><a href="#create_pobs_string-93"><span class="linenos"> 93</span></a><span class="sd"> Tags are not written or recovered automatically. The separator | is removed from the replica names.</span>
</span><span id="create_pobs_string-94"><a href="#create_pobs_string-94"><span class="linenos"> 94</span></a>
</span><span id="create_pobs_string-95"><a href="#create_pobs_string-95"><span class="linenos"> 95</span></a><span class="sd"> Parameters</span>
</span><span id="create_pobs_string-96"><a href="#create_pobs_string-96"><span class="linenos"> 96</span></a><span class="sd"> ----------</span>
</span><span id="create_pobs_string-97"><a href="#create_pobs_string-97"><span class="linenos"> 97</span></a><span class="sd"> obsl : list</span>
</span><span id="create_pobs_string-98"><a href="#create_pobs_string-98"><span class="linenos"> 98</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="create_pobs_string-99"><a href="#create_pobs_string-99"><span class="linenos"> 99</span></a><span class="sd"> The Obs inside a structure have to be defined on the same ensemble.</span>
</span><span id="create_pobs_string-100"><a href="#create_pobs_string-100"><span class="linenos">100</span></a><span class="sd"> name : str</span>
</span><span id="create_pobs_string-101"><a href="#create_pobs_string-101"><span class="linenos">101</span></a><span class="sd"> The name of the observable.</span>
</span><span id="create_pobs_string-102"><a href="#create_pobs_string-102"><span class="linenos">102</span></a><span class="sd"> spec : str</span>
</span><span id="create_pobs_string-103"><a href="#create_pobs_string-103"><span class="linenos">103</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="create_pobs_string-104"><a href="#create_pobs_string-104"><span class="linenos">104</span></a><span class="sd"> origin : str</span>
</span><span id="create_pobs_string-105"><a href="#create_pobs_string-105"><span class="linenos">105</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="create_pobs_string-106"><a href="#create_pobs_string-106"><span class="linenos">106</span></a><span class="sd"> symbol : list</span>
</span><span id="create_pobs_string-107"><a href="#create_pobs_string-107"><span class="linenos">107</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="create_pobs_string-108"><a href="#create_pobs_string-108"><span class="linenos">108</span></a><span class="sd"> enstag : str</span>
</span><span id="create_pobs_string-109"><a href="#create_pobs_string-109"><span class="linenos">109</span></a><span class="sd"> Enstag that is written to pobs. If None, the ensemble name is used.</span>
</span><span id="create_pobs_string-110"><a href="#create_pobs_string-110"><span class="linenos">110</span></a>
</span><span id="create_pobs_string-111"><a href="#create_pobs_string-111"><span class="linenos">111</span></a><span class="sd"> Returns</span>
</span><span id="create_pobs_string-112"><a href="#create_pobs_string-112"><span class="linenos">112</span></a><span class="sd"> -------</span>
</span><span id="create_pobs_string-113"><a href="#create_pobs_string-113"><span class="linenos">113</span></a><span class="sd"> xml_str : str</span>
</span><span id="create_pobs_string-114"><a href="#create_pobs_string-114"><span class="linenos">114</span></a><span class="sd"> XML formatted string of the input data</span>
</span><span id="create_pobs_string-115"><a href="#create_pobs_string-115"><span class="linenos">115</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="create_pobs_string-116"><a href="#create_pobs_string-116"><span class="linenos">116</span></a>
</span><span id="create_pobs_string-117"><a href="#create_pobs_string-117"><span class="linenos">117</span></a> <span class="n">od</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_pobs_string-118"><a href="#create_pobs_string-118"><span class="linenos">118</span></a> <span class="n">ename</span> <span class="o">=</span> <span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="create_pobs_string-119"><a href="#create_pobs_string-119"><span class="linenos">119</span></a> <span class="n">names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
</span><span id="create_pobs_string-120"><a href="#create_pobs_string-120"><span class="linenos">120</span></a> <span class="n">nr</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
</span><span id="create_pobs_string-121"><a href="#create_pobs_string-121"><span class="linenos">121</span></a> <span class="n">onames</span> <span class="o">=</span> <span class="p">[</span><span class="n">name</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">]</span>
</span><span id="create_pobs_string-122"><a href="#create_pobs_string-122"><span class="linenos">122</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="create_pobs_string-123"><a href="#create_pobs_string-123"><span class="linenos">123</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
</span><span id="create_pobs_string-124"><a href="#create_pobs_string-124"><span class="linenos">124</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You try to export dobs to obs!&#39;</span><span class="p">)</span>
</span><span id="create_pobs_string-125"><a href="#create_pobs_string-125"><span class="linenos">125</span></a> <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">e_names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">ename</span><span class="p">:</span>
</span><span id="create_pobs_string-126"><a href="#create_pobs_string-126"><span class="linenos">126</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You try to export dobs to obs!&#39;</span><span class="p">)</span>
</span><span id="create_pobs_string-127"><a href="#create_pobs_string-127"><span class="linenos">127</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span> <span class="o">!=</span> <span class="n">nr</span><span class="p">:</span>
</span><span id="create_pobs_string-128"><a href="#create_pobs_string-128"><span class="linenos">128</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible obses in list&#39;</span><span class="p">)</span>
</span><span id="create_pobs_string-129"><a href="#create_pobs_string-129"><span class="linenos">129</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_pobs_string-130"><a href="#create_pobs_string-130"><span class="linenos">130</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;schema&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="s1">&#39;lattobs&#39;</span><span class="p">,</span> <span class="s1">&#39;version&#39;</span><span class="p">:</span> <span class="s1">&#39;1.0&#39;</span><span class="p">}</span>
</span><span id="create_pobs_string-131"><a href="#create_pobs_string-131"><span class="linenos">131</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
</span><span id="create_pobs_string-132"><a href="#create_pobs_string-132"><span class="linenos">132</span></a> <span class="s1">&#39;who&#39;</span><span class="p">:</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">(),</span>
</span><span id="create_pobs_string-133"><a href="#create_pobs_string-133"><span class="linenos">133</span></a> <span class="s1">&#39;date&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">())[:</span><span class="o">-</span><span class="mi">7</span><span class="p">],</span>
</span><span id="create_pobs_string-134"><a href="#create_pobs_string-134"><span class="linenos">134</span></a> <span class="s1">&#39;host&#39;</span><span class="p">:</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">(),</span>
</span><span id="create_pobs_string-135"><a href="#create_pobs_string-135"><span class="linenos">135</span></a> <span class="s1">&#39;tool&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="s1">&#39;pyerrors&#39;</span><span class="p">,</span> <span class="s1">&#39;version&#39;</span><span class="p">:</span> <span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">}}</span>
</span><span id="create_pobs_string-136"><a href="#create_pobs_string-136"><span class="linenos">136</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;pobs&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_pobs_string-137"><a href="#create_pobs_string-137"><span class="linenos">137</span></a> <span class="n">pd</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;observables&#39;</span><span class="p">][</span><span class="s1">&#39;pobs&#39;</span><span class="p">]</span>
</span><span id="create_pobs_string-138"><a href="#create_pobs_string-138"><span class="linenos">138</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;spec&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">spec</span>
</span><span id="create_pobs_string-139"><a href="#create_pobs_string-139"><span class="linenos">139</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">origin</span>
</span><span id="create_pobs_string-140"><a href="#create_pobs_string-140"><span class="linenos">140</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
</span><span id="create_pobs_string-141"><a href="#create_pobs_string-141"><span class="linenos">141</span></a> <span class="k">if</span> <span class="n">enstag</span><span class="p">:</span>
</span><span id="create_pobs_string-142"><a href="#create_pobs_string-142"><span class="linenos">142</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">enstag</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="create_pobs_string-143"><a href="#create_pobs_string-143"><span class="linenos">143</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;enstag has to be a string!&#39;</span><span class="p">)</span>
</span><span id="create_pobs_string-144"><a href="#create_pobs_string-144"><span class="linenos">144</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;enstag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">enstag</span>
</span><span id="create_pobs_string-145"><a href="#create_pobs_string-145"><span class="linenos">145</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_pobs_string-146"><a href="#create_pobs_string-146"><span class="linenos">146</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;enstag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ename</span>
</span><span id="create_pobs_string-147"><a href="#create_pobs_string-147"><span class="linenos">147</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;nr&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">nr</span><span class="p">)</span>
</span><span id="create_pobs_string-148"><a href="#create_pobs_string-148"><span class="linenos">148</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="create_pobs_string-149"><a href="#create_pobs_string-149"><span class="linenos">149</span></a> <span class="n">osymbol</span> <span class="o">=</span> <span class="s1">&#39;cfg&#39;</span>
</span><span id="create_pobs_string-150"><a href="#create_pobs_string-150"><span class="linenos">150</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">symbol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
</span><span id="create_pobs_string-151"><a href="#create_pobs_string-151"><span class="linenos">151</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list!&#39;</span><span class="p">)</span>
</span><span id="create_pobs_string-152"><a href="#create_pobs_string-152"><span class="linenos">152</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)):</span>
</span><span id="create_pobs_string-153"><a href="#create_pobs_string-153"><span class="linenos">153</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list of lenght 0 or </span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)))</span>
</span><span id="create_pobs_string-154"><a href="#create_pobs_string-154"><span class="linenos">154</span></a> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">symbol</span><span class="p">:</span>
</span><span id="create_pobs_string-155"><a href="#create_pobs_string-155"><span class="linenos">155</span></a> <span class="n">osymbol</span> <span class="o">+=</span> <span class="s1">&#39; </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">s</span>
</span><span id="create_pobs_string-156"><a href="#create_pobs_string-156"><span class="linenos">156</span></a> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nr</span><span class="p">):</span>
</span><span id="create_pobs_string-157"><a href="#create_pobs_string-157"><span class="linenos">157</span></a> <span class="n">ad</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_pobs_string-158"><a href="#create_pobs_string-158"><span class="linenos">158</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">onames</span><span class="p">[</span><span class="n">r</span><span class="p">]</span>
</span><span id="create_pobs_string-159"><a href="#create_pobs_string-159"><span class="linenos">159</span></a> <span class="n">Nconf</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]])</span>
</span><span id="create_pobs_string-160"><a href="#create_pobs_string-160"><span class="linenos">160</span></a> <span class="n">layout</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> i f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">Nconf</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="create_pobs_string-161"><a href="#create_pobs_string-161"><span class="linenos">161</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">layout</span>
</span><span id="create_pobs_string-162"><a href="#create_pobs_string-162"><span class="linenos">162</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">osymbol</span>
</span><span id="create_pobs_string-163"><a href="#create_pobs_string-163"><span class="linenos">163</span></a> <span class="n">data</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="create_pobs_string-164"><a href="#create_pobs_string-164"><span class="linenos">164</span></a> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">Nconf</span><span class="p">):</span>
</span><span id="create_pobs_string-165"><a href="#create_pobs_string-165"><span class="linenos">165</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="n">obsl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]][</span><span class="n">c</span><span class="p">]</span>
</span><span id="create_pobs_string-166"><a href="#create_pobs_string-166"><span class="linenos">166</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="create_pobs_string-167"><a href="#create_pobs_string-167"><span class="linenos">167</span></a> <span class="n">num</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]][</span><span class="n">c</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">names</span><span class="p">[</span><span class="n">r</span><span class="p">]]</span>
</span><span id="create_pobs_string-168"><a href="#create_pobs_string-168"><span class="linenos">168</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="create_pobs_string-169"><a href="#create_pobs_string-169"><span class="linenos">169</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_pobs_string-170"><a href="#create_pobs_string-170"><span class="linenos">170</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_pobs_string-171"><a href="#create_pobs_string-171"><span class="linenos">171</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="create_pobs_string-172"><a href="#create_pobs_string-172"><span class="linenos">172</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="create_pobs_string-173"><a href="#create_pobs_string-173"><span class="linenos">173</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
</span><span id="create_pobs_string-174"><a href="#create_pobs_string-174"><span class="linenos">174</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ad</span><span class="p">)</span>
</span><span id="create_pobs_string-175"><a href="#create_pobs_string-175"><span class="linenos">175</span></a>
</span><span id="create_pobs_string-176"><a href="#create_pobs_string-176"><span class="linenos">176</span></a> <span class="n">rs</span> <span class="o">=</span> <span class="s1">&#39;&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">_dict_to_xmlstring_spaces</span><span class="p">(</span><span class="n">od</span><span class="p">)</span>
</span><span id="create_pobs_string-177"><a href="#create_pobs_string-177"><span class="linenos">177</span></a> <span class="k">return</span> <span class="n">rs</span>
</span></pre></div>
<div class="docstring"><p>Export a list of Obs or structures containing Obs to an xml string
according to the Zeuthen pobs format.</p>
<p>Tags are not written or recovered automatically. The separator | is removed from the replica names.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>obsl</strong> (list):
List of Obs that will be exported.
The Obs inside a structure have to be defined on the same ensemble.</li>
<li><strong>name</strong> (str):
The name of the observable.</li>
<li><strong>spec</strong> (str):
Optional string that describes the contents of the file.</li>
<li><strong>origin</strong> (str):
Specify where the data has its origin.</li>
<li><strong>symbol</strong> (list):
A list of symbols that describe the observables to be written. May be empty.</li>
<li><strong>enstag</strong> (str):
Enstag that is written to pobs. If None, the ensemble name is used.</li>
</ul>
<h6 id="returns">Returns</h6>
<ul>
<li><strong>xml_str</strong> (str):
XML formatted string of the input data</li>
</ul>
</div>
</section>
<section id="write_pobs">
<input id="write_pobs-view-source" class="view-source-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<div class="attr function">
<span class="def">def</span>
<span class="name">write_pobs</span><span class="signature pdoc-code multiline">(<span class="param"> <span class="n">obsl</span>,</span><span class="param"> <span class="n">fname</span>,</span><span class="param"> <span class="n">name</span>,</span><span class="param"> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;&#39;</span>,</span><span class="param"> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span>,</span><span class="param"> <span class="n">symbol</span><span class="o">=</span><span class="p">[]</span>,</span><span class="param"> <span class="n">enstag</span><span class="o">=</span><span class="kc">None</span>,</span><span class="param"> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span></span><span class="return-annotation">):</span></span>
<label class="view-source-button" for="write_pobs-view-source"><span>View Source</span></label>
</div>
<a class="headerlink" href="#write_pobs"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="write_pobs-180"><a href="#write_pobs-180"><span class="linenos">180</span></a><span class="k">def</span> <span class="nf">write_pobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">enstag</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="write_pobs-181"><a href="#write_pobs-181"><span class="linenos">181</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .xml.gz file</span>
</span><span id="write_pobs-182"><a href="#write_pobs-182"><span class="linenos">182</span></a><span class="sd"> according to the Zeuthen pobs format.</span>
</span><span id="write_pobs-183"><a href="#write_pobs-183"><span class="linenos">183</span></a>
</span><span id="write_pobs-184"><a href="#write_pobs-184"><span class="linenos">184</span></a><span class="sd"> Tags are not written or recovered automatically. The separator | is removed from the replica names.</span>
</span><span id="write_pobs-185"><a href="#write_pobs-185"><span class="linenos">185</span></a>
</span><span id="write_pobs-186"><a href="#write_pobs-186"><span class="linenos">186</span></a><span class="sd"> Parameters</span>
</span><span id="write_pobs-187"><a href="#write_pobs-187"><span class="linenos">187</span></a><span class="sd"> ----------</span>
</span><span id="write_pobs-188"><a href="#write_pobs-188"><span class="linenos">188</span></a><span class="sd"> obsl : list</span>
</span><span id="write_pobs-189"><a href="#write_pobs-189"><span class="linenos">189</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="write_pobs-190"><a href="#write_pobs-190"><span class="linenos">190</span></a><span class="sd"> The Obs inside a structure have to be defined on the same ensemble.</span>
</span><span id="write_pobs-191"><a href="#write_pobs-191"><span class="linenos">191</span></a><span class="sd"> fname : str</span>
</span><span id="write_pobs-192"><a href="#write_pobs-192"><span class="linenos">192</span></a><span class="sd"> Filename of the output file.</span>
</span><span id="write_pobs-193"><a href="#write_pobs-193"><span class="linenos">193</span></a><span class="sd"> name : str</span>
</span><span id="write_pobs-194"><a href="#write_pobs-194"><span class="linenos">194</span></a><span class="sd"> The name of the observable.</span>
</span><span id="write_pobs-195"><a href="#write_pobs-195"><span class="linenos">195</span></a><span class="sd"> spec : str</span>
</span><span id="write_pobs-196"><a href="#write_pobs-196"><span class="linenos">196</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="write_pobs-197"><a href="#write_pobs-197"><span class="linenos">197</span></a><span class="sd"> origin : str</span>
</span><span id="write_pobs-198"><a href="#write_pobs-198"><span class="linenos">198</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="write_pobs-199"><a href="#write_pobs-199"><span class="linenos">199</span></a><span class="sd"> symbol : list</span>
</span><span id="write_pobs-200"><a href="#write_pobs-200"><span class="linenos">200</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="write_pobs-201"><a href="#write_pobs-201"><span class="linenos">201</span></a><span class="sd"> enstag : str</span>
</span><span id="write_pobs-202"><a href="#write_pobs-202"><span class="linenos">202</span></a><span class="sd"> Enstag that is written to pobs. If None, the ensemble name is used.</span>
</span><span id="write_pobs-203"><a href="#write_pobs-203"><span class="linenos">203</span></a><span class="sd"> gz : bool</span>
</span><span id="write_pobs-204"><a href="#write_pobs-204"><span class="linenos">204</span></a><span class="sd"> If True, the output is a gzipped xml. If False, the output is an xml file.</span>
</span><span id="write_pobs-205"><a href="#write_pobs-205"><span class="linenos">205</span></a>
</span><span id="write_pobs-206"><a href="#write_pobs-206"><span class="linenos">206</span></a><span class="sd"> Returns</span>
</span><span id="write_pobs-207"><a href="#write_pobs-207"><span class="linenos">207</span></a><span class="sd"> -------</span>
</span><span id="write_pobs-208"><a href="#write_pobs-208"><span class="linenos">208</span></a><span class="sd"> None</span>
</span><span id="write_pobs-209"><a href="#write_pobs-209"><span class="linenos">209</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="write_pobs-210"><a href="#write_pobs-210"><span class="linenos">210</span></a> <span class="n">pobsstring</span> <span class="o">=</span> <span class="n">create_pobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">enstag</span><span class="p">)</span>
</span><span id="write_pobs-211"><a href="#write_pobs-211"><span class="linenos">211</span></a>
</span><span id="write_pobs-212"><a href="#write_pobs-212"><span class="linenos">212</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="write_pobs-213"><a href="#write_pobs-213"><span class="linenos">213</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="write_pobs-214"><a href="#write_pobs-214"><span class="linenos">214</span></a>
</span><span id="write_pobs-215"><a href="#write_pobs-215"><span class="linenos">215</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="write_pobs-216"><a href="#write_pobs-216"><span class="linenos">216</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="write_pobs-217"><a href="#write_pobs-217"><span class="linenos">217</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="write_pobs-218"><a href="#write_pobs-218"><span class="linenos">218</span></a>
</span><span id="write_pobs-219"><a href="#write_pobs-219"><span class="linenos">219</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
</span><span id="write_pobs-220"><a href="#write_pobs-220"><span class="linenos">220</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">pobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
</span><span id="write_pobs-221"><a href="#write_pobs-221"><span class="linenos">221</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="write_pobs-222"><a href="#write_pobs-222"><span class="linenos">222</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
</span><span id="write_pobs-223"><a href="#write_pobs-223"><span class="linenos">223</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">pobsstring</span><span class="p">)</span>
</span><span id="write_pobs-224"><a href="#write_pobs-224"><span class="linenos">224</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
</span></pre></div>
<div class="docstring"><p>Export a list of Obs or structures containing Obs to a .xml.gz file
according to the Zeuthen pobs format.</p>
<p>Tags are not written or recovered automatically. The separator | is removed from the replica names.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>obsl</strong> (list):
List of Obs that will be exported.
The Obs inside a structure have to be defined on the same ensemble.</li>
<li><strong>fname</strong> (str):
Filename of the output file.</li>
<li><strong>name</strong> (str):
The name of the observable.</li>
<li><strong>spec</strong> (str):
Optional string that describes the contents of the file.</li>
<li><strong>origin</strong> (str):
Specify where the data has its origin.</li>
<li><strong>symbol</strong> (list):
A list of symbols that describe the observables to be written. May be empty.</li>
<li><strong>enstag</strong> (str):
Enstag that is written to pobs. If None, the ensemble name is used.</li>
<li><strong>gz</strong> (bool):
If True, the output is a gzipped xml. If False, the output is an xml file.</li>
</ul>
<h6 id="returns">Returns</h6>
<ul>
<li><strong>None</strong></li>
</ul>
</div>
</section>
<section id="read_pobs">
<input id="read_pobs-view-source" class="view-source-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<div class="attr function">
<span class="def">def</span>
<span class="name">read_pobs</span><span class="signature pdoc-code condensed">(<span class="param"><span class="n">fname</span>, </span><span class="param"><span class="n">full_output</span><span class="o">=</span><span class="kc">False</span>, </span><span class="param"><span class="n">gz</span><span class="o">=</span><span class="kc">True</span>, </span><span class="param"><span class="n">separator_insertion</span><span class="o">=</span><span class="kc">None</span></span><span class="return-annotation">):</span></span>
<label class="view-source-button" for="read_pobs-view-source"><span>View Source</span></label>
</div>
<a class="headerlink" href="#read_pobs"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="read_pobs-301"><a href="#read_pobs-301"><span class="linenos">301</span></a><span class="k">def</span> <span class="nf">read_pobs</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
</span><span id="read_pobs-302"><a href="#read_pobs-302"><span class="linenos">302</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Import a list of Obs from an xml.gz file in the Zeuthen pobs format.</span>
</span><span id="read_pobs-303"><a href="#read_pobs-303"><span class="linenos">303</span></a>
</span><span id="read_pobs-304"><a href="#read_pobs-304"><span class="linenos">304</span></a><span class="sd"> Tags are not written or recovered automatically.</span>
</span><span id="read_pobs-305"><a href="#read_pobs-305"><span class="linenos">305</span></a>
</span><span id="read_pobs-306"><a href="#read_pobs-306"><span class="linenos">306</span></a><span class="sd"> Parameters</span>
</span><span id="read_pobs-307"><a href="#read_pobs-307"><span class="linenos">307</span></a><span class="sd"> ----------</span>
</span><span id="read_pobs-308"><a href="#read_pobs-308"><span class="linenos">308</span></a><span class="sd"> fname : str</span>
</span><span id="read_pobs-309"><a href="#read_pobs-309"><span class="linenos">309</span></a><span class="sd"> Filename of the input file.</span>
</span><span id="read_pobs-310"><a href="#read_pobs-310"><span class="linenos">310</span></a><span class="sd"> full_output : bool</span>
</span><span id="read_pobs-311"><a href="#read_pobs-311"><span class="linenos">311</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
</span><span id="read_pobs-312"><a href="#read_pobs-312"><span class="linenos">312</span></a><span class="sd"> If False, only the data is returned as list.</span>
</span><span id="read_pobs-313"><a href="#read_pobs-313"><span class="linenos">313</span></a><span class="sd"> separatior_insertion: str or int</span>
</span><span id="read_pobs-314"><a href="#read_pobs-314"><span class="linenos">314</span></a><span class="sd"> str: replace all occurences of &quot;separator_insertion&quot; within the replica names</span>
</span><span id="read_pobs-315"><a href="#read_pobs-315"><span class="linenos">315</span></a><span class="sd"> by &quot;|%s&quot; % (separator_insertion) when constructing the names of the replica.</span>
</span><span id="read_pobs-316"><a href="#read_pobs-316"><span class="linenos">316</span></a><span class="sd"> int: Insert the separator &quot;|&quot; at the position given by separator_insertion.</span>
</span><span id="read_pobs-317"><a href="#read_pobs-317"><span class="linenos">317</span></a><span class="sd"> None (default): Replica names remain unchanged.</span>
</span><span id="read_pobs-318"><a href="#read_pobs-318"><span class="linenos">318</span></a>
</span><span id="read_pobs-319"><a href="#read_pobs-319"><span class="linenos">319</span></a><span class="sd"> Returns</span>
</span><span id="read_pobs-320"><a href="#read_pobs-320"><span class="linenos">320</span></a><span class="sd"> -------</span>
</span><span id="read_pobs-321"><a href="#read_pobs-321"><span class="linenos">321</span></a><span class="sd"> res : list[Obs]</span>
</span><span id="read_pobs-322"><a href="#read_pobs-322"><span class="linenos">322</span></a><span class="sd"> Imported data</span>
</span><span id="read_pobs-323"><a href="#read_pobs-323"><span class="linenos">323</span></a><span class="sd"> or</span>
</span><span id="read_pobs-324"><a href="#read_pobs-324"><span class="linenos">324</span></a><span class="sd"> res : dict</span>
</span><span id="read_pobs-325"><a href="#read_pobs-325"><span class="linenos">325</span></a><span class="sd"> Imported data and meta-data</span>
</span><span id="read_pobs-326"><a href="#read_pobs-326"><span class="linenos">326</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="read_pobs-327"><a href="#read_pobs-327"><span class="linenos">327</span></a>
</span><span id="read_pobs-328"><a href="#read_pobs-328"><span class="linenos">328</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="read_pobs-329"><a href="#read_pobs-329"><span class="linenos">329</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="read_pobs-330"><a href="#read_pobs-330"><span class="linenos">330</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="read_pobs-331"><a href="#read_pobs-331"><span class="linenos">331</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="read_pobs-332"><a href="#read_pobs-332"><span class="linenos">332</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="read_pobs-333"><a href="#read_pobs-333"><span class="linenos">333</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="read_pobs-334"><a href="#read_pobs-334"><span class="linenos">334</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="read_pobs-335"><a href="#read_pobs-335"><span class="linenos">335</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="read_pobs-336"><a href="#read_pobs-336"><span class="linenos">336</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="read_pobs-337"><a href="#read_pobs-337"><span class="linenos">337</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
</span><span id="read_pobs-338"><a href="#read_pobs-338"><span class="linenos">338</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="read_pobs-339"><a href="#read_pobs-339"><span class="linenos">339</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="read_pobs-340"><a href="#read_pobs-340"><span class="linenos">340</span></a>
</span><span id="read_pobs-341"><a href="#read_pobs-341"><span class="linenos">341</span></a> <span class="c1"># parse xml file content</span>
</span><span id="read_pobs-342"><a href="#read_pobs-342"><span class="linenos">342</span></a> <span class="n">root</span> <span class="o">=</span> <span class="n">et</span><span class="o">.</span><span class="n">fromstring</span><span class="p">(</span><span class="n">content</span><span class="p">)</span>
</span><span id="read_pobs-343"><a href="#read_pobs-343"><span class="linenos">343</span></a>
</span><span id="read_pobs-344"><a href="#read_pobs-344"><span class="linenos">344</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;pobs&#39;</span><span class="p">)</span>
</span><span id="read_pobs-345"><a href="#read_pobs-345"><span class="linenos">345</span></a> <span class="n">pobs</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
</span><span id="read_pobs-346"><a href="#read_pobs-346"><span class="linenos">346</span></a>
</span><span id="read_pobs-347"><a href="#read_pobs-347"><span class="linenos">347</span></a> <span class="n">version</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="read_pobs-348"><a href="#read_pobs-348"><span class="linenos">348</span></a>
</span><span id="read_pobs-349"><a href="#read_pobs-349"><span class="linenos">349</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;origin&#39;</span><span class="p">)</span>
</span><span id="read_pobs-350"><a href="#read_pobs-350"><span class="linenos">350</span></a> <span class="n">file_origin</span> <span class="o">=</span> <span class="n">_etree_to_dict</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">])[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span>
</span><span id="read_pobs-351"><a href="#read_pobs-351"><span class="linenos">351</span></a>
</span><span id="read_pobs-352"><a href="#read_pobs-352"><span class="linenos">352</span></a> <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="read_pobs-353"><a href="#read_pobs-353"><span class="linenos">353</span></a> <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="read_pobs-354"><a href="#read_pobs-354"><span class="linenos">354</span></a> <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="read_pobs-355"><a href="#read_pobs-355"><span class="linenos">355</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">pobs</span><span class="p">)):</span>
</span><span id="read_pobs-356"><a href="#read_pobs-356"><span class="linenos">356</span></a> <span class="n">delta</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_import_rdata</span><span class="p">(</span><span class="n">pobs</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
</span><span id="read_pobs-357"><a href="#read_pobs-357"><span class="linenos">357</span></a> <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">delta</span><span class="p">)</span>
</span><span id="read_pobs-358"><a href="#read_pobs-358"><span class="linenos">358</span></a> <span class="k">if</span> <span class="n">separator_insertion</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="read_pobs-359"><a href="#read_pobs-359"><span class="linenos">359</span></a> <span class="k">pass</span>
</span><span id="read_pobs-360"><a href="#read_pobs-360"><span class="linenos">360</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
</span><span id="read_pobs-361"><a href="#read_pobs-361"><span class="linenos">361</span></a> <span class="n">name</span> <span class="o">=</span> <span class="n">name</span><span class="p">[:</span><span class="n">separator_insertion</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">[</span><span class="n">separator_insertion</span><span class="p">:]</span>
</span><span id="read_pobs-362"><a href="#read_pobs-362"><span class="linenos">362</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="read_pobs-363"><a href="#read_pobs-363"><span class="linenos">363</span></a> <span class="n">name</span> <span class="o">=</span> <span class="n">name</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="s2">&quot;|</span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="read_pobs-364"><a href="#read_pobs-364"><span class="linenos">364</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="read_pobs-365"><a href="#read_pobs-365"><span class="linenos">365</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;separator_insertion has to be string or int, is &quot;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="read_pobs-366"><a href="#read_pobs-366"><span class="linenos">366</span></a> <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
</span><span id="read_pobs-367"><a href="#read_pobs-367"><span class="linenos">367</span></a> <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
</span><span id="read_pobs-368"><a href="#read_pobs-368"><span class="linenos">368</span></a> <span class="n">res</span> <span class="o">=</span> <span class="p">[</span><span class="n">Obs</span><span class="p">([</span><span class="n">d</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">deltas</span><span class="p">],</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="mi">0</span><span class="p">]))]</span>
</span><span id="read_pobs-369"><a href="#read_pobs-369"><span class="linenos">369</span></a>
</span><span id="read_pobs-370"><a href="#read_pobs-370"><span class="linenos">370</span></a> <span class="n">descriptiond</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="read_pobs-371"><a href="#read_pobs-371"><span class="linenos">371</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
</span><span id="read_pobs-372"><a href="#read_pobs-372"><span class="linenos">372</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="n">pobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span> <span class="o">=</span> <span class="n">pobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="read_pobs-373"><a href="#read_pobs-373"><span class="linenos">373</span></a>
</span><span id="read_pobs-374"><a href="#read_pobs-374"><span class="linenos">374</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">pobs</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;nr&quot;</span><span class="p">)</span>
</span><span id="read_pobs-375"><a href="#read_pobs-375"><span class="linenos">375</span></a>
</span><span id="read_pobs-376"><a href="#read_pobs-376"><span class="linenos">376</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">pobs</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;array&#39;</span><span class="p">)</span>
</span><span id="read_pobs-377"><a href="#read_pobs-377"><span class="linenos">377</span></a> <span class="k">if</span> <span class="n">pobs</span><span class="p">[</span><span class="mi">5</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;symbol&#39;</span><span class="p">:</span>
</span><span id="read_pobs-378"><a href="#read_pobs-378"><span class="linenos">378</span></a> <span class="n">symbol</span> <span class="o">=</span> <span class="n">pobs</span><span class="p">[</span><span class="mi">5</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="read_pobs-379"><a href="#read_pobs-379"><span class="linenos">379</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">symbol</span>
</span><span id="read_pobs-380"><a href="#read_pobs-380"><span class="linenos">380</span></a>
</span><span id="read_pobs-381"><a href="#read_pobs-381"><span class="linenos">381</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
</span><span id="read_pobs-382"><a href="#read_pobs-382"><span class="linenos">382</span></a> <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="read_pobs-383"><a href="#read_pobs-383"><span class="linenos">383</span></a> <span class="n">tool</span> <span class="o">=</span> <span class="n">file_origin</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tool&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
</span><span id="read_pobs-384"><a href="#read_pobs-384"><span class="linenos">384</span></a> <span class="k">if</span> <span class="n">tool</span><span class="p">:</span>
</span><span id="read_pobs-385"><a href="#read_pobs-385"><span class="linenos">385</span></a> <span class="n">program</span> <span class="o">=</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">+</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span>
</span><span id="read_pobs-386"><a href="#read_pobs-386"><span class="linenos">386</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="read_pobs-387"><a href="#read_pobs-387"><span class="linenos">387</span></a> <span class="n">program</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="read_pobs-388"><a href="#read_pobs-388"><span class="linenos">388</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">program</span>
</span><span id="read_pobs-389"><a href="#read_pobs-389"><span class="linenos">389</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">version</span>
</span><span id="read_pobs-390"><a href="#read_pobs-390"><span class="linenos">390</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span>
</span><span id="read_pobs-391"><a href="#read_pobs-391"><span class="linenos">391</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span>
</span><span id="read_pobs-392"><a href="#read_pobs-392"><span class="linenos">392</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span>
</span><span id="read_pobs-393"><a href="#read_pobs-393"><span class="linenos">393</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">descriptiond</span>
</span><span id="read_pobs-394"><a href="#read_pobs-394"><span class="linenos">394</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span>
</span><span id="read_pobs-395"><a href="#read_pobs-395"><span class="linenos">395</span></a> <span class="k">return</span> <span class="n">retd</span>
</span><span id="read_pobs-396"><a href="#read_pobs-396"><span class="linenos">396</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="read_pobs-397"><a href="#read_pobs-397"><span class="linenos">397</span></a> <span class="k">return</span> <span class="n">res</span>
</span></pre></div>
<div class="docstring"><p>Import a list of Obs from an xml.gz file in the Zeuthen pobs format.</p>
<p>Tags are not written or recovered automatically.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>fname</strong> (str):
Filename of the input file.</li>
<li><strong>full_output</strong> (bool):
If True, a dict containing auxiliary information and the data is returned.
If False, only the data is returned as list.</li>
<li><strong>separatior_insertion</strong> (str or int):
str: replace all occurences of "separator_insertion" within the replica names
by "|%s" % (separator_insertion) when constructing the names of the replica.
int: Insert the separator "|" at the position given by separator_insertion.
None (default): Replica names remain unchanged.</li>
</ul>
<h6 id="returns">Returns</h6>
<ul>
<li><strong>res</strong> (list[Obs]):
Imported data</li>
<li><strong>or</strong></li>
<li><strong>res</strong> (dict):
Imported data and meta-data</li>
</ul>
</div>
</section>
<section id="import_dobs_string">
<input id="import_dobs_string-view-source" class="view-source-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<div class="attr function">
<span class="def">def</span>
<span class="name">import_dobs_string</span><span class="signature pdoc-code condensed">(<span class="param"><span class="n">content</span>, </span><span class="param"><span class="n">full_output</span><span class="o">=</span><span class="kc">False</span>, </span><span class="param"><span class="n">separator_insertion</span><span class="o">=</span><span class="kc">True</span></span><span class="return-annotation">):</span></span>
<label class="view-source-button" for="import_dobs_string-view-source"><span>View Source</span></label>
</div>
<a class="headerlink" href="#import_dobs_string"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="import_dobs_string-401"><a href="#import_dobs_string-401"><span class="linenos">401</span></a><span class="k">def</span> <span class="nf">import_dobs_string</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="import_dobs_string-402"><a href="#import_dobs_string-402"><span class="linenos">402</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Import a list of Obs from a string in the Zeuthen dobs format.</span>
</span><span id="import_dobs_string-403"><a href="#import_dobs_string-403"><span class="linenos">403</span></a>
</span><span id="import_dobs_string-404"><a href="#import_dobs_string-404"><span class="linenos">404</span></a><span class="sd"> Tags are not written or recovered automatically.</span>
</span><span id="import_dobs_string-405"><a href="#import_dobs_string-405"><span class="linenos">405</span></a>
</span><span id="import_dobs_string-406"><a href="#import_dobs_string-406"><span class="linenos">406</span></a><span class="sd"> Parameters</span>
</span><span id="import_dobs_string-407"><a href="#import_dobs_string-407"><span class="linenos">407</span></a><span class="sd"> ----------</span>
</span><span id="import_dobs_string-408"><a href="#import_dobs_string-408"><span class="linenos">408</span></a><span class="sd"> content : str</span>
</span><span id="import_dobs_string-409"><a href="#import_dobs_string-409"><span class="linenos">409</span></a><span class="sd"> XML string containing the data</span>
</span><span id="import_dobs_string-410"><a href="#import_dobs_string-410"><span class="linenos">410</span></a><span class="sd"> full_output : bool</span>
</span><span id="import_dobs_string-411"><a href="#import_dobs_string-411"><span class="linenos">411</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
</span><span id="import_dobs_string-412"><a href="#import_dobs_string-412"><span class="linenos">412</span></a><span class="sd"> If False, only the data is returned as list.</span>
</span><span id="import_dobs_string-413"><a href="#import_dobs_string-413"><span class="linenos">413</span></a><span class="sd"> separatior_insertion: str, int or bool</span>
</span><span id="import_dobs_string-414"><a href="#import_dobs_string-414"><span class="linenos">414</span></a><span class="sd"> str: replace all occurences of &quot;separator_insertion&quot; within the replica names</span>
</span><span id="import_dobs_string-415"><a href="#import_dobs_string-415"><span class="linenos">415</span></a><span class="sd"> by &quot;|%s&quot; % (separator_insertion) when constructing the names of the replica.</span>
</span><span id="import_dobs_string-416"><a href="#import_dobs_string-416"><span class="linenos">416</span></a><span class="sd"> int: Insert the separator &quot;|&quot; at the position given by separator_insertion.</span>
</span><span id="import_dobs_string-417"><a href="#import_dobs_string-417"><span class="linenos">417</span></a><span class="sd"> True (default): separator &quot;|&quot; is inserted after len(ensname), assuming that the</span>
</span><span id="import_dobs_string-418"><a href="#import_dobs_string-418"><span class="linenos">418</span></a><span class="sd"> ensemble name is a prefix to the replica name.</span>
</span><span id="import_dobs_string-419"><a href="#import_dobs_string-419"><span class="linenos">419</span></a><span class="sd"> None or False: No separator is inserted.</span>
</span><span id="import_dobs_string-420"><a href="#import_dobs_string-420"><span class="linenos">420</span></a>
</span><span id="import_dobs_string-421"><a href="#import_dobs_string-421"><span class="linenos">421</span></a><span class="sd"> Returns</span>
</span><span id="import_dobs_string-422"><a href="#import_dobs_string-422"><span class="linenos">422</span></a><span class="sd"> -------</span>
</span><span id="import_dobs_string-423"><a href="#import_dobs_string-423"><span class="linenos">423</span></a><span class="sd"> res : list[Obs]</span>
</span><span id="import_dobs_string-424"><a href="#import_dobs_string-424"><span class="linenos">424</span></a><span class="sd"> Imported data</span>
</span><span id="import_dobs_string-425"><a href="#import_dobs_string-425"><span class="linenos">425</span></a><span class="sd"> or</span>
</span><span id="import_dobs_string-426"><a href="#import_dobs_string-426"><span class="linenos">426</span></a><span class="sd"> res : dict</span>
</span><span id="import_dobs_string-427"><a href="#import_dobs_string-427"><span class="linenos">427</span></a><span class="sd"> Imported data and meta-data</span>
</span><span id="import_dobs_string-428"><a href="#import_dobs_string-428"><span class="linenos">428</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="import_dobs_string-429"><a href="#import_dobs_string-429"><span class="linenos">429</span></a>
</span><span id="import_dobs_string-430"><a href="#import_dobs_string-430"><span class="linenos">430</span></a> <span class="n">root</span> <span class="o">=</span> <span class="n">et</span><span class="o">.</span><span class="n">fromstring</span><span class="p">(</span><span class="n">content</span><span class="p">)</span>
</span><span id="import_dobs_string-431"><a href="#import_dobs_string-431"><span class="linenos">431</span></a>
</span><span id="import_dobs_string-432"><a href="#import_dobs_string-432"><span class="linenos">432</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">)</span>
</span><span id="import_dobs_string-433"><a href="#import_dobs_string-433"><span class="linenos">433</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;SCHEMA&#39;</span><span class="p">)</span>
</span><span id="import_dobs_string-434"><a href="#import_dobs_string-434"><span class="linenos">434</span></a> <span class="n">version</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="import_dobs_string-435"><a href="#import_dobs_string-435"><span class="linenos">435</span></a>
</span><span id="import_dobs_string-436"><a href="#import_dobs_string-436"><span class="linenos">436</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;origin&#39;</span><span class="p">)</span>
</span><span id="import_dobs_string-437"><a href="#import_dobs_string-437"><span class="linenos">437</span></a> <span class="n">file_origin</span> <span class="o">=</span> <span class="n">_etree_to_dict</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">1</span><span class="p">])[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span>
</span><span id="import_dobs_string-438"><a href="#import_dobs_string-438"><span class="linenos">438</span></a>
</span><span id="import_dobs_string-439"><a href="#import_dobs_string-439"><span class="linenos">439</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;dobs&#39;</span><span class="p">)</span>
</span><span id="import_dobs_string-440"><a href="#import_dobs_string-440"><span class="linenos">440</span></a>
</span><span id="import_dobs_string-441"><a href="#import_dobs_string-441"><span class="linenos">441</span></a> <span class="n">dobs</span> <span class="o">=</span> <span class="n">root</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
</span><span id="import_dobs_string-442"><a href="#import_dobs_string-442"><span class="linenos">442</span></a>
</span><span id="import_dobs_string-443"><a href="#import_dobs_string-443"><span class="linenos">443</span></a> <span class="n">descriptiond</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="import_dobs_string-444"><a href="#import_dobs_string-444"><span class="linenos">444</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">3</span><span class="p">):</span>
</span><span id="import_dobs_string-445"><a href="#import_dobs_string-445"><span class="linenos">445</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="n">dobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span> <span class="o">=</span> <span class="n">dobs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="import_dobs_string-446"><a href="#import_dobs_string-446"><span class="linenos">446</span></a>
</span><span id="import_dobs_string-447"><a href="#import_dobs_string-447"><span class="linenos">447</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;array&#39;</span><span class="p">)</span>
</span><span id="import_dobs_string-448"><a href="#import_dobs_string-448"><span class="linenos">448</span></a>
</span><span id="import_dobs_string-449"><a href="#import_dobs_string-449"><span class="linenos">449</span></a> <span class="n">symbol</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-450"><a href="#import_dobs_string-450"><span class="linenos">450</span></a> <span class="k">if</span> <span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;symbol&#39;</span><span class="p">:</span>
</span><span id="import_dobs_string-451"><a href="#import_dobs_string-451"><span class="linenos">451</span></a> <span class="n">symbol</span> <span class="o">=</span> <span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="import_dobs_string-452"><a href="#import_dobs_string-452"><span class="linenos">452</span></a> <span class="n">descriptiond</span><span class="p">[</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">symbol</span>
</span><span id="import_dobs_string-453"><a href="#import_dobs_string-453"><span class="linenos">453</span></a> <span class="n">mean</span> <span class="o">=</span> <span class="n">_import_array</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">3</span><span class="p">])[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="import_dobs_string-454"><a href="#import_dobs_string-454"><span class="linenos">454</span></a>
</span><span id="import_dobs_string-455"><a href="#import_dobs_string-455"><span class="linenos">455</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;ne&quot;</span><span class="p">)</span>
</span><span id="import_dobs_string-456"><a href="#import_dobs_string-456"><span class="linenos">456</span></a> <span class="n">ne</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
</span><span id="import_dobs_string-457"><a href="#import_dobs_string-457"><span class="linenos">457</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;nc&quot;</span><span class="p">)</span>
</span><span id="import_dobs_string-458"><a href="#import_dobs_string-458"><span class="linenos">458</span></a>
</span><span id="import_dobs_string-459"><a href="#import_dobs_string-459"><span class="linenos">459</span></a> <span class="n">idld</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="import_dobs_string-460"><a href="#import_dobs_string-460"><span class="linenos">460</span></a> <span class="n">deltad</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="import_dobs_string-461"><a href="#import_dobs_string-461"><span class="linenos">461</span></a> <span class="n">covd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="import_dobs_string-462"><a href="#import_dobs_string-462"><span class="linenos">462</span></a> <span class="n">gradd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="import_dobs_string-463"><a href="#import_dobs_string-463"><span class="linenos">463</span></a> <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-464"><a href="#import_dobs_string-464"><span class="linenos">464</span></a> <span class="n">e_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-465"><a href="#import_dobs_string-465"><span class="linenos">465</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="import_dobs_string-466"><a href="#import_dobs_string-466"><span class="linenos">466</span></a> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">6</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">dobs</span><span class="p">))):</span>
</span><span id="import_dobs_string-467"><a href="#import_dobs_string-467"><span class="linenos">467</span></a> <span class="k">if</span> <span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;edata&quot;</span><span class="p">:</span>
</span><span id="import_dobs_string-468"><a href="#import_dobs_string-468"><span class="linenos">468</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;enstag&quot;</span><span class="p">)</span>
</span><span id="import_dobs_string-469"><a href="#import_dobs_string-469"><span class="linenos">469</span></a> <span class="n">ename</span> <span class="o">=</span> <span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
</span><span id="import_dobs_string-470"><a href="#import_dobs_string-470"><span class="linenos">470</span></a> <span class="n">e_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ename</span><span class="p">)</span>
</span><span id="import_dobs_string-471"><a href="#import_dobs_string-471"><span class="linenos">471</span></a> <span class="n">_check</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;nr&quot;</span><span class="p">)</span>
</span><span id="import_dobs_string-472"><a href="#import_dobs_string-472"><span class="linenos">472</span></a> <span class="n">R</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">text</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span>
</span><span id="import_dobs_string-473"><a href="#import_dobs_string-473"><span class="linenos">473</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">R</span><span class="p">):</span>
</span><span id="import_dobs_string-474"><a href="#import_dobs_string-474"><span class="linenos">474</span></a> <span class="n">deltas</span><span class="p">,</span> <span class="n">rname</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_import_rdata</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="import_dobs_string-475"><a href="#import_dobs_string-475"><span class="linenos">475</span></a> <span class="k">if</span> <span class="n">separator_insertion</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="kc">False</span><span class="p">:</span>
</span><span id="import_dobs_string-476"><a href="#import_dobs_string-476"><span class="linenos">476</span></a> <span class="k">pass</span>
</span><span id="import_dobs_string-477"><a href="#import_dobs_string-477"><span class="linenos">477</span></a> <span class="k">elif</span> <span class="n">separator_insertion</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
</span><span id="import_dobs_string-478"><a href="#import_dobs_string-478"><span class="linenos">478</span></a> <span class="k">if</span> <span class="n">rname</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">ename</span><span class="p">):</span>
</span><span id="import_dobs_string-479"><a href="#import_dobs_string-479"><span class="linenos">479</span></a> <span class="n">rname</span> <span class="o">=</span> <span class="n">rname</span><span class="p">[:</span><span class="nb">len</span><span class="p">(</span><span class="n">ename</span><span class="p">)]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">rname</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">ename</span><span class="p">):]</span>
</span><span id="import_dobs_string-480"><a href="#import_dobs_string-480"><span class="linenos">480</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
</span><span id="import_dobs_string-481"><a href="#import_dobs_string-481"><span class="linenos">481</span></a> <span class="n">rname</span> <span class="o">=</span> <span class="n">rname</span><span class="p">[:</span><span class="n">separator_insertion</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">rname</span><span class="p">[</span><span class="n">separator_insertion</span><span class="p">:]</span>
</span><span id="import_dobs_string-482"><a href="#import_dobs_string-482"><span class="linenos">482</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
</span><span id="import_dobs_string-483"><a href="#import_dobs_string-483"><span class="linenos">483</span></a> <span class="n">rname</span> <span class="o">=</span> <span class="n">rname</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">,</span> <span class="s2">&quot;|</span><span class="si">%s</span><span class="s2">&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="import_dobs_string-484"><a href="#import_dobs_string-484"><span class="linenos">484</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="import_dobs_string-485"><a href="#import_dobs_string-485"><span class="linenos">485</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;separator_insertion has to be string or int, is &quot;</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="n">separator_insertion</span><span class="p">))</span>
</span><span id="import_dobs_string-486"><a href="#import_dobs_string-486"><span class="linenos">486</span></a> <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">rname</span><span class="p">:</span>
</span><span id="import_dobs_string-487"><a href="#import_dobs_string-487"><span class="linenos">487</span></a> <span class="n">new_ename</span> <span class="o">=</span> <span class="n">rname</span><span class="p">[:</span><span class="n">rname</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)]</span>
</span><span id="import_dobs_string-488"><a href="#import_dobs_string-488"><span class="linenos">488</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="import_dobs_string-489"><a href="#import_dobs_string-489"><span class="linenos">489</span></a> <span class="n">new_ename</span> <span class="o">=</span> <span class="n">ename</span>
</span><span id="import_dobs_string-490"><a href="#import_dobs_string-490"><span class="linenos">490</span></a> <span class="n">enstags</span><span class="p">[</span><span class="n">new_ename</span><span class="p">]</span> <span class="o">=</span> <span class="n">ename</span>
</span><span id="import_dobs_string-491"><a href="#import_dobs_string-491"><span class="linenos">491</span></a> <span class="n">idld</span><span class="p">[</span><span class="n">rname</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
</span><span id="import_dobs_string-492"><a href="#import_dobs_string-492"><span class="linenos">492</span></a> <span class="n">deltad</span><span class="p">[</span><span class="n">rname</span><span class="p">]</span> <span class="o">=</span> <span class="n">deltas</span>
</span><span id="import_dobs_string-493"><a href="#import_dobs_string-493"><span class="linenos">493</span></a> <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rname</span><span class="p">)</span>
</span><span id="import_dobs_string-494"><a href="#import_dobs_string-494"><span class="linenos">494</span></a> <span class="k">elif</span> <span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s2">&quot;cdata&quot;</span><span class="p">:</span>
</span><span id="import_dobs_string-495"><a href="#import_dobs_string-495"><span class="linenos">495</span></a> <span class="n">cname</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">grad</span> <span class="o">=</span> <span class="n">_import_cdata</span><span class="p">(</span><span class="n">dobs</span><span class="p">[</span><span class="n">k</span><span class="p">])</span>
</span><span id="import_dobs_string-496"><a href="#import_dobs_string-496"><span class="linenos">496</span></a> <span class="n">covd</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="n">cov</span>
</span><span id="import_dobs_string-497"><a href="#import_dobs_string-497"><span class="linenos">497</span></a> <span class="k">if</span> <span class="n">grad</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
</span><span id="import_dobs_string-498"><a href="#import_dobs_string-498"><span class="linenos">498</span></a> <span class="n">gradd</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">grad</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">mean</span><span class="p">))]</span>
</span><span id="import_dobs_string-499"><a href="#import_dobs_string-499"><span class="linenos">499</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="import_dobs_string-500"><a href="#import_dobs_string-500"><span class="linenos">500</span></a> <span class="n">gradd</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="n">grad</span><span class="o">.</span><span class="n">T</span>
</span><span id="import_dobs_string-501"><a href="#import_dobs_string-501"><span class="linenos">501</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="import_dobs_string-502"><a href="#import_dobs_string-502"><span class="linenos">502</span></a> <span class="n">_check</span><span class="p">(</span><span class="kc">False</span><span class="p">)</span>
</span><span id="import_dobs_string-503"><a href="#import_dobs_string-503"><span class="linenos">503</span></a> <span class="n">names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">))</span>
</span><span id="import_dobs_string-504"><a href="#import_dobs_string-504"><span class="linenos">504</span></a>
</span><span id="import_dobs_string-505"><a href="#import_dobs_string-505"><span class="linenos">505</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">:</span>
</span><span id="import_dobs_string-506"><a href="#import_dobs_string-506"><span class="linenos">506</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">])):</span>
</span><span id="import_dobs_string-507"><a href="#import_dobs_string-507"><span class="linenos">507</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="import_dobs_string-508"><a href="#import_dobs_string-508"><span class="linenos">508</span></a> <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])):</span>
</span><span id="import_dobs_string-509"><a href="#import_dobs_string-509"><span class="linenos">509</span></a> <span class="k">if</span> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">!=</span> <span class="mf">0.</span><span class="p">:</span>
</span><span id="import_dobs_string-510"><a href="#import_dobs_string-510"><span class="linenos">510</span></a> <span class="n">tmp</span><span class="p">[</span><span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">+</span> <span class="n">mean</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
</span><span id="import_dobs_string-511"><a href="#import_dobs_string-511"><span class="linenos">511</span></a> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
</span><span id="import_dobs_string-512"><a href="#import_dobs_string-512"><span class="linenos">512</span></a>
</span><span id="import_dobs_string-513"><a href="#import_dobs_string-513"><span class="linenos">513</span></a> <span class="n">res</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-514"><a href="#import_dobs_string-514"><span class="linenos">514</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">mean</span><span class="p">)):</span>
</span><span id="import_dobs_string-515"><a href="#import_dobs_string-515"><span class="linenos">515</span></a> <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-516"><a href="#import_dobs_string-516"><span class="linenos">516</span></a> <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-517"><a href="#import_dobs_string-517"><span class="linenos">517</span></a> <span class="n">obs_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-518"><a href="#import_dobs_string-518"><span class="linenos">518</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">:</span>
</span><span id="import_dobs_string-519"><a href="#import_dobs_string-519"><span class="linenos">519</span></a> <span class="n">h</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
</span><span id="import_dobs_string-520"><a href="#import_dobs_string-520"><span class="linenos">520</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">h</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">h</span> <span class="o">==</span> <span class="n">mean</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
</span><span id="import_dobs_string-521"><a href="#import_dobs_string-521"><span class="linenos">521</span></a> <span class="k">continue</span>
</span><span id="import_dobs_string-522"><a href="#import_dobs_string-522"><span class="linenos">522</span></a> <span class="n">repdeltas</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-523"><a href="#import_dobs_string-523"><span class="linenos">523</span></a> <span class="n">repidl</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-524"><a href="#import_dobs_string-524"><span class="linenos">524</span></a> <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])):</span>
</span><span id="import_dobs_string-525"><a href="#import_dobs_string-525"><span class="linenos">525</span></a> <span class="k">if</span> <span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">!=</span> <span class="mf">0.</span><span class="p">:</span>
</span><span id="import_dobs_string-526"><a href="#import_dobs_string-526"><span class="linenos">526</span></a> <span class="n">repdeltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">deltad</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">])</span>
</span><span id="import_dobs_string-527"><a href="#import_dobs_string-527"><span class="linenos">527</span></a> <span class="n">repidl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">idld</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">j</span><span class="p">])</span>
</span><span id="import_dobs_string-528"><a href="#import_dobs_string-528"><span class="linenos">528</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">repdeltas</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="import_dobs_string-529"><a href="#import_dobs_string-529"><span class="linenos">529</span></a> <span class="n">obs_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
</span><span id="import_dobs_string-530"><a href="#import_dobs_string-530"><span class="linenos">530</span></a> <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">repdeltas</span><span class="p">)</span>
</span><span id="import_dobs_string-531"><a href="#import_dobs_string-531"><span class="linenos">531</span></a> <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">repidl</span><span class="p">)</span>
</span><span id="import_dobs_string-532"><a href="#import_dobs_string-532"><span class="linenos">532</span></a>
</span><span id="import_dobs_string-533"><a href="#import_dobs_string-533"><span class="linenos">533</span></a> <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">obs_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
</span><span id="import_dobs_string-534"><a href="#import_dobs_string-534"><span class="linenos">534</span></a> <span class="n">res</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">mean</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
</span><span id="import_dobs_string-535"><a href="#import_dobs_string-535"><span class="linenos">535</span></a> <span class="n">_check</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="n">ne</span><span class="p">)</span>
</span><span id="import_dobs_string-536"><a href="#import_dobs_string-536"><span class="linenos">536</span></a>
</span><span id="import_dobs_string-537"><a href="#import_dobs_string-537"><span class="linenos">537</span></a> <span class="n">cnames</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">covd</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
</span><span id="import_dobs_string-538"><a href="#import_dobs_string-538"><span class="linenos">538</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">)):</span>
</span><span id="import_dobs_string-539"><a href="#import_dobs_string-539"><span class="linenos">539</span></a> <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">covd</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">gradd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cnames</span><span class="p">}</span>
</span><span id="import_dobs_string-540"><a href="#import_dobs_string-540"><span class="linenos">540</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cnames</span><span class="p">:</span>
</span><span id="import_dobs_string-541"><a href="#import_dobs_string-541"><span class="linenos">541</span></a> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">new_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
</span><span id="import_dobs_string-542"><a href="#import_dobs_string-542"><span class="linenos">542</span></a> <span class="k">del</span> <span class="n">new_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
</span><span id="import_dobs_string-543"><a href="#import_dobs_string-543"><span class="linenos">543</span></a> <span class="n">cnames_loc</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
</span><span id="import_dobs_string-544"><a href="#import_dobs_string-544"><span class="linenos">544</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cnames_loc</span><span class="p">:</span>
</span><span id="import_dobs_string-545"><a href="#import_dobs_string-545"><span class="linenos">545</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
</span><span id="import_dobs_string-546"><a href="#import_dobs_string-546"><span class="linenos">546</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
</span><span id="import_dobs_string-547"><a href="#import_dobs_string-547"><span class="linenos">547</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="import_dobs_string-548"><a href="#import_dobs_string-548"><span class="linenos">548</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
</span><span id="import_dobs_string-549"><a href="#import_dobs_string-549"><span class="linenos">549</span></a>
</span><span id="import_dobs_string-550"><a href="#import_dobs_string-550"><span class="linenos">550</span></a> <span class="k">if</span> <span class="n">symbol</span><span class="p">:</span>
</span><span id="import_dobs_string-551"><a href="#import_dobs_string-551"><span class="linenos">551</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">res</span><span class="p">)):</span>
</span><span id="import_dobs_string-552"><a href="#import_dobs_string-552"><span class="linenos">552</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">symbol</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
</span><span id="import_dobs_string-553"><a href="#import_dobs_string-553"><span class="linenos">553</span></a> <span class="k">if</span> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">==</span> <span class="s1">&#39;None&#39;</span><span class="p">:</span>
</span><span id="import_dobs_string-554"><a href="#import_dobs_string-554"><span class="linenos">554</span></a> <span class="n">res</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
</span><span id="import_dobs_string-555"><a href="#import_dobs_string-555"><span class="linenos">555</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
</span><span id="import_dobs_string-556"><a href="#import_dobs_string-556"><span class="linenos">556</span></a> <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="import_dobs_string-557"><a href="#import_dobs_string-557"><span class="linenos">557</span></a> <span class="n">tool</span> <span class="o">=</span> <span class="n">file_origin</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tool&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
</span><span id="import_dobs_string-558"><a href="#import_dobs_string-558"><span class="linenos">558</span></a> <span class="k">if</span> <span class="n">tool</span><span class="p">:</span>
</span><span id="import_dobs_string-559"><a href="#import_dobs_string-559"><span class="linenos">559</span></a> <span class="n">program</span> <span class="o">=</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">+</span> <span class="n">tool</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span>
</span><span id="import_dobs_string-560"><a href="#import_dobs_string-560"><span class="linenos">560</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="import_dobs_string-561"><a href="#import_dobs_string-561"><span class="linenos">561</span></a> <span class="n">program</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="import_dobs_string-562"><a href="#import_dobs_string-562"><span class="linenos">562</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">program</span>
</span><span id="import_dobs_string-563"><a href="#import_dobs_string-563"><span class="linenos">563</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">version</span>
</span><span id="import_dobs_string-564"><a href="#import_dobs_string-564"><span class="linenos">564</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span>
</span><span id="import_dobs_string-565"><a href="#import_dobs_string-565"><span class="linenos">565</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span>
</span><span id="import_dobs_string-566"><a href="#import_dobs_string-566"><span class="linenos">566</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">file_origin</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span>
</span><span id="import_dobs_string-567"><a href="#import_dobs_string-567"><span class="linenos">567</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">descriptiond</span>
</span><span id="import_dobs_string-568"><a href="#import_dobs_string-568"><span class="linenos">568</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;enstags&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">enstags</span>
</span><span id="import_dobs_string-569"><a href="#import_dobs_string-569"><span class="linenos">569</span></a> <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">res</span>
</span><span id="import_dobs_string-570"><a href="#import_dobs_string-570"><span class="linenos">570</span></a> <span class="k">return</span> <span class="n">retd</span>
</span><span id="import_dobs_string-571"><a href="#import_dobs_string-571"><span class="linenos">571</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="import_dobs_string-572"><a href="#import_dobs_string-572"><span class="linenos">572</span></a> <span class="k">return</span> <span class="n">res</span>
</span></pre></div>
<div class="docstring"><p>Import a list of Obs from a string in the Zeuthen dobs format.</p>
<p>Tags are not written or recovered automatically.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>content</strong> (str):
XML string containing the data</li>
<li><strong>full_output</strong> (bool):
If True, a dict containing auxiliary information and the data is returned.
If False, only the data is returned as list.</li>
<li><strong>separatior_insertion</strong> (str, int or bool):
str: replace all occurences of "separator_insertion" within the replica names
by "|%s" % (separator_insertion) when constructing the names of the replica.
int: Insert the separator "|" at the position given by separator_insertion.
True (default): separator "|" is inserted after len(ensname), assuming that the
ensemble name is a prefix to the replica name.
None or False: No separator is inserted.</li>
</ul>
<h6 id="returns">Returns</h6>
<ul>
<li><strong>res</strong> (list[Obs]):
Imported data</li>
<li><strong>or</strong></li>
<li><strong>res</strong> (dict):
Imported data and meta-data</li>
</ul>
</div>
</section>
<section id="read_dobs">
<input id="read_dobs-view-source" class="view-source-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<div class="attr function">
<span class="def">def</span>
<span class="name">read_dobs</span><span class="signature pdoc-code condensed">(<span class="param"><span class="n">fname</span>, </span><span class="param"><span class="n">full_output</span><span class="o">=</span><span class="kc">False</span>, </span><span class="param"><span class="n">gz</span><span class="o">=</span><span class="kc">True</span>, </span><span class="param"><span class="n">separator_insertion</span><span class="o">=</span><span class="kc">True</span></span><span class="return-annotation">):</span></span>
<label class="view-source-button" for="read_dobs-view-source"><span>View Source</span></label>
</div>
<a class="headerlink" href="#read_dobs"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="read_dobs-575"><a href="#read_dobs-575"><span class="linenos">575</span></a><span class="k">def</span> <span class="nf">read_dobs</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="read_dobs-576"><a href="#read_dobs-576"><span class="linenos">576</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Import a list of Obs from an xml.gz file in the Zeuthen dobs format.</span>
</span><span id="read_dobs-577"><a href="#read_dobs-577"><span class="linenos">577</span></a>
</span><span id="read_dobs-578"><a href="#read_dobs-578"><span class="linenos">578</span></a><span class="sd"> Tags are not written or recovered automatically.</span>
</span><span id="read_dobs-579"><a href="#read_dobs-579"><span class="linenos">579</span></a>
</span><span id="read_dobs-580"><a href="#read_dobs-580"><span class="linenos">580</span></a><span class="sd"> Parameters</span>
</span><span id="read_dobs-581"><a href="#read_dobs-581"><span class="linenos">581</span></a><span class="sd"> ----------</span>
</span><span id="read_dobs-582"><a href="#read_dobs-582"><span class="linenos">582</span></a><span class="sd"> fname : str</span>
</span><span id="read_dobs-583"><a href="#read_dobs-583"><span class="linenos">583</span></a><span class="sd"> Filename of the input file.</span>
</span><span id="read_dobs-584"><a href="#read_dobs-584"><span class="linenos">584</span></a><span class="sd"> full_output : bool</span>
</span><span id="read_dobs-585"><a href="#read_dobs-585"><span class="linenos">585</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
</span><span id="read_dobs-586"><a href="#read_dobs-586"><span class="linenos">586</span></a><span class="sd"> If False, only the data is returned as list.</span>
</span><span id="read_dobs-587"><a href="#read_dobs-587"><span class="linenos">587</span></a><span class="sd"> gz : bool</span>
</span><span id="read_dobs-588"><a href="#read_dobs-588"><span class="linenos">588</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes XML file.</span>
</span><span id="read_dobs-589"><a href="#read_dobs-589"><span class="linenos">589</span></a><span class="sd"> separatior_insertion: str, int or bool</span>
</span><span id="read_dobs-590"><a href="#read_dobs-590"><span class="linenos">590</span></a><span class="sd"> str: replace all occurences of &quot;separator_insertion&quot; within the replica names</span>
</span><span id="read_dobs-591"><a href="#read_dobs-591"><span class="linenos">591</span></a><span class="sd"> by &quot;|%s&quot; % (separator_insertion) when constructing the names of the replica.</span>
</span><span id="read_dobs-592"><a href="#read_dobs-592"><span class="linenos">592</span></a><span class="sd"> int: Insert the separator &quot;|&quot; at the position given by separator_insertion.</span>
</span><span id="read_dobs-593"><a href="#read_dobs-593"><span class="linenos">593</span></a><span class="sd"> True (default): separator &quot;|&quot; is inserted after len(ensname), assuming that the</span>
</span><span id="read_dobs-594"><a href="#read_dobs-594"><span class="linenos">594</span></a><span class="sd"> ensemble name is a prefix to the replica name.</span>
</span><span id="read_dobs-595"><a href="#read_dobs-595"><span class="linenos">595</span></a><span class="sd"> None or False: No separator is inserted.</span>
</span><span id="read_dobs-596"><a href="#read_dobs-596"><span class="linenos">596</span></a>
</span><span id="read_dobs-597"><a href="#read_dobs-597"><span class="linenos">597</span></a><span class="sd"> Returns</span>
</span><span id="read_dobs-598"><a href="#read_dobs-598"><span class="linenos">598</span></a><span class="sd"> -------</span>
</span><span id="read_dobs-599"><a href="#read_dobs-599"><span class="linenos">599</span></a><span class="sd"> res : list[Obs]</span>
</span><span id="read_dobs-600"><a href="#read_dobs-600"><span class="linenos">600</span></a><span class="sd"> Imported data</span>
</span><span id="read_dobs-601"><a href="#read_dobs-601"><span class="linenos">601</span></a><span class="sd"> or</span>
</span><span id="read_dobs-602"><a href="#read_dobs-602"><span class="linenos">602</span></a><span class="sd"> res : dict</span>
</span><span id="read_dobs-603"><a href="#read_dobs-603"><span class="linenos">603</span></a><span class="sd"> Imported data and meta-data</span>
</span><span id="read_dobs-604"><a href="#read_dobs-604"><span class="linenos">604</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="read_dobs-605"><a href="#read_dobs-605"><span class="linenos">605</span></a>
</span><span id="read_dobs-606"><a href="#read_dobs-606"><span class="linenos">606</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="read_dobs-607"><a href="#read_dobs-607"><span class="linenos">607</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="read_dobs-608"><a href="#read_dobs-608"><span class="linenos">608</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="read_dobs-609"><a href="#read_dobs-609"><span class="linenos">609</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="read_dobs-610"><a href="#read_dobs-610"><span class="linenos">610</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="read_dobs-611"><a href="#read_dobs-611"><span class="linenos">611</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="read_dobs-612"><a href="#read_dobs-612"><span class="linenos">612</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="read_dobs-613"><a href="#read_dobs-613"><span class="linenos">613</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="read_dobs-614"><a href="#read_dobs-614"><span class="linenos">614</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="read_dobs-615"><a href="#read_dobs-615"><span class="linenos">615</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
</span><span id="read_dobs-616"><a href="#read_dobs-616"><span class="linenos">616</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
</span><span id="read_dobs-617"><a href="#read_dobs-617"><span class="linenos">617</span></a> <span class="n">content</span> <span class="o">=</span> <span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
</span><span id="read_dobs-618"><a href="#read_dobs-618"><span class="linenos">618</span></a>
</span><span id="read_dobs-619"><a href="#read_dobs-619"><span class="linenos">619</span></a> <span class="k">return</span> <span class="n">import_dobs_string</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">full_output</span><span class="p">,</span> <span class="n">separator_insertion</span><span class="o">=</span><span class="n">separator_insertion</span><span class="p">)</span>
</span></pre></div>
<div class="docstring"><p>Import a list of Obs from an xml.gz file in the Zeuthen dobs format.</p>
<p>Tags are not written or recovered automatically.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>fname</strong> (str):
Filename of the input file.</li>
<li><strong>full_output</strong> (bool):
If True, a dict containing auxiliary information and the data is returned.
If False, only the data is returned as list.</li>
<li><strong>gz</strong> (bool):
If True, assumes that data is gzipped. If False, assumes XML file.</li>
<li><strong>separatior_insertion</strong> (str, int or bool):
str: replace all occurences of "separator_insertion" within the replica names
by "|%s" % (separator_insertion) when constructing the names of the replica.
int: Insert the separator "|" at the position given by separator_insertion.
True (default): separator "|" is inserted after len(ensname), assuming that the
ensemble name is a prefix to the replica name.
None or False: No separator is inserted.</li>
</ul>
<h6 id="returns">Returns</h6>
<ul>
<li><strong>res</strong> (list[Obs]):
Imported data</li>
<li><strong>or</strong></li>
<li><strong>res</strong> (dict):
Imported data and meta-data</li>
</ul>
</div>
</section>
<section id="create_dobs_string">
<input id="create_dobs_string-view-source" class="view-source-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<div class="attr function">
<span class="def">def</span>
<span class="name">create_dobs_string</span><span class="signature pdoc-code multiline">(<span class="param"> <span class="n">obsl</span>,</span><span class="param"> <span class="n">name</span>,</span><span class="param"> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;dobs v1.0&#39;</span>,</span><span class="param"> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span>,</span><span class="param"> <span class="n">symbol</span><span class="o">=</span><span class="p">[]</span>,</span><span class="param"> <span class="n">who</span><span class="o">=</span><span class="kc">None</span>,</span><span class="param"> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span></span><span class="return-annotation">):</span></span>
<label class="view-source-button" for="create_dobs_string-view-source"><span>View Source</span></label>
</div>
<a class="headerlink" href="#create_dobs_string"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="create_dobs_string-681"><a href="#create_dobs_string-681"><span class="linenos">681</span></a><span class="k">def</span> <span class="nf">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;dobs v1.0&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
</span><span id="create_dobs_string-682"><a href="#create_dobs_string-682"><span class="linenos">682</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Generate the string for the export of a list of Obs or structures containing Obs</span>
</span><span id="create_dobs_string-683"><a href="#create_dobs_string-683"><span class="linenos">683</span></a><span class="sd"> to a .xml.gz file according to the Zeuthen dobs format.</span>
</span><span id="create_dobs_string-684"><a href="#create_dobs_string-684"><span class="linenos">684</span></a>
</span><span id="create_dobs_string-685"><a href="#create_dobs_string-685"><span class="linenos">685</span></a><span class="sd"> Tags are not written or recovered automatically. The separator |is removed from the replica names.</span>
</span><span id="create_dobs_string-686"><a href="#create_dobs_string-686"><span class="linenos">686</span></a>
</span><span id="create_dobs_string-687"><a href="#create_dobs_string-687"><span class="linenos">687</span></a><span class="sd"> Parameters</span>
</span><span id="create_dobs_string-688"><a href="#create_dobs_string-688"><span class="linenos">688</span></a><span class="sd"> ----------</span>
</span><span id="create_dobs_string-689"><a href="#create_dobs_string-689"><span class="linenos">689</span></a><span class="sd"> obsl : list</span>
</span><span id="create_dobs_string-690"><a href="#create_dobs_string-690"><span class="linenos">690</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="create_dobs_string-691"><a href="#create_dobs_string-691"><span class="linenos">691</span></a><span class="sd"> The Obs inside a structure do not have to be defined on the same set of configurations,</span>
</span><span id="create_dobs_string-692"><a href="#create_dobs_string-692"><span class="linenos">692</span></a><span class="sd"> but the storage requirement is increased, if this is not the case.</span>
</span><span id="create_dobs_string-693"><a href="#create_dobs_string-693"><span class="linenos">693</span></a><span class="sd"> name : str</span>
</span><span id="create_dobs_string-694"><a href="#create_dobs_string-694"><span class="linenos">694</span></a><span class="sd"> The name of the observable.</span>
</span><span id="create_dobs_string-695"><a href="#create_dobs_string-695"><span class="linenos">695</span></a><span class="sd"> spec : str</span>
</span><span id="create_dobs_string-696"><a href="#create_dobs_string-696"><span class="linenos">696</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="create_dobs_string-697"><a href="#create_dobs_string-697"><span class="linenos">697</span></a><span class="sd"> origin : str</span>
</span><span id="create_dobs_string-698"><a href="#create_dobs_string-698"><span class="linenos">698</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="create_dobs_string-699"><a href="#create_dobs_string-699"><span class="linenos">699</span></a><span class="sd"> symbol : list</span>
</span><span id="create_dobs_string-700"><a href="#create_dobs_string-700"><span class="linenos">700</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="create_dobs_string-701"><a href="#create_dobs_string-701"><span class="linenos">701</span></a><span class="sd"> who : str</span>
</span><span id="create_dobs_string-702"><a href="#create_dobs_string-702"><span class="linenos">702</span></a><span class="sd"> Provide the name of the person that exports the data.</span>
</span><span id="create_dobs_string-703"><a href="#create_dobs_string-703"><span class="linenos">703</span></a><span class="sd"> enstags : dict</span>
</span><span id="create_dobs_string-704"><a href="#create_dobs_string-704"><span class="linenos">704</span></a><span class="sd"> Provide alternative enstag for ensembles in the form enstags = {ename: enstag}</span>
</span><span id="create_dobs_string-705"><a href="#create_dobs_string-705"><span class="linenos">705</span></a><span class="sd"> Otherwise, the ensemble name is used.</span>
</span><span id="create_dobs_string-706"><a href="#create_dobs_string-706"><span class="linenos">706</span></a>
</span><span id="create_dobs_string-707"><a href="#create_dobs_string-707"><span class="linenos">707</span></a><span class="sd"> Returns</span>
</span><span id="create_dobs_string-708"><a href="#create_dobs_string-708"><span class="linenos">708</span></a><span class="sd"> -------</span>
</span><span id="create_dobs_string-709"><a href="#create_dobs_string-709"><span class="linenos">709</span></a><span class="sd"> xml_str : str</span>
</span><span id="create_dobs_string-710"><a href="#create_dobs_string-710"><span class="linenos">710</span></a><span class="sd"> XML string generated from the data</span>
</span><span id="create_dobs_string-711"><a href="#create_dobs_string-711"><span class="linenos">711</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="create_dobs_string-712"><a href="#create_dobs_string-712"><span class="linenos">712</span></a> <span class="k">if</span> <span class="n">enstags</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="create_dobs_string-713"><a href="#create_dobs_string-713"><span class="linenos">713</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-714"><a href="#create_dobs_string-714"><span class="linenos">714</span></a> <span class="n">od</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-715"><a href="#create_dobs_string-715"><span class="linenos">715</span></a> <span class="n">r_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="create_dobs_string-716"><a href="#create_dobs_string-716"><span class="linenos">716</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="create_dobs_string-717"><a href="#create_dobs_string-717"><span class="linenos">717</span></a> <span class="n">r_names</span> <span class="o">+=</span> <span class="p">[</span><span class="n">name</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span> <span class="k">if</span> <span class="n">name</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">mc_names</span><span class="p">]</span>
</span><span id="create_dobs_string-718"><a href="#create_dobs_string-718"><span class="linenos">718</span></a> <span class="n">r_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">r_names</span><span class="p">))</span>
</span><span id="create_dobs_string-719"><a href="#create_dobs_string-719"><span class="linenos">719</span></a> <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">n</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">r_names</span><span class="p">]))</span>
</span><span id="create_dobs_string-720"><a href="#create_dobs_string-720"><span class="linenos">720</span></a> <span class="k">for</span> <span class="n">tmpname</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
</span><span id="create_dobs_string-721"><a href="#create_dobs_string-721"><span class="linenos">721</span></a> <span class="k">if</span> <span class="n">tmpname</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">enstags</span><span class="p">:</span>
</span><span id="create_dobs_string-722"><a href="#create_dobs_string-722"><span class="linenos">722</span></a> <span class="n">enstags</span><span class="p">[</span><span class="n">tmpname</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmpname</span>
</span><span id="create_dobs_string-723"><a href="#create_dobs_string-723"><span class="linenos">723</span></a> <span class="n">ne</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">mc_names</span><span class="p">))</span>
</span><span id="create_dobs_string-724"><a href="#create_dobs_string-724"><span class="linenos">724</span></a> <span class="n">cov_names</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="create_dobs_string-725"><a href="#create_dobs_string-725"><span class="linenos">725</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="create_dobs_string-726"><a href="#create_dobs_string-726"><span class="linenos">726</span></a> <span class="n">cov_names</span> <span class="o">+=</span> <span class="nb">list</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span>
</span><span id="create_dobs_string-727"><a href="#create_dobs_string-727"><span class="linenos">727</span></a> <span class="n">cov_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">cov_names</span><span class="p">))</span>
</span><span id="create_dobs_string-728"><a href="#create_dobs_string-728"><span class="linenos">728</span></a> <span class="n">nc</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">cov_names</span><span class="p">))</span>
</span><span id="create_dobs_string-729"><a href="#create_dobs_string-729"><span class="linenos">729</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-730"><a href="#create_dobs_string-730"><span class="linenos">730</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;SCHEMA&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;NAME&#39;</span><span class="p">:</span> <span class="s1">&#39;lattobs&#39;</span><span class="p">,</span> <span class="s1">&#39;VERSION&#39;</span><span class="p">:</span> <span class="s1">&#39;1.0&#39;</span><span class="p">}</span>
</span><span id="create_dobs_string-731"><a href="#create_dobs_string-731"><span class="linenos">731</span></a> <span class="k">if</span> <span class="n">who</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="create_dobs_string-732"><a href="#create_dobs_string-732"><span class="linenos">732</span></a> <span class="n">who</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
</span><span id="create_dobs_string-733"><a href="#create_dobs_string-733"><span class="linenos">733</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span>
</span><span id="create_dobs_string-734"><a href="#create_dobs_string-734"><span class="linenos">734</span></a> <span class="s1">&#39;who&#39;</span><span class="p">:</span> <span class="n">who</span><span class="p">,</span>
</span><span id="create_dobs_string-735"><a href="#create_dobs_string-735"><span class="linenos">735</span></a> <span class="s1">&#39;date&#39;</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">())[:</span><span class="o">-</span><span class="mi">7</span><span class="p">],</span>
</span><span id="create_dobs_string-736"><a href="#create_dobs_string-736"><span class="linenos">736</span></a> <span class="s1">&#39;host&#39;</span><span class="p">:</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">(),</span>
</span><span id="create_dobs_string-737"><a href="#create_dobs_string-737"><span class="linenos">737</span></a> <span class="s1">&#39;tool&#39;</span><span class="p">:</span> <span class="p">{</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="s1">&#39;pyerrors&#39;</span><span class="p">,</span> <span class="s1">&#39;version&#39;</span><span class="p">:</span> <span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">}}</span>
</span><span id="create_dobs_string-738"><a href="#create_dobs_string-738"><span class="linenos">738</span></a> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;dobs&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-739"><a href="#create_dobs_string-739"><span class="linenos">739</span></a> <span class="n">pd</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;OBSERVABLES&#39;</span><span class="p">][</span><span class="s1">&#39;dobs&#39;</span><span class="p">]</span>
</span><span id="create_dobs_string-740"><a href="#create_dobs_string-740"><span class="linenos">740</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;spec&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">spec</span>
</span><span id="create_dobs_string-741"><a href="#create_dobs_string-741"><span class="linenos">741</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;origin&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">origin</span>
</span><span id="create_dobs_string-742"><a href="#create_dobs_string-742"><span class="linenos">742</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
</span><span id="create_dobs_string-743"><a href="#create_dobs_string-743"><span class="linenos">743</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-744"><a href="#create_dobs_string-744"><span class="linenos">744</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;val&#39;</span>
</span><span id="create_dobs_string-745"><a href="#create_dobs_string-745"><span class="linenos">745</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1 f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="create_dobs_string-746"><a href="#create_dobs_string-746"><span class="linenos">746</span></a> <span class="n">osymbol</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="create_dobs_string-747"><a href="#create_dobs_string-747"><span class="linenos">747</span></a> <span class="k">if</span> <span class="n">symbol</span><span class="p">:</span>
</span><span id="create_dobs_string-748"><a href="#create_dobs_string-748"><span class="linenos">748</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">symbol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
</span><span id="create_dobs_string-749"><a href="#create_dobs_string-749"><span class="linenos">749</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list!&#39;</span><span class="p">)</span>
</span><span id="create_dobs_string-750"><a href="#create_dobs_string-750"><span class="linenos">750</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">symbol</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)):</span>
</span><span id="create_dobs_string-751"><a href="#create_dobs_string-751"><span class="linenos">751</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Symbol has to be a list of lenght 0 or </span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)))</span>
</span><span id="create_dobs_string-752"><a href="#create_dobs_string-752"><span class="linenos">752</span></a> <span class="n">osymbol</span> <span class="o">=</span> <span class="n">symbol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="create_dobs_string-753"><a href="#create_dobs_string-753"><span class="linenos">753</span></a> <span class="k">for</span> <span class="n">s</span> <span class="ow">in</span> <span class="n">symbol</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
</span><span id="create_dobs_string-754"><a href="#create_dobs_string-754"><span class="linenos">754</span></a> <span class="n">osymbol</span> <span class="o">+=</span> <span class="s1">&#39; </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">s</span>
</span><span id="create_dobs_string-755"><a href="#create_dobs_string-755"><span class="linenos">755</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;symbol&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">osymbol</span>
</span><span id="create_dobs_string-756"><a href="#create_dobs_string-756"><span class="linenos">756</span></a>
</span><span id="create_dobs_string-757"><a href="#create_dobs_string-757"><span class="linenos">757</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">][</span><span class="s1">&#39;#values&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39; &#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">])]</span>
</span><span id="create_dobs_string-758"><a href="#create_dobs_string-758"><span class="linenos">758</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;ne&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ne</span><span class="p">)</span>
</span><span id="create_dobs_string-759"><a href="#create_dobs_string-759"><span class="linenos">759</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;nc&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">nc</span><span class="p">)</span>
</span><span id="create_dobs_string-760"><a href="#create_dobs_string-760"><span class="linenos">760</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;edata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="create_dobs_string-761"><a href="#create_dobs_string-761"><span class="linenos">761</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
</span><span id="create_dobs_string-762"><a href="#create_dobs_string-762"><span class="linenos">762</span></a> <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-763"><a href="#create_dobs_string-763"><span class="linenos">763</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;enstag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">enstags</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
</span><span id="create_dobs_string-764"><a href="#create_dobs_string-764"><span class="linenos">764</span></a> <span class="n">onames</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">([</span><span class="n">n</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">r_names</span> <span class="k">if</span> <span class="p">(</span><span class="n">n</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">==</span> <span class="n">name</span><span class="p">)])</span>
</span><span id="create_dobs_string-765"><a href="#create_dobs_string-765"><span class="linenos">765</span></a> <span class="n">nr</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">onames</span><span class="p">)</span>
</span><span id="create_dobs_string-766"><a href="#create_dobs_string-766"><span class="linenos">766</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;nr&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">nr</span>
</span><span id="create_dobs_string-767"><a href="#create_dobs_string-767"><span class="linenos">767</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="create_dobs_string-768"><a href="#create_dobs_string-768"><span class="linenos">768</span></a>
</span><span id="create_dobs_string-769"><a href="#create_dobs_string-769"><span class="linenos">769</span></a> <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nr</span><span class="p">):</span>
</span><span id="create_dobs_string-770"><a href="#create_dobs_string-770"><span class="linenos">770</span></a> <span class="n">ad</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-771"><a href="#create_dobs_string-771"><span class="linenos">771</span></a> <span class="n">repname</span> <span class="o">=</span> <span class="n">onames</span><span class="p">[</span><span class="n">r</span><span class="p">]</span>
</span><span id="create_dobs_string-772"><a href="#create_dobs_string-772"><span class="linenos">772</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">repname</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
</span><span id="create_dobs_string-773"><a href="#create_dobs_string-773"><span class="linenos">773</span></a> <span class="n">idx</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">repname</span><span class="p">,</span> <span class="p">[])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">])</span>
</span><span id="create_dobs_string-774"><a href="#create_dobs_string-774"><span class="linenos">774</span></a> <span class="n">Nconf</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
</span><span id="create_dobs_string-775"><a href="#create_dobs_string-775"><span class="linenos">775</span></a> <span class="n">layout</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> i f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">Nconf</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="create_dobs_string-776"><a href="#create_dobs_string-776"><span class="linenos">776</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">layout</span>
</span><span id="create_dobs_string-777"><a href="#create_dobs_string-777"><span class="linenos">777</span></a> <span class="n">data</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="create_dobs_string-778"><a href="#create_dobs_string-778"><span class="linenos">778</span></a> <span class="n">counters</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">]</span>
</span><span id="create_dobs_string-779"><a href="#create_dobs_string-779"><span class="linenos">779</span></a> <span class="n">offsets</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">repname</span><span class="p">]</span> <span class="o">-</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">if</span> <span class="n">repname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span> <span class="k">else</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">]</span>
</span><span id="create_dobs_string-780"><a href="#create_dobs_string-780"><span class="linenos">780</span></a> <span class="k">for</span> <span class="n">ci</span> <span class="ow">in</span> <span class="n">idx</span><span class="p">:</span>
</span><span id="create_dobs_string-781"><a href="#create_dobs_string-781"><span class="linenos">781</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="n">ci</span>
</span><span id="create_dobs_string-782"><a href="#create_dobs_string-782"><span class="linenos">782</span></a> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">)):</span>
</span><span id="create_dobs_string-783"><a href="#create_dobs_string-783"><span class="linenos">783</span></a> <span class="n">o</span> <span class="o">=</span> <span class="n">obsl</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span>
</span><span id="create_dobs_string-784"><a href="#create_dobs_string-784"><span class="linenos">784</span></a> <span class="k">if</span> <span class="n">repname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">:</span>
</span><span id="create_dobs_string-785"><a href="#create_dobs_string-785"><span class="linenos">785</span></a> <span class="k">if</span> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="create_dobs_string-786"><a href="#create_dobs_string-786"><span class="linenos">786</span></a> <span class="n">num</span> <span class="o">=</span> <span class="mi">0</span>
</span><span id="create_dobs_string-787"><a href="#create_dobs_string-787"><span class="linenos">787</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="create_dobs_string-788"><a href="#create_dobs_string-788"><span class="linenos">788</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_dobs_string-789"><a href="#create_dobs_string-789"><span class="linenos">789</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-790"><a href="#create_dobs_string-790"><span class="linenos">790</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="create_dobs_string-791"><a href="#create_dobs_string-791"><span class="linenos">791</span></a> <span class="k">continue</span>
</span><span id="create_dobs_string-792"><a href="#create_dobs_string-792"><span class="linenos">792</span></a> <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">repname</span><span class="p">][</span><span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]]</span> <span class="o">==</span> <span class="n">ci</span><span class="p">:</span>
</span><span id="create_dobs_string-793"><a href="#create_dobs_string-793"><span class="linenos">793</span></a> <span class="n">num</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">repname</span><span class="p">][</span><span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]]</span> <span class="o">+</span> <span class="n">offsets</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span>
</span><span id="create_dobs_string-794"><a href="#create_dobs_string-794"><span class="linenos">794</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="create_dobs_string-795"><a href="#create_dobs_string-795"><span class="linenos">795</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_dobs_string-796"><a href="#create_dobs_string-796"><span class="linenos">796</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-797"><a href="#create_dobs_string-797"><span class="linenos">797</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="create_dobs_string-798"><a href="#create_dobs_string-798"><span class="linenos">798</span></a> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
</span><span id="create_dobs_string-799"><a href="#create_dobs_string-799"><span class="linenos">799</span></a> <span class="k">if</span> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">repname</span><span class="p">]):</span>
</span><span id="create_dobs_string-800"><a href="#create_dobs_string-800"><span class="linenos">800</span></a> <span class="n">counters</span><span class="p">[</span><span class="n">oi</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
</span><span id="create_dobs_string-801"><a href="#create_dobs_string-801"><span class="linenos">801</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-802"><a href="#create_dobs_string-802"><span class="linenos">802</span></a> <span class="n">num</span> <span class="o">=</span> <span class="mi">0</span>
</span><span id="create_dobs_string-803"><a href="#create_dobs_string-803"><span class="linenos">803</span></a> <span class="k">if</span> <span class="n">num</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="create_dobs_string-804"><a href="#create_dobs_string-804"><span class="linenos">804</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_dobs_string-805"><a href="#create_dobs_string-805"><span class="linenos">805</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-806"><a href="#create_dobs_string-806"><span class="linenos">806</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.16e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">num</span><span class="p">)</span>
</span><span id="create_dobs_string-807"><a href="#create_dobs_string-807"><span class="linenos">807</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-808"><a href="#create_dobs_string-808"><span class="linenos">808</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_dobs_string-809"><a href="#create_dobs_string-809"><span class="linenos">809</span></a> <span class="n">data</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="create_dobs_string-810"><a href="#create_dobs_string-810"><span class="linenos">810</span></a> <span class="n">ad</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
</span><span id="create_dobs_string-811"><a href="#create_dobs_string-811"><span class="linenos">811</span></a> <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ad</span><span class="p">)</span>
</span><span id="create_dobs_string-812"><a href="#create_dobs_string-812"><span class="linenos">812</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;edata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
</span><span id="create_dobs_string-813"><a href="#create_dobs_string-813"><span class="linenos">813</span></a>
</span><span id="create_dobs_string-814"><a href="#create_dobs_string-814"><span class="linenos">814</span></a> <span class="n">allcov</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-815"><a href="#create_dobs_string-815"><span class="linenos">815</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="create_dobs_string-816"><a href="#create_dobs_string-816"><span class="linenos">816</span></a> <span class="k">for</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
</span><span id="create_dobs_string-817"><a href="#create_dobs_string-817"><span class="linenos">817</span></a> <span class="k">if</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">allcov</span><span class="p">:</span>
</span><span id="create_dobs_string-818"><a href="#create_dobs_string-818"><span class="linenos">818</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">],</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">):</span>
</span><span id="create_dobs_string-819"><a href="#create_dobs_string-819"><span class="linenos">819</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Inconsistent covariance matrices for </span><span class="si">%s</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">cname</span><span class="p">))</span>
</span><span id="create_dobs_string-820"><a href="#create_dobs_string-820"><span class="linenos">820</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-821"><a href="#create_dobs_string-821"><span class="linenos">821</span></a> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span>
</span><span id="create_dobs_string-822"><a href="#create_dobs_string-822"><span class="linenos">822</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
</span><span id="create_dobs_string-823"><a href="#create_dobs_string-823"><span class="linenos">823</span></a> <span class="k">for</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">cov_names</span><span class="p">:</span>
</span><span id="create_dobs_string-824"><a href="#create_dobs_string-824"><span class="linenos">824</span></a> <span class="n">cd</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="create_dobs_string-825"><a href="#create_dobs_string-825"><span class="linenos">825</span></a> <span class="n">cd</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cname</span>
</span><span id="create_dobs_string-826"><a href="#create_dobs_string-826"><span class="linenos">826</span></a>
</span><span id="create_dobs_string-827"><a href="#create_dobs_string-827"><span class="linenos">827</span></a> <span class="n">covd</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;id&#39;</span><span class="p">:</span> <span class="s1">&#39;cov&#39;</span><span class="p">}</span>
</span><span id="create_dobs_string-828"><a href="#create_dobs_string-828"><span class="linenos">828</span></a> <span class="k">if</span> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">():</span>
</span><span id="create_dobs_string-829"><a href="#create_dobs_string-829"><span class="linenos">829</span></a> <span class="n">ncov</span> <span class="o">=</span> <span class="mi">1</span>
</span><span id="create_dobs_string-830"><a href="#create_dobs_string-830"><span class="linenos">830</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1 1 f&#39;</span>
</span><span id="create_dobs_string-831"><a href="#create_dobs_string-831"><span class="linenos">831</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%1.14e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">])</span>
</span><span id="create_dobs_string-832"><a href="#create_dobs_string-832"><span class="linenos">832</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-833"><a href="#create_dobs_string-833"><span class="linenos">833</span></a> <span class="n">shape</span> <span class="o">=</span> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span>
</span><span id="create_dobs_string-834"><a href="#create_dobs_string-834"><span class="linenos">834</span></a> <span class="k">assert</span> <span class="p">(</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
</span><span id="create_dobs_string-835"><a href="#create_dobs_string-835"><span class="linenos">835</span></a> <span class="n">ncov</span> <span class="o">=</span> <span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
</span><span id="create_dobs_string-836"><a href="#create_dobs_string-836"><span class="linenos">836</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> </span><span class="si">%d</span><span class="s1"> f&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ncov</span><span class="p">,</span> <span class="n">ncov</span><span class="p">)</span>
</span><span id="create_dobs_string-837"><a href="#create_dobs_string-837"><span class="linenos">837</span></a> <span class="n">ds</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="create_dobs_string-838"><a href="#create_dobs_string-838"><span class="linenos">838</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
</span><span id="create_dobs_string-839"><a href="#create_dobs_string-839"><span class="linenos">839</span></a> <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
</span><span id="create_dobs_string-840"><a href="#create_dobs_string-840"><span class="linenos">840</span></a> <span class="n">val</span> <span class="o">=</span> <span class="n">allcov</span><span class="p">[</span><span class="n">cname</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span>
</span><span id="create_dobs_string-841"><a href="#create_dobs_string-841"><span class="linenos">841</span></a> <span class="k">if</span> <span class="n">val</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="create_dobs_string-842"><a href="#create_dobs_string-842"><span class="linenos">842</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_dobs_string-843"><a href="#create_dobs_string-843"><span class="linenos">843</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-844"><a href="#create_dobs_string-844"><span class="linenos">844</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.14e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">val</span><span class="p">)</span>
</span><span id="create_dobs_string-845"><a href="#create_dobs_string-845"><span class="linenos">845</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
</span><span id="create_dobs_string-846"><a href="#create_dobs_string-846"><span class="linenos">846</span></a> <span class="n">covd</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ds</span>
</span><span id="create_dobs_string-847"><a href="#create_dobs_string-847"><span class="linenos">847</span></a>
</span><span id="create_dobs_string-848"><a href="#create_dobs_string-848"><span class="linenos">848</span></a> <span class="n">gradd</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;id&#39;</span><span class="p">:</span> <span class="s1">&#39;grad&#39;</span><span class="p">}</span>
</span><span id="create_dobs_string-849"><a href="#create_dobs_string-849"><span class="linenos">849</span></a> <span class="n">gradd</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1"> f</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ncov</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsl</span><span class="p">))</span>
</span><span id="create_dobs_string-850"><a href="#create_dobs_string-850"><span class="linenos">850</span></a> <span class="n">ds</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
</span><span id="create_dobs_string-851"><a href="#create_dobs_string-851"><span class="linenos">851</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
</span><span id="create_dobs_string-852"><a href="#create_dobs_string-852"><span class="linenos">852</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obsl</span><span class="p">:</span>
</span><span id="create_dobs_string-853"><a href="#create_dobs_string-853"><span class="linenos">853</span></a> <span class="k">if</span> <span class="n">cname</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
</span><span id="create_dobs_string-854"><a href="#create_dobs_string-854"><span class="linenos">854</span></a> <span class="n">val</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">cname</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">item</span><span class="p">()</span>
</span><span id="create_dobs_string-855"><a href="#create_dobs_string-855"><span class="linenos">855</span></a> <span class="k">if</span> <span class="n">val</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
</span><span id="create_dobs_string-856"><a href="#create_dobs_string-856"><span class="linenos">856</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.14e</span><span class="s1"> &#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">val</span><span class="p">)</span>
</span><span id="create_dobs_string-857"><a href="#create_dobs_string-857"><span class="linenos">857</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-858"><a href="#create_dobs_string-858"><span class="linenos">858</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_dobs_string-859"><a href="#create_dobs_string-859"><span class="linenos">859</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="create_dobs_string-860"><a href="#create_dobs_string-860"><span class="linenos">860</span></a> <span class="n">ds</span> <span class="o">+=</span> <span class="s1">&#39;0 &#39;</span>
</span><span id="create_dobs_string-861"><a href="#create_dobs_string-861"><span class="linenos">861</span></a> <span class="n">gradd</span><span class="p">[</span><span class="s1">&#39;#data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ds</span>
</span><span id="create_dobs_string-862"><a href="#create_dobs_string-862"><span class="linenos">862</span></a> <span class="n">cd</span><span class="p">[</span><span class="s1">&#39;array&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">covd</span><span class="p">,</span> <span class="n">gradd</span><span class="p">]</span>
</span><span id="create_dobs_string-863"><a href="#create_dobs_string-863"><span class="linenos">863</span></a> <span class="n">pd</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cd</span><span class="p">)</span>
</span><span id="create_dobs_string-864"><a href="#create_dobs_string-864"><span class="linenos">864</span></a>
</span><span id="create_dobs_string-865"><a href="#create_dobs_string-865"><span class="linenos">865</span></a> <span class="n">rs</span> <span class="o">=</span> <span class="s1">&#39;&lt;?xml version=&quot;1.0&quot; encoding=&quot;utf-8&quot;?&gt;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">_dobsdict_to_xmlstring_spaces</span><span class="p">(</span><span class="n">od</span><span class="p">)</span>
</span><span id="create_dobs_string-866"><a href="#create_dobs_string-866"><span class="linenos">866</span></a>
</span><span id="create_dobs_string-867"><a href="#create_dobs_string-867"><span class="linenos">867</span></a> <span class="k">return</span> <span class="n">rs</span>
</span></pre></div>
<div class="docstring"><p>Generate the string for the export of a list of Obs or structures containing Obs
to a .xml.gz file according to the Zeuthen dobs format.</p>
<p>Tags are not written or recovered automatically. The separator |is removed from the replica names.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>obsl</strong> (list):
List of Obs that will be exported.
The Obs inside a structure do not have to be defined on the same set of configurations,
but the storage requirement is increased, if this is not the case.</li>
<li><strong>name</strong> (str):
The name of the observable.</li>
<li><strong>spec</strong> (str):
Optional string that describes the contents of the file.</li>
<li><strong>origin</strong> (str):
Specify where the data has its origin.</li>
<li><strong>symbol</strong> (list):
A list of symbols that describe the observables to be written. May be empty.</li>
<li><strong>who</strong> (str):
Provide the name of the person that exports the data.</li>
<li><strong>enstags</strong> (dict):
Provide alternative enstag for ensembles in the form enstags = {ename: enstag}
Otherwise, the ensemble name is used.</li>
</ul>
<h6 id="returns">Returns</h6>
<ul>
<li><strong>xml_str</strong> (str):
XML string generated from the data</li>
</ul>
</div>
</section>
<section id="write_dobs">
<input id="write_dobs-view-source" class="view-source-toggle-state" type="checkbox" aria-hidden="true" tabindex="-1">
<div class="attr function">
<span class="def">def</span>
<span class="name">write_dobs</span><span class="signature pdoc-code multiline">(<span class="param"> <span class="n">obsl</span>,</span><span class="param"> <span class="n">fname</span>,</span><span class="param"> <span class="n">name</span>,</span><span class="param"> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;dobs v1.0&#39;</span>,</span><span class="param"> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span>,</span><span class="param"> <span class="n">symbol</span><span class="o">=</span><span class="p">[]</span>,</span><span class="param"> <span class="n">who</span><span class="o">=</span><span class="kc">None</span>,</span><span class="param"> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span>,</span><span class="param"> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span></span><span class="return-annotation">):</span></span>
<label class="view-source-button" for="write_dobs-view-source"><span>View Source</span></label>
</div>
<a class="headerlink" href="#write_dobs"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="write_dobs-870"><a href="#write_dobs-870"><span class="linenos">870</span></a><span class="k">def</span> <span class="nf">write_dobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">&#39;dobs v1.0&#39;</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
</span><span id="write_dobs-871"><a href="#write_dobs-871"><span class="linenos">871</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .xml.gz file</span>
</span><span id="write_dobs-872"><a href="#write_dobs-872"><span class="linenos">872</span></a><span class="sd"> according to the Zeuthen dobs format.</span>
</span><span id="write_dobs-873"><a href="#write_dobs-873"><span class="linenos">873</span></a>
</span><span id="write_dobs-874"><a href="#write_dobs-874"><span class="linenos">874</span></a><span class="sd"> Tags are not written or recovered automatically. The separator | is removed from the replica names.</span>
</span><span id="write_dobs-875"><a href="#write_dobs-875"><span class="linenos">875</span></a>
</span><span id="write_dobs-876"><a href="#write_dobs-876"><span class="linenos">876</span></a><span class="sd"> Parameters</span>
</span><span id="write_dobs-877"><a href="#write_dobs-877"><span class="linenos">877</span></a><span class="sd"> ----------</span>
</span><span id="write_dobs-878"><a href="#write_dobs-878"><span class="linenos">878</span></a><span class="sd"> obsl : list</span>
</span><span id="write_dobs-879"><a href="#write_dobs-879"><span class="linenos">879</span></a><span class="sd"> List of Obs that will be exported.</span>
</span><span id="write_dobs-880"><a href="#write_dobs-880"><span class="linenos">880</span></a><span class="sd"> The Obs inside a structure do not have to be defined on the same set of configurations,</span>
</span><span id="write_dobs-881"><a href="#write_dobs-881"><span class="linenos">881</span></a><span class="sd"> but the storage requirement is increased, if this is not the case.</span>
</span><span id="write_dobs-882"><a href="#write_dobs-882"><span class="linenos">882</span></a><span class="sd"> fname : str</span>
</span><span id="write_dobs-883"><a href="#write_dobs-883"><span class="linenos">883</span></a><span class="sd"> Filename of the output file.</span>
</span><span id="write_dobs-884"><a href="#write_dobs-884"><span class="linenos">884</span></a><span class="sd"> name : str</span>
</span><span id="write_dobs-885"><a href="#write_dobs-885"><span class="linenos">885</span></a><span class="sd"> The name of the observable.</span>
</span><span id="write_dobs-886"><a href="#write_dobs-886"><span class="linenos">886</span></a><span class="sd"> spec : str</span>
</span><span id="write_dobs-887"><a href="#write_dobs-887"><span class="linenos">887</span></a><span class="sd"> Optional string that describes the contents of the file.</span>
</span><span id="write_dobs-888"><a href="#write_dobs-888"><span class="linenos">888</span></a><span class="sd"> origin : str</span>
</span><span id="write_dobs-889"><a href="#write_dobs-889"><span class="linenos">889</span></a><span class="sd"> Specify where the data has its origin.</span>
</span><span id="write_dobs-890"><a href="#write_dobs-890"><span class="linenos">890</span></a><span class="sd"> symbol : list</span>
</span><span id="write_dobs-891"><a href="#write_dobs-891"><span class="linenos">891</span></a><span class="sd"> A list of symbols that describe the observables to be written. May be empty.</span>
</span><span id="write_dobs-892"><a href="#write_dobs-892"><span class="linenos">892</span></a><span class="sd"> who : str</span>
</span><span id="write_dobs-893"><a href="#write_dobs-893"><span class="linenos">893</span></a><span class="sd"> Provide the name of the person that exports the data.</span>
</span><span id="write_dobs-894"><a href="#write_dobs-894"><span class="linenos">894</span></a><span class="sd"> enstags : dict</span>
</span><span id="write_dobs-895"><a href="#write_dobs-895"><span class="linenos">895</span></a><span class="sd"> Provide alternative enstag for ensembles in the form enstags = {ename: enstag}</span>
</span><span id="write_dobs-896"><a href="#write_dobs-896"><span class="linenos">896</span></a><span class="sd"> Otherwise, the ensemble name is used.</span>
</span><span id="write_dobs-897"><a href="#write_dobs-897"><span class="linenos">897</span></a><span class="sd"> gz : bool</span>
</span><span id="write_dobs-898"><a href="#write_dobs-898"><span class="linenos">898</span></a><span class="sd"> If True, the output is a gzipped XML. If False, the output is a XML file.</span>
</span><span id="write_dobs-899"><a href="#write_dobs-899"><span class="linenos">899</span></a>
</span><span id="write_dobs-900"><a href="#write_dobs-900"><span class="linenos">900</span></a><span class="sd"> Returns</span>
</span><span id="write_dobs-901"><a href="#write_dobs-901"><span class="linenos">901</span></a><span class="sd"> -------</span>
</span><span id="write_dobs-902"><a href="#write_dobs-902"><span class="linenos">902</span></a><span class="sd"> None</span>
</span><span id="write_dobs-903"><a href="#write_dobs-903"><span class="linenos">903</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="write_dobs-904"><a href="#write_dobs-904"><span class="linenos">904</span></a> <span class="k">if</span> <span class="n">enstags</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
</span><span id="write_dobs-905"><a href="#write_dobs-905"><span class="linenos">905</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
</span><span id="write_dobs-906"><a href="#write_dobs-906"><span class="linenos">906</span></a>
</span><span id="write_dobs-907"><a href="#write_dobs-907"><span class="linenos">907</span></a> <span class="n">dobsstring</span> <span class="o">=</span> <span class="n">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">who</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="n">enstags</span><span class="p">)</span>
</span><span id="write_dobs-908"><a href="#write_dobs-908"><span class="linenos">908</span></a>
</span><span id="write_dobs-909"><a href="#write_dobs-909"><span class="linenos">909</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.xml&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="write_dobs-910"><a href="#write_dobs-910"><span class="linenos">910</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.xml&#39;</span>
</span><span id="write_dobs-911"><a href="#write_dobs-911"><span class="linenos">911</span></a>
</span><span id="write_dobs-912"><a href="#write_dobs-912"><span class="linenos">912</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
</span><span id="write_dobs-913"><a href="#write_dobs-913"><span class="linenos">913</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
</span><span id="write_dobs-914"><a href="#write_dobs-914"><span class="linenos">914</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
</span><span id="write_dobs-915"><a href="#write_dobs-915"><span class="linenos">915</span></a>
</span><span id="write_dobs-916"><a href="#write_dobs-916"><span class="linenos">916</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
</span><span id="write_dobs-917"><a href="#write_dobs-917"><span class="linenos">917</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
</span><span id="write_dobs-918"><a href="#write_dobs-918"><span class="linenos">918</span></a> <span class="k">else</span><span class="p">:</span>
</span><span id="write_dobs-919"><a href="#write_dobs-919"><span class="linenos">919</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
</span><span id="write_dobs-920"><a href="#write_dobs-920"><span class="linenos">920</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="p">)</span>
</span><span id="write_dobs-921"><a href="#write_dobs-921"><span class="linenos">921</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
</span></pre></div>
<div class="docstring"><p>Export a list of Obs or structures containing Obs to a .xml.gz file
according to the Zeuthen dobs format.</p>
<p>Tags are not written or recovered automatically. The separator | is removed from the replica names.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>obsl</strong> (list):
List of Obs that will be exported.
The Obs inside a structure do not have to be defined on the same set of configurations,
but the storage requirement is increased, if this is not the case.</li>
<li><strong>fname</strong> (str):
Filename of the output file.</li>
<li><strong>name</strong> (str):
The name of the observable.</li>
<li><strong>spec</strong> (str):
Optional string that describes the contents of the file.</li>
<li><strong>origin</strong> (str):
Specify where the data has its origin.</li>
<li><strong>symbol</strong> (list):
A list of symbols that describe the observables to be written. May be empty.</li>
<li><strong>who</strong> (str):
Provide the name of the person that exports the data.</li>
<li><strong>enstags</strong> (dict):
Provide alternative enstag for ensembles in the form enstags = {ename: enstag}
Otherwise, the ensemble name is used.</li>
<li><strong>gz</strong> (bool):
If True, the output is a gzipped XML. If False, the output is a XML file.</li>
</ul>
<h6 id="returns">Returns</h6>
<ul>
<li><strong>None</strong></li>
</ul>
</div>
</section>
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elem = originalContent;
}
if (currentContent !== elem) {
currentContent.replaceWith(elem);
currentContent = elem;
}
}
function getSearchTerm() {
return (new URL(window.location)).searchParams.get("search");
}
const searchBox = document.querySelector(".pdoc input[type=search]");
searchBox.addEventListener("input", function () {
let url = new URL(window.location);
if (searchBox.value.trim()) {
url.hash = "";
url.searchParams.set("search", searchBox.value);
} else {
url.searchParams.delete("search");
}
history.replaceState("", "", url.toString());
onInput();
});
window.addEventListener("popstate", onInput);
let search, searchErr;
async function initialize() {
try {
search = await new Promise((resolve, reject) => {
const script = document.createElement("script");
script.type = "text/javascript";
script.async = true;
script.onload = () => resolve(window.pdocSearch);
script.onerror = (e) => reject(e);
script.src = "../../search.js";
document.getElementsByTagName("head")[0].appendChild(script);
});
} catch (e) {
console.error("Cannot fetch pdoc search index");
searchErr = "Cannot fetch search index.";
}
onInput();
document.querySelector("nav.pdoc").addEventListener("click", e => {
if (e.target.hash) {
searchBox.value = "";
searchBox.dispatchEvent(new Event("input"));
}
});
}
function onInput() {
setContent((() => {
const term = getSearchTerm();
if (!term) {
return null
}
if (searchErr) {
return `<h3>Error: ${searchErr}</h3>`
}
if (!search) {
return "<h3>Searching...</h3>"
}
window.scrollTo({top: 0, left: 0, behavior: 'auto'});
const results = search(term);
let html;
if (results.length === 0) {
html = `No search results for '${escapeHTML(term)}'.`
} else {
html = `<h4>${results.length} search result${results.length > 1 ? "s" : ""} for '${escapeHTML(term)}'.</h4>`;
}
for (let result of results.slice(0, 10)) {
let doc = result.doc;
let url = `../../${doc.modulename.replaceAll(".", "/")}.html`;
if (doc.qualname) {
url += `#${doc.qualname}`;
}
let heading;
switch (result.doc.kind) {
case "function":
if (doc.fullname.endsWith(".__init__")) {
heading = `<span class="name">${doc.fullname.replace(/\.__init__$/, "")}</span>${doc.signature}`;
} else {
heading = `<span class="def">${doc.funcdef}</span> <span class="name">${doc.fullname}</span>${doc.signature}`;
}
break;
case "class":
heading = `<span class="def">class</span> <span class="name">${doc.fullname}</span>`;
if (doc.bases)
heading += `<wbr>(<span class="base">${doc.bases}</span>)`;
heading += `:`;
break;
case "variable":
heading = `<span class="name">${doc.fullname}</span>`;
if (doc.annotation)
heading += `<span class="annotation">${doc.annotation}</span>`;
if (doc.default_value)
heading += `<span class="default_value"> = ${doc.default_value}</span>`;
break;
default:
heading = `<span class="name">${doc.fullname}</span>`;
break;
}
html += `
<section class="search-result">
<a href="${url}" class="attr ${doc.kind}">${heading}</a>
<div class="docstring">${doc.doc}</div>
</section>
`;
}
return html;
})());
}
if (getSearchTerm()) {
initialize();
searchBox.value = getSearchTerm();
onInput();
} else {
searchBox.addEventListener("focus", initialize, {once: true});
}
searchBox.addEventListener("keydown", e => {
if (["ArrowDown", "ArrowUp", "Enter"].includes(e.key)) {
let focused = currentContent.querySelector(".search-result.focused");
if (!focused) {
currentContent.querySelector(".search-result").classList.add("focused");
} else if (
e.key === "ArrowDown"
&& focused.nextElementSibling
&& focused.nextElementSibling.classList.contains("search-result")
) {
focused.classList.remove("focused");
focused.nextElementSibling.classList.add("focused");
focused.nextElementSibling.scrollIntoView({
behavior: "smooth",
block: "nearest",
inline: "nearest"
});
} else if (
e.key === "ArrowUp"
&& focused.previousElementSibling
&& focused.previousElementSibling.classList.contains("search-result")
) {
focused.classList.remove("focused");
focused.previousElementSibling.classList.add("focused");
focused.previousElementSibling.scrollIntoView({
behavior: "smooth",
block: "nearest",
inline: "nearest"
});
} else if (
e.key === "Enter"
) {
focused.querySelector("a").click();
}
}
});
</script></body>
</html>
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