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128 lines
4.1 KiB
Python
128 lines
4.1 KiB
Python
import os
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import fnmatch
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import re
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import struct
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import numpy as np # Thinly-wrapped numpy
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from ..obs import Obs
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def read_pbp(path, prefix, **kwargs):
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"""Read pbp format from given folder structure. Returns a list of length nrw
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Parameters
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----------
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r_start : list
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list which contains the first config to be read for each replicum
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r_stop : list
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list which contains the last config to be read for each replicum
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"""
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extract_nfct = 1
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ls = []
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for (dirpath, dirnames, filenames) in os.walk(path):
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ls.extend(filenames)
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break
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if not ls:
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raise Exception('Error, directory not found')
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# Exclude files with different names
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for exc in ls:
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if not fnmatch.fnmatch(exc, prefix + '*.dat'):
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ls = list(set(ls) - set([exc]))
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if len(ls) > 1:
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ls.sort(key=lambda x: int(re.findall(r'\d+', x[len(prefix):])[0]))
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replica = len(ls)
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if 'r_start' in kwargs:
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r_start = kwargs.get('r_start')
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if len(r_start) != replica:
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raise Exception('r_start does not match number of replicas')
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# Adjust Configuration numbering to python index
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r_start = [o - 1 if o else None for o in r_start]
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else:
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r_start = [None] * replica
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if 'r_stop' in kwargs:
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r_stop = kwargs.get('r_stop')
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if len(r_stop) != replica:
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raise Exception('r_stop does not match number of replicas')
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else:
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r_stop = [None] * replica
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print(r'Read <bar{psi}\psi> from', prefix[:-1], ',', replica, 'replica', end='')
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print_err = 0
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if 'print_err' in kwargs:
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print_err = 1
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print()
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deltas = []
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for rep in range(replica):
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tmp_array = []
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with open(path + '/' + ls[rep], 'rb') as fp:
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t = fp.read(4) # number of reweighting factors
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if rep == 0:
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nrw = struct.unpack('i', t)[0]
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for k in range(nrw):
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deltas.append([])
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else:
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if nrw != struct.unpack('i', t)[0]:
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raise Exception('Error: different number of factors for replicum', rep)
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for k in range(nrw):
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tmp_array.append([])
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# This block is necessary for openQCD1.6 ms1 files
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nfct = []
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if extract_nfct == 1:
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for i in range(nrw):
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t = fp.read(4)
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nfct.append(struct.unpack('i', t)[0])
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print('nfct: ', nfct) # Hasenbusch factor, 1 for rat reweighting
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else:
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for i in range(nrw):
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nfct.append(1)
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nsrc = []
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for i in range(nrw):
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t = fp.read(4)
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nsrc.append(struct.unpack('i', t)[0])
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# body
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while True:
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t = fp.read(4)
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if len(t) < 4:
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break
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if print_err:
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config_no = struct.unpack('i', t)
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for i in range(nrw):
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tmp_nfct = 1.0
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for j in range(nfct[i]):
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t = fp.read(8 * nsrc[i])
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t = fp.read(8 * nsrc[i])
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tmp_rw = struct.unpack('d' * nsrc[i], t)
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tmp_nfct *= np.mean(np.asarray(tmp_rw))
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if print_err:
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print(config_no, i, j, np.mean(np.asarray(tmp_rw)), np.std(np.asarray(tmp_rw)))
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print('Sources:', np.asarray(tmp_rw))
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print('Partial factor:', tmp_nfct)
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tmp_array[i].append(tmp_nfct)
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for k in range(nrw):
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deltas[k].append(tmp_array[k][r_start[rep]:r_stop[rep]])
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rep_names = []
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for entry in ls:
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truncated_entry = entry.split('.')[0]
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idx = truncated_entry.index('r')
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rep_names.append(truncated_entry[:idx] + '|' + truncated_entry[idx:])
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print(',', nrw, r'<bar{psi}\psi> with', nsrc, 'sources')
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result = []
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for t in range(nrw):
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result.append(Obs(deltas[t], rep_names))
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return result
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