lattice/pyerrors
1
0
Fork 0
mirror of https://github.com/fjosw/pyerrors.git synced 2026-03-31 15:49:12 +02:00
Code Issues Projects Releases Packages Wiki Activity
2,556 commits 23 branches 31 tags 52 MiB
Commit graph

2,556 commits

This branch
This branch
All branches
Author SHA1 Message Date
fjosw
dac2ee6732 Documentation updated 2026-03-29 16:47:06 +00:00
fjosw
cff0b8ee1e Merge branch 'develop' into documentation 2026-03-29 16:46:30 +00:00
Fabian Joswig
682d23604d
 		[Fix] Pandas 3 string type changes (#278) 
* [Fix] Pandas 3 string type handling

* [ci] Temporarily remove WError because of scipy deprecation

* [Fix] Address edge cases in _deserialize_df

- Use pd.isna() instead of truthiness check for gzip null guard, fixing
  incorrect behavior when null is np.nan (which is truthy in Python)
- Add bounds check to while loop to prevent IndexError when all non-null
  values are empty strings converted to None by regex replace

* [Fix] Address edge cases in _deserialize_df and add string dtype tests

- Guard against IndexError on empty DataFrames and all-null columns
- Use is not None instead of pd.isna() for Obs objects in auto_gamma
- Add tests for string dtype columns (with/without None, CSV and SQL)
- Add test for empty DataFrame deserialization

* [Fix] Avoid skipping NA-to-None conversion and guard auto_gamma against None lists

- Replace continue with conditional to preserve NA-to-None conversion for all-null columns
- Guard auto_gamma list lambda against None values to prevent TypeError
- Add tests for all-empty-string columns and Obs lists with None + auto_gamma
 2026-03-29 18:46:15 +02:00
fjosw
8811f01fb8 Documentation updated 2025-11-25 11:57:51 +00:00
fjosw
40f4bfd46c Merge branch 'develop' into documentation 2025-11-25 11:57:18 +00:00
Justus Kuhlmann
da399b7c02
 		Fix/check append rep (#277) 
* add option that the headers of an append-mode file can have different format

* add tests for irregular headers in append mode

* hotfix: fix bug in append start read implementation

* lint

* lint II
 2025-11-25 12:57:03 +01:00
fjosw
b43f0e2fcc Documentation updated 2025-10-30 15:37:13 +00:00
fjosw
54d89a8663 Merge branch 'develop' into documentation 2025-10-30 15:36:32 +00:00
Fabian Joswig
1002dd0e51 [chore] Bump version to v2.17.0-dev 2025-10-30 16:36:09 +01:00
fjosw
c8e94419a1 Documentation updated 2025-10-30 15:35:32 +00:00
fjosw
eef4d6de16 Merge branch 'develop' into documentation 2025-10-30 15:34:50 +00:00
Fabian Joswig
4cdddf0a76 [chore] Bump version and changelog v2.16.0 2025-10-30 16:34:05 +01:00
fjosw
f8f63511ab Documentation updated 2025-10-30 15:27:44 +00:00
fjosw
252faf9683 Merge branch 'develop' into documentation 2025-10-30 15:27:07 +00:00
Justus Kuhlmann
da0a4cc40a
 		Feat/idl func (#275) 
* outsource function to get idl for append mode

* Expose option to define function for idl by the user.

* clean up args

* add tests

* lint
 2025-10-30 16:26:52 +01:00
fjosw
befcf1afcc Documentation updated 2025-10-22 13:37:04 +00:00
fjosw
d6f483eb1f Merge branch 'develop' into documentation 2025-10-22 13:36:19 +00:00
Pia Leonie Jones Petrak
e0076ccea9
 		[Fix] corrected expected_chisquare by adding the number of priors (#274) 
* [Fix] corrected expected_chisquare by adding the number of priors

* test/fits_test.py: dof and expected chisquare the same in uncorrelated fit w. prior to uncorrelated data
 2025-10-22 15:36:01 +02:00
fjosw
4476448715 Documentation updated 2025-10-19 11:00:15 +00:00
fjosw
0fc0a377a7 Merge branch 'develop' into documentation 2025-10-19 10:59:33 +00:00
Fabian Joswig
85ae9d7563
 		[chore] Remove support for python 3.9 and bump python versions in runners (#273) 2025-10-19 12:59:20 +02:00
Fabian Joswig
a600a69bb9
 		[ci] Add python 3.14 runners for pytest workflow (#270) 
* [ci] Add python 3.14 runners for pytest workflow

* [ci] Deactivate -Werror option in pytest workflow to fix python 3.14
runner

* [ci] Run tests with Werror for all python versions but for 3.14
 2025-10-19 12:44:06 +02:00
fjosw
2da5d8d615 Documentation updated 2025-10-19 10:33:47 +00:00
fjosw
ff7391b447 Merge branch 'develop' into documentation 2025-10-19 10:33:12 +00:00
Fabian Joswig
4c4173c461 [chore] Bump version to 2.16.0-dev 2025-10-19 12:32:52 +02:00
fjosw
bf42e0e2b3 Documentation updated 2025-10-19 10:30:53 +00:00
fjosw
3c1d1d188d Merge branch 'develop' into documentation 2025-10-19 10:30:15 +00:00
Fabian Joswig
6c7daac44b Merge branch 'develop' v2.15.1 2025-10-19 12:30:10 +02:00
Fabian Joswig
1d031d0eab [chore] Bump version and update changelog 2025-10-19 12:29:45 +02:00
fjosw
1eb6305597 Documentation updated 2025-10-19 10:29:24 +00:00
fjosw
5de3c89700 Merge branch 'develop' into documentation 2025-10-19 10:28:50 +00:00
Ruaidhrí
e0bfcabc0c
 		pyerrors/correlators.py: Allowing for None values in pe.Corr.prune (#272) 
* pyerrors/correlators.py: Allowing for None values in pe.Corr.prune

Closes: fjosw#271

* wip

* test/correlators_test.py: Adding test for updated prune method.

Closes #271
 2025-10-19 12:28:36 +02:00
fjosw
df1e840f25 Documentation updated 2025-10-10 15:39:05 +00:00
fjosw
9b1a2188c9 Merge branch 'develop' into documentation 2025-10-10 15:38:27 +00:00
Fabian Joswig
3e955d4976 [chore] Bump version to 2.16.0-dev 2025-10-10 17:38:02 +02:00
fjosw
a4ae081101 Documentation updated 2025-10-10 15:35:13 +00:00
fjosw
c3873d27d2 Merge branch 'develop' into documentation 2025-10-10 15:34:40 +00:00
Fabian Joswig
dbe5912ca3 Merge branch 'develop' v2.15.0 2025-10-10 17:34:35 +02:00
Fabian Joswig
5bcbe5c2ff [chore] Bump version and update Changelog 2025-10-10 17:34:18 +02:00
Fabian Joswig
cf36d17a00 [CI] Ignore sinc test failure 2025-10-10 17:31:14 +02:00
Fabian Joswig
6521e16901 [CI] Ignore sinc test failure 2025-10-10 17:30:00 +02:00
fjosw
594638fdef Documentation updated 2025-10-09 11:14:59 +00:00
fjosw
ed158d17f5 Merge branch 'develop' into documentation 2025-10-09 11:14:27 +00:00
s-kuberski
68e4633ae0
 		[Feat] Number of fit parameters can be explicitly passed to the fit functions (#269) 2025-10-09 13:14:17 +02:00
fjosw
2d84a2871c Documentation updated 2025-05-05 15:10:31 +00:00
fjosw
df330e19b6 Merge branch 'develop' into documentation 2025-05-05 15:09:56 +00:00
Fabian Joswig
d6e6a435a8
 		[ci] Re-enable fail on warning for pytest pipeline. (#265) 
* [ci] Re-enable fail on warning for pytest pipeline.

* [Fix] Use sqlite3 context managers in pandas module.

* [Fix] Add closing context.
 2025-05-05 17:09:40 +02:00
Alexander Puck Neuwirth
8183ee2ef4
 		setup.py: Drop deprecated license classifiers (#264) 
Closes: #263
 2025-05-05 10:52:22 +02:00
JanNeuendorf
dcb95265ac
 		Fixed index in GEVP example (#261) 
Co-authored-by: Fabian Joswig <fjosw@users.noreply.github.com>
 2025-04-22 10:26:20 +02:00
fjosw
008179b12f Documentation updated 2025-04-22 08:20:12 +00:00