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Author SHA1 Message Date
Fabian Joswig
525c61ed20
Fix another edge case in _compute_drho (#194) 
* tests: failing test for compute_drho edge case added.

* tests: example file for failing compute_drho added.

* tests: assertion that dvalue stays the same added to compute drho test.

* fix: another edge case in computation of drho fixed.
 2023-06-02 15:04:15 +01:00
Fabian Joswig
bb43a8afb7
Fix Obs in f-strings without specifier (#190) 
* fix: Conversion of an array with ndim > 0 to a scalar deprecation fixed.

* fix: adjusted maximal value for rho in test_gamma_method_irregular.

* fix: obs in f-strings now work again when no specifier is provided.
 2023-05-31 18:07:38 +01:00
s-kuberski
34fe7f44fc
Bug fix for edge case in _compute_drho (#189) 2023-05-30 15:29:22 +01:00
Fabian Joswig
095f7c8a46
fix: adjusted maximal value for rho in test_gamma_method_irregular. (#188) 2023-05-30 14:03:01 +01:00
Fabian Joswig
dc73456759
tests: np.alltrue replaced by np.all. 2023-05-30 12:52:10 +01:00
s-kuberski
15d07de87f
fix: String conversion of Obs can now handle a dvalue that is NaN or inf (#173) 2023-05-03 16:30:59 +02:00
s-kuberski
65a9128a7d
Fix/merge idx (#172) 
* Fix: Corrected merging of idls

* Fix: Computation of drho in cases where tau_int is large compared to the chain length

* Removed unnecessary imports

* Refactor list comparisons in obs.py
 2023-04-28 18:14:51 +01:00
Fabian Joswig
be061fdc23
Feat/str format (#170) 
* feat: _format_uncertainty now accepts a significance.

* feat: __format__ now accepts significance.

* feat: explicit + sign added to format.

* fix: - option removed from format specifier.

* feat: space format added.
 2023-04-20 17:31:37 +01:00
s-kuberski
a214465413
Fix/gaps (#169) 
* fix: Fixed range detection in gamma_method

* Corrected test in dobsio

* Changed expansion paradigm in gamma_method

* Extended tests

* Updated docstrings

* Removed unnecessary intermediate variable

* Removed unnecessary code

* Fixed previously introduced bug in output in obs.details()

* Fixed previously introduced bug in window determination

* New criterion for matching gapped replica, fixed determination of w_max and fixed tau_exp analysis with gaps

* tests: split up consistency test for gamma method.

---------

Co-authored-by: Fabian Joswig <fabian.joswig@ed.ac.uk>
 2023-04-20 17:30:57 +01:00
Fabian Joswig
839d9214ed
Improved prior fit (#161) 
* refactor: merged combined fit and prior fit without breaking the
routine. Fitting with priors does not work yet.

* refactor: correlated fits without priors work now.

* refactor: prior error propagation and dof fixed.

* refactor: old prior fit implementation moved to tests.

* refactor: moved _extract_val_and_dval out of least_squares.

* refactor: comment removed.

* tests: additional tests and exceptions added.

* tests: test for constrained prior fit added.

* docs: least_squares docstring extended.

* fix: linting errors fixed.

* feat: additional if cause for fits without priors added to achieve
original speed.

* tests: test_constrained_and_prior_fit fixed.

* fix: fix array cast of least_squares dict mode.

* tests: test for lists in dict fit added.

* fix: additional asarray added in resplot.

Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>
 2023-03-07 16:15:16 +00:00
Fabian Joswig
9ef7e504a0
chore: Exceptions in Obs.__init__ made more explicit. 2023-03-02 18:54:08 +00:00
Fabian Joswig
d81d6ea0b8
fix: loop range in standard windowing procedure adjusted by gapsize 
- Test added

Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>
 2023-02-27 21:43:29 +00:00
Fabian Joswig
8bc204fc31
tests: nan obs test added. 2023-02-26 18:56:46 +00:00
Fabian Joswig
ae68e5baad
test: small bug in non overlapping test fixed. 2023-02-02 16:06:35 +00:00
Fabian Joswig
925f212e61
test: test for non overlapping configs fixed. 2023-02-02 15:22:35 +00:00
Fabian Joswig
37c59a198e
test: test for values added to non overlapping tests. 2023-02-02 15:08:22 +00:00
Fabian Joswig
e34d49d88d
test: additional test for non overlapping configurations added. 2023-02-02 14:19:16 +00:00
Fabian Joswig
79d185aa7d
test: non_overlapping tests refined. 2023-02-02 13:57:58 +00:00
Fabian Joswig
f6df9d02f5
test: added additional tests for non-overlapping configurations. 2023-02-02 13:49:40 +00:00
Fabian Joswig
b3d030abf3
fix: fixed test_correlation_intersection_of_idls 2023-02-02 13:42:15 +00:00
Fabian Joswig
2e490e56f4
fix: fixed test intersection reduce. 2023-02-02 13:35:08 +00:00
Fabian Joswig
5adc3e0c76
test: sin2 cos2 test for error propagation added. 2023-01-24 10:10:52 +00:00
Fabian Joswig
7682e29146
test: tests refactored. 2023-01-20 11:54:43 +00:00
Fabian Joswig
9ba09e6b8f
tests: gamma_method added to fuzzy test. 2023-01-20 11:49:44 +00:00
Fabian Joswig
7bb164120b
tests: fuzzy test for Obs added, test dependencies and documentation 
updated.
 2023-01-20 11:44:31 +00:00
Fabian Joswig
1297415710
test: test for alias gm added. 2023-01-05 11:56:48 +01:00
Fabian Joswig
a8a9bfbd43
tests: test added that checks that Obs.details does not throw an error 
when the error of tau is zero.
 2022-10-21 12:12:27 +01:00
Simon Kuberski
d5a766ee16 feat: Speed up covariance for irregular MC chains 2022-10-21 11:05:54 +02:00
Fabian Joswig
e3f7baa667
tests: test for gapped irregular dtauint added. 2022-10-19 12:04:49 +01:00
Simon Kuberski
89b0c37e76 fix: corrected bias correction of tau_int for irregular chains 2022-10-17 17:40:27 +02:00
Simon Kuberski
fd4c866fdd fix: bug in automatic window for irregular chains fixed 2022-10-17 14:38:23 +02:00
Fabian Joswig
b2d5263ea3 feat: hash method for Obs objects added. 2022-07-01 16:53:08 +01:00
Fabian Joswig
d922b72f3b feat: Obs.reweight method added. 2022-06-23 13:50:24 +01:00
Fabian Joswig
612e6c742b tests: matplotlib figures explicitly closed in tests 2022-06-14 14:46:45 +01:00
Fabian Joswig
5e550f4321 tests: test for smooth_eigenvalues functionality added. 2022-06-10 09:29:04 +01:00
Fabian Joswig
bb0236a556 tests: test covariance vs numpy added. 2022-05-19 14:09:05 +01:00
Fabian Joswig
9011adb0de tests: additional test addedwhich checks that merge and intersction of 
idls agree for identical idls.
 2022-05-19 13:53:33 +01:00
Fabian Joswig
60f9bb6a89 tests: Additional tests for covariance with different idls added. 2022-05-19 13:46:04 +01:00
Fabian Joswig
217d310ca4 tests: test for _intersection_idx extended. 2022-04-28 14:13:29 +01:00
Fabian Joswig
eacc9b19a3 feat: the correlation for two observables with different idls is now based on 
the intersection of two instead of the union. Tests added.
 2022-04-08 11:46:50 +01:00
Fabian Joswig
934d091249 feat: _intersection_idx and _collapse_deltas_for_merge together with 
tests added.
 2022-04-08 11:14:58 +01:00
Fabian Joswig
66997ac993 tests: test for merge_idx added. 2022-04-07 16:14:46 +01:00
Fabian Joswig
7edc617e04 tests: test for covariance of two obs with differently spaced idls 
added.
 2022-04-07 16:09:37 +01:00
Fabian Joswig
40fea8a698 Merge branch 'v2.1.0+dev' into develop 2022-03-31 11:41:25 +01:00
Fabian Joswig
cd2f361a3e tests: tests for linalg and obs extended. 2022-03-24 11:45:18 +00:00
Fabian Joswig
b72897a1bd tests: random data removed from test_gamma_method_standard_data 2022-03-08 11:02:46 +00:00
Fabian Joswig
c446898932 fix: warning for rank deficient covariance matrix is no longer called 
when covobs are involved. Test added.
 2022-03-04 17:15:29 +00:00
Fabian Joswig
ece3c5d2ba tests: additional test added. 2022-03-02 11:49:29 +00:00
Fabian Joswig
da0c43fe9a feat: correlation parameter added to covariance again, tests extended. 2022-03-01 17:46:12 +00:00
Fabian Joswig
8d93ff95f2 tests: further tests for covariance added. 2022-03-01 17:38:42 +00:00