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Author SHA1 Message Date
Fabian Joswig
78f576a35e fix: Corr.matrix_symmetric now also works if entries of the correlators 
are arrays with at least one None entry.
 2022-06-09 16:47:13 +01:00
Fabian Joswig
8a911cac61 tests: Correlated least square fit tested against jackknife resampling 2022-06-07 10:59:26 +01:00
Fabian Joswig
02ed8ecd32 build: version number bumped to 2.2.0+dev 2022-06-07 10:59:11 +01:00
Fabian Joswig
92285942ac build: Version number bumped to 2.1.1, CHANGELOG updated. 2022-06-06 15:56:19 +01:00
Fabian Joswig
155c329921 fix: bug in error propagation for correlated fits fixed. 2022-06-06 15:47:41 +01:00
Fabian Joswig
c9e0c6e208 tests: linear least_squares fit error estimation tested against jackknife resampling. 2022-06-06 15:11:03 +01:00
Fabian Joswig
6bd724715f fix: Fit_result.gamma_method can now be called with kwargs 2022-06-06 15:04:16 +01:00
Fabian Joswig
0b6b98990d build: scipy version 1 or greater required. 2022-06-01 15:03:55 +01:00
Fabian Joswig
ccb424a251 fix: hide_sigma in Corr.show now ignores the entry at 0 for the 
estimation of the plot range.
 2022-05-31 13:43:34 +01:00
Fabian Joswig
8a785601a6 build: project urls added to setup.py 2022-05-31 12:27:31 +01:00
Fabian Joswig
e89a537f7c build: version number bumped to 2.2.0+dev 2022-05-31 12:11:42 +01:00
Fabian Joswig
2fb4982988 build: version number bumped to 2.1.0 2022-05-31 11:54:26 +01:00
Fabian Joswig
4aae55d1d6 docs: Docstring for fits.least_square extended. 2022-05-31 11:51:59 +01:00
Fabian Joswig
52330b7493 docs: CHANGELOG updated. 2022-05-30 10:33:30 +01:00
Fabian Joswig
46cc5dd792 feat: The desired correlation function extracted with 
input.hadrons.read_meson_hd5 can now also be specified via a tuple of
strings indicating the desired source and sink gamma matrices.
 2022-05-29 13:58:43 +01:00
Fabian Joswig
658c2b30de feat: eigenvalue calculation in pe.covariance is not done if only the 
correlation matrix is requested.
 2022-05-27 14:17:05 +01:00
Fabian Joswig
328c564fdd feat: further improvement of inverse of cholesky decomposed correlation 
matrix.
 2022-05-27 14:00:46 +01:00
Fabian Joswig
30297a4f83 Merge branch 'develop' of github.com:fjosw/pyerrors into develop 2022-05-27 13:50:53 +01:00
Fabian Joswig
09fd1fdf60 feat: rounding errors in inversion of cholesky decomposed correlation 
matrix reduced.
 2022-05-27 13:50:19 +01:00
Fabian Joswig
f02488208a
Merge pull request #102 from fjosw/feature/covariance_idl2 
Feature/covariance idl2
 2022-05-26 15:01:35 +01:00
Fabian Joswig
e7f5961cd6 fix: bug in estimation of chisquare for correlated fit fixed, tests 
added.
 2022-05-26 13:52:05 +01:00
Fabian Joswig
ff5540d667 feat: optimized calculation of the inverse hessian for error propagation 
in fits.
 2022-05-26 10:19:39 +01:00
Fabian Joswig
e6aa679170
Merge pull request #104 from fjosw/feat/prefit 
Prefit correlated fits
 2022-05-26 09:58:37 +01:00
Fabian Joswig
6bbd88a8c1 tests: fit_corr_independent now runs for various methods. 2022-05-25 18:03:46 +01:00
Fabian Joswig
919ba68a52 feat: When least_squares is called with correlated_fit=True the routine 
first performs an uncorrelated fit in order to find appropriate starting
parameters.
 2022-05-25 17:59:29 +01:00
Fabian Joswig
48636fedb2 docs: warning about ill conditioned hessian more detailed. 2022-05-25 15:20:31 +01:00
Fabian Joswig
967ddb0ecd fix: no-autograd exception in fits works again. 2022-05-25 14:51:46 +01:00
Fabian Joswig
9ad0146d96 fix: pinv replaced by inv for inversion of hessian in fit module, exceptions and warnings added. 2022-05-25 14:32:49 +01:00
Fabian Joswig
f62581ba69 ci: workflow for caching of binder build added. 2022-05-22 12:02:33 +01:00
Fabian Joswig
9666011781 docs: reference to examples and binder link added to docs. 2022-05-22 11:38:16 +01:00
Fabian Joswig
e636e02688 docs: example and docs badges removed from README 2022-05-22 11:19:13 +01:00
Fabian Joswig
5eae3d6683 docs: start bender badge added. 2022-05-20 11:07:03 +01:00
Fabian Joswig
1054f749e9 docs: check for latex availability added to examples. 2022-05-20 11:00:52 +01:00
s-kuberski
0d434372e8
Merge pull request #103 from fjosw/fix/json_value 
Bug in json format value assignment
 2022-05-20 09:52:15 +02:00
Simon Kuberski
d7a8721ef6 bug: Fixed dobs I/O, similarly to JSON I/O 2022-05-19 19:18:53 +02:00
Fabian Joswig
e9184d8368 tests: additional tests for json format added. 2022-05-19 15:51:17 +01:00
Fabian Joswig
d531b98234 fix: fixed value assignment for json format reconstruction when the 
average of the r_values is not equal to value
 2022-05-19 15:50:47 +01:00
Fabian Joswig
5f7adf839f build: json.gz format version bumped to 1.1 2022-05-19 14:39:57 +01:00
Fabian Joswig
bb0236a556 tests: test covariance vs numpy added. 2022-05-19 14:09:05 +01:00
Fabian Joswig
9011adb0de tests: additional test addedwhich checks that merge and intersction of 
idls agree for identical idls.
 2022-05-19 13:53:33 +01:00
Fabian Joswig
60f9bb6a89 tests: Additional tests for covariance with different idls added. 2022-05-19 13:46:04 +01:00
Fabian Joswig
16d288e3b9 docs: README updated. 2022-05-19 10:43:11 +01:00
Fabian Joswig
cfe6d9c835 build: url, license and classifiers added to setup.py 2022-05-19 10:36:22 +01:00
Fabian Joswig
efc0de9e3a Merge branch 'master' into develop 2022-05-19 10:01:41 +01:00
Fabian Joswig
477573593c build: long description added to setup.py, autograd dependency changed 
to pypi version.
 2022-05-19 09:59:40 +01:00
Fabian Joswig
a799bd1f7c
Merge pull request #101 from s-kuberski/feature/json_io 
bugfix: Deltas in JSON file are now relative to o.value and not o.r_values[r_name]
 2022-05-19 09:56:58 +01:00
Simon Kuberski
9239905ee8 bugfix: Deltas in JSON file are now relative to o.value and not o.r_values[r_name] 2022-05-19 10:14:55 +02:00
Fabian Joswig
b7edd22aba
Merge pull request #100 from fjosw/feature/GEVP_return_all_vectors 
GEVP rehaul 2
 2022-05-18 16:21:08 +01:00
Fabian Joswig
5bd10cb81d docs: long_description added to setup.py 2022-05-18 12:15:28 +01:00
Fabian Joswig
f45b0aa6ec tests: coverage of Corr class improved. 2022-05-18 10:54:09 +01:00