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562 commits

Author SHA1 Message Date
Fabian Joswig
2136958fbc feat: sorted_list argument readded to Corr.GEVP with a deprecation 
warning.
 2022-05-16 13:42:12 +01:00
Fabian Joswig
eb8090a90c tests: GEVP tests extended to all three sorting variants. 2022-05-16 13:28:10 +01:00
Fabian Joswig
410d7618a0 tests: GEVP tests updated to new syntax. 2022-05-16 12:07:36 +01:00
Fabian Joswig
92b19cba9f !feat: GEVP now returns all eigenvectors instead of just the ones for 
the specified state.
 2022-05-16 11:44:02 +01:00
Fabian Joswig
ba054fa11c refactor: correlators._solve_GEVP simplified and optimized, test added. 2022-05-16 11:35:23 +01:00
fjosw
83a9ff2b4a Merge branch 'develop' into documentation 2022-05-13 15:43:52 +00:00
Fabian Joswig
10fc8b1f6e feat: GEVP not evaluated for t <= t0, additional checks added, 
Eigenvector sort method can now cope with None entries.
 2022-05-12 16:40:32 +01:00
Fabian Joswig
165e294b90 tests: test for Corr.matrix_symmetric added. 2022-05-12 16:08:42 +01:00
fjosw
f807fe5727 Merge branch 'develop' into documentation 2022-05-09 13:17:32 +00:00
Fabian Joswig
c852de0688 tests: GEVP test extendd, test case for warning when ts and Eigenvalue 
sorting are used at the same time.
 2022-05-09 14:16:46 +01:00
fjosw
b123511e0d Merge branch 'develop' into documentation 2022-05-03 08:26:44 +00:00
Fabian Joswig
d4c913ab88
 		Merge pull request #97 from s-kuberski/feature/dobs 
Feature/dobs
 2022-05-03 09:26:27 +01:00
Simon Kuberski
729a61db61 Changed some details regarding dobs implementation 2022-05-02 15:12:07 +02:00
Simon Kuberski
44b268fcf9 Merge branch 'develop' into feature/dobs 2022-05-02 14:21:25 +02:00
fjosw
56c79b7a49 Merge branch 'develop' into documentation 2022-04-29 14:34:52 +00:00
Simon Kuberski
b8e5f9dfd4 Implemented the pruning of large correlation matrices by the solution of a GEVP at early times 2022-04-28 17:33:38 +02:00
Fabian Joswig
217d310ca4 tests: test for _intersection_idx extended. 2022-04-28 14:13:29 +01:00
fjosw
eeae80b313 Merge branch 'develop' into documentation 2022-04-19 16:29:53 +00:00
Fabian Joswig
d96c5cab75
 		Merge pull request #94 from fjosw/feature/covariance_idl_first_fix 
Feature/covariance idl first fix
 2022-04-19 17:29:31 +01:00
fjosw
ce863cbe0e Merge branch 'develop' into documentation 2022-04-18 10:46:32 +00:00
Simon Kuberski
0f735c0d2d Some changes on dobs 2022-04-13 16:05:30 +02:00
Fabian Joswig
eacc9b19a3 feat: the correlation for two observables with different idls is now based on 
the intersection of two instead of the union. Tests added.
 2022-04-08 11:46:50 +01:00
Fabian Joswig
934d091249 feat: _intersection_idx and _collapse_deltas_for_merge together with 
tests added.
 2022-04-08 11:14:58 +01:00
Fabian Joswig
c9f65298b4 tests: test added that checks that correlated and uncorrelated fits give 
the same result if the input data is uncorrelated.
 2022-04-07 17:14:26 +01:00
Fabian Joswig
66997ac993 tests: test for merge_idx added. 2022-04-07 16:14:46 +01:00
Fabian Joswig
7edc617e04 tests: test for covariance of two obs with differently spaced idls 
added.
 2022-04-07 16:09:37 +01:00
fjosw
29f1757c7e Merge branch 'develop' into documentation 2022-03-31 10:46:09 +00:00
Fabian Joswig
40fea8a698 Merge branch 'v2.1.0+dev' into develop 2022-03-31 11:41:25 +01:00
Simon Kuberski
be1eeccd8e Resolved merge conflict in tests 2022-03-29 17:07:39 +02:00
fjosw
3f9b369605 Merge branch 'develop' into documentation 2022-03-24 11:45:55 +00:00
Fabian Joswig
cd2f361a3e tests: tests for linalg and obs extended. 2022-03-24 11:45:18 +00:00
fjosw
7e44f38107 Merge branch 'develop' into documentation 2022-03-09 12:26:25 +00:00
Fabian Joswig
e6813a6c8e feat: correlated_fit now throws an exception when the correlation matrix 
is ill conditioned with respect to the machine precision.

Criterion for warning for ill-conditioned covariance matrix changed to cond > sqrt(eps)

Test added.
 2022-03-09 12:24:52 +00:00
fjosw
9e47e26665 Merge branch 'develop' into documentation 2022-03-08 11:10:15 +00:00
Fabian Joswig
b72897a1bd tests: random data removed from test_gamma_method_standard_data 2022-03-08 11:02:46 +00:00
Fabian Joswig
8d0bfafaab feat: spaghetti_plot method for monitoring exceptional configurations added to Corr class, tests added. 2022-03-08 10:50:46 +00:00
fjosw
b197bdcffa Merge branch 'develop' into documentation 2022-03-07 11:59:48 +00:00
Fabian Joswig
e5d7271a2b
 		Merge pull request #85 from fjosw/fix/pinv_for_chi_exp 
Replaced inverse by the pseudo inverse in the calculation of chi_exp
 2022-03-07 11:59:31 +00:00
Fabian Joswig
99bead518c tests: additional test for expected chiqsquare and correlated fit based 
on cov obs added.
 2022-03-07 11:54:09 +00:00
fjosw
bbd37c4356 Merge branch 'develop' into documentation 2022-03-04 17:16:15 +00:00
Fabian Joswig
c446898932 fix: warning for rank deficient covariance matrix is no longer called 
when covobs are involved. Test added.
 2022-03-04 17:15:29 +00:00
fjosw
29ae383303 Merge branch 'develop' into documentation 2022-03-02 15:49:59 +00:00
Fabian Joswig
b14314b424 fix: Error handling for fits and root finding with numpy instead of autograd.numpy 
improved. Tests added.
 2022-03-02 15:49:29 +00:00
fjosw
bb98e1f487 Merge branch 'develop' into documentation 2022-03-02 12:01:20 +00:00
Fabian Joswig
ece3c5d2ba tests: additional test added. 2022-03-02 11:49:29 +00:00
Fabian Joswig
da0c43fe9a feat: correlation parameter added to covariance again, tests extended. 2022-03-01 17:46:12 +00:00
Fabian Joswig
8d93ff95f2 tests: further tests for covariance added. 2022-03-01 17:38:42 +00:00
Fabian Joswig
3796c0395f feat: computation of _covariance_element optimized, visualize option 
added to covariance, tests adjusted.
 2022-03-01 15:34:53 +00:00
Fabian Joswig
82419b7a88 feat: positive semi-definite estimator for the covariance implemented, 
fits.covariance matrix deprecated, covariance can now handle lists of
observables.
 2022-03-01 09:45:25 +00:00
Fabian Joswig
498a251072 refactor!: if clause in Obs.__init__ eliminated, empty observables need 
to be initialized with means=[] from now on.
 2022-02-28 13:43:49 +00:00