* [fix] Fixed intendation for flake8
* [feat] special module with Bessel functions added.
* [feat] init adapted.
* [tests] First test for special module added.
* [tests] Check kn special function derivative explicitly vs numerical
derivative of scipy function.
* [feat] Added remaining autograd scipy special functions to the special
module.
* [feat] Imports corrected, docstring added.
* Added the function error_gevp() to compute the gevp with statistical errors.
* Changed method name from error_gevp to error_GEVP and removed automatic gamma method
* added auto_gamma to error_GEVP
* Specified exceptions in Corr.error_GEVP
* Fixed a wrong path. It should be np.linalg.LinAlgError
* Added a test for error_GEVP
* The tests of error_gevp loads a test matrix
* Incorporated eigenvectors with uncertainties in GEVP routine
* Cleaned up GEVP routines
* Cleaned up breaking change from merge
* Released tolerance in test of GEVP
* Repaired broken GEVP test
---------
Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>
* make template
* read_sfcf_multi running with compact format
* fix append mode, norrmal tests work
* improve readability
* add simple test for multi_read
* simple multi_test works
* add first method to check sfcf param hashes
* add docstring
* simple test for o format working
* use benedict to make loops easier
* introduce python-benedict as dep
* no nice_out, less error prone, found bug in tests
* Revert "introduce python-benedict as dep"
This reverts commit 9696d68b7a.
* Revert "use benedict to make loops easier"
This reverts commit fa3987479b.
* no nice output after reverts
* [build] Added jkuhl-uni as CODEOWNER for sfcf.
* refactor: flatten internal dicts
* very small test extension
* ...flake8
* docu
* Delete second sep init
---------
Co-authored-by: Fabian Joswig <fabian.joswig@uni-muenster.de>
* feat: implemented __eq__ method for Corr class.
* feat: __eq__ method now respects None entries in correlators.
* feat: Obs can now be compared to None, __ne__ method removed as it is
not required.
* feat: Corr.__eq__ rewritten to give a per element comparison.
* tests: additional test case for correlator comparison added.
* feat: comparison now also works for padding.
* feat: vectorized gamma_method function added.
* feat: vectorized gamma method generalized to also work on other objects
like Corr or Fit_result.
* feat: alias gamma_method for vectorized gamma_method added.
* docs: example 5 updated to include vectorized gamma_method.
* docs: output of example 5 updated.
* feat: new general read_hd5 function added.
* feat: real or imaginary part can be specified in read_hd5.
* fix: spacing fixed.
* feat: Added the option to extract complex correlators in read_hd5.
* feat: matmul method added to correlator class.
* feat: corr, corr matmul and correlator matrix trace added.
* tests: tests for matmul and trace added.
* tests: slightly reduced tolerance and good guess bad guess test.
* feat: rmatmul added and __array_priority__ set.
* tests: additional tests for rmatmul added.
* tests: one more tests for rmatmul added.
* docs: docstring added to Corr.trace.
* tests: associative property test added for complex Corr matmul.
* fix: Corr.roll method now also works for correlator matrices by
explicitly specifying the axis.
Co-authored-by: Matteo Di Carlo <matteo.dicarlo93@gmail.com>
* feat: exception type for correlator trace of 1dim correlator changed.
* tests: trace N=1 exception tested.
---------
Co-authored-by: Matteo Di Carlo <matteo.dicarlo93@gmail.com>
* tests: failing test for compute_drho edge case added.
* tests: example file for failing compute_drho added.
* tests: assertion that dvalue stays the same added to compute drho test.
* fix: another edge case in computation of drho fixed.
* fix: Conversion of an array with ndim > 0 to a scalar deprecation fixed.
* fix: adjusted maximal value for rho in test_gamma_method_irregular.
* fix: obs in f-strings now work again when no specifier is provided.
* corret type clause
* add tests, changes in create_json_string
* create json-string now gives back None
* revert changes
* fix panda sql export
* add SQL test
* fixed None type export for csv and sql.gz
* move None parsing to json io
* alter regex
* revert changes
* only replace None with empty str when necessary
* fixed deserialze_df for python 3.7
* add more tesets
* fix case where gz was ignored
* hand voer gz explicitly
* replace nan by None in non-Obs columns
* moved warning to csv export, mroe tests
* only values able to be nan are put in np.isnan()
* added python float for warning
* fix: String conversion of Obs can now handle a dvalue that is NaN or inf
* Feat: Added extraction of w0/a from openQCD files
* Removed unnecessary round in w0 routine
* Improved error handling in fit_t0
* Allowed to change the reference flow time in t0 and w0 determinations.
* Added doc string to fit_t0
* Fix: Corrected merging of idls
* Fix: Computation of drho in cases where tau_int is large compared to the chain length
* Removed unnecessary imports
* Refactor list comparisons in obs.py
