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Author SHA1 Message Date
Fabian Joswig
da0c43fe9a feat: correlation parameter added to covariance again, tests extended. 2022-03-01 17:46:12 +00:00
Fabian Joswig
8d93ff95f2 tests: further tests for covariance added. 2022-03-01 17:38:42 +00:00
Fabian Joswig
3796c0395f feat: computation of _covariance_element optimized, visualize option 
added to covariance, tests adjusted.
 2022-03-01 15:34:53 +00:00
Fabian Joswig
c28d6131b1 refactor: redundant lines in _covariance_element removed. 2022-03-01 14:35:38 +00:00
Fabian Joswig
74b0f77c2d feat: covariance is now estimated from the uncorrelated correlation 
matrix rescaled by the full (correlated) errors.
 2022-03-01 14:32:13 +00:00
Fabian Joswig
82419b7a88 feat: positive semi-definite estimator for the covariance implemented, 
fits.covariance matrix deprecated, covariance can now handle lists of
observables.
 2022-03-01 09:45:25 +00:00
Fabian Joswig
498a251072 refactor!: if clause in Obs.__init__ eliminated, empty observables need 
to be initialized with means=[] from now on.
 2022-02-28 13:43:49 +00:00
Fabian Joswig
42df254288 refactor: else case for empty observables in Obs.__init__ simplified. 2022-02-28 13:26:48 +00:00
Fabian Joswig
0f749fd107 refactor: instantiation of Obs in import_jackknife slightly optimized 2022-02-28 13:25:09 +00:00
Fabian Joswig
2ba59f90c0 Version number bumped to 2.1.0+dev 2022-02-28 13:18:04 +00:00
Fabian Joswig
508fd0c8d3 Merge branch 'develop' into feature/alternative_covariance 2022-02-26 09:14:25 +00:00
Fabian Joswig
8e3e34bbea tests: test for covariance of covobs added 2022-02-26 09:13:59 +00:00
Fabian Joswig
344da7a3d9 feat: first version of strictly positive semi-definite covariance 2022-02-26 08:45:33 +00:00
Fabian Joswig
bb3ddabfd0 Merge branch 'develop' of github.com:fjosw/pyerrors into develop 2022-02-25 16:59:48 +00:00
Fabian Joswig
4498da01a9 fix: Relative minus sign for TTtilde operator added in 
hadrons.read_fourquark_hd5
 2022-02-25 16:59:20 +00:00
Fabian Joswig
c66dee6ee8
 		Merge pull request #82 from s-kuberski/feature/covobs 
feat: Check for symmetry and positive-semidefiniteness of covariance …
 2022-02-25 16:51:52 +00:00
Fabian Joswig
542296099f feat: hadrons fourquark function can now read tensor operators 2022-02-25 16:41:02 +00:00
Simon Kuberski
751d28711f feat: Check for symmetry and positive-semidefiniteness of covariance matrices in the initialization of covobs 2022-02-25 17:39:49 +01:00
Fabian Joswig
24a0df6a2a feat: a warning is now issued when an estimated covariance matrix is not 
positive semi-definite. Docstrings extended.
 2022-02-24 16:12:37 +00:00
Fabian Joswig
b960ce0e3d
 		Merge pull request #81 from s-kuberski/bugfix/idl 
_merge_idx now returns sorted lists
 2022-02-23 17:00:59 +00:00
Simon Kuberski
86b1371363 Adjusted function definitions, added test for _merge_idx 2022-02-23 17:51:12 +01:00
Simon Kuberski
3288dfd148 _merge_idx now returns sorted lists 2022-02-23 17:31:18 +01:00
Fabian Joswig
6bfeff4f27 fix: Corr.fit now explicitly checks that the provided fit range is a two 
element list.
 2022-02-23 16:23:42 +00:00
Fabian Joswig
ab8e3ce549 fix: splitting at '.' removed from auto detection of replica names in 
openQCD.read_rwms
 2022-02-23 10:26:32 +00:00
Fabian Joswig
5ee975dc44 fix: auto detection of replica names in opeqnQCD.rwms now also works 
with dots in the file names.
 2022-02-23 10:25:13 +00:00
Fabian Joswig
fe4c04adcb Version number bumped to 2.0.0-rc.2+dev 2022-02-23 10:23:09 +00:00
Fabian Joswig
7ba013cc60 Version number bumped to 2.0.0-rc.1 v2.0.0-rc.1 2022-02-22 21:41:32 +00:00
Fabian Joswig
39dff5a830 tests: tests for GEVP fixed, docstring for Corr.Eigenvalue added, typos 
fixed
 2022-02-22 21:33:04 +00:00
Fabian Joswig
7830ba7b6c
 		Merge pull request #77 from JanNeuendorf/develop 
Changes to Eigenvalue
 2022-02-22 21:26:21 +00:00
Fabian Joswig
dd3bee5635 feat: basic arithmetic operations for correlators and np.ndarrays of the 
same length work now.
 2022-02-22 15:09:06 +00:00
Fabian Joswig
1ee4aa0a59 feat: hadrons.read_mesons_hd5 now checks whether 'meson' is available 
and throws a dedicated exception.
 2022-02-22 10:53:49 +00:00
Fabian Joswig
e435907a07 docs: explanation of json.gz example slightly extended. 2022-02-22 10:15:11 +00:00
Fabian Joswig
350ccc083e docs: example for export to json.gz format added 2022-02-22 10:10:18 +00:00
Fabian Joswig
43191db72f docs: Section about Jackknife samples movded to input, typos corrected. 2022-02-22 09:57:35 +00:00
Fabian Joswig
4bb76ad04f
 		Merge pull request #79 from s-kuberski/feature/docu 
Adds the documentation of the Covobs class
 2022-02-22 09:50:45 +00:00
Fabian Joswig
69e17aaa17
 		Merge pull request #80 from s-kuberski/feature/qtop 
qtop_projection can now handle non-int charges
 2022-02-22 09:48:46 +00:00
Simon Kuberski
19d7e7639e qtop_projection can now handle non-int charges 2022-02-22 10:29:51 +01:00
Simon Kuberski
97273b33ef Added documentation of Covobs 2022-02-22 10:22:09 +01:00
Simon Kuberski
5d671257e9 Merge branch 'develop' into feature/docu 2022-02-22 09:31:22 +01:00
Simon Kuberski
5e1724d7e0 Adapted json_schema 2022-02-22 09:31:01 +01:00
JanNeuendorf
280dbb5d98 comment deleted 2022-02-22 08:25:45 +01:00
Fabian Joswig
6cfa87eb15 docs: reference to ADjson.jl added, typos corrected. 2022-02-21 18:06:35 +00:00
Fabian Joswig
03eac295b2
 		Merge pull request #78 from s-kuberski/feature/docu 
Feature/docu
 2022-02-21 17:50:18 +00:00
JanNeuendorf
c2bc1c0bed called matrix_symmetric only once 2022-02-21 18:48:20 +01:00
Simon Kuberski
8e5938ebe3 Added version number of JSON file format to 1.0 2022-02-21 18:47:47 +01:00
Simon Kuberski
0e685d552a Added reference to JSON schema 2022-02-21 18:46:56 +01:00
Simon Kuberski
5f2c8be7b2 Refined documentation, merged with develop 2022-02-21 18:43:59 +01:00
JanNeuendorf
ab960ee7ad typo 2022-02-21 18:34:19 +01:00
Simon Kuberski
04533c2c2f Documentation of the JSON format 2022-02-21 18:33:06 +01:00
JanNeuendorf
6b7aa29cdb GEVP method now uses scipy.eigh() and applies matrix_symmetric(). Eigenvalue takes the same arguments as GEVP and projects automatically. 2022-02-21 18:24:40 +01:00