Fabian Joswig
3eac9214b4
[Fix] Ruff rules and more precise Excpetion types ( #248 )
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* [Fix] Fix test for membership should be 'not in' (E713)
* [Fix] Fix module imported but unused (F401)
* [Fix] More precise Exception types in dirac, obs and correlator
2024-12-24 15:35:59 +01:00
JanNeuendorf
e1a4d0c218
Additional GEVP method with errors ( #195 )
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* Added the function error_gevp() to compute the gevp with statistical errors.
* Changed method name from error_gevp to error_GEVP and removed automatic gamma method
* added auto_gamma to error_GEVP
* Specified exceptions in Corr.error_GEVP
* Fixed a wrong path. It should be np.linalg.LinAlgError
* Added a test for error_GEVP
* The tests of error_gevp loads a test matrix
* Incorporated eigenvectors with uncertainties in GEVP routine
* Cleaned up GEVP routines
* Cleaned up breaking change from merge
* Released tolerance in test of GEVP
* Repaired broken GEVP test
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Co-authored-by: Simon Kuberski <simon.kuberski@uni-muenster.de>
2023-11-17 18:57:18 +01:00
Fabian Joswig
7f8c2ce33b
feat: added support for addition and multiplication of complex numbers ( #209 )
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to Corr objects.
2023-07-21 14:15:41 +01:00
Fabian Joswig
af28f77ec5
__eq__ method for Corr class ( #206 )
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* feat: implemented __eq__ method for Corr class.
* feat: __eq__ method now respects None entries in correlators.
* feat: Obs can now be compared to None, __ne__ method removed as it is
not required.
* feat: Corr.__eq__ rewritten to give a per element comparison.
* tests: additional test case for correlator comparison added.
* feat: comparison now also works for padding.
2023-07-19 15:06:19 +01:00
Fabian Joswig
66d5f8be24
Corr array initialization generalized ( #203 )
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* feat: corr array initialization generalized.
* feat: additional checks for three-dimensional arrays added.
* docs: Corr docstring improved.
* docs: typos corrected.
* docs: details about None padding added to Corr docstring.
2023-07-18 12:07:46 +01:00
Fabian Joswig
f1150f09c8
Matmul overloaded for correlator class. ( #199 )
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* feat: matmul method added to correlator class.
* feat: corr, corr matmul and correlator matrix trace added.
* tests: tests for matmul and trace added.
* tests: slightly reduced tolerance and good guess bad guess test.
* feat: rmatmul added and __array_priority__ set.
* tests: additional tests for rmatmul added.
* tests: one more tests for rmatmul added.
* docs: docstring added to Corr.trace.
* tests: associative property test added for complex Corr matmul.
* fix: Corr.roll method now also works for correlator matrices by
explicitly specifying the axis.
Co-authored-by: Matteo Di Carlo <matteo.dicarlo93@gmail.com>
* feat: exception type for correlator trace of 1dim correlator changed.
* tests: trace N=1 exception tested.
---------
Co-authored-by: Matteo Di Carlo <matteo.dicarlo93@gmail.com>
2023-07-17 11:48:57 +01:00
Fabian Joswig
9589820253
tests: coverage for all derivative variants extended.
2023-07-10 15:35:37 +01:00
Fabian Joswig
88fd37b241
fix: Corr.symmetric can now deal with None entries. ( #145 )
2023-01-16 16:10:19 +00:00
Fabian Joswig
b708411830
test: test for idl consistency after multiplication added.
2023-01-06 13:27:12 +01:00
Fabian Joswig
6343968404
fix: complex correlator fix extended to array valued complex
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correlators.
2022-12-20 18:13:15 +01:00
Fabian Joswig
f39a70c5a8
fix: Corr.__repr__ also works for complex correlators.
2022-12-20 17:40:41 +01:00
Fabian Joswig
f68a5d044f
tests: test for construction of complex correlator object added.
2022-12-20 17:37:37 +01:00
Fabian Joswig
23708694d6
fix: bug in Corr.spaghetti_plot fixed which appeared in connection with
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the replica separator. Test adjusted.
2022-12-07 12:23:49 +00:00
Fabian Joswig
ad1296ae47
tests: Exception for negative matrix in GEVP tested.
2022-11-30 16:47:57 +00:00
Simon Kuberski
9813f741f9
feat: added log-derivatives and symmetric effective mass
2022-10-19 16:08:31 +02:00
Fabian Joswig
2c2890d5ea
tests: padding added to is_matrix_symmetric test.
2022-07-19 12:42:45 +01:00
Fabian Joswig
4a6dfe3482
tests: test for is_matrix_symmetric added.
2022-07-19 12:31:10 +01:00
Fabian Joswig
763c759ae0
fix: Corr.m_eff can now returns None entries if the correlator has a
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sign flip. Before that the logarithm of a negative number was computed
and a warning was thrown.
2022-06-28 14:40:49 +01:00
Fabian Joswig
338bf8906a
refactor: maintainability issues in tests fixed.
2022-06-24 12:28:49 +01:00
Fabian Joswig
612e6c742b
tests: matplotlib figures explicitly closed in tests
2022-06-14 14:46:45 +01:00
Fabian Joswig
ed50240d29
fix: check for correlator None entries refactored and added to all
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elementary operations. Tests added.
2022-06-13 12:59:54 +01:00
Fabian Joswig
5359a30b97
fix: Bug in Corr.projected fixed which appears in connection with arrays
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of None as Corr entry.
2022-06-13 11:59:05 +01:00
Fabian Joswig
78f576a35e
fix: Corr.matrix_symmetric now also works if entries of the correlators
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are arrays with at least one None entry.
2022-06-09 16:47:13 +01:00
Fabian Joswig
f45b0aa6ec
tests: coverage of Corr class improved.
2022-05-18 10:54:09 +01:00
Fabian Joswig
088a7da7e6
feat: Deprecation warning for Corr.GEVP kwarg state removed,
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documentation extended.
2022-05-18 10:09:23 +01:00
Fabian Joswig
98ce553521
fix: exception for ts<=t0 generalized, tests added.
2022-05-18 10:02:56 +01:00
Fabian Joswig
2136958fbc
feat: sorted_list argument readded to Corr.GEVP with a deprecation
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warning.
2022-05-16 13:42:12 +01:00
Fabian Joswig
eb8090a90c
tests: GEVP tests extended to all three sorting variants.
2022-05-16 13:28:10 +01:00
Fabian Joswig
410d7618a0
tests: GEVP tests updated to new syntax.
2022-05-16 12:07:36 +01:00
Fabian Joswig
92b19cba9f
!feat: GEVP now returns all eigenvectors instead of just the ones for
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the specified state.
2022-05-16 11:44:02 +01:00
Fabian Joswig
ba054fa11c
refactor: correlators._solve_GEVP simplified and optimized, test added.
2022-05-16 11:35:23 +01:00
Fabian Joswig
10fc8b1f6e
feat: GEVP not evaluated for t <= t0, additional checks added,
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Eigenvector sort method can now cope with None entries.
2022-05-12 16:40:32 +01:00
Fabian Joswig
165e294b90
tests: test for Corr.matrix_symmetric added.
2022-05-12 16:08:42 +01:00
Fabian Joswig
c852de0688
tests: GEVP test extendd, test case for warning when ts and Eigenvalue
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sorting are used at the same time.
2022-05-09 14:16:46 +01:00
Simon Kuberski
b8e5f9dfd4
Implemented the pruning of large correlation matrices by the solution of a GEVP at early times
2022-04-28 17:33:38 +02:00
Fabian Joswig
8d0bfafaab
feat: spaghetti_plot method for monitoring exceptional configurations added to Corr class, tests added.
2022-03-08 10:50:46 +00:00
Fabian Joswig
6bfeff4f27
fix: Corr.fit now explicitly checks that the provided fit range is a two
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element list.
2022-02-23 16:23:42 +00:00
Fabian Joswig
39dff5a830
tests: tests for GEVP fixed, docstring for Corr.Eigenvalue added, typos
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fixed
2022-02-22 21:33:04 +00:00
Fabian Joswig
dd3bee5635
feat: basic arithmetic operations for correlators and np.ndarrays of the
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same length work now.
2022-02-22 15:09:06 +00:00
Fabian Joswig
dce7d4bec8
tests: test for corr matrix initialization with none entries added.
2022-02-18 09:16:29 +00:00
Fabian Joswig
5f86aaba4b
feat: calls to the gamma_method removed in Corr.__init__ and other
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method of the Corr class. Test adjusted by adding additional calls to
the gamma_method
2022-02-15 13:25:01 +00:00
Fabian Joswig
ca04097272
feat: thin method added to Corr class which allows to thin out a
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correlator in order suppress correlations between neighbouring entries
2022-02-09 15:32:18 +00:00
Fabian Joswig
60ad91ead6
tests: coverage in correlator increased
2022-02-08 14:43:23 +00:00
Fabian Joswig
6ae53cb575
tests: tests for correlator module corrected and extended
2022-02-08 14:31:49 +00:00
Fabian Joswig
9b63d8e2bd
Merge pull request #49 from fjosw/feature/improved_derivatives
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feat!: Implemented improved first and second derivatives for the corresponding methods of the Corr class.
2022-01-31 17:30:22 +00:00
Fabian Joswig
a729def937
feat: backward derivative implemented, additional tests for deriv
2022-01-31 12:10:38 +00:00
Fabian Joswig
fb1f2074ca
tests: Tests for matrix Corr methods added. docstrings updated
2022-01-31 11:21:16 +00:00
Fabian Joswig
8165479846
feat!: Implemented improved first and second derivatives for the
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corresponding methods of the Corr class. The parameter which
distinguishes between the variant is now a string instead of a bool
which may break current analyses.
2022-01-31 10:50:00 +00:00
Fabian Joswig
8c53d500bf
tests: additional tests for correlators with padding added
2022-01-27 17:06:49 +00:00
Fabian Joswig
50d6b0d9f5
tests: Warnings in tests fixed, conftest.py and pytest.ini removed
2022-01-20 13:49:34 +00:00