94 commits

Author	SHA1	Message	Date
Fabian Joswig	2618a2e1b1	[ci] Explicitly bump ruff action version	2026-07-27 21:59:08 +02:00
Fabian Joswig	708c623798	[ci] undo pytest change, bump ruff runner version	2026-07-27 21:56:13 +02:00
Fabian Joswig	d5162dd280	[ci] Add back ruff pyflake checks and allow 3.14t to fail	2026-07-27 21:37:15 +02:00
Fabian Joswig	5a38851c6b	[ci] Add free threaded python interpreter 3.14t to pytest action	2026-07-27 21:26:12 +02:00
Fabian Joswig	e72949b69b	[chore] Stricter ruff rules (#282) ... * [chore] Stricter ruff rules * [chore] Furture lint rules and removal of flake8 * [ci] Bump github action versions * [chore] Add additional test coverage * Revert RNG switch to np.random.default_rng() Restore use of the global np.random state in pseudo_Obs (misc.py) and the prior id generation (fits.py), keeping seed behavior unchanged. The switch to a module-local generator is out of scope for this lint-focused PR. * Silence NPY002 on intentional legacy np.random calls The RNG migration was reverted to keep np.random.seed() behavior, so add per-line noqa: NPY002 on the three legacy np.random calls instead of the Generator API. * [Fix] Fix exception messages	2026-07-06 11:04:28 +02:00
Fabian Joswig	229ea45ac7	[feat] Relax strict autograd.numpy requirement (#285) ... * [feat] Relax strict autograd.numpy requirement * [Fix] Re-impose --Werror for python 3.14 runs after new autograd release	2026-06-30 08:55:49 +02:00
Fabian Joswig	b28c2f0b6f	[Fix] Migrate to odrpack because of scipy.odr deprecation (#279) ... * [Fix] Migrate to odrpack because of scipy.odr deprecation in recent release * [Fix] Fix behaviour for rank deficient fits. Add test * [Fix] Relax test_merge_obs tolerance to machine epsilon and update ODR docstring to reference odrpack * [ci] Re-add -Werror to pytest workflow * [Fix] Handle platform-dependent rank-deficient warning in ODR tests * [Fix] Improve rank-deficient detection and bump odrpack to >=0.5 Fix incorrect ODRPACK95 info code parsing: rank deficiency is encoded in the tens digit (info // 10 % 10), not the hundreds digit. Add irank and inv_condnum to the warning message for diagnostics.	2026-04-19 19:50:36 +02:00
Fabian Joswig	23d2629801	[CI] Run pytest workflows once per week (#280)	2026-03-29 20:43:59 +02:00
Fabian Joswig	682d23604d	[Fix] Pandas 3 string type changes (#278) ... * [Fix] Pandas 3 string type handling * [ci] Temporarily remove WError because of scipy deprecation * [Fix] Address edge cases in _deserialize_df - Use pd.isna() instead of truthiness check for gzip null guard, fixing incorrect behavior when null is np.nan (which is truthy in Python) - Add bounds check to while loop to prevent IndexError when all non-null values are empty strings converted to None by regex replace * [Fix] Address edge cases in _deserialize_df and add string dtype tests - Guard against IndexError on empty DataFrames and all-null columns - Use is not None instead of pd.isna() for Obs objects in auto_gamma - Add tests for string dtype columns (with/without None, CSV and SQL) - Add test for empty DataFrame deserialization * [Fix] Avoid skipping NA-to-None conversion and guard auto_gamma against None lists - Replace continue with conditional to preserve NA-to-None conversion for all-null columns - Guard auto_gamma list lambda against None values to prevent TypeError - Add tests for all-empty-string columns and Obs lists with None + auto_gamma	2026-03-29 18:46:15 +02:00
Fabian Joswig	85ae9d7563	[chore] Remove support for python 3.9 and bump python versions in runners (#273)	2025-10-19 12:59:20 +02:00
Fabian Joswig	a600a69bb9	[ci] Add python 3.14 runners for pytest workflow (#270) ... * [ci] Add python 3.14 runners for pytest workflow * [ci] Deactivate -Werror option in pytest workflow to fix python 3.14 runner * [ci] Run tests with Werror for all python versions but for 3.14	2025-10-19 12:44:06 +02:00
Fabian Joswig	d6e6a435a8	[ci] Re-enable fail on warning for pytest pipeline. (#265) ... * [ci] Re-enable fail on warning for pytest pipeline. * [Fix] Use sqlite3 context managers in pandas module. * [Fix] Add closing context.	2025-05-05 17:09:40 +02:00
Fabian Joswig	dd4f8525f7	[CI] Add ARM runner and bump macos runner python version to 3.12 (#260)	2025-02-19 18:23:56 +01:00
Fabian Joswig	7eabd68c5f	[CI] Speed up test workflow install phase by using uv (#254) ... * [CI] Speed up install phase by using uv * [CI] Use uv in examples workflow * [CI] Fix yml syntax * [CI] Install uv into system env * [CI] Add system install for examples workflow	2025-01-10 09:36:05 +01:00
Fabian Joswig	997d360db3	[ci] Add ruff workflow (#250) ... * [ci] Add ruff workflow * [ci] Add src for ruff workflow * [ci] Rename ruff worklow * [ci] Adjust on for ruff workflow	2024-12-24 17:52:08 +01:00
Fabian Joswig	47fd72b814	[Build] Release workflow added. (#244)	2024-11-03 16:57:20 +01:00
Fabian Joswig	b43a2cbd34	[ci] Add python 3.13 to pytest workflow. (#242) ... * [ci] Add python 3.13 to pytest workflow. * [ci] Remove py and pyarrow from pytest workflow	2024-10-14 23:27:24 +02:00
Fabian Joswig	55cd782909	[Build] Remove python3.8 and add support for numpy 2 (#239) ... * [build] Remove python 3.8 and bump dependency version. * [Build] Remove python 3.8 from ci and update README python badge. * [ci] Temporarily remove -Werror from pytest workflow. * [ci] Remove python 3.8 from examples workflow. * [Build] Bump further dependency versions.	2024-08-22 21:59:07 +02:00
Fabian Joswig	0df5882d1f	[ci] Include python 3.12 in ci after new dateutils release. (#229)	2024-03-01 07:14:01 +01:00
Fabian Joswig	43383acead	[ci] Update actions to use Node.js 20 (#228)	2024-02-06 17:54:33 +01:00
Fabian Joswig	1713ea146a	[ci] Install pyarrow in pytest workflow to silence pandas warnings. (#227)	2024-01-21 12:41:37 +01:00
Fabian Joswig	b5bc687625	[ci] Removed codeql workflow.	2024-01-07 17:24:11 +01:00
Fabian Joswig	eb83ff2091	[ci] removed failing pytest 3.12 test for now.	2023-11-10 14:21:35 +01:00
Fabian Joswig	e032412ebd	[ci] Added python 3.12 to pytest and examples workflows. (#212)	2023-10-27 08:39:33 +02:00
Justus Kuhlmann	0ef8649031	Feat/read sfcf multi (#210) ... * make template * read_sfcf_multi running with compact format * fix append mode, norrmal tests work * improve readability * add simple test for multi_read * simple multi_test works * add first method to check sfcf param hashes * add docstring * simple test for o format working * use benedict to make loops easier * introduce python-benedict as dep * no nice_out, less error prone, found bug in tests * Revert "introduce python-benedict as dep" This reverts commit 9696d68b7a. * Revert "use benedict to make loops easier" This reverts commit fa3987479b. * no nice output after reverts * [build] Added jkuhl-uni as CODEOWNER for sfcf. * refactor: flatten internal dicts * very small test extension * ...flake8 * docu * Delete second sep init --------- Co-authored-by: Fabian Joswig <fabian.joswig@uni-muenster.de>	2023-10-20 19:22:55 +02:00
Fabian Joswig	2017de0ec7	ci: workflow_dispatch added to pytest and examples workflow.	2023-09-15 09:02:08 +02:00
Fabian Joswig	1b45e71e79	ci: mac-os python version fixed.	2023-06-02 16:17:28 +01:00
Fabian Joswig	cdadbd0fad	ci: windows removed from pytest workflow, mac-os python version bumped ... to 3.10	2023-06-02 16:16:04 +01:00
Fabian Joswig	5b80f44485	ci: pytest workflow updated to fail on warnings.	2023-06-02 15:48:35 +01:00
Fabian Joswig	86c060e79f	ci: python 3.7 removed from ci.	2023-05-21 17:11:38 +01:00
Fabian Joswig	a1d6b95e9a	build: bug report default title changed again.	2023-03-11 21:38:29 +00:00
Fabian Joswig	031b048fa3	build: bug report default title changed.	2023-03-11 21:35:34 +00:00
Fabian Joswig	caef8af988	build: bug report issue template added.	2023-03-11 21:30:14 +00:00
Fabian Joswig	e85d7dfde6	ci: flake8 workflow made more strict again (and CONTRIBUTING.md updated.)	2023-02-26 19:08:47 +00:00
Fabian Joswig	3b773b7b52	ci: default ignore options added to flake8 workflow and CONTRIBUTING.md ... updated.	2023-02-26 18:55:16 +00:00
Fabian Joswig	a2ed2653c6	ci: examples workflow now avoids matplotlib v3.7.0 which breaks import ... of local style files.	2023-02-19 18:42:38 +00:00
Fabian Joswig	a538be82d7	ci: example workflow fail fast false.	2023-02-19 18:30:33 +00:00
Fabian Joswig	033d8e9ac4	ci: python 3.11 added to pytest workflow, minimal version of h5py bumped ... to 3.8	2023-01-23 10:42:26 +00:00
Fabian Joswig	7bb164120b	tests: fuzzy test for Obs added, test dependencies and documentation ... updated.	2023-01-20 11:44:31 +00:00
Fabian Joswig	67568a21c2	ci: CODEOWNERS file added.	2023-01-11 15:19:21 +00:00
Fabian Joswig	8665e21dc0	ci: docs workflow updated.	2022-11-30 17:53:17 +00:00
Fabian Joswig	35da955546	build: flake8 action updated.	2022-11-30 17:50:57 +00:00
Fabian Joswig	5adf29eda9	build: github actions versions updated.	2022-11-30 17:49:01 +00:00
Fabian Joswig	e6a84678bb	ci: pylint workflow python version bumped to 3.10	2022-11-16 10:46:19 +00:00
Fabian Joswig	b8da9eaaa0	ci: binder workflow only runs for push to master.	2022-11-16 10:44:39 +00:00
Fabian Joswig	5a7a69d37f	ci: pytest workflow fixed.	2022-10-31 15:42:50 +01:00
Fabian Joswig	4c98bed2ad	ci: fail fast strategy for pytest workflow changed to false.	2022-10-19 13:03:23 +01:00
Fabian Joswig	0fadc099a9	ci: codeql workflow only triggered on push to develop and master.	2022-10-06 10:55:10 +01:00
Fabian Joswig	67d157c156	ci: examples workflow build fixed.	2022-09-29 08:58:19 +01:00
Fabian Joswig	e060a2381d	ci: codeql workflow cleaned up.	2022-09-20 11:45:13 +01:00