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simple test for o format working
This commit is contained in:
Justus Kuhlmann
parent
79db746e66
commit
eb58920e34
3 changed files with 209 additions and 35 deletions
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@ -247,15 +247,12 @@ def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=
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idl.append(rep_idl)
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# here we have found all the files we need to look into.
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if i == 0:
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if version == "0.0":
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file = path + '/' + item + '/' + sub_ls[0] + '/' + name
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else:
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if compact:
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file = path + '/' + item + '/' + sub_ls[0]
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else:
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file = path + '/' + item + '/' + sub_ls[0] + '/' + name
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if version != "0.0" and compact:
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file = path + '/' + item + '/' + sub_ls[0]
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for name in name_list:
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if version == "0.0" or not compact:
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file = path + '/' + item + '/' + sub_ls[0] + '/' + name
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for quarks in quarks_list:
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for off in noffset_list:
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for w in wf_list:
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@ -271,7 +268,7 @@ def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=
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# preparing the datastructure
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# the correlators get parsed into...
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deltas = []
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for j in range(T):
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for j in range(intern[name]["T"]):
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deltas.append([])
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internal_ret_dict[name][quarks][str(off)][str(w)][str(w2)] = deltas
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@ -285,46 +282,54 @@ def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=
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for t in range(intern[name]["T"]):
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internal_ret_dict[name][quarks][str(off)][str(w)][str(w2)][t].append(rep_deltas[name][quarks][str(off)][str(w)][str(w2)][t])
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else:
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for t in range(T):
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deltas[t].append(np.zeros(no_cfg))
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for cnfg, subitem in enumerate(sub_ls):
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with open(path + '/' + item + '/' + subitem + '/' + name) as fp:
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for k, line in enumerate(fp):
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if (k >= start_read and k < start_read + T):
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floats = list(map(float, line.split()))
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if version == "0.0":
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deltas[k - start_read][i][cnfg] = floats[im - single]
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else:
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deltas[k - start_read][i][cnfg] = floats[1 + im - single]
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for name in name_list:
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rep_data = []
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for cnfg, subitem in enumerate(sub_ls):
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for quarks in quarks_list:
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for off in noffset_list:
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for w in wf_list:
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for w2 in wf2_list:
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cfg_path = path + '/' + item + '/' + subitem
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file_data = _read_o_file(cfg_path, name, intern, version, im)
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rep_data.append(file_data)
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for quarks in quarks_list:
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for off in noffset_list:
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for w in wf_list:
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for w2 in wf2_list:
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for t in range(intern[name]["T"]):
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internal_ret_dict[name][quarks][str(off)][str(w)][str(w2)][t].append([])
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for cfg in range(no_cfg):
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internal_ret_dict[name][quarks][str(off)][str(w)][str(w2)][t][i].append(rep_data[cfg][quarks][str(off)][str(w)][str(w2)][t])
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else:
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if "files" in kwargs:
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ls = kwargs.get("files")
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else:
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for exc in ls:
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if not fnmatch.fnmatch(exc, prefix + '*.' + name):
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ls = list(set(ls) - set([exc]))
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ls = sort_names(ls)
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for name in name_list:
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if "files" in kwargs:
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ls = kwargs.get("files")
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else:
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name_ls = ls
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for exc in name_ls:
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if not fnmatch.fnmatch(exc, prefix + '*.' + name):
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name_ls = list(set(name_ls) - set([exc]))
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name_ls = sort_names(name_ls)
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for quarks in quarks_list:
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for off in noffset_list:
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for w in wf_list:
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for w2 in wf2_list:
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pattern = _make_pattern(version, name, off, w, w2, intern[name]['b2b'], quarks)
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deltas = []
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for rep, file in enumerate(ls):
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for rep, file in enumerate(name_ls):
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rep_idl = []
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filename = path + '/' + file
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T, rep_idl, rep_data = _read_append_rep(filename, pattern, intern[name]['b2b'], cfg_separator, im, single)
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if 'T' not in intern[name]:
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intern[name]['T'] = T
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T, rep_idl, rep_data = _read_append_rep(filename, pattern, intern[name]['b2b'], cfg_separator, im, intern[name]['single'])
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if rep == 0:
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for t in range(T):
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intern[name]['T'] = T
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for t in range(intern[name]['T']):
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deltas.append([])
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for t in range(T):
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for t in range(intern[name]['T']):
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deltas[t].append(rep_data[t])
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internal_ret_dict[name][quarks][str(off)][str(w)][str(w2)] = deltas
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idl.append(rep_idl)
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if name == name_list[0]:
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idl.append(rep_idl)
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if kwargs.get("check_configs") is True:
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if not silent:
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@ -358,6 +363,31 @@ def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=
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return result_dict
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def _read_o_file(cfg_path, name, intern, version, im):
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file = cfg_path + '/' + name
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return_vals = {}
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with open(file) as fp:
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lines = fp.readlines()
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for quarks in intern[name]["spec"].keys():
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return_vals[quarks] = {}
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for off in intern[name]["spec"][quarks].keys():
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return_vals[quarks][off] = {}
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for w in intern[name]["spec"][quarks][off].keys():
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return_vals[quarks][off][w] = {}
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for w2 in intern[name]["spec"][quarks][off][w].keys():
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T = intern[name]["T"]
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start_read = intern[name]["spec"][quarks][off][w][w2]["start"]
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deltas = []
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for line in lines[start_read:start_read + T]:
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floats = list(map(float, line.split()))
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if version == "0.0":
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deltas.append(floats[im - intern[name]["single"]])
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else:
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deltas.append(floats[1 + im - intern[name]["single"]])
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return_vals[quarks][off][w][w2] = deltas
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return return_vals
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def _extract_corr_type(corr_type):
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if corr_type == 'bb':
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b2b = True
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@ -82,7 +82,7 @@ def check_idl(idl, che):
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return miss_str
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def check_params(path, param_hash, prefix, param_prefix = "parameters_"):
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def check_params(path, param_hash, prefix, param_prefix="parameters_"):
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"""
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Check if, for sfcf, the parameter hashes at the end of the parameter files are in fact the expected one.
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@ -61,6 +61,45 @@ def test_o_bib(tmp_path):
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assert f_V0[2] == 683.6776090081005
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def test_simple_multi_o(tmp_path):
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build_test_environment(str(tmp_path), "o", 5, 3)
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f_V0 = sfin.read_sfcf_multi(str(tmp_path) + "/data_o", "test", ["F_V0"], quarks=["lquark lquark"], wf1_list=[0], wf2_list=[0], version="2.0", corr_type_list=["bib"], nice_output=True)
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print(f_V0)
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assert len(f_V0) == 3
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assert list(f_V0[0].shape.keys()) == ["test_|r0", "test_|r1", "test_|r2"]
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assert f_V0[0] == 683.6776090085115
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assert f_V0[1] == 661.3188585582334
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assert f_V0[2] == 683.6776090081005
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def test_dict_multi_o(tmp_path):
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build_test_environment(str(tmp_path), "o", 5, 3)
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corrs = sfin.read_sfcf_multi(str(tmp_path) + "/data_o", "test",
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["F_V0", "f_A", "f_1"], quarks_list=["lquark lquark"],
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wf_list=[0], wf2_list=[0], version="2.0",
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corr_type_list=["bib", "bi", "bb"], nice_output=False)
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print(corrs)
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f_1 = corrs["f_1"]['lquark lquark']['0']['0']['0']
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f_A = corrs["f_A"]['lquark lquark']['0']['0']['0']
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f_V0 = corrs["F_V0"]['lquark lquark']['0']['0']['0']
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assert len(f_1) == 1
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assert list(f_1[0].shape.keys()) == ["test_|r0", "test_|r1", "test_|r2"]
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assert f_1[0].value == 351.1941525454502
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assert len(f_A) == 3
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assert list(f_A[0].shape.keys()) == ["test_|r0", "test_|r1", "test_|r2"]
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assert f_A[0].value == 65.4711887279723
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assert f_A[1].value == 1.0447210336915187
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assert f_A[2].value == -41.025094911185185
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assert len(f_V0) == 3
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assert list(f_V0[0].shape.keys()) == ["test_|r0", "test_|r1", "test_|r2"]
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assert f_V0[0] == 683.6776090085115
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assert f_V0[1] == 661.3188585582334
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assert f_V0[2] == 683.6776090081005
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def test_c_bb(tmp_path):
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build_test_environment(str(tmp_path), "c", 5, 3)
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f_1 = sfin.read_sfcf(str(tmp_path) + "/data_c", "data_c", "f_1", quarks="lquark lquark", wf=0, wf2=0, version="2.0c", corr_type="bb")
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@ -131,6 +170,72 @@ def test_dict_multi_c(tmp_path):
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assert f_V0[2] == 683.6776090081005
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def test_dict_multi_wf_c(tmp_path):
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build_test_environment(str(tmp_path), "c", 5, 3)
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corrs = sfin.read_sfcf_multi(str(tmp_path) + "/data_c", "data_c",
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["F_V0", "f_A", "f_1"], quarks_list=["lquark lquark"],
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wf_list=[0, 1], wf2_list=[0, 1], version="2.0c",
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corr_type_list=["bib", "bi", "bb"], nice_output=False)
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rep_names = ["data_c_|r0", "data_c_|r1", "data_c_|r2"]
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f_1_00 = corrs["f_1"]['lquark lquark']['0']['0']['0']
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f_1_01 = corrs["f_1"]['lquark lquark']['0']['0']['1']
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f_1_10 = corrs["f_1"]['lquark lquark']['0']['1']['0']
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f_1_11 = corrs["f_1"]['lquark lquark']['0']['1']['1']
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assert len(f_1_00) == 1
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assert list(f_1_00[0].shape.keys()) == rep_names
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assert f_1_00[0].value == 351.1941525454502
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assert len(f_1_01) == 1
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assert list(f_1_01[0].shape.keys()) == rep_names
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assert f_1_01[0].value == 351.20703575855345
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assert len(f_1_10) == 1
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assert list(f_1_10[0].shape.keys()) == rep_names
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assert f_1_10[0].value == 351.20703575855515
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assert len(f_1_11) == 1
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assert list(f_1_11[0].shape.keys()) == rep_names
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assert f_1_11[0].value == 351.22001235609065
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f_A = corrs["f_A"]['lquark lquark']['0']['0']['0']
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assert len(f_A) == 3
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assert list(f_A[0].shape.keys()) == rep_names
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assert f_A[0].value == 65.4711887279723
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assert f_A[1].value == 1.0447210336915187
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assert f_A[2].value == -41.025094911185185
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f_V0_00 = corrs["F_V0"]['lquark lquark']['0']['0']['0']
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f_V0_01 = corrs["F_V0"]['lquark lquark']['0']['0']['1']
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f_V0_10 = corrs["F_V0"]['lquark lquark']['0']['1']['0']
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f_V0_11 = corrs["F_V0"]['lquark lquark']['0']['1']['1']
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assert len(f_V0_00) == 3
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assert list(f_V0_00[0].shape.keys()) == rep_names
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assert f_V0_00[0].value == 683.6776090085115
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assert f_V0_00[1].value == 661.3188585582334
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assert f_V0_00[2].value == 683.6776090081005
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assert len(f_V0_01) == 3
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assert list(f_V0_01[0].shape.keys()) == rep_names
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assert f_V0_01[0].value == 683.7028316879306
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assert f_V0_01[1].value == 661.3432563640756
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assert f_V0_01[2].value == 683.7028316875197
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assert len(f_V0_10) == 3
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assert list(f_V0_10[0].shape.keys()) == rep_names
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assert f_V0_10[0].value == 683.7028316879289
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assert f_V0_10[1].value == 661.343256364074
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assert f_V0_10[2].value == 683.702831687518
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assert len(f_V0_11) == 3
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assert list(f_V0_11[0].shape.keys()) == rep_names
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assert f_V0_11[0].value == 683.7280552978792
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assert f_V0_11[1].value == 661.3676550700158
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assert f_V0_11[2].value == 683.7280552974681
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def test_a_bb(tmp_path):
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build_test_environment(str(tmp_path), "a", 5, 3)
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f_1 = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_1", quarks="lquark lquark", wf=0, wf2=0, version="2.0a", corr_type="bb")
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@ -162,6 +267,45 @@ def test_a_bib(tmp_path):
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assert f_V0[2] == 683.6776090081005
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def test_simple_multi_a(tmp_path):
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build_test_environment(str(tmp_path), "a", 5, 3)
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f_V0 = sfin.read_sfcf_multi(str(tmp_path) + "/data_a", "data_a", ["F_V0"], quarks=["lquark lquark"], wf1_list=[0], wf2_list=[0], version="2.0a", corr_type_list=["bib"], nice_output=True)
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print(f_V0)
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assert len(f_V0) == 3
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assert list(f_V0[0].shape.keys()) == ["data_a_|r0", "data_a_|r1", "data_a_|r2"]
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assert f_V0[0] == 683.6776090085115
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assert f_V0[1] == 661.3188585582334
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assert f_V0[2] == 683.6776090081005
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def test_dict_multi_a(tmp_path):
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build_test_environment(str(tmp_path), "a", 5, 3)
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corrs = sfin.read_sfcf_multi(str(tmp_path) + "/data_a", "data_a",
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["F_V0", "f_A", "f_1"], quarks_list=["lquark lquark"],
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wf_list=[0], wf2_list=[0], version="2.0a",
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corr_type_list=["bib", "bi", "bb"], nice_output=False)
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print(corrs)
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f_1 = corrs["f_1"]['lquark lquark']['0']['0']['0']
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f_A = corrs["f_A"]['lquark lquark']['0']['0']['0']
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f_V0 = corrs["F_V0"]['lquark lquark']['0']['0']['0']
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assert len(f_1) == 1
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assert list(f_1[0].shape.keys()) == ["data_a_|r0", "data_a_|r1", "data_a_|r2"]
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assert f_1[0].value == 351.1941525454502
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assert len(f_A) == 3
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assert list(f_A[0].shape.keys()) == ["data_a_|r0", "data_a_|r1", "data_a_|r2"]
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assert f_A[0].value == 65.4711887279723
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assert f_A[1].value == 1.0447210336915187
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assert f_A[2].value == -41.025094911185185
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assert len(f_V0) == 3
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assert list(f_V0[0].shape.keys()) == ["data_a_|r0", "data_a_|r1", "data_a_|r2"]
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assert f_V0[0] == 683.6776090085115
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assert f_V0[1] == 661.3188585582334
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assert f_V0[2] == 683.6776090081005
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def test_find_corr():
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pattern = 'name ' + "f_A" + '\nquarks ' + "lquark lquark" + '\noffset ' + str(0) + '\nwf ' + str(0)
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start_read, T = sfin._find_correlator("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1", "2.0c", pattern, False)
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@ -177,7 +321,7 @@ def test_find_corr():
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sfin._find_correlator("tests/data/sfcf_test/broken_data_c/data_c_r0/data_c_r0_n1", "2.0c", pattern, False)
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def test_read_compact_file(tmp_path):
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def test_read_compact_file():
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rep_path = "tests/data/sfcf_test/broken_data_c/data_c_r0/"
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config_file = "data_c_r0_n1"
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start_read = 469
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