[chore] Stricter ruff rules (#282)

* [chore] Stricter ruff rules

* [chore] Furture lint rules and removal of flake8

* [ci] Bump github action versions

* [chore] Add additional test coverage

* Revert RNG switch to np.random.default_rng()

Restore use of the global np.random state in pseudo_Obs (misc.py) and the
prior id generation (fits.py), keeping seed behavior unchanged. The switch
to a module-local generator is out of scope for this lint-focused PR.

* Silence NPY002 on intentional legacy np.random calls

The RNG migration was reverted to keep np.random.seed() behavior, so add
per-line noqa: NPY002 on the three legacy np.random calls instead of the
Generator API.

* [Fix] Fix exception messages

.github/workflows/pytest.yml

@@ -26,7 +26,7 @@ jobs:
 
     steps:
       - name: Checkout source
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Setup python
         uses: actions/setup-python@v5