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Documentation updated
This commit is contained in:
fjosw
parent
c497f1a0cc
commit
dc5dbfa05a
2 changed files with 38 additions and 34 deletions
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@ -918,7 +918,7 @@
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</span><span id="L-827"><a href="#L-827"><span class="linenos">827</span></a> <span class="k">return</span> <span class="n">rs</span>
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</span><span id="L-828"><a href="#L-828"><span class="linenos">828</span></a>
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</span><span id="L-829"><a href="#L-829"><span class="linenos">829</span></a>
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</span><span id="L-830"><a href="#L-830"><span class="linenos">830</span></a><span class="k">def</span> <span class="nf">write_dobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">'dobs v1.0'</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="p">{},</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
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</span><span id="L-830"><a href="#L-830"><span class="linenos">830</span></a><span class="k">def</span> <span class="nf">write_dobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">'dobs v1.0'</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
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</span><span id="L-831"><a href="#L-831"><span class="linenos">831</span></a> <span class="sd">"""Export a list of Obs or structures containing Obs to a .xml.gz file</span>
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</span><span id="L-832"><a href="#L-832"><span class="linenos">832</span></a><span class="sd"> according to the Zeuthen dobs format.</span>
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</span><span id="L-833"><a href="#L-833"><span class="linenos">833</span></a>
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@ -948,22 +948,24 @@
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</span><span id="L-857"><a href="#L-857"><span class="linenos">857</span></a><span class="sd"> gz : bool</span>
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</span><span id="L-858"><a href="#L-858"><span class="linenos">858</span></a><span class="sd"> If True, the output is a gzipped XML. If False, the output is a XML file.</span>
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</span><span id="L-859"><a href="#L-859"><span class="linenos">859</span></a><span class="sd"> """</span>
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</span><span id="L-860"><a href="#L-860"><span class="linenos">860</span></a>
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</span><span id="L-861"><a href="#L-861"><span class="linenos">861</span></a> <span class="n">dobsstring</span> <span class="o">=</span> <span class="n">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">who</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="n">enstags</span><span class="p">)</span>
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</span><span id="L-860"><a href="#L-860"><span class="linenos">860</span></a> <span class="k">if</span> <span class="n">enstags</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
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</span><span id="L-861"><a href="#L-861"><span class="linenos">861</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
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</span><span id="L-862"><a href="#L-862"><span class="linenos">862</span></a>
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</span><span id="L-863"><a href="#L-863"><span class="linenos">863</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.xml'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-864"><a href="#L-864"><span class="linenos">864</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.xml'</span>
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</span><span id="L-865"><a href="#L-865"><span class="linenos">865</span></a>
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</span><span id="L-866"><a href="#L-866"><span class="linenos">866</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
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</span><span id="L-867"><a href="#L-867"><span class="linenos">867</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-868"><a href="#L-868"><span class="linenos">868</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
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</span><span id="L-869"><a href="#L-869"><span class="linenos">869</span></a>
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</span><span id="L-870"><a href="#L-870"><span class="linenos">870</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span>
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</span><span id="L-871"><a href="#L-871"><span class="linenos">871</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">))</span>
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</span><span id="L-872"><a href="#L-872"><span class="linenos">872</span></a> <span class="k">else</span><span class="p">:</span>
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</span><span id="L-873"><a href="#L-873"><span class="linenos">873</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span>
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</span><span id="L-874"><a href="#L-874"><span class="linenos">874</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="p">)</span>
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</span><span id="L-875"><a href="#L-875"><span class="linenos">875</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
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</span><span id="L-863"><a href="#L-863"><span class="linenos">863</span></a> <span class="n">dobsstring</span> <span class="o">=</span> <span class="n">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">who</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="n">enstags</span><span class="p">)</span>
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</span><span id="L-864"><a href="#L-864"><span class="linenos">864</span></a>
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</span><span id="L-865"><a href="#L-865"><span class="linenos">865</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.xml'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-866"><a href="#L-866"><span class="linenos">866</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.xml'</span>
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</span><span id="L-867"><a href="#L-867"><span class="linenos">867</span></a>
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</span><span id="L-868"><a href="#L-868"><span class="linenos">868</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
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</span><span id="L-869"><a href="#L-869"><span class="linenos">869</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-870"><a href="#L-870"><span class="linenos">870</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
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</span><span id="L-871"><a href="#L-871"><span class="linenos">871</span></a>
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</span><span id="L-872"><a href="#L-872"><span class="linenos">872</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span>
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</span><span id="L-873"><a href="#L-873"><span class="linenos">873</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">))</span>
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</span><span id="L-874"><a href="#L-874"><span class="linenos">874</span></a> <span class="k">else</span><span class="p">:</span>
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</span><span id="L-875"><a href="#L-875"><span class="linenos">875</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span>
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</span><span id="L-876"><a href="#L-876"><span class="linenos">876</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="p">)</span>
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</span><span id="L-877"><a href="#L-877"><span class="linenos">877</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
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</span></pre></div>
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@ -1813,13 +1815,13 @@ Otherwise, the ensemble name is used.</li>
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<div class="attr function">
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<span class="def">def</span>
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<span class="name">write_dobs</span><span class="signature pdoc-code multiline">(<span class="param"> <span class="n">obsl</span>,</span><span class="param"> <span class="n">fname</span>,</span><span class="param"> <span class="n">name</span>,</span><span class="param"> <span class="n">spec</span><span class="o">=</span><span class="s1">'dobs v1.0'</span>,</span><span class="param"> <span class="n">origin</span><span class="o">=</span><span class="s1">''</span>,</span><span class="param"> <span class="n">symbol</span><span class="o">=</span><span class="p">[]</span>,</span><span class="param"> <span class="n">who</span><span class="o">=</span><span class="kc">None</span>,</span><span class="param"> <span class="n">enstags</span><span class="o">=</span><span class="p">{}</span>,</span><span class="param"> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span></span>)</span>
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<span class="name">write_dobs</span><span class="signature pdoc-code multiline">(<span class="param"> <span class="n">obsl</span>,</span><span class="param"> <span class="n">fname</span>,</span><span class="param"> <span class="n">name</span>,</span><span class="param"> <span class="n">spec</span><span class="o">=</span><span class="s1">'dobs v1.0'</span>,</span><span class="param"> <span class="n">origin</span><span class="o">=</span><span class="s1">''</span>,</span><span class="param"> <span class="n">symbol</span><span class="o">=</span><span class="p">[]</span>,</span><span class="param"> <span class="n">who</span><span class="o">=</span><span class="kc">None</span>,</span><span class="param"> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span>,</span><span class="param"> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span></span>)</span>
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<label class="view-source-button" for="write_dobs-view-source"><span>View Source</span></label>
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</div>
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<a class="headerlink" href="#write_dobs"></a>
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<div class="pdoc-code codehilite"><pre><span></span><span id="write_dobs-831"><a href="#write_dobs-831"><span class="linenos">831</span></a><span class="k">def</span> <span class="nf">write_dobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">'dobs v1.0'</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="p">{},</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
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<div class="pdoc-code codehilite"><pre><span></span><span id="write_dobs-831"><a href="#write_dobs-831"><span class="linenos">831</span></a><span class="k">def</span> <span class="nf">write_dobs</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="o">=</span><span class="s1">'dobs v1.0'</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">symbol</span><span class="o">=</span><span class="p">[],</span> <span class="n">who</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
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</span><span id="write_dobs-832"><a href="#write_dobs-832"><span class="linenos">832</span></a> <span class="sd">"""Export a list of Obs or structures containing Obs to a .xml.gz file</span>
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</span><span id="write_dobs-833"><a href="#write_dobs-833"><span class="linenos">833</span></a><span class="sd"> according to the Zeuthen dobs format.</span>
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</span><span id="write_dobs-834"><a href="#write_dobs-834"><span class="linenos">834</span></a>
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@ -1849,22 +1851,24 @@ Otherwise, the ensemble name is used.</li>
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</span><span id="write_dobs-858"><a href="#write_dobs-858"><span class="linenos">858</span></a><span class="sd"> gz : bool</span>
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</span><span id="write_dobs-859"><a href="#write_dobs-859"><span class="linenos">859</span></a><span class="sd"> If True, the output is a gzipped XML. If False, the output is a XML file.</span>
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</span><span id="write_dobs-860"><a href="#write_dobs-860"><span class="linenos">860</span></a><span class="sd"> """</span>
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</span><span id="write_dobs-861"><a href="#write_dobs-861"><span class="linenos">861</span></a>
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</span><span id="write_dobs-862"><a href="#write_dobs-862"><span class="linenos">862</span></a> <span class="n">dobsstring</span> <span class="o">=</span> <span class="n">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">who</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="n">enstags</span><span class="p">)</span>
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</span><span id="write_dobs-861"><a href="#write_dobs-861"><span class="linenos">861</span></a> <span class="k">if</span> <span class="n">enstags</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
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</span><span id="write_dobs-862"><a href="#write_dobs-862"><span class="linenos">862</span></a> <span class="n">enstags</span> <span class="o">=</span> <span class="p">{}</span>
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</span><span id="write_dobs-863"><a href="#write_dobs-863"><span class="linenos">863</span></a>
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||||
</span><span id="write_dobs-864"><a href="#write_dobs-864"><span class="linenos">864</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.xml'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="write_dobs-865"><a href="#write_dobs-865"><span class="linenos">865</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.xml'</span>
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</span><span id="write_dobs-866"><a href="#write_dobs-866"><span class="linenos">866</span></a>
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||||
</span><span id="write_dobs-867"><a href="#write_dobs-867"><span class="linenos">867</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
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</span><span id="write_dobs-868"><a href="#write_dobs-868"><span class="linenos">868</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="write_dobs-869"><a href="#write_dobs-869"><span class="linenos">869</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
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</span><span id="write_dobs-870"><a href="#write_dobs-870"><span class="linenos">870</span></a>
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||||
</span><span id="write_dobs-871"><a href="#write_dobs-871"><span class="linenos">871</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span>
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||||
</span><span id="write_dobs-872"><a href="#write_dobs-872"><span class="linenos">872</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">))</span>
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||||
</span><span id="write_dobs-873"><a href="#write_dobs-873"><span class="linenos">873</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
</span><span id="write_dobs-874"><a href="#write_dobs-874"><span class="linenos">874</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span>
|
||||
</span><span id="write_dobs-875"><a href="#write_dobs-875"><span class="linenos">875</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="p">)</span>
|
||||
</span><span id="write_dobs-876"><a href="#write_dobs-876"><span class="linenos">876</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
||||
</span><span id="write_dobs-864"><a href="#write_dobs-864"><span class="linenos">864</span></a> <span class="n">dobsstring</span> <span class="o">=</span> <span class="n">create_dobs_string</span><span class="p">(</span><span class="n">obsl</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">spec</span><span class="p">,</span> <span class="n">origin</span><span class="p">,</span> <span class="n">symbol</span><span class="p">,</span> <span class="n">who</span><span class="p">,</span> <span class="n">enstags</span><span class="o">=</span><span class="n">enstags</span><span class="p">)</span>
|
||||
</span><span id="write_dobs-865"><a href="#write_dobs-865"><span class="linenos">865</span></a>
|
||||
</span><span id="write_dobs-866"><a href="#write_dobs-866"><span class="linenos">866</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.xml'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||
</span><span id="write_dobs-867"><a href="#write_dobs-867"><span class="linenos">867</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.xml'</span>
|
||||
</span><span id="write_dobs-868"><a href="#write_dobs-868"><span class="linenos">868</span></a>
|
||||
</span><span id="write_dobs-869"><a href="#write_dobs-869"><span class="linenos">869</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
|
||||
</span><span id="write_dobs-870"><a href="#write_dobs-870"><span class="linenos">870</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||
</span><span id="write_dobs-871"><a href="#write_dobs-871"><span class="linenos">871</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
||||
</span><span id="write_dobs-872"><a href="#write_dobs-872"><span class="linenos">872</span></a>
|
||||
</span><span id="write_dobs-873"><a href="#write_dobs-873"><span class="linenos">873</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span>
|
||||
</span><span id="write_dobs-874"><a href="#write_dobs-874"><span class="linenos">874</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">))</span>
|
||||
</span><span id="write_dobs-875"><a href="#write_dobs-875"><span class="linenos">875</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
</span><span id="write_dobs-876"><a href="#write_dobs-876"><span class="linenos">876</span></a> <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'w'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span>
|
||||
</span><span id="write_dobs-877"><a href="#write_dobs-877"><span class="linenos">877</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">dobsstring</span><span class="p">)</span>
|
||||
</span><span id="write_dobs-878"><a href="#write_dobs-878"><span class="linenos">878</span></a> <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
||||
</span></pre></div>
|
||||
|
||||
|
||||
|
|
|
|||
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