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flake8 formatting improvements
This commit is contained in:
Fabian Joswig
parent
863ce6ae73
commit
d4eaf3f48a
3 changed files with 27 additions and 34 deletions
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@ -53,7 +53,7 @@ def read_pbp(path, prefix, **kwargs):
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else:
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r_stop = [None] * replica
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print('Read <bar{psi}\psi> from', prefix[:-1], ',', replica, 'replica', end='')
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print(r'Read <bar{psi}\psi> from', prefix[:-1], ',', replica, 'replica', end='')
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print_err = 0
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if 'print_err' in kwargs:
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@ -64,10 +64,10 @@ def read_pbp(path, prefix, **kwargs):
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for rep in range(replica):
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tmp_array = []
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with open(path+ '/' + ls[rep], 'rb') as fp:
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with open(path + '/' + ls[rep], 'rb') as fp:
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#header
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t = fp.read(4) # number of reweighting factors
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# header
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t = fp.read(4) # number of reweighting factors
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if rep == 0:
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nrw = struct.unpack('i', t)[0]
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for k in range(nrw):
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@ -85,7 +85,7 @@ def read_pbp(path, prefix, **kwargs):
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for i in range(nrw):
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t = fp.read(4)
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nfct.append(struct.unpack('i', t)[0])
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print('nfct: ', nfct) # Hasenbusch factor, 1 for rat reweighting
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print('nfct: ', nfct) # Hasenbusch factor, 1 for rat reweighting
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else:
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for i in range(nrw):
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nfct.append(1)
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@ -95,7 +95,7 @@ def read_pbp(path, prefix, **kwargs):
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t = fp.read(4)
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nsrc.append(struct.unpack('i', t)[0])
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#body
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# body
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while 0 < 1:
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t = fp.read(4)
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if len(t) < 4:
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@ -118,7 +118,7 @@ def read_pbp(path, prefix, **kwargs):
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for k in range(nrw):
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deltas[k].append(tmp_array[k][r_start[rep]:r_stop[rep]])
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print(',', nrw, '<bar{psi}\psi> with', nsrc, 'sources')
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print(',', nrw, r'<bar{psi}\psi> with', nsrc, 'sources')
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result = []
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for t in range(nrw):
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result.append(Obs(deltas[t], [(w.split('.'))[0] for w in ls]))
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@ -23,8 +23,7 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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r_stop -- list which contains the last config to be read for each replicum
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postfix -- postfix of the file to read, e.g. '.ms1' for openQCD-files
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"""
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#oqcd versions implemented in this method
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known_oqcd_versions = ['1.4','1.6','2.0']
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known_oqcd_versions = ['1.4', '1.6', '2.0']
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if not (version in known_oqcd_versions):
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raise Exception('Unknown openQCD version defined!')
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print("Working with openQCD version " + version)
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@ -42,12 +41,10 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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# Exclude files with different names
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for exc in ls:
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if not fnmatch.fnmatch(exc, prefix + '*'+postfix+'.dat'):
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if not fnmatch.fnmatch(exc, prefix + '*' + postfix + '.dat'):
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ls = list(set(ls) - set([exc]))
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if len(ls) > 1:
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ls.sort(key=lambda x: int(re.findall(r'\d+', x[len(prefix):])[0]))
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#ls = fnames
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#print(ls)
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replica = len(ls)
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if 'r_start' in kwargs:
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@ -77,18 +74,18 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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for rep in range(replica):
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tmp_array = []
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with open(path+ '/' + ls[rep], 'rb') as fp:
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with open(path + '/' + ls[rep], 'rb') as fp:
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#header
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t = fp.read(4) # number of reweighting factors
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# header
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t = fp.read(4) # number of reweighting factors
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if rep == 0:
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nrw = struct.unpack('i', t)[0]
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if version == '2.0':
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nrw = int(nrw/2)
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nrw = int(nrw / 2)
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for k in range(nrw):
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deltas.append([])
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else:
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if ((nrw != struct.unpack('i', t)[0] and (not verion == '2.0')) or (nrw != struct.unpack('i', t)[0]/2 and version == '2.0')):# little weird if-clause due to the /2 operation needed.
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if ((nrw != struct.unpack('i', t)[0] and (not version == '2.0')) or (nrw != struct.unpack('i', t)[0] / 2 and version == '2.0')): # little weird if-clause due to the /2 operation needed.
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raise Exception('Error: different number of reweighting factors for replicum', rep)
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for k in range(nrw):
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@ -96,11 +93,11 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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# This block is necessary for openQCD1.6 and openQCD2.0 ms1 files
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nfct = []
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if version in ['1.6','2.0']:
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if version in ['1.6', '2.0']:
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for i in range(nrw):
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t = fp.read(4)
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nfct.append(struct.unpack('i', t)[0])
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#print('nfct: ', nfct) # Hasenbusch factor, 1 for rat reweighting
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# print('nfct: ', nfct) # Hasenbusch factor, 1 for rat reweighting
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else:
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for i in range(nrw):
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nfct.append(1)
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@ -109,11 +106,11 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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for i in range(nrw):
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t = fp.read(4)
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nsrc.append(struct.unpack('i', t)[0])
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if version is '2.0':
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if version == '2.0':
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if not struct.unpack('i', fp.read(4))[0] == 0:
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print('something is wrong!')
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#body
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# body
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while 0 < 1:
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t = fp.read(4)
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if len(t) < 4:
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@ -132,7 +129,7 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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print(config_no, i, j, np.mean(np.exp(-np.asarray(tmp_rw[j]))), np.std(np.exp(-np.asarray(tmp_rw[j]))))
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print('Sources:', np.exp(-np.asarray(tmp_rw[j])))
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print('Partial factor:', tmp_nfct)
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elif version is '1.6' or version is '1.4':
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elif version == '1.6' or version == '1.4':
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tmp_nfct = 1.0
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for j in range(nfct[i]):
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t = fp.read(8 * nsrc[i])
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@ -151,7 +148,7 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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print(',', nrw, 'reweighting factors with', nsrc, 'sources')
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result = []
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for t in range(nrw):
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if names == None:
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if names is None:
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result.append(Obs(deltas[t], [w.split(".")[0] for w in ls]))
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else:
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print(names)
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@ -159,8 +156,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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return result
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def extract_t0(path, prefix, dtr_read, xmin, spatial_extent, fit_range=5, **kwargs):
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"""Extract t0 from given .ms.dat files. Returns t0 as Obs.
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@ -290,16 +285,16 @@ def _parse_array_openQCD2(d, n, size, wa, quadrupel=False):
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arr = []
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if d == 2:
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tot = 0
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for i in range(n[d-1]-1):
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for i in range(n[d - 1] - 1):
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if quadrupel:
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tmp = wa[tot:n[d-1]]
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tmp = wa[tot:n[d - 1]]
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tmp2 = []
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for i in range(len(tmp)):
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if i % 2 == 0:
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tmp2.append(tmp[i])
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arr.append(tmp2)
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else:
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arr.append(np.asarray(wa[tot:n[d-1]]))
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arr.append(np.asarray(wa[tot:n[d - 1]]))
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return arr
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@ -312,7 +307,7 @@ def _parse_array_openQCD2(d, n, size, wa, quadrupel=False):
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def _read_array_openQCD2(fp):
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t = fp.read(4)
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d = struct.unpack('i', t)[0]
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t = fp.read(4*d)
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t = fp.read(4 * d)
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n = struct.unpack('%di' % (d), t)
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t = fp.read(4)
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size = struct.unpack('i', t)[0]
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@ -325,10 +320,10 @@ def _read_array_openQCD2(fp):
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else:
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print('Type not known!')
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m = n[0]
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for i in range(1,d):
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for i in range(1, d):
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m *= n[i]
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t = fp.read(m*size)
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t = fp.read(m * size)
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tmp = struct.unpack('%d%s' % (m, types), t)
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arr = _parse_array_openQCD2(d, n, size, tmp, quadrupel=True)
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@ -134,9 +134,7 @@ def read_sfcf_c(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0, **kwarg
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else:
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b2b = 0
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read = 0
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T = 0
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start = 0
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ls = []
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for (dirpath, dirnames, filenames) in os.walk(path):
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ls.extend(dirnames)
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@ -189,7 +187,7 @@ def read_sfcf_c(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0, **kwarg
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match = re.search(pattern, content)
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if match:
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start_read = content.count('\n', 0, match.start()) + 5 + b2b
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end_match = re.search('\n\s*\n', content[match.start():])
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end_match = re.search(r'\n\s*\n', content[match.start():])
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T = content[match.start():].count('\n', 0, end_match.start()) - 4 - b2b
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assert T > 0
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print(T, 'entries, starting to read in line', start_read)
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