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Documentation updated
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fjosw
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2 changed files with 686 additions and 661 deletions
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@ -572,277 +572,276 @@
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</span><span id="L-479"><a href="#L-479"><span class="linenos">479</span></a><span class="sd"> result : dict</span>
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</span><span id="L-479"><a href="#L-479"><span class="linenos">479</span></a><span class="sd"> result : dict</span>
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</span><span id="L-480"><a href="#L-480"><span class="linenos">480</span></a><span class="sd"> if full_output=True</span>
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</span><span id="L-480"><a href="#L-480"><span class="linenos">480</span></a><span class="sd"> if full_output=True</span>
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</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a><span class="sd"> """</span>
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</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a><span class="sd"> """</span>
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</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a>
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</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
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</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
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</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a>
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</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a>
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</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a>
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</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a>
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</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a><span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
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</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a><span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
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</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a><span class="w"> </span><span class="sd">"""Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
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</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a><span class="w"> </span><span class="sd">"""Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
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</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a>
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</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a>
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</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
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</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
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</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a><span class="sd"> If the list contains only one element, it is unpacked from the list.</span>
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</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a><span class="sd"> If the list contains only one element, it is unpacked from the list.</span>
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</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a>
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</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a>
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</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a><span class="sd"> Parameters</span>
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</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a><span class="sd"> Parameters</span>
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</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a><span class="sd"> ----------</span>
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</span><span id="L-493"><a href="#L-493"><span class="linenos">493</span></a><span class="sd"> ----------</span>
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</span><span id="L-493"><a href="#L-493"><span class="linenos">493</span></a><span class="sd"> fname : str</span>
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</span><span id="L-494"><a href="#L-494"><span class="linenos">494</span></a><span class="sd"> fname : str</span>
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</span><span id="L-494"><a href="#L-494"><span class="linenos">494</span></a><span class="sd"> Filename of the input file.</span>
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</span><span id="L-495"><a href="#L-495"><span class="linenos">495</span></a><span class="sd"> Filename of the input file.</span>
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</span><span id="L-495"><a href="#L-495"><span class="linenos">495</span></a><span class="sd"> verbose : bool</span>
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</span><span id="L-496"><a href="#L-496"><span class="linenos">496</span></a><span class="sd"> verbose : bool</span>
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</span><span id="L-496"><a href="#L-496"><span class="linenos">496</span></a><span class="sd"> Print additional information that was written to the file.</span>
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</span><span id="L-497"><a href="#L-497"><span class="linenos">497</span></a><span class="sd"> Print additional information that was written to the file.</span>
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</span><span id="L-497"><a href="#L-497"><span class="linenos">497</span></a><span class="sd"> gz : bool</span>
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</span><span id="L-498"><a href="#L-498"><span class="linenos">498</span></a><span class="sd"> gz : bool</span>
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</span><span id="L-498"><a href="#L-498"><span class="linenos">498</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
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</span><span id="L-499"><a href="#L-499"><span class="linenos">499</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
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</span><span id="L-499"><a href="#L-499"><span class="linenos">499</span></a><span class="sd"> full_output : bool</span>
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</span><span id="L-500"><a href="#L-500"><span class="linenos">500</span></a><span class="sd"> full_output : bool</span>
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</span><span id="L-500"><a href="#L-500"><span class="linenos">500</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
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</span><span id="L-501"><a href="#L-501"><span class="linenos">501</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
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</span><span id="L-501"><a href="#L-501"><span class="linenos">501</span></a><span class="sd"> If False, only the data is returned.</span>
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</span><span id="L-502"><a href="#L-502"><span class="linenos">502</span></a><span class="sd"> If False, only the data is returned.</span>
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</span><span id="L-502"><a href="#L-502"><span class="linenos">502</span></a>
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</span><span id="L-503"><a href="#L-503"><span class="linenos">503</span></a>
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</span><span id="L-503"><a href="#L-503"><span class="linenos">503</span></a><span class="sd"> Returns</span>
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</span><span id="L-504"><a href="#L-504"><span class="linenos">504</span></a><span class="sd"> Returns</span>
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</span><span id="L-504"><a href="#L-504"><span class="linenos">504</span></a><span class="sd"> -------</span>
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</span><span id="L-505"><a href="#L-505"><span class="linenos">505</span></a><span class="sd"> -------</span>
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</span><span id="L-505"><a href="#L-505"><span class="linenos">505</span></a><span class="sd"> result : list[Obs]</span>
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</span><span id="L-506"><a href="#L-506"><span class="linenos">506</span></a><span class="sd"> result : list[Obs]</span>
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</span><span id="L-506"><a href="#L-506"><span class="linenos">506</span></a><span class="sd"> reconstructed list of observables from the json string</span>
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</span><span id="L-507"><a href="#L-507"><span class="linenos">507</span></a><span class="sd"> reconstructed list of observables from the json string</span>
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</span><span id="L-507"><a href="#L-507"><span class="linenos">507</span></a><span class="sd"> or</span>
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</span><span id="L-508"><a href="#L-508"><span class="linenos">508</span></a><span class="sd"> or</span>
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</span><span id="L-508"><a href="#L-508"><span class="linenos">508</span></a><span class="sd"> result : Obs</span>
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</span><span id="L-509"><a href="#L-509"><span class="linenos">509</span></a><span class="sd"> result : Obs</span>
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</span><span id="L-509"><a href="#L-509"><span class="linenos">509</span></a><span class="sd"> only one observable if the list only has one entry</span>
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</span><span id="L-510"><a href="#L-510"><span class="linenos">510</span></a><span class="sd"> only one observable if the list only has one entry</span>
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</span><span id="L-510"><a href="#L-510"><span class="linenos">510</span></a><span class="sd"> or</span>
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</span><span id="L-511"><a href="#L-511"><span class="linenos">511</span></a><span class="sd"> or</span>
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</span><span id="L-511"><a href="#L-511"><span class="linenos">511</span></a><span class="sd"> result : dict</span>
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</span><span id="L-512"><a href="#L-512"><span class="linenos">512</span></a><span class="sd"> result : dict</span>
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</span><span id="L-512"><a href="#L-512"><span class="linenos">512</span></a><span class="sd"> if full_output=True</span>
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</span><span id="L-513"><a href="#L-513"><span class="linenos">513</span></a><span class="sd"> if full_output=True</span>
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</span><span id="L-513"><a href="#L-513"><span class="linenos">513</span></a><span class="sd"> """</span>
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</span><span id="L-514"><a href="#L-514"><span class="linenos">514</span></a><span class="sd"> """</span>
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</span><span id="L-514"><a href="#L-514"><span class="linenos">514</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.json'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-515"><a href="#L-515"><span class="linenos">515</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.json'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-515"><a href="#L-515"><span class="linenos">515</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.json'</span>
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</span><span id="L-516"><a href="#L-516"><span class="linenos">516</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.json'</span>
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</span><span id="L-516"><a href="#L-516"><span class="linenos">516</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
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</span><span id="L-517"><a href="#L-517"><span class="linenos">517</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
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</span><span id="L-517"><a href="#L-517"><span class="linenos">517</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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||||||
</span><span id="L-518"><a href="#L-518"><span class="linenos">518</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-518"><a href="#L-518"><span class="linenos">518</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
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||||||
</span><span id="L-519"><a href="#L-519"><span class="linenos">519</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
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</span><span id="L-519"><a href="#L-519"><span class="linenos">519</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
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</span><span id="L-520"><a href="#L-520"><span class="linenos">520</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
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</span><span id="L-520"><a href="#L-520"><span class="linenos">520</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
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||||||
</span><span id="L-521"><a href="#L-521"><span class="linenos">521</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
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</span><span id="L-521"><a href="#L-521"><span class="linenos">521</span></a> <span class="k">else</span><span class="p">:</span>
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</span><span id="L-522"><a href="#L-522"><span class="linenos">522</span></a> <span class="k">else</span><span class="p">:</span>
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</span><span id="L-522"><a href="#L-522"><span class="linenos">522</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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||||||
</span><span id="L-523"><a href="#L-523"><span class="linenos">523</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
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</span><span id="L-523"><a href="#L-523"><span class="linenos">523</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
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</span><span id="L-524"><a href="#L-524"><span class="linenos">524</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
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</span><span id="L-524"><a href="#L-524"><span class="linenos">524</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
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||||||
</span><span id="L-525"><a href="#L-525"><span class="linenos">525</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
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</span><span id="L-525"><a href="#L-525"><span class="linenos">525</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
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||||||
</span><span id="L-526"><a href="#L-526"><span class="linenos">526</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
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</span><span id="L-526"><a href="#L-526"><span class="linenos">526</span></a>
|
||||||
</span><span id="L-527"><a href="#L-527"><span class="linenos">527</span></a>
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</span><span id="L-527"><a href="#L-527"><span class="linenos">527</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
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||||||
</span><span id="L-528"><a href="#L-528"><span class="linenos">528</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
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</span><span id="L-528"><a href="#L-528"><span class="linenos">528</span></a>
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||||||
</span><span id="L-529"><a href="#L-529"><span class="linenos">529</span></a>
|
</span><span id="L-529"><a href="#L-529"><span class="linenos">529</span></a>
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||||||
</span><span id="L-530"><a href="#L-530"><span class="linenos">530</span></a>
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</span><span id="L-530"><a href="#L-530"><span class="linenos">530</span></a><span class="k">def</span> <span class="nf">_ol_from_dict</span><span class="p">(</span><span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
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||||||
</span><span id="L-531"><a href="#L-531"><span class="linenos">531</span></a><span class="k">def</span> <span class="nf">_ol_from_dict</span><span class="p">(</span><span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
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</span><span id="L-531"><a href="#L-531"><span class="linenos">531</span></a><span class="w"> </span><span class="sd">"""Convert a dictionary of Obs objects to a list and a dictionary that contains</span>
|
||||||
</span><span id="L-532"><a href="#L-532"><span class="linenos">532</span></a><span class="w"> </span><span class="sd">"""Convert a dictionary of Obs objects to a list and a dictionary that contains</span>
|
</span><span id="L-532"><a href="#L-532"><span class="linenos">532</span></a><span class="sd"> placeholders instead of the Obs objects.</span>
|
||||||
</span><span id="L-533"><a href="#L-533"><span class="linenos">533</span></a><span class="sd"> placeholders instead of the Obs objects.</span>
|
</span><span id="L-533"><a href="#L-533"><span class="linenos">533</span></a>
|
||||||
</span><span id="L-534"><a href="#L-534"><span class="linenos">534</span></a>
|
</span><span id="L-534"><a href="#L-534"><span class="linenos">534</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-535"><a href="#L-535"><span class="linenos">535</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-535"><a href="#L-535"><span class="linenos">535</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-536"><a href="#L-536"><span class="linenos">536</span></a><span class="sd"> ----------</span>
|
</span><span id="L-536"><a href="#L-536"><span class="linenos">536</span></a><span class="sd"> ind : dict</span>
|
||||||
</span><span id="L-537"><a href="#L-537"><span class="linenos">537</span></a><span class="sd"> ind : dict</span>
|
</span><span id="L-537"><a href="#L-537"><span class="linenos">537</span></a><span class="sd"> Dict of JSON valid structures and objects that will be exported.</span>
|
||||||
</span><span id="L-538"><a href="#L-538"><span class="linenos">538</span></a><span class="sd"> Dict of JSON valid structures and objects that will be exported.</span>
|
</span><span id="L-538"><a href="#L-538"><span class="linenos">538</span></a><span class="sd"> At the moment, these object can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
||||||
</span><span id="L-539"><a href="#L-539"><span class="linenos">539</span></a><span class="sd"> At the moment, these object can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
</span><span id="L-539"><a href="#L-539"><span class="linenos">539</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
||||||
</span><span id="L-540"><a href="#L-540"><span class="linenos">540</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
</span><span id="L-540"><a href="#L-540"><span class="linenos">540</span></a><span class="sd"> reps : str</span>
|
||||||
</span><span id="L-541"><a href="#L-541"><span class="linenos">541</span></a><span class="sd"> reps : str</span>
|
</span><span id="L-541"><a href="#L-541"><span class="linenos">541</span></a><span class="sd"> Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
|
||||||
</span><span id="L-542"><a href="#L-542"><span class="linenos">542</span></a><span class="sd"> Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
|
</span><span id="L-542"><a href="#L-542"><span class="linenos">542</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-543"><a href="#L-543"><span class="linenos">543</span></a><span class="sd"> """</span>
|
</span><span id="L-543"><a href="#L-543"><span class="linenos">543</span></a>
|
||||||
</span><span id="L-544"><a href="#L-544"><span class="linenos">544</span></a>
|
</span><span id="L-544"><a href="#L-544"><span class="linenos">544</span></a> <span class="n">obstypes</span> <span class="o">=</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">Corr</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span>
|
||||||
</span><span id="L-545"><a href="#L-545"><span class="linenos">545</span></a> <span class="n">obstypes</span> <span class="o">=</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">Corr</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span>
|
</span><span id="L-545"><a href="#L-545"><span class="linenos">545</span></a>
|
||||||
</span><span id="L-546"><a href="#L-546"><span class="linenos">546</span></a>
|
</span><span id="L-546"><a href="#L-546"><span class="linenos">546</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
|
||||||
</span><span id="L-547"><a href="#L-547"><span class="linenos">547</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
|
</span><span id="L-547"><a href="#L-547"><span class="linenos">547</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Placeholder string has to be alphanumeric!'</span><span class="p">)</span>
|
||||||
</span><span id="L-548"><a href="#L-548"><span class="linenos">548</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Placeholder string has to be alphanumeric!'</span><span class="p">)</span>
|
</span><span id="L-548"><a href="#L-548"><span class="linenos">548</span></a> <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
|
||||||
</span><span id="L-549"><a href="#L-549"><span class="linenos">549</span></a> <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
|
</span><span id="L-549"><a href="#L-549"><span class="linenos">549</span></a> <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
|
||||||
</span><span id="L-550"><a href="#L-550"><span class="linenos">550</span></a> <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
|
</span><span id="L-550"><a href="#L-550"><span class="linenos">550</span></a>
|
||||||
</span><span id="L-551"><a href="#L-551"><span class="linenos">551</span></a>
|
</span><span id="L-551"><a href="#L-551"><span class="linenos">551</span></a> <span class="k">def</span> <span class="nf">dict_replace_obs</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
|
||||||
</span><span id="L-552"><a href="#L-552"><span class="linenos">552</span></a> <span class="k">def</span> <span class="nf">dict_replace_obs</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
|
</span><span id="L-552"><a href="#L-552"><span class="linenos">552</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
||||||
</span><span id="L-553"><a href="#L-553"><span class="linenos">553</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
</span><span id="L-553"><a href="#L-553"><span class="linenos">553</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
||||||
</span><span id="L-554"><a href="#L-554"><span class="linenos">554</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
</span><span id="L-554"><a href="#L-554"><span class="linenos">554</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
|
||||||
</span><span id="L-555"><a href="#L-555"><span class="linenos">555</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
|
</span><span id="L-555"><a href="#L-555"><span class="linenos">555</span></a> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
|
||||||
</span><span id="L-556"><a href="#L-556"><span class="linenos">556</span></a> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
|
</span><span id="L-556"><a href="#L-556"><span class="linenos">556</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
||||||
</span><span id="L-557"><a href="#L-557"><span class="linenos">557</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
</span><span id="L-557"><a href="#L-557"><span class="linenos">557</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
||||||
</span><span id="L-558"><a href="#L-558"><span class="linenos">558</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
</span><span id="L-558"><a href="#L-558"><span class="linenos">558</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">v</span><span class="p">]):</span>
|
||||||
</span><span id="L-559"><a href="#L-559"><span class="linenos">559</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">v</span><span class="p">]):</span>
|
</span><span id="L-559"><a href="#L-559"><span class="linenos">559</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
||||||
</span><span id="L-560"><a href="#L-560"><span class="linenos">560</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
</span><span id="L-560"><a href="#L-560"><span class="linenos">560</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
||||||
</span><span id="L-561"><a href="#L-561"><span class="linenos">561</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
</span><span id="L-561"><a href="#L-561"><span class="linenos">561</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
||||||
</span><span id="L-562"><a href="#L-562"><span class="linenos">562</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
</span><span id="L-562"><a href="#L-562"><span class="linenos">562</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
|
||||||
</span><span id="L-563"><a href="#L-563"><span class="linenos">563</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
|
</span><span id="L-563"><a href="#L-563"><span class="linenos">563</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
||||||
</span><span id="L-564"><a href="#L-564"><span class="linenos">564</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
</span><span id="L-564"><a href="#L-564"><span class="linenos">564</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'</span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
|
||||||
</span><span id="L-565"><a href="#L-565"><span class="linenos">565</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'</span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
|
</span><span id="L-565"><a href="#L-565"><span class="linenos">565</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||||
</span><span id="L-566"><a href="#L-566"><span class="linenos">566</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
</span><span id="L-566"><a href="#L-566"><span class="linenos">566</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
|
||||||
</span><span id="L-567"><a href="#L-567"><span class="linenos">567</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
|
</span><span id="L-567"><a href="#L-567"><span class="linenos">567</span></a> <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
|
||||||
</span><span id="L-568"><a href="#L-568"><span class="linenos">568</span></a> <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
|
</span><span id="L-568"><a href="#L-568"><span class="linenos">568</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.'</span> <span class="o">%</span> <span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
|
||||||
</span><span id="L-569"><a href="#L-569"><span class="linenos">569</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.'</span> <span class="o">%</span> <span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
|
</span><span id="L-569"><a href="#L-569"><span class="linenos">569</span></a> <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
|
||||||
</span><span id="L-570"><a href="#L-570"><span class="linenos">570</span></a> <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
|
</span><span id="L-570"><a href="#L-570"><span class="linenos">570</span></a> <span class="k">return</span> <span class="n">x</span>
|
||||||
</span><span id="L-571"><a href="#L-571"><span class="linenos">571</span></a> <span class="k">return</span> <span class="n">x</span>
|
</span><span id="L-571"><a href="#L-571"><span class="linenos">571</span></a>
|
||||||
</span><span id="L-572"><a href="#L-572"><span class="linenos">572</span></a>
|
</span><span id="L-572"><a href="#L-572"><span class="linenos">572</span></a> <span class="k">def</span> <span class="nf">list_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
|
||||||
</span><span id="L-573"><a href="#L-573"><span class="linenos">573</span></a> <span class="k">def</span> <span class="nf">list_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
|
</span><span id="L-573"><a href="#L-573"><span class="linenos">573</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
||||||
</span><span id="L-574"><a href="#L-574"><span class="linenos">574</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
</span><span id="L-574"><a href="#L-574"><span class="linenos">574</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
||||||
</span><span id="L-575"><a href="#L-575"><span class="linenos">575</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
</span><span id="L-575"><a href="#L-575"><span class="linenos">575</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
|
||||||
</span><span id="L-576"><a href="#L-576"><span class="linenos">576</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
|
</span><span id="L-576"><a href="#L-576"><span class="linenos">576</span></a> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
||||||
</span><span id="L-577"><a href="#L-577"><span class="linenos">577</span></a> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
</span><span id="L-577"><a href="#L-577"><span class="linenos">577</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
||||||
</span><span id="L-578"><a href="#L-578"><span class="linenos">578</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
</span><span id="L-578"><a href="#L-578"><span class="linenos">578</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-579"><a href="#L-579"><span class="linenos">579</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-579"><a href="#L-579"><span class="linenos">579</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">e</span><span class="p">]):</span>
|
||||||
</span><span id="L-580"><a href="#L-580"><span class="linenos">580</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">e</span><span class="p">]):</span>
|
</span><span id="L-580"><a href="#L-580"><span class="linenos">580</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-581"><a href="#L-581"><span class="linenos">581</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-581"><a href="#L-581"><span class="linenos">581</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
||||||
</span><span id="L-582"><a href="#L-582"><span class="linenos">582</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
</span><span id="L-582"><a href="#L-582"><span class="linenos">582</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-583"><a href="#L-583"><span class="linenos">583</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-583"><a href="#L-583"><span class="linenos">583</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
|
||||||
</span><span id="L-584"><a href="#L-584"><span class="linenos">584</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
|
</span><span id="L-584"><a href="#L-584"><span class="linenos">584</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-585"><a href="#L-585"><span class="linenos">585</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-585"><a href="#L-585"><span class="linenos">585</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'</span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
|
||||||
</span><span id="L-586"><a href="#L-586"><span class="linenos">586</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'</span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
|
</span><span id="L-586"><a href="#L-586"><span class="linenos">586</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||||
</span><span id="L-587"><a href="#L-587"><span class="linenos">587</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
</span><span id="L-587"><a href="#L-587"><span class="linenos">587</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
|
||||||
</span><span id="L-588"><a href="#L-588"><span class="linenos">588</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
|
</span><span id="L-588"><a href="#L-588"><span class="linenos">588</span></a> <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
|
||||||
</span><span id="L-589"><a href="#L-589"><span class="linenos">589</span></a> <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
|
</span><span id="L-589"><a href="#L-589"><span class="linenos">589</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.'</span> <span class="o">%</span> <span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
|
||||||
</span><span id="L-590"><a href="#L-590"><span class="linenos">590</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.'</span> <span class="o">%</span> <span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
|
</span><span id="L-590"><a href="#L-590"><span class="linenos">590</span></a> <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-591"><a href="#L-591"><span class="linenos">591</span></a> <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-591"><a href="#L-591"><span class="linenos">591</span></a> <span class="k">return</span> <span class="n">x</span>
|
||||||
</span><span id="L-592"><a href="#L-592"><span class="linenos">592</span></a> <span class="k">return</span> <span class="n">x</span>
|
</span><span id="L-592"><a href="#L-592"><span class="linenos">592</span></a>
|
||||||
</span><span id="L-593"><a href="#L-593"><span class="linenos">593</span></a>
|
</span><span id="L-593"><a href="#L-593"><span class="linenos">593</span></a> <span class="k">def</span> <span class="nf">obslist_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
|
||||||
</span><span id="L-594"><a href="#L-594"><span class="linenos">594</span></a> <span class="k">def</span> <span class="nf">obslist_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
|
</span><span id="L-594"><a href="#L-594"><span class="linenos">594</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
||||||
</span><span id="L-595"><a href="#L-595"><span class="linenos">595</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
</span><span id="L-595"><a href="#L-595"><span class="linenos">595</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
||||||
</span><span id="L-596"><a href="#L-596"><span class="linenos">596</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
</span><span id="L-596"><a href="#L-596"><span class="linenos">596</span></a> <span class="n">il</span> <span class="o">=</span> <span class="p">[]</span>
|
||||||
</span><span id="L-597"><a href="#L-597"><span class="linenos">597</span></a> <span class="n">il</span> <span class="o">=</span> <span class="p">[]</span>
|
</span><span id="L-597"><a href="#L-597"><span class="linenos">597</span></a> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
||||||
</span><span id="L-598"><a href="#L-598"><span class="linenos">598</span></a> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
</span><span id="L-598"><a href="#L-598"><span class="linenos">598</span></a> <span class="n">il</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-599"><a href="#L-599"><span class="linenos">599</span></a> <span class="n">il</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-599"><a href="#L-599"><span class="linenos">599</span></a>
|
||||||
</span><span id="L-600"><a href="#L-600"><span class="linenos">600</span></a>
|
</span><span id="L-600"><a href="#L-600"><span class="linenos">600</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">il</span><span class="p">)</span>
|
||||||
</span><span id="L-601"><a href="#L-601"><span class="linenos">601</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">il</span><span class="p">)</span>
|
</span><span id="L-601"><a href="#L-601"><span class="linenos">601</span></a> <span class="n">x</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'</span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
|
||||||
</span><span id="L-602"><a href="#L-602"><span class="linenos">602</span></a> <span class="n">x</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'</span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
|
</span><span id="L-602"><a href="#L-602"><span class="linenos">602</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||||
</span><span id="L-603"><a href="#L-603"><span class="linenos">603</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
</span><span id="L-603"><a href="#L-603"><span class="linenos">603</span></a> <span class="k">return</span> <span class="n">x</span>
|
||||||
</span><span id="L-604"><a href="#L-604"><span class="linenos">604</span></a> <span class="k">return</span> <span class="n">x</span>
|
</span><span id="L-604"><a href="#L-604"><span class="linenos">604</span></a>
|
||||||
</span><span id="L-605"><a href="#L-605"><span class="linenos">605</span></a>
|
</span><span id="L-605"><a href="#L-605"><span class="linenos">605</span></a> <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
|
||||||
</span><span id="L-606"><a href="#L-606"><span class="linenos">606</span></a> <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
|
</span><span id="L-606"><a href="#L-606"><span class="linenos">606</span></a>
|
||||||
</span><span id="L-607"><a href="#L-607"><span class="linenos">607</span></a>
|
</span><span id="L-607"><a href="#L-607"><span class="linenos">607</span></a> <span class="k">return</span> <span class="n">ol</span><span class="p">,</span> <span class="n">nd</span>
|
||||||
</span><span id="L-608"><a href="#L-608"><span class="linenos">608</span></a> <span class="k">return</span> <span class="n">ol</span><span class="p">,</span> <span class="n">nd</span>
|
</span><span id="L-608"><a href="#L-608"><span class="linenos">608</span></a>
|
||||||
</span><span id="L-609"><a href="#L-609"><span class="linenos">609</span></a>
|
</span><span id="L-609"><a href="#L-609"><span class="linenos">609</span></a>
|
||||||
</span><span id="L-610"><a href="#L-610"><span class="linenos">610</span></a>
|
</span><span id="L-610"><a href="#L-610"><span class="linenos">610</span></a><span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
||||||
</span><span id="L-611"><a href="#L-611"><span class="linenos">611</span></a><span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
</span><span id="L-611"><a href="#L-611"><span class="linenos">611</span></a><span class="w"> </span><span class="sd">"""Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
|
||||||
</span><span id="L-612"><a href="#L-612"><span class="linenos">612</span></a><span class="w"> </span><span class="sd">"""Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
|
</span><span id="L-612"><a href="#L-612"><span class="linenos">612</span></a>
|
||||||
</span><span id="L-613"><a href="#L-613"><span class="linenos">613</span></a>
|
</span><span id="L-613"><a href="#L-613"><span class="linenos">613</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-614"><a href="#L-614"><span class="linenos">614</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-614"><a href="#L-614"><span class="linenos">614</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-615"><a href="#L-615"><span class="linenos">615</span></a><span class="sd"> ----------</span>
|
</span><span id="L-615"><a href="#L-615"><span class="linenos">615</span></a><span class="sd"> od : dict</span>
|
||||||
</span><span id="L-616"><a href="#L-616"><span class="linenos">616</span></a><span class="sd"> od : dict</span>
|
</span><span id="L-616"><a href="#L-616"><span class="linenos">616</span></a><span class="sd"> Dict of JSON valid structures and objects that will be exported.</span>
|
||||||
</span><span id="L-617"><a href="#L-617"><span class="linenos">617</span></a><span class="sd"> Dict of JSON valid structures and objects that will be exported.</span>
|
</span><span id="L-617"><a href="#L-617"><span class="linenos">617</span></a><span class="sd"> At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
||||||
</span><span id="L-618"><a href="#L-618"><span class="linenos">618</span></a><span class="sd"> At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
</span><span id="L-618"><a href="#L-618"><span class="linenos">618</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
||||||
</span><span id="L-619"><a href="#L-619"><span class="linenos">619</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
</span><span id="L-619"><a href="#L-619"><span class="linenos">619</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="L-620"><a href="#L-620"><span class="linenos">620</span></a><span class="sd"> fname : str</span>
|
</span><span id="L-620"><a href="#L-620"><span class="linenos">620</span></a><span class="sd"> Filename of the output file.</span>
|
||||||
</span><span id="L-621"><a href="#L-621"><span class="linenos">621</span></a><span class="sd"> Filename of the output file.</span>
|
</span><span id="L-621"><a href="#L-621"><span class="linenos">621</span></a><span class="sd"> description : str</span>
|
||||||
</span><span id="L-622"><a href="#L-622"><span class="linenos">622</span></a><span class="sd"> description : str</span>
|
</span><span id="L-622"><a href="#L-622"><span class="linenos">622</span></a><span class="sd"> Optional string that describes the contents of the json file.</span>
|
||||||
</span><span id="L-623"><a href="#L-623"><span class="linenos">623</span></a><span class="sd"> Optional string that describes the contents of the json file.</span>
|
</span><span id="L-623"><a href="#L-623"><span class="linenos">623</span></a><span class="sd"> indent : int</span>
|
||||||
</span><span id="L-624"><a href="#L-624"><span class="linenos">624</span></a><span class="sd"> indent : int</span>
|
</span><span id="L-624"><a href="#L-624"><span class="linenos">624</span></a><span class="sd"> Specify the indentation level of the json file. None or 0 is permissible and</span>
|
||||||
</span><span id="L-625"><a href="#L-625"><span class="linenos">625</span></a><span class="sd"> Specify the indentation level of the json file. None or 0 is permissible and</span>
|
</span><span id="L-625"><a href="#L-625"><span class="linenos">625</span></a><span class="sd"> saves disk space.</span>
|
||||||
</span><span id="L-626"><a href="#L-626"><span class="linenos">626</span></a><span class="sd"> saves disk space.</span>
|
</span><span id="L-626"><a href="#L-626"><span class="linenos">626</span></a><span class="sd"> reps : str</span>
|
||||||
</span><span id="L-627"><a href="#L-627"><span class="linenos">627</span></a><span class="sd"> reps : str</span>
|
</span><span id="L-627"><a href="#L-627"><span class="linenos">627</span></a><span class="sd"> Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
|
||||||
</span><span id="L-628"><a href="#L-628"><span class="linenos">628</span></a><span class="sd"> Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
|
</span><span id="L-628"><a href="#L-628"><span class="linenos">628</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="L-629"><a href="#L-629"><span class="linenos">629</span></a><span class="sd"> gz : bool</span>
|
</span><span id="L-629"><a href="#L-629"><span class="linenos">629</span></a><span class="sd"> If True, the output is a gzipped json. If False, the output is a json file.</span>
|
||||||
</span><span id="L-630"><a href="#L-630"><span class="linenos">630</span></a><span class="sd"> If True, the output is a gzipped json. If False, the output is a json file.</span>
|
</span><span id="L-630"><a href="#L-630"><span class="linenos">630</span></a>
|
||||||
</span><span id="L-631"><a href="#L-631"><span class="linenos">631</span></a>
|
</span><span id="L-631"><a href="#L-631"><span class="linenos">631</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="L-632"><a href="#L-632"><span class="linenos">632</span></a><span class="sd"> Returns</span>
|
</span><span id="L-632"><a href="#L-632"><span class="linenos">632</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="L-633"><a href="#L-633"><span class="linenos">633</span></a><span class="sd"> -------</span>
|
</span><span id="L-633"><a href="#L-633"><span class="linenos">633</span></a><span class="sd"> None</span>
|
||||||
</span><span id="L-634"><a href="#L-634"><span class="linenos">634</span></a><span class="sd"> None</span>
|
</span><span id="L-634"><a href="#L-634"><span class="linenos">634</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-635"><a href="#L-635"><span class="linenos">635</span></a><span class="sd"> """</span>
|
</span><span id="L-635"><a href="#L-635"><span class="linenos">635</span></a>
|
||||||
</span><span id="L-636"><a href="#L-636"><span class="linenos">636</span></a>
|
</span><span id="L-636"><a href="#L-636"><span class="linenos">636</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
||||||
</span><span id="L-637"><a href="#L-637"><span class="linenos">637</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
</span><span id="L-637"><a href="#L-637"><span class="linenos">637</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'od has to be a dictionary. Did you want to use dump_to_json?'</span><span class="p">)</span>
|
||||||
</span><span id="L-638"><a href="#L-638"><span class="linenos">638</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'od has to be a dictionary. Did you want to use dump_to_json?'</span><span class="p">)</span>
|
</span><span id="L-638"><a href="#L-638"><span class="linenos">638</span></a>
|
||||||
</span><span id="L-639"><a href="#L-639"><span class="linenos">639</span></a>
|
</span><span id="L-639"><a href="#L-639"><span class="linenos">639</span></a> <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">'This JSON file contains a python dictionary that has been parsed to a list of structures. '</span>
|
||||||
</span><span id="L-640"><a href="#L-640"><span class="linenos">640</span></a> <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">'This JSON file contains a python dictionary that has been parsed to a list of structures. '</span>
|
</span><span id="L-640"><a href="#L-640"><span class="linenos">640</span></a> <span class="s1">'OBSDICT contains the dictionary, where Obs or other structures have been replaced by '</span>
|
||||||
</span><span id="L-641"><a href="#L-641"><span class="linenos">641</span></a> <span class="s1">'OBSDICT contains the dictionary, where Obs or other structures have been replaced by '</span>
|
</span><span id="L-641"><a href="#L-641"><span class="linenos">641</span></a> <span class="s1">''</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'[0-9]+. The field description contains the additional description of this JSON file. '</span>
|
||||||
</span><span id="L-642"><a href="#L-642"><span class="linenos">642</span></a> <span class="s1">''</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'[0-9]+. The field description contains the additional description of this JSON file. '</span>
|
</span><span id="L-642"><a href="#L-642"><span class="linenos">642</span></a> <span class="s1">'This file may be parsed to a dict with the pyerrors routine load_json_dict.'</span><span class="p">)</span>
|
||||||
</span><span id="L-643"><a href="#L-643"><span class="linenos">643</span></a> <span class="s1">'This file may be parsed to a dict with the pyerrors routine load_json_dict.'</span><span class="p">)</span>
|
</span><span id="L-643"><a href="#L-643"><span class="linenos">643</span></a>
|
||||||
</span><span id="L-644"><a href="#L-644"><span class="linenos">644</span></a>
|
</span><span id="L-644"><a href="#L-644"><span class="linenos">644</span></a> <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'INFO'</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">'OBSDICT'</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">'description'</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
|
||||||
</span><span id="L-645"><a href="#L-645"><span class="linenos">645</span></a> <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'INFO'</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">'OBSDICT'</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">'description'</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
|
</span><span id="L-645"><a href="#L-645"><span class="linenos">645</span></a> <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">'OBSDICT'</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
||||||
</span><span id="L-646"><a href="#L-646"><span class="linenos">646</span></a> <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">'OBSDICT'</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
</span><span id="L-646"><a href="#L-646"><span class="linenos">646</span></a>
|
||||||
</span><span id="L-647"><a href="#L-647"><span class="linenos">647</span></a>
|
</span><span id="L-647"><a href="#L-647"><span class="linenos">647</span></a> <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
||||||
</span><span id="L-648"><a href="#L-648"><span class="linenos">648</span></a> <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
</span><span id="L-648"><a href="#L-648"><span class="linenos">648</span></a>
|
||||||
</span><span id="L-649"><a href="#L-649"><span class="linenos">649</span></a>
|
</span><span id="L-649"><a href="#L-649"><span class="linenos">649</span></a>
|
||||||
</span><span id="L-650"><a href="#L-650"><span class="linenos">650</span></a>
|
</span><span id="L-650"><a href="#L-650"><span class="linenos">650</span></a><span class="k">def</span> <span class="nf">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
|
||||||
</span><span id="L-651"><a href="#L-651"><span class="linenos">651</span></a><span class="k">def</span> <span class="nf">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
|
</span><span id="L-651"><a href="#L-651"><span class="linenos">651</span></a><span class="w"> </span><span class="sd">"""Parse a list of Obs or structures containing Obs and an accompanying</span>
|
||||||
</span><span id="L-652"><a href="#L-652"><span class="linenos">652</span></a><span class="w"> </span><span class="sd">"""Parse a list of Obs or structures containing Obs and an accompanying</span>
|
</span><span id="L-652"><a href="#L-652"><span class="linenos">652</span></a><span class="sd"> dict, where the structures have been replaced by placeholders to a</span>
|
||||||
</span><span id="L-653"><a href="#L-653"><span class="linenos">653</span></a><span class="sd"> dict, where the structures have been replaced by placeholders to a</span>
|
</span><span id="L-653"><a href="#L-653"><span class="linenos">653</span></a><span class="sd"> dict that contains the structures.</span>
|
||||||
</span><span id="L-654"><a href="#L-654"><span class="linenos">654</span></a><span class="sd"> dict that contains the structures.</span>
|
</span><span id="L-654"><a href="#L-654"><span class="linenos">654</span></a>
|
||||||
</span><span id="L-655"><a href="#L-655"><span class="linenos">655</span></a>
|
</span><span id="L-655"><a href="#L-655"><span class="linenos">655</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
||||||
</span><span id="L-656"><a href="#L-656"><span class="linenos">656</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
</span><span id="L-656"><a href="#L-656"><span class="linenos">656</span></a>
|
||||||
</span><span id="L-657"><a href="#L-657"><span class="linenos">657</span></a>
|
</span><span id="L-657"><a href="#L-657"><span class="linenos">657</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-658"><a href="#L-658"><span class="linenos">658</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-658"><a href="#L-658"><span class="linenos">658</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-659"><a href="#L-659"><span class="linenos">659</span></a><span class="sd"> ----------</span>
|
</span><span id="L-659"><a href="#L-659"><span class="linenos">659</span></a><span class="sd"> ol : list</span>
|
||||||
</span><span id="L-660"><a href="#L-660"><span class="linenos">660</span></a><span class="sd"> ol : list</span>
|
</span><span id="L-660"><a href="#L-660"><span class="linenos">660</span></a><span class="sd"> List of objects -</span>
|
||||||
</span><span id="L-661"><a href="#L-661"><span class="linenos">661</span></a><span class="sd"> List of objects -</span>
|
</span><span id="L-661"><a href="#L-661"><span class="linenos">661</span></a><span class="sd"> At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
||||||
</span><span id="L-662"><a href="#L-662"><span class="linenos">662</span></a><span class="sd"> At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
</span><span id="L-662"><a href="#L-662"><span class="linenos">662</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
||||||
</span><span id="L-663"><a href="#L-663"><span class="linenos">663</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
</span><span id="L-663"><a href="#L-663"><span class="linenos">663</span></a><span class="sd"> ind : dict</span>
|
||||||
</span><span id="L-664"><a href="#L-664"><span class="linenos">664</span></a><span class="sd"> ind : dict</span>
|
</span><span id="L-664"><a href="#L-664"><span class="linenos">664</span></a><span class="sd"> Dict that defines the structure of the resulting dict and contains placeholders</span>
|
||||||
</span><span id="L-665"><a href="#L-665"><span class="linenos">665</span></a><span class="sd"> Dict that defines the structure of the resulting dict and contains placeholders</span>
|
</span><span id="L-665"><a href="#L-665"><span class="linenos">665</span></a><span class="sd"> reps : str</span>
|
||||||
</span><span id="L-666"><a href="#L-666"><span class="linenos">666</span></a><span class="sd"> reps : str</span>
|
</span><span id="L-666"><a href="#L-666"><span class="linenos">666</span></a><span class="sd"> Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
|
||||||
</span><span id="L-667"><a href="#L-667"><span class="linenos">667</span></a><span class="sd"> Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
|
</span><span id="L-667"><a href="#L-667"><span class="linenos">667</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-668"><a href="#L-668"><span class="linenos">668</span></a><span class="sd"> """</span>
|
</span><span id="L-668"><a href="#L-668"><span class="linenos">668</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
|
||||||
</span><span id="L-669"><a href="#L-669"><span class="linenos">669</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
|
</span><span id="L-669"><a href="#L-669"><span class="linenos">669</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Placeholder string has to be alphanumeric!'</span><span class="p">)</span>
|
||||||
</span><span id="L-670"><a href="#L-670"><span class="linenos">670</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Placeholder string has to be alphanumeric!'</span><span class="p">)</span>
|
</span><span id="L-670"><a href="#L-670"><span class="linenos">670</span></a>
|
||||||
</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a>
|
</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a> <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
|
||||||
</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a> <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
|
</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a>
|
||||||
</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a>
|
</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a> <span class="k">def</span> <span class="nf">dict_replace_string</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
|
||||||
</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a> <span class="k">def</span> <span class="nf">dict_replace_string</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
|
</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
||||||
</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
||||||
</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
|
||||||
</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
|
</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
|
||||||
</span><span id="L-678"><a href="#L-678"><span class="linenos">678</span></a> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
|
</span><span id="L-678"><a href="#L-678"><span class="linenos">678</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
||||||
</span><span id="L-679"><a href="#L-679"><span class="linenos">679</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
</span><span id="L-679"><a href="#L-679"><span class="linenos">679</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
||||||
</span><span id="L-680"><a href="#L-680"><span class="linenos">680</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
</span><span id="L-680"><a href="#L-680"><span class="linenos">680</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
||||||
</span><span id="L-681"><a href="#L-681"><span class="linenos">681</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
</span><span id="L-681"><a href="#L-681"><span class="linenos">681</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
||||||
</span><span id="L-682"><a href="#L-682"><span class="linenos">682</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
|
</span><span id="L-682"><a href="#L-682"><span class="linenos">682</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
|
||||||
</span><span id="L-683"><a href="#L-683"><span class="linenos">683</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
|
</span><span id="L-683"><a href="#L-683"><span class="linenos">683</span></a> <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
|
||||||
</span><span id="L-684"><a href="#L-684"><span class="linenos">684</span></a> <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
|
</span><span id="L-684"><a href="#L-684"><span class="linenos">684</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
|
||||||
</span><span id="L-685"><a href="#L-685"><span class="linenos">685</span></a> <span class="n">v</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
|
</span><span id="L-685"><a href="#L-685"><span class="linenos">685</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||||
</span><span id="L-686"><a href="#L-686"><span class="linenos">686</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
</span><span id="L-686"><a href="#L-686"><span class="linenos">686</span></a> <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
|
||||||
</span><span id="L-687"><a href="#L-687"><span class="linenos">687</span></a> <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
|
</span><span id="L-687"><a href="#L-687"><span class="linenos">687</span></a> <span class="k">return</span> <span class="n">x</span>
|
||||||
</span><span id="L-688"><a href="#L-688"><span class="linenos">688</span></a> <span class="k">return</span> <span class="n">x</span>
|
</span><span id="L-688"><a href="#L-688"><span class="linenos">688</span></a>
|
||||||
</span><span id="L-689"><a href="#L-689"><span class="linenos">689</span></a>
|
</span><span id="L-689"><a href="#L-689"><span class="linenos">689</span></a> <span class="k">def</span> <span class="nf">list_replace_string</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
|
||||||
</span><span id="L-690"><a href="#L-690"><span class="linenos">690</span></a> <span class="k">def</span> <span class="nf">list_replace_string</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
|
</span><span id="L-690"><a href="#L-690"><span class="linenos">690</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
||||||
</span><span id="L-691"><a href="#L-691"><span class="linenos">691</span></a> <span class="k">nonlocal</span> <span class="n">counter</span>
|
</span><span id="L-691"><a href="#L-691"><span class="linenos">691</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
||||||
</span><span id="L-692"><a href="#L-692"><span class="linenos">692</span></a> <span class="k">nonlocal</span> <span class="n">ol</span>
|
</span><span id="L-692"><a href="#L-692"><span class="linenos">692</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
|
||||||
</span><span id="L-693"><a href="#L-693"><span class="linenos">693</span></a> <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
|
</span><span id="L-693"><a href="#L-693"><span class="linenos">693</span></a> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
||||||
</span><span id="L-694"><a href="#L-694"><span class="linenos">694</span></a> <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
</span><span id="L-694"><a href="#L-694"><span class="linenos">694</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
||||||
</span><span id="L-695"><a href="#L-695"><span class="linenos">695</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
|
</span><span id="L-695"><a href="#L-695"><span class="linenos">695</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-696"><a href="#L-696"><span class="linenos">696</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-696"><a href="#L-696"><span class="linenos">696</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
||||||
</span><span id="L-697"><a href="#L-697"><span class="linenos">697</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
</span><span id="L-697"><a href="#L-697"><span class="linenos">697</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-698"><a href="#L-698"><span class="linenos">698</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-698"><a href="#L-698"><span class="linenos">698</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
|
||||||
</span><span id="L-699"><a href="#L-699"><span class="linenos">699</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">'</span><span class="si">%s</span><span class="s1">[0-9]+'</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
|
</span><span id="L-699"><a href="#L-699"><span class="linenos">699</span></a> <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">e</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
|
||||||
</span><span id="L-700"><a href="#L-700"><span class="linenos">700</span></a> <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">e</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
|
</span><span id="L-700"><a href="#L-700"><span class="linenos">700</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
|
||||||
</span><span id="L-701"><a href="#L-701"><span class="linenos">701</span></a> <span class="n">e</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
|
</span><span id="L-701"><a href="#L-701"><span class="linenos">701</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||||
</span><span id="L-702"><a href="#L-702"><span class="linenos">702</span></a> <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
|
</span><span id="L-702"><a href="#L-702"><span class="linenos">702</span></a> <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
||||||
</span><span id="L-703"><a href="#L-703"><span class="linenos">703</span></a> <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
|
</span><span id="L-703"><a href="#L-703"><span class="linenos">703</span></a> <span class="k">return</span> <span class="n">x</span>
|
||||||
</span><span id="L-704"><a href="#L-704"><span class="linenos">704</span></a> <span class="k">return</span> <span class="n">x</span>
|
</span><span id="L-704"><a href="#L-704"><span class="linenos">704</span></a>
|
||||||
</span><span id="L-705"><a href="#L-705"><span class="linenos">705</span></a>
|
</span><span id="L-705"><a href="#L-705"><span class="linenos">705</span></a> <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
|
||||||
</span><span id="L-706"><a href="#L-706"><span class="linenos">706</span></a> <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
|
</span><span id="L-706"><a href="#L-706"><span class="linenos">706</span></a>
|
||||||
</span><span id="L-707"><a href="#L-707"><span class="linenos">707</span></a>
|
</span><span id="L-707"><a href="#L-707"><span class="linenos">707</span></a> <span class="k">if</span> <span class="n">counter</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
|
||||||
</span><span id="L-708"><a href="#L-708"><span class="linenos">708</span></a> <span class="k">if</span> <span class="n">counter</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
|
</span><span id="L-708"><a href="#L-708"><span class="linenos">708</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'No placeholder has been replaced! Check if reps is set correctly.'</span><span class="p">)</span>
|
||||||
</span><span id="L-709"><a href="#L-709"><span class="linenos">709</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'No placeholder has been replaced! Check if reps is set correctly.'</span><span class="p">)</span>
|
</span><span id="L-709"><a href="#L-709"><span class="linenos">709</span></a>
|
||||||
</span><span id="L-710"><a href="#L-710"><span class="linenos">710</span></a>
|
</span><span id="L-710"><a href="#L-710"><span class="linenos">710</span></a> <span class="k">return</span> <span class="n">nd</span>
|
||||||
</span><span id="L-711"><a href="#L-711"><span class="linenos">711</span></a> <span class="k">return</span> <span class="n">nd</span>
|
</span><span id="L-711"><a href="#L-711"><span class="linenos">711</span></a>
|
||||||
</span><span id="L-712"><a href="#L-712"><span class="linenos">712</span></a>
|
</span><span id="L-712"><a href="#L-712"><span class="linenos">712</span></a>
|
||||||
</span><span id="L-713"><a href="#L-713"><span class="linenos">713</span></a>
|
</span><span id="L-713"><a href="#L-713"><span class="linenos">713</span></a><span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
|
||||||
</span><span id="L-714"><a href="#L-714"><span class="linenos">714</span></a><span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
|
</span><span id="L-714"><a href="#L-714"><span class="linenos">714</span></a><span class="w"> </span><span class="sd">"""Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
|
||||||
</span><span id="L-715"><a href="#L-715"><span class="linenos">715</span></a><span class="w"> </span><span class="sd">"""Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
|
</span><span id="L-715"><a href="#L-715"><span class="linenos">715</span></a>
|
||||||
</span><span id="L-716"><a href="#L-716"><span class="linenos">716</span></a>
|
</span><span id="L-716"><a href="#L-716"><span class="linenos">716</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
||||||
</span><span id="L-717"><a href="#L-717"><span class="linenos">717</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
</span><span id="L-717"><a href="#L-717"><span class="linenos">717</span></a>
|
||||||
</span><span id="L-718"><a href="#L-718"><span class="linenos">718</span></a>
|
</span><span id="L-718"><a href="#L-718"><span class="linenos">718</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-719"><a href="#L-719"><span class="linenos">719</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-719"><a href="#L-719"><span class="linenos">719</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-720"><a href="#L-720"><span class="linenos">720</span></a><span class="sd"> ----------</span>
|
</span><span id="L-720"><a href="#L-720"><span class="linenos">720</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="L-721"><a href="#L-721"><span class="linenos">721</span></a><span class="sd"> fname : str</span>
|
</span><span id="L-721"><a href="#L-721"><span class="linenos">721</span></a><span class="sd"> Filename of the input file.</span>
|
||||||
</span><span id="L-722"><a href="#L-722"><span class="linenos">722</span></a><span class="sd"> Filename of the input file.</span>
|
</span><span id="L-722"><a href="#L-722"><span class="linenos">722</span></a><span class="sd"> verbose : bool</span>
|
||||||
</span><span id="L-723"><a href="#L-723"><span class="linenos">723</span></a><span class="sd"> verbose : bool</span>
|
</span><span id="L-723"><a href="#L-723"><span class="linenos">723</span></a><span class="sd"> Print additional information that was written to the file.</span>
|
||||||
</span><span id="L-724"><a href="#L-724"><span class="linenos">724</span></a><span class="sd"> Print additional information that was written to the file.</span>
|
</span><span id="L-724"><a href="#L-724"><span class="linenos">724</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="L-725"><a href="#L-725"><span class="linenos">725</span></a><span class="sd"> gz : bool</span>
|
</span><span id="L-725"><a href="#L-725"><span class="linenos">725</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
||||||
</span><span id="L-726"><a href="#L-726"><span class="linenos">726</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
</span><span id="L-726"><a href="#L-726"><span class="linenos">726</span></a><span class="sd"> full_output : bool</span>
|
||||||
</span><span id="L-727"><a href="#L-727"><span class="linenos">727</span></a><span class="sd"> full_output : bool</span>
|
</span><span id="L-727"><a href="#L-727"><span class="linenos">727</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
|
||||||
</span><span id="L-728"><a href="#L-728"><span class="linenos">728</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
|
</span><span id="L-728"><a href="#L-728"><span class="linenos">728</span></a><span class="sd"> If False, only the data is returned.</span>
|
||||||
</span><span id="L-729"><a href="#L-729"><span class="linenos">729</span></a><span class="sd"> If False, only the data is returned.</span>
|
</span><span id="L-729"><a href="#L-729"><span class="linenos">729</span></a><span class="sd"> reps : str</span>
|
||||||
</span><span id="L-730"><a href="#L-730"><span class="linenos">730</span></a><span class="sd"> reps : str</span>
|
</span><span id="L-730"><a href="#L-730"><span class="linenos">730</span></a><span class="sd"> Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
|
||||||
</span><span id="L-731"><a href="#L-731"><span class="linenos">731</span></a><span class="sd"> Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
|
</span><span id="L-731"><a href="#L-731"><span class="linenos">731</span></a>
|
||||||
</span><span id="L-732"><a href="#L-732"><span class="linenos">732</span></a>
|
</span><span id="L-732"><a href="#L-732"><span class="linenos">732</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="L-733"><a href="#L-733"><span class="linenos">733</span></a><span class="sd"> Returns</span>
|
</span><span id="L-733"><a href="#L-733"><span class="linenos">733</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="L-734"><a href="#L-734"><span class="linenos">734</span></a><span class="sd"> -------</span>
|
</span><span id="L-734"><a href="#L-734"><span class="linenos">734</span></a><span class="sd"> data : Obs / list / Corr</span>
|
||||||
</span><span id="L-735"><a href="#L-735"><span class="linenos">735</span></a><span class="sd"> data : Obs / list / Corr</span>
|
</span><span id="L-735"><a href="#L-735"><span class="linenos">735</span></a><span class="sd"> Read data</span>
|
||||||
</span><span id="L-736"><a href="#L-736"><span class="linenos">736</span></a><span class="sd"> Read data</span>
|
</span><span id="L-736"><a href="#L-736"><span class="linenos">736</span></a><span class="sd"> or</span>
|
||||||
</span><span id="L-737"><a href="#L-737"><span class="linenos">737</span></a><span class="sd"> or</span>
|
</span><span id="L-737"><a href="#L-737"><span class="linenos">737</span></a><span class="sd"> data : dict</span>
|
||||||
</span><span id="L-738"><a href="#L-738"><span class="linenos">738</span></a><span class="sd"> data : dict</span>
|
</span><span id="L-738"><a href="#L-738"><span class="linenos">738</span></a><span class="sd"> Read data and meta-data</span>
|
||||||
</span><span id="L-739"><a href="#L-739"><span class="linenos">739</span></a><span class="sd"> Read data and meta-data</span>
|
</span><span id="L-739"><a href="#L-739"><span class="linenos">739</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-740"><a href="#L-740"><span class="linenos">740</span></a><span class="sd"> """</span>
|
</span><span id="L-740"><a href="#L-740"><span class="linenos">740</span></a> <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
|
||||||
</span><span id="L-741"><a href="#L-741"><span class="linenos">741</span></a> <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
|
</span><span id="L-741"><a href="#L-741"><span class="linenos">741</span></a> <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'description'</span><span class="p">]</span>
|
||||||
</span><span id="L-742"><a href="#L-742"><span class="linenos">742</span></a> <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'description'</span><span class="p">]</span>
|
</span><span id="L-742"><a href="#L-742"><span class="linenos">742</span></a> <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'OBSDICT'</span><span class="p">]</span>
|
||||||
</span><span id="L-743"><a href="#L-743"><span class="linenos">743</span></a> <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'OBSDICT'</span><span class="p">]</span>
|
</span><span id="L-743"><a href="#L-743"><span class="linenos">743</span></a> <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span>
|
||||||
</span><span id="L-744"><a href="#L-744"><span class="linenos">744</span></a> <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span>
|
</span><span id="L-744"><a href="#L-744"><span class="linenos">744</span></a> <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
||||||
</span><span id="L-745"><a href="#L-745"><span class="linenos">745</span></a> <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
</span><span id="L-745"><a href="#L-745"><span class="linenos">745</span></a>
|
||||||
</span><span id="L-746"><a href="#L-746"><span class="linenos">746</span></a>
|
</span><span id="L-746"><a href="#L-746"><span class="linenos">746</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
|
||||||
</span><span id="L-747"><a href="#L-747"><span class="linenos">747</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
|
</span><span id="L-747"><a href="#L-747"><span class="linenos">747</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
|
||||||
</span><span id="L-748"><a href="#L-748"><span class="linenos">748</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
|
</span><span id="L-748"><a href="#L-748"><span class="linenos">748</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
|
||||||
</span><span id="L-749"><a href="#L-749"><span class="linenos">749</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
|
</span><span id="L-749"><a href="#L-749"><span class="linenos">749</span></a> <span class="k">return</span> <span class="n">indata</span>
|
||||||
</span><span id="L-750"><a href="#L-750"><span class="linenos">750</span></a> <span class="k">return</span> <span class="n">indata</span>
|
</span><span id="L-750"><a href="#L-750"><span class="linenos">750</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
</span><span id="L-751"><a href="#L-751"><span class="linenos">751</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="L-751"><a href="#L-751"><span class="linenos">751</span></a> <span class="k">return</span> <span class="n">od</span>
|
||||||
</span><span id="L-752"><a href="#L-752"><span class="linenos">752</span></a> <span class="k">return</span> <span class="n">od</span>
|
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -1191,8 +1190,7 @@ If True, the output is a gzipped json. If False, the output is a json file.</li>
|
||||||
</span><span id="import_json_string-480"><a href="#import_json_string-480"><span class="linenos">480</span></a><span class="sd"> result : dict</span>
|
</span><span id="import_json_string-480"><a href="#import_json_string-480"><span class="linenos">480</span></a><span class="sd"> result : dict</span>
|
||||||
</span><span id="import_json_string-481"><a href="#import_json_string-481"><span class="linenos">481</span></a><span class="sd"> if full_output=True</span>
|
</span><span id="import_json_string-481"><a href="#import_json_string-481"><span class="linenos">481</span></a><span class="sd"> if full_output=True</span>
|
||||||
</span><span id="import_json_string-482"><a href="#import_json_string-482"><span class="linenos">482</span></a><span class="sd"> """</span>
|
</span><span id="import_json_string-482"><a href="#import_json_string-482"><span class="linenos">482</span></a><span class="sd"> """</span>
|
||||||
</span><span id="import_json_string-483"><a href="#import_json_string-483"><span class="linenos">483</span></a>
|
</span><span id="import_json_string-483"><a href="#import_json_string-483"><span class="linenos">483</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
|
||||||
</span><span id="import_json_string-484"><a href="#import_json_string-484"><span class="linenos">484</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
|
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -1240,49 +1238,49 @@ if full_output=True</li>
|
||||||
|
|
||||||
</div>
|
</div>
|
||||||
<a class="headerlink" href="#load_json"></a>
|
<a class="headerlink" href="#load_json"></a>
|
||||||
<div class="pdoc-code codehilite"><pre><span></span><span id="load_json-487"><a href="#load_json-487"><span class="linenos">487</span></a><span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
|
<div class="pdoc-code codehilite"><pre><span></span><span id="load_json-486"><a href="#load_json-486"><span class="linenos">486</span></a><span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
|
||||||
</span><span id="load_json-488"><a href="#load_json-488"><span class="linenos">488</span></a><span class="w"> </span><span class="sd">"""Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
|
</span><span id="load_json-487"><a href="#load_json-487"><span class="linenos">487</span></a><span class="w"> </span><span class="sd">"""Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
|
||||||
</span><span id="load_json-489"><a href="#load_json-489"><span class="linenos">489</span></a>
|
</span><span id="load_json-488"><a href="#load_json-488"><span class="linenos">488</span></a>
|
||||||
</span><span id="load_json-490"><a href="#load_json-490"><span class="linenos">490</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
</span><span id="load_json-489"><a href="#load_json-489"><span class="linenos">489</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
||||||
</span><span id="load_json-491"><a href="#load_json-491"><span class="linenos">491</span></a><span class="sd"> If the list contains only one element, it is unpacked from the list.</span>
|
</span><span id="load_json-490"><a href="#load_json-490"><span class="linenos">490</span></a><span class="sd"> If the list contains only one element, it is unpacked from the list.</span>
|
||||||
</span><span id="load_json-492"><a href="#load_json-492"><span class="linenos">492</span></a>
|
</span><span id="load_json-491"><a href="#load_json-491"><span class="linenos">491</span></a>
|
||||||
</span><span id="load_json-493"><a href="#load_json-493"><span class="linenos">493</span></a><span class="sd"> Parameters</span>
|
</span><span id="load_json-492"><a href="#load_json-492"><span class="linenos">492</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="load_json-494"><a href="#load_json-494"><span class="linenos">494</span></a><span class="sd"> ----------</span>
|
</span><span id="load_json-493"><a href="#load_json-493"><span class="linenos">493</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="load_json-495"><a href="#load_json-495"><span class="linenos">495</span></a><span class="sd"> fname : str</span>
|
</span><span id="load_json-494"><a href="#load_json-494"><span class="linenos">494</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="load_json-496"><a href="#load_json-496"><span class="linenos">496</span></a><span class="sd"> Filename of the input file.</span>
|
</span><span id="load_json-495"><a href="#load_json-495"><span class="linenos">495</span></a><span class="sd"> Filename of the input file.</span>
|
||||||
</span><span id="load_json-497"><a href="#load_json-497"><span class="linenos">497</span></a><span class="sd"> verbose : bool</span>
|
</span><span id="load_json-496"><a href="#load_json-496"><span class="linenos">496</span></a><span class="sd"> verbose : bool</span>
|
||||||
</span><span id="load_json-498"><a href="#load_json-498"><span class="linenos">498</span></a><span class="sd"> Print additional information that was written to the file.</span>
|
</span><span id="load_json-497"><a href="#load_json-497"><span class="linenos">497</span></a><span class="sd"> Print additional information that was written to the file.</span>
|
||||||
</span><span id="load_json-499"><a href="#load_json-499"><span class="linenos">499</span></a><span class="sd"> gz : bool</span>
|
</span><span id="load_json-498"><a href="#load_json-498"><span class="linenos">498</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="load_json-500"><a href="#load_json-500"><span class="linenos">500</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
</span><span id="load_json-499"><a href="#load_json-499"><span class="linenos">499</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
||||||
</span><span id="load_json-501"><a href="#load_json-501"><span class="linenos">501</span></a><span class="sd"> full_output : bool</span>
|
</span><span id="load_json-500"><a href="#load_json-500"><span class="linenos">500</span></a><span class="sd"> full_output : bool</span>
|
||||||
</span><span id="load_json-502"><a href="#load_json-502"><span class="linenos">502</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
|
</span><span id="load_json-501"><a href="#load_json-501"><span class="linenos">501</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
|
||||||
</span><span id="load_json-503"><a href="#load_json-503"><span class="linenos">503</span></a><span class="sd"> If False, only the data is returned.</span>
|
</span><span id="load_json-502"><a href="#load_json-502"><span class="linenos">502</span></a><span class="sd"> If False, only the data is returned.</span>
|
||||||
</span><span id="load_json-504"><a href="#load_json-504"><span class="linenos">504</span></a>
|
</span><span id="load_json-503"><a href="#load_json-503"><span class="linenos">503</span></a>
|
||||||
</span><span id="load_json-505"><a href="#load_json-505"><span class="linenos">505</span></a><span class="sd"> Returns</span>
|
</span><span id="load_json-504"><a href="#load_json-504"><span class="linenos">504</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="load_json-506"><a href="#load_json-506"><span class="linenos">506</span></a><span class="sd"> -------</span>
|
</span><span id="load_json-505"><a href="#load_json-505"><span class="linenos">505</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="load_json-507"><a href="#load_json-507"><span class="linenos">507</span></a><span class="sd"> result : list[Obs]</span>
|
</span><span id="load_json-506"><a href="#load_json-506"><span class="linenos">506</span></a><span class="sd"> result : list[Obs]</span>
|
||||||
</span><span id="load_json-508"><a href="#load_json-508"><span class="linenos">508</span></a><span class="sd"> reconstructed list of observables from the json string</span>
|
</span><span id="load_json-507"><a href="#load_json-507"><span class="linenos">507</span></a><span class="sd"> reconstructed list of observables from the json string</span>
|
||||||
</span><span id="load_json-509"><a href="#load_json-509"><span class="linenos">509</span></a><span class="sd"> or</span>
|
</span><span id="load_json-508"><a href="#load_json-508"><span class="linenos">508</span></a><span class="sd"> or</span>
|
||||||
</span><span id="load_json-510"><a href="#load_json-510"><span class="linenos">510</span></a><span class="sd"> result : Obs</span>
|
</span><span id="load_json-509"><a href="#load_json-509"><span class="linenos">509</span></a><span class="sd"> result : Obs</span>
|
||||||
</span><span id="load_json-511"><a href="#load_json-511"><span class="linenos">511</span></a><span class="sd"> only one observable if the list only has one entry</span>
|
</span><span id="load_json-510"><a href="#load_json-510"><span class="linenos">510</span></a><span class="sd"> only one observable if the list only has one entry</span>
|
||||||
</span><span id="load_json-512"><a href="#load_json-512"><span class="linenos">512</span></a><span class="sd"> or</span>
|
</span><span id="load_json-511"><a href="#load_json-511"><span class="linenos">511</span></a><span class="sd"> or</span>
|
||||||
</span><span id="load_json-513"><a href="#load_json-513"><span class="linenos">513</span></a><span class="sd"> result : dict</span>
|
</span><span id="load_json-512"><a href="#load_json-512"><span class="linenos">512</span></a><span class="sd"> result : dict</span>
|
||||||
</span><span id="load_json-514"><a href="#load_json-514"><span class="linenos">514</span></a><span class="sd"> if full_output=True</span>
|
</span><span id="load_json-513"><a href="#load_json-513"><span class="linenos">513</span></a><span class="sd"> if full_output=True</span>
|
||||||
</span><span id="load_json-515"><a href="#load_json-515"><span class="linenos">515</span></a><span class="sd"> """</span>
|
</span><span id="load_json-514"><a href="#load_json-514"><span class="linenos">514</span></a><span class="sd"> """</span>
|
||||||
</span><span id="load_json-516"><a href="#load_json-516"><span class="linenos">516</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.json'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="load_json-515"><a href="#load_json-515"><span class="linenos">515</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.json'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="load_json-517"><a href="#load_json-517"><span class="linenos">517</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.json'</span>
|
</span><span id="load_json-516"><a href="#load_json-516"><span class="linenos">516</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.json'</span>
|
||||||
</span><span id="load_json-518"><a href="#load_json-518"><span class="linenos">518</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
|
</span><span id="load_json-517"><a href="#load_json-517"><span class="linenos">517</span></a> <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
|
||||||
</span><span id="load_json-519"><a href="#load_json-519"><span class="linenos">519</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="load_json-518"><a href="#load_json-518"><span class="linenos">518</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="load_json-520"><a href="#load_json-520"><span class="linenos">520</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
</span><span id="load_json-519"><a href="#load_json-519"><span class="linenos">519</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
||||||
</span><span id="load_json-521"><a href="#load_json-521"><span class="linenos">521</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
|
</span><span id="load_json-520"><a href="#load_json-520"><span class="linenos">520</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
|
||||||
</span><span id="load_json-522"><a href="#load_json-522"><span class="linenos">522</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
|
</span><span id="load_json-521"><a href="#load_json-521"><span class="linenos">521</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
|
||||||
</span><span id="load_json-523"><a href="#load_json-523"><span class="linenos">523</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="load_json-522"><a href="#load_json-522"><span class="linenos">522</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
</span><span id="load_json-524"><a href="#load_json-524"><span class="linenos">524</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="load_json-523"><a href="#load_json-523"><span class="linenos">523</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="load_json-525"><a href="#load_json-525"><span class="linenos">525</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
</span><span id="load_json-524"><a href="#load_json-524"><span class="linenos">524</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
||||||
</span><span id="load_json-526"><a href="#load_json-526"><span class="linenos">526</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
|
</span><span id="load_json-525"><a href="#load_json-525"><span class="linenos">525</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">'utf-8'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
|
||||||
</span><span id="load_json-527"><a href="#load_json-527"><span class="linenos">527</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
|
</span><span id="load_json-526"><a href="#load_json-526"><span class="linenos">526</span></a> <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
|
||||||
</span><span id="load_json-528"><a href="#load_json-528"><span class="linenos">528</span></a>
|
</span><span id="load_json-527"><a href="#load_json-527"><span class="linenos">527</span></a>
|
||||||
</span><span id="load_json-529"><a href="#load_json-529"><span class="linenos">529</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
|
</span><span id="load_json-528"><a href="#load_json-528"><span class="linenos">528</span></a> <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -1332,44 +1330,44 @@ if full_output=True</li>
|
||||||
|
|
||||||
</div>
|
</div>
|
||||||
<a class="headerlink" href="#dump_dict_to_json"></a>
|
<a class="headerlink" href="#dump_dict_to_json"></a>
|
||||||
<div class="pdoc-code codehilite"><pre><span></span><span id="dump_dict_to_json-612"><a href="#dump_dict_to_json-612"><span class="linenos">612</span></a><span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
<div class="pdoc-code codehilite"><pre><span></span><span id="dump_dict_to_json-611"><a href="#dump_dict_to_json-611"><span class="linenos">611</span></a><span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
||||||
</span><span id="dump_dict_to_json-613"><a href="#dump_dict_to_json-613"><span class="linenos">613</span></a><span class="w"> </span><span class="sd">"""Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
|
</span><span id="dump_dict_to_json-612"><a href="#dump_dict_to_json-612"><span class="linenos">612</span></a><span class="w"> </span><span class="sd">"""Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
|
||||||
</span><span id="dump_dict_to_json-614"><a href="#dump_dict_to_json-614"><span class="linenos">614</span></a>
|
</span><span id="dump_dict_to_json-613"><a href="#dump_dict_to_json-613"><span class="linenos">613</span></a>
|
||||||
</span><span id="dump_dict_to_json-615"><a href="#dump_dict_to_json-615"><span class="linenos">615</span></a><span class="sd"> Parameters</span>
|
</span><span id="dump_dict_to_json-614"><a href="#dump_dict_to_json-614"><span class="linenos">614</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="dump_dict_to_json-616"><a href="#dump_dict_to_json-616"><span class="linenos">616</span></a><span class="sd"> ----------</span>
|
</span><span id="dump_dict_to_json-615"><a href="#dump_dict_to_json-615"><span class="linenos">615</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="dump_dict_to_json-617"><a href="#dump_dict_to_json-617"><span class="linenos">617</span></a><span class="sd"> od : dict</span>
|
</span><span id="dump_dict_to_json-616"><a href="#dump_dict_to_json-616"><span class="linenos">616</span></a><span class="sd"> od : dict</span>
|
||||||
</span><span id="dump_dict_to_json-618"><a href="#dump_dict_to_json-618"><span class="linenos">618</span></a><span class="sd"> Dict of JSON valid structures and objects that will be exported.</span>
|
</span><span id="dump_dict_to_json-617"><a href="#dump_dict_to_json-617"><span class="linenos">617</span></a><span class="sd"> Dict of JSON valid structures and objects that will be exported.</span>
|
||||||
</span><span id="dump_dict_to_json-619"><a href="#dump_dict_to_json-619"><span class="linenos">619</span></a><span class="sd"> At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
</span><span id="dump_dict_to_json-618"><a href="#dump_dict_to_json-618"><span class="linenos">618</span></a><span class="sd"> At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
|
||||||
</span><span id="dump_dict_to_json-620"><a href="#dump_dict_to_json-620"><span class="linenos">620</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
</span><span id="dump_dict_to_json-619"><a href="#dump_dict_to_json-619"><span class="linenos">619</span></a><span class="sd"> All Obs inside a structure have to be defined on the same set of configurations.</span>
|
||||||
</span><span id="dump_dict_to_json-621"><a href="#dump_dict_to_json-621"><span class="linenos">621</span></a><span class="sd"> fname : str</span>
|
</span><span id="dump_dict_to_json-620"><a href="#dump_dict_to_json-620"><span class="linenos">620</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="dump_dict_to_json-622"><a href="#dump_dict_to_json-622"><span class="linenos">622</span></a><span class="sd"> Filename of the output file.</span>
|
</span><span id="dump_dict_to_json-621"><a href="#dump_dict_to_json-621"><span class="linenos">621</span></a><span class="sd"> Filename of the output file.</span>
|
||||||
</span><span id="dump_dict_to_json-623"><a href="#dump_dict_to_json-623"><span class="linenos">623</span></a><span class="sd"> description : str</span>
|
</span><span id="dump_dict_to_json-622"><a href="#dump_dict_to_json-622"><span class="linenos">622</span></a><span class="sd"> description : str</span>
|
||||||
</span><span id="dump_dict_to_json-624"><a href="#dump_dict_to_json-624"><span class="linenos">624</span></a><span class="sd"> Optional string that describes the contents of the json file.</span>
|
</span><span id="dump_dict_to_json-623"><a href="#dump_dict_to_json-623"><span class="linenos">623</span></a><span class="sd"> Optional string that describes the contents of the json file.</span>
|
||||||
</span><span id="dump_dict_to_json-625"><a href="#dump_dict_to_json-625"><span class="linenos">625</span></a><span class="sd"> indent : int</span>
|
</span><span id="dump_dict_to_json-624"><a href="#dump_dict_to_json-624"><span class="linenos">624</span></a><span class="sd"> indent : int</span>
|
||||||
</span><span id="dump_dict_to_json-626"><a href="#dump_dict_to_json-626"><span class="linenos">626</span></a><span class="sd"> Specify the indentation level of the json file. None or 0 is permissible and</span>
|
</span><span id="dump_dict_to_json-625"><a href="#dump_dict_to_json-625"><span class="linenos">625</span></a><span class="sd"> Specify the indentation level of the json file. None or 0 is permissible and</span>
|
||||||
</span><span id="dump_dict_to_json-627"><a href="#dump_dict_to_json-627"><span class="linenos">627</span></a><span class="sd"> saves disk space.</span>
|
</span><span id="dump_dict_to_json-626"><a href="#dump_dict_to_json-626"><span class="linenos">626</span></a><span class="sd"> saves disk space.</span>
|
||||||
</span><span id="dump_dict_to_json-628"><a href="#dump_dict_to_json-628"><span class="linenos">628</span></a><span class="sd"> reps : str</span>
|
</span><span id="dump_dict_to_json-627"><a href="#dump_dict_to_json-627"><span class="linenos">627</span></a><span class="sd"> reps : str</span>
|
||||||
</span><span id="dump_dict_to_json-629"><a href="#dump_dict_to_json-629"><span class="linenos">629</span></a><span class="sd"> Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
|
</span><span id="dump_dict_to_json-628"><a href="#dump_dict_to_json-628"><span class="linenos">628</span></a><span class="sd"> Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
|
||||||
</span><span id="dump_dict_to_json-630"><a href="#dump_dict_to_json-630"><span class="linenos">630</span></a><span class="sd"> gz : bool</span>
|
</span><span id="dump_dict_to_json-629"><a href="#dump_dict_to_json-629"><span class="linenos">629</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="dump_dict_to_json-631"><a href="#dump_dict_to_json-631"><span class="linenos">631</span></a><span class="sd"> If True, the output is a gzipped json. If False, the output is a json file.</span>
|
</span><span id="dump_dict_to_json-630"><a href="#dump_dict_to_json-630"><span class="linenos">630</span></a><span class="sd"> If True, the output is a gzipped json. If False, the output is a json file.</span>
|
||||||
</span><span id="dump_dict_to_json-632"><a href="#dump_dict_to_json-632"><span class="linenos">632</span></a>
|
</span><span id="dump_dict_to_json-631"><a href="#dump_dict_to_json-631"><span class="linenos">631</span></a>
|
||||||
</span><span id="dump_dict_to_json-633"><a href="#dump_dict_to_json-633"><span class="linenos">633</span></a><span class="sd"> Returns</span>
|
</span><span id="dump_dict_to_json-632"><a href="#dump_dict_to_json-632"><span class="linenos">632</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="dump_dict_to_json-634"><a href="#dump_dict_to_json-634"><span class="linenos">634</span></a><span class="sd"> -------</span>
|
</span><span id="dump_dict_to_json-633"><a href="#dump_dict_to_json-633"><span class="linenos">633</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="dump_dict_to_json-635"><a href="#dump_dict_to_json-635"><span class="linenos">635</span></a><span class="sd"> None</span>
|
</span><span id="dump_dict_to_json-634"><a href="#dump_dict_to_json-634"><span class="linenos">634</span></a><span class="sd"> None</span>
|
||||||
</span><span id="dump_dict_to_json-636"><a href="#dump_dict_to_json-636"><span class="linenos">636</span></a><span class="sd"> """</span>
|
</span><span id="dump_dict_to_json-635"><a href="#dump_dict_to_json-635"><span class="linenos">635</span></a><span class="sd"> """</span>
|
||||||
</span><span id="dump_dict_to_json-637"><a href="#dump_dict_to_json-637"><span class="linenos">637</span></a>
|
</span><span id="dump_dict_to_json-636"><a href="#dump_dict_to_json-636"><span class="linenos">636</span></a>
|
||||||
</span><span id="dump_dict_to_json-638"><a href="#dump_dict_to_json-638"><span class="linenos">638</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
</span><span id="dump_dict_to_json-637"><a href="#dump_dict_to_json-637"><span class="linenos">637</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
|
||||||
</span><span id="dump_dict_to_json-639"><a href="#dump_dict_to_json-639"><span class="linenos">639</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'od has to be a dictionary. Did you want to use dump_to_json?'</span><span class="p">)</span>
|
</span><span id="dump_dict_to_json-638"><a href="#dump_dict_to_json-638"><span class="linenos">638</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'od has to be a dictionary. Did you want to use dump_to_json?'</span><span class="p">)</span>
|
||||||
</span><span id="dump_dict_to_json-640"><a href="#dump_dict_to_json-640"><span class="linenos">640</span></a>
|
</span><span id="dump_dict_to_json-639"><a href="#dump_dict_to_json-639"><span class="linenos">639</span></a>
|
||||||
</span><span id="dump_dict_to_json-641"><a href="#dump_dict_to_json-641"><span class="linenos">641</span></a> <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">'This JSON file contains a python dictionary that has been parsed to a list of structures. '</span>
|
</span><span id="dump_dict_to_json-640"><a href="#dump_dict_to_json-640"><span class="linenos">640</span></a> <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">'This JSON file contains a python dictionary that has been parsed to a list of structures. '</span>
|
||||||
</span><span id="dump_dict_to_json-642"><a href="#dump_dict_to_json-642"><span class="linenos">642</span></a> <span class="s1">'OBSDICT contains the dictionary, where Obs or other structures have been replaced by '</span>
|
</span><span id="dump_dict_to_json-641"><a href="#dump_dict_to_json-641"><span class="linenos">641</span></a> <span class="s1">'OBSDICT contains the dictionary, where Obs or other structures have been replaced by '</span>
|
||||||
</span><span id="dump_dict_to_json-643"><a href="#dump_dict_to_json-643"><span class="linenos">643</span></a> <span class="s1">''</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'[0-9]+. The field description contains the additional description of this JSON file. '</span>
|
</span><span id="dump_dict_to_json-642"><a href="#dump_dict_to_json-642"><span class="linenos">642</span></a> <span class="s1">''</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">'[0-9]+. The field description contains the additional description of this JSON file. '</span>
|
||||||
</span><span id="dump_dict_to_json-644"><a href="#dump_dict_to_json-644"><span class="linenos">644</span></a> <span class="s1">'This file may be parsed to a dict with the pyerrors routine load_json_dict.'</span><span class="p">)</span>
|
</span><span id="dump_dict_to_json-643"><a href="#dump_dict_to_json-643"><span class="linenos">643</span></a> <span class="s1">'This file may be parsed to a dict with the pyerrors routine load_json_dict.'</span><span class="p">)</span>
|
||||||
</span><span id="dump_dict_to_json-645"><a href="#dump_dict_to_json-645"><span class="linenos">645</span></a>
|
</span><span id="dump_dict_to_json-644"><a href="#dump_dict_to_json-644"><span class="linenos">644</span></a>
|
||||||
</span><span id="dump_dict_to_json-646"><a href="#dump_dict_to_json-646"><span class="linenos">646</span></a> <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'INFO'</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">'OBSDICT'</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">'description'</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
|
</span><span id="dump_dict_to_json-645"><a href="#dump_dict_to_json-645"><span class="linenos">645</span></a> <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'INFO'</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">'OBSDICT'</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">'description'</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
|
||||||
</span><span id="dump_dict_to_json-647"><a href="#dump_dict_to_json-647"><span class="linenos">647</span></a> <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">'OBSDICT'</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
</span><span id="dump_dict_to_json-646"><a href="#dump_dict_to_json-646"><span class="linenos">646</span></a> <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">'OBSDICT'</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
||||||
</span><span id="dump_dict_to_json-648"><a href="#dump_dict_to_json-648"><span class="linenos">648</span></a>
|
</span><span id="dump_dict_to_json-647"><a href="#dump_dict_to_json-647"><span class="linenos">647</span></a>
|
||||||
</span><span id="dump_dict_to_json-649"><a href="#dump_dict_to_json-649"><span class="linenos">649</span></a> <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
</span><span id="dump_dict_to_json-648"><a href="#dump_dict_to_json-648"><span class="linenos">648</span></a> <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -1415,45 +1413,45 @@ If True, the output is a gzipped json. If False, the output is a json file.</li>
|
||||||
|
|
||||||
</div>
|
</div>
|
||||||
<a class="headerlink" href="#load_json_dict"></a>
|
<a class="headerlink" href="#load_json_dict"></a>
|
||||||
<div class="pdoc-code codehilite"><pre><span></span><span id="load_json_dict-715"><a href="#load_json_dict-715"><span class="linenos">715</span></a><span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
|
<div class="pdoc-code codehilite"><pre><span></span><span id="load_json_dict-714"><a href="#load_json_dict-714"><span class="linenos">714</span></a><span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">'DICTOBS'</span><span class="p">):</span>
|
||||||
</span><span id="load_json_dict-716"><a href="#load_json_dict-716"><span class="linenos">716</span></a><span class="w"> </span><span class="sd">"""Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
|
</span><span id="load_json_dict-715"><a href="#load_json_dict-715"><span class="linenos">715</span></a><span class="w"> </span><span class="sd">"""Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
|
||||||
</span><span id="load_json_dict-717"><a href="#load_json_dict-717"><span class="linenos">717</span></a>
|
</span><span id="load_json_dict-716"><a href="#load_json_dict-716"><span class="linenos">716</span></a>
|
||||||
</span><span id="load_json_dict-718"><a href="#load_json_dict-718"><span class="linenos">718</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
</span><span id="load_json_dict-717"><a href="#load_json_dict-717"><span class="linenos">717</span></a><span class="sd"> The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
|
||||||
</span><span id="load_json_dict-719"><a href="#load_json_dict-719"><span class="linenos">719</span></a>
|
</span><span id="load_json_dict-718"><a href="#load_json_dict-718"><span class="linenos">718</span></a>
|
||||||
</span><span id="load_json_dict-720"><a href="#load_json_dict-720"><span class="linenos">720</span></a><span class="sd"> Parameters</span>
|
</span><span id="load_json_dict-719"><a href="#load_json_dict-719"><span class="linenos">719</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="load_json_dict-721"><a href="#load_json_dict-721"><span class="linenos">721</span></a><span class="sd"> ----------</span>
|
</span><span id="load_json_dict-720"><a href="#load_json_dict-720"><span class="linenos">720</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="load_json_dict-722"><a href="#load_json_dict-722"><span class="linenos">722</span></a><span class="sd"> fname : str</span>
|
</span><span id="load_json_dict-721"><a href="#load_json_dict-721"><span class="linenos">721</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="load_json_dict-723"><a href="#load_json_dict-723"><span class="linenos">723</span></a><span class="sd"> Filename of the input file.</span>
|
</span><span id="load_json_dict-722"><a href="#load_json_dict-722"><span class="linenos">722</span></a><span class="sd"> Filename of the input file.</span>
|
||||||
</span><span id="load_json_dict-724"><a href="#load_json_dict-724"><span class="linenos">724</span></a><span class="sd"> verbose : bool</span>
|
</span><span id="load_json_dict-723"><a href="#load_json_dict-723"><span class="linenos">723</span></a><span class="sd"> verbose : bool</span>
|
||||||
</span><span id="load_json_dict-725"><a href="#load_json_dict-725"><span class="linenos">725</span></a><span class="sd"> Print additional information that was written to the file.</span>
|
</span><span id="load_json_dict-724"><a href="#load_json_dict-724"><span class="linenos">724</span></a><span class="sd"> Print additional information that was written to the file.</span>
|
||||||
</span><span id="load_json_dict-726"><a href="#load_json_dict-726"><span class="linenos">726</span></a><span class="sd"> gz : bool</span>
|
</span><span id="load_json_dict-725"><a href="#load_json_dict-725"><span class="linenos">725</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="load_json_dict-727"><a href="#load_json_dict-727"><span class="linenos">727</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
</span><span id="load_json_dict-726"><a href="#load_json_dict-726"><span class="linenos">726</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
||||||
</span><span id="load_json_dict-728"><a href="#load_json_dict-728"><span class="linenos">728</span></a><span class="sd"> full_output : bool</span>
|
</span><span id="load_json_dict-727"><a href="#load_json_dict-727"><span class="linenos">727</span></a><span class="sd"> full_output : bool</span>
|
||||||
</span><span id="load_json_dict-729"><a href="#load_json_dict-729"><span class="linenos">729</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
|
</span><span id="load_json_dict-728"><a href="#load_json_dict-728"><span class="linenos">728</span></a><span class="sd"> If True, a dict containing auxiliary information and the data is returned.</span>
|
||||||
</span><span id="load_json_dict-730"><a href="#load_json_dict-730"><span class="linenos">730</span></a><span class="sd"> If False, only the data is returned.</span>
|
</span><span id="load_json_dict-729"><a href="#load_json_dict-729"><span class="linenos">729</span></a><span class="sd"> If False, only the data is returned.</span>
|
||||||
</span><span id="load_json_dict-731"><a href="#load_json_dict-731"><span class="linenos">731</span></a><span class="sd"> reps : str</span>
|
</span><span id="load_json_dict-730"><a href="#load_json_dict-730"><span class="linenos">730</span></a><span class="sd"> reps : str</span>
|
||||||
</span><span id="load_json_dict-732"><a href="#load_json_dict-732"><span class="linenos">732</span></a><span class="sd"> Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
|
</span><span id="load_json_dict-731"><a href="#load_json_dict-731"><span class="linenos">731</span></a><span class="sd"> Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
|
||||||
</span><span id="load_json_dict-733"><a href="#load_json_dict-733"><span class="linenos">733</span></a>
|
</span><span id="load_json_dict-732"><a href="#load_json_dict-732"><span class="linenos">732</span></a>
|
||||||
</span><span id="load_json_dict-734"><a href="#load_json_dict-734"><span class="linenos">734</span></a><span class="sd"> Returns</span>
|
</span><span id="load_json_dict-733"><a href="#load_json_dict-733"><span class="linenos">733</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="load_json_dict-735"><a href="#load_json_dict-735"><span class="linenos">735</span></a><span class="sd"> -------</span>
|
</span><span id="load_json_dict-734"><a href="#load_json_dict-734"><span class="linenos">734</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="load_json_dict-736"><a href="#load_json_dict-736"><span class="linenos">736</span></a><span class="sd"> data : Obs / list / Corr</span>
|
</span><span id="load_json_dict-735"><a href="#load_json_dict-735"><span class="linenos">735</span></a><span class="sd"> data : Obs / list / Corr</span>
|
||||||
</span><span id="load_json_dict-737"><a href="#load_json_dict-737"><span class="linenos">737</span></a><span class="sd"> Read data</span>
|
</span><span id="load_json_dict-736"><a href="#load_json_dict-736"><span class="linenos">736</span></a><span class="sd"> Read data</span>
|
||||||
</span><span id="load_json_dict-738"><a href="#load_json_dict-738"><span class="linenos">738</span></a><span class="sd"> or</span>
|
</span><span id="load_json_dict-737"><a href="#load_json_dict-737"><span class="linenos">737</span></a><span class="sd"> or</span>
|
||||||
</span><span id="load_json_dict-739"><a href="#load_json_dict-739"><span class="linenos">739</span></a><span class="sd"> data : dict</span>
|
</span><span id="load_json_dict-738"><a href="#load_json_dict-738"><span class="linenos">738</span></a><span class="sd"> data : dict</span>
|
||||||
</span><span id="load_json_dict-740"><a href="#load_json_dict-740"><span class="linenos">740</span></a><span class="sd"> Read data and meta-data</span>
|
</span><span id="load_json_dict-739"><a href="#load_json_dict-739"><span class="linenos">739</span></a><span class="sd"> Read data and meta-data</span>
|
||||||
</span><span id="load_json_dict-741"><a href="#load_json_dict-741"><span class="linenos">741</span></a><span class="sd"> """</span>
|
</span><span id="load_json_dict-740"><a href="#load_json_dict-740"><span class="linenos">740</span></a><span class="sd"> """</span>
|
||||||
</span><span id="load_json_dict-742"><a href="#load_json_dict-742"><span class="linenos">742</span></a> <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
|
</span><span id="load_json_dict-741"><a href="#load_json_dict-741"><span class="linenos">741</span></a> <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
|
||||||
</span><span id="load_json_dict-743"><a href="#load_json_dict-743"><span class="linenos">743</span></a> <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'description'</span><span class="p">]</span>
|
</span><span id="load_json_dict-742"><a href="#load_json_dict-742"><span class="linenos">742</span></a> <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'description'</span><span class="p">]</span>
|
||||||
</span><span id="load_json_dict-744"><a href="#load_json_dict-744"><span class="linenos">744</span></a> <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'OBSDICT'</span><span class="p">]</span>
|
</span><span id="load_json_dict-743"><a href="#load_json_dict-743"><span class="linenos">743</span></a> <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">][</span><span class="s1">'OBSDICT'</span><span class="p">]</span>
|
||||||
</span><span id="load_json_dict-745"><a href="#load_json_dict-745"><span class="linenos">745</span></a> <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span>
|
</span><span id="load_json_dict-744"><a href="#load_json_dict-744"><span class="linenos">744</span></a> <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span>
|
||||||
</span><span id="load_json_dict-746"><a href="#load_json_dict-746"><span class="linenos">746</span></a> <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
</span><span id="load_json_dict-745"><a href="#load_json_dict-745"><span class="linenos">745</span></a> <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
|
||||||
</span><span id="load_json_dict-747"><a href="#load_json_dict-747"><span class="linenos">747</span></a>
|
</span><span id="load_json_dict-746"><a href="#load_json_dict-746"><span class="linenos">746</span></a>
|
||||||
</span><span id="load_json_dict-748"><a href="#load_json_dict-748"><span class="linenos">748</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
|
</span><span id="load_json_dict-747"><a href="#load_json_dict-747"><span class="linenos">747</span></a> <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
|
||||||
</span><span id="load_json_dict-749"><a href="#load_json_dict-749"><span class="linenos">749</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
|
</span><span id="load_json_dict-748"><a href="#load_json_dict-748"><span class="linenos">748</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'description'</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
|
||||||
</span><span id="load_json_dict-750"><a href="#load_json_dict-750"><span class="linenos">750</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
|
</span><span id="load_json_dict-749"><a href="#load_json_dict-749"><span class="linenos">749</span></a> <span class="n">indata</span><span class="p">[</span><span class="s1">'obsdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
|
||||||
</span><span id="load_json_dict-751"><a href="#load_json_dict-751"><span class="linenos">751</span></a> <span class="k">return</span> <span class="n">indata</span>
|
</span><span id="load_json_dict-750"><a href="#load_json_dict-750"><span class="linenos">750</span></a> <span class="k">return</span> <span class="n">indata</span>
|
||||||
</span><span id="load_json_dict-752"><a href="#load_json_dict-752"><span class="linenos">752</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="load_json_dict-751"><a href="#load_json_dict-751"><span class="linenos">751</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
</span><span id="load_json_dict-753"><a href="#load_json_dict-753"><span class="linenos">753</span></a> <span class="k">return</span> <span class="n">od</span>
|
</span><span id="load_json_dict-752"><a href="#load_json_dict-752"><span class="linenos">752</span></a> <span class="k">return</span> <span class="n">od</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -92,178 +92,198 @@
|
||||||
</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
|
</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
|
||||||
</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="kn">from</span> <span class="nn">..correlators</span> <span class="kn">import</span> <span class="n">Corr</span>
|
</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="kn">from</span> <span class="nn">..correlators</span> <span class="kn">import</span> <span class="n">Corr</span>
|
||||||
</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a><span class="kn">from</span> <span class="nn">.json</span> <span class="kn">import</span> <span class="n">create_json_string</span><span class="p">,</span> <span class="n">import_json_string</span>
|
</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a><span class="kn">from</span> <span class="nn">.json</span> <span class="kn">import</span> <span class="n">create_json_string</span><span class="p">,</span> <span class="n">import_json_string</span>
|
||||||
</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a>
|
</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
|
||||||
</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a>
|
</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a>
|
||||||
</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="k">def</span> <span class="nf">to_sql</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">table_name</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="s1">'fail'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a>
|
||||||
</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="w"> </span><span class="sd">"""Write DataFrame including Obs or Corr valued columns to sqlite database.</span>
|
</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="k">def</span> <span class="nf">to_sql</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">table_name</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="s1">'fail'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
||||||
</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a>
|
</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="w"> </span><span class="sd">"""Write DataFrame including Obs or Corr valued columns to sqlite database.</span>
|
||||||
</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a>
|
||||||
</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd"> ----------</span>
|
</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd"> df : pandas.DataFrame</span>
|
</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd"> Dataframe to be written to the database.</span>
|
</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd"> df : pandas.DataFrame</span>
|
||||||
</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="sd"> table_name : str</span>
|
</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="sd"> Dataframe to be written to the database.</span>
|
||||||
</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="sd"> Name of the table in the database.</span>
|
</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="sd"> table_name : str</span>
|
||||||
</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd"> db : str</span>
|
</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd"> Name of the table in the database.</span>
|
||||||
</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd"> Path to the sqlite database.</span>
|
</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd"> db : str</span>
|
||||||
</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd"> if exists : str</span>
|
</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd"> Path to the sqlite database.</span>
|
||||||
</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="sd"> How to behave if table already exists. Options 'fail', 'replace', 'append'.</span>
|
</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="sd"> if exists : str</span>
|
||||||
</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="sd"> gz : bool</span>
|
</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="sd"> How to behave if table already exists. Options 'fail', 'replace', 'append'.</span>
|
||||||
</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="sd"> If True the json strings are gzipped.</span>
|
</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a>
|
</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="sd"> If True the json strings are gzipped.</span>
|
||||||
</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a><span class="sd"> Returns</span>
|
</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>
|
||||||
</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a><span class="sd"> -------</span>
|
</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="sd"> None</span>
|
</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a><span class="sd"> """</span>
|
</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a><span class="sd"> None</span>
|
||||||
</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a> <span class="n">se_df</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a> <span class="n">se_df</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
||||||
</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a> <span class="n">se_df</span><span class="o">.</span><span class="n">to_sql</span><span class="p">(</span><span class="n">table_name</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="n">if_exists</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
||||||
</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a> <span class="n">se_df</span><span class="o">.</span><span class="n">to_sql</span><span class="p">(</span><span class="n">table_name</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="n">if_exists</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
||||||
</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>
|
</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
||||||
</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>
|
</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>
|
||||||
</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a><span class="k">def</span> <span class="nf">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>
|
||||||
</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a><span class="w"> </span><span class="sd">"""Execute SQL query on sqlite database and obtain DataFrame including Obs or Corr valued columns.</span>
|
</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a><span class="k">def</span> <span class="nf">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
||||||
</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>
|
</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a><span class="w"> </span><span class="sd">"""Execute SQL query on sqlite database and obtain DataFrame including Obs or Corr valued columns.</span>
|
||||||
</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>
|
||||||
</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a><span class="sd"> ----------</span>
|
</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a><span class="sd"> sql : str</span>
|
</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a><span class="sd"> SQL query to be executed.</span>
|
</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a><span class="sd"> sql : str</span>
|
||||||
</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a><span class="sd"> db : str</span>
|
</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a><span class="sd"> SQL query to be executed.</span>
|
||||||
</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a><span class="sd"> Path to the sqlite database.</span>
|
</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a><span class="sd"> db : str</span>
|
||||||
</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a><span class="sd"> auto_gamma : bool</span>
|
</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a><span class="sd"> Path to the sqlite database.</span>
|
||||||
</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a><span class="sd"> auto_gamma : bool</span>
|
||||||
</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a><span class="sd"> the error analysis. Default False.</span>
|
</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
||||||
</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>
|
</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a><span class="sd"> the error analysis. Default False.</span>
|
||||||
</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a><span class="sd"> Returns</span>
|
</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>
|
||||||
</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a><span class="sd"> -------</span>
|
</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a><span class="sd"> data : pandas.DataFrame</span>
|
</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a><span class="sd"> data : pandas.DataFrame</span>
|
||||||
</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a><span class="sd"> """</span>
|
</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
||||||
</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a> <span class="n">extract_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
||||||
</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a> <span class="n">extract_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
||||||
</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">extract_df</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
||||||
</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>
|
</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">extract_df</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
||||||
</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>
|
</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>
|
||||||
</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a><span class="k">def</span> <span class="nf">dump_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>
|
||||||
</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a><span class="w"> </span><span class="sd">"""Exports a pandas DataFrame containing Obs valued columns to a (gzipped) csv file.</span>
|
</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a><span class="k">def</span> <span class="nf">dump_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
||||||
</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>
|
</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a><span class="w"> </span><span class="sd">"""Exports a pandas DataFrame containing Obs valued columns to a (gzipped) csv file.</span>
|
||||||
</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a><span class="sd"> Before making use of pandas to_csv functionality Obs objects are serialized via the standardized</span>
|
</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>
|
||||||
</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a><span class="sd"> json format of pyerrors.</span>
|
</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a><span class="sd"> Before making use of pandas to_csv functionality Obs objects are serialized via the standardized</span>
|
||||||
</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>
|
</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a><span class="sd"> json format of pyerrors.</span>
|
||||||
</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>
|
||||||
</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a><span class="sd"> ----------</span>
|
</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a><span class="sd"> df : pandas.DataFrame</span>
|
</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a><span class="sd"> Dataframe to be dumped to a file.</span>
|
</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a><span class="sd"> df : pandas.DataFrame</span>
|
||||||
</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a><span class="sd"> fname : str</span>
|
</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a><span class="sd"> Dataframe to be dumped to a file.</span>
|
||||||
</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a><span class="sd"> Filename of the output file.</span>
|
</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a><span class="sd"> gz : bool</span>
|
</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a><span class="sd"> Filename of the output file.</span>
|
||||||
</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a><span class="sd"> If True, the output is a gzipped csv file. If False, the output is a csv file.</span>
|
</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>
|
</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a><span class="sd"> If True, the output is a gzipped csv file. If False, the output is a csv file.</span>
|
||||||
</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a><span class="sd"> Returns</span>
|
</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>
|
||||||
</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a><span class="sd"> -------</span>
|
</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a><span class="sd"> None</span>
|
</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a><span class="sd"> """</span>
|
</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a><span class="sd"> None</span>
|
||||||
</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a> <span class="n">out</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>
|
</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a> <span class="k">for</span> <span class="n">column</span> <span class="ow">in</span> <span class="n">df</span><span class="p">:</span>
|
||||||
</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">):</span>
|
</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="n">_need_to_serialize</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">])</span>
|
||||||
</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">serialize</span><span class="p">:</span>
|
||||||
</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>
|
</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a> <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">integer</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">floating</span><span class="p">))</span> <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]):</span>
|
||||||
</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a> <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">entry</span><span class="p">)</span> <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]]):</span>
|
||||||
</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"nan value in column "</span> <span class="o">+</span> <span class="n">column</span> <span class="o">+</span> <span class="s2">" will be replaced by None"</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
||||||
</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>
|
||||||
</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">compression</span><span class="o">=</span><span class="s1">'gzip'</span><span class="p">)</span>
|
</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a> <span class="n">out</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>
|
||||||
</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">):</span>
|
||||||
</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>
|
</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
||||||
</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>
|
</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>
|
||||||
</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a><span class="k">def</span> <span class="nf">load_df</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||||
</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a><span class="w"> </span><span class="sd">"""Imports a pandas DataFrame from a csv.(gz) file in which Obs objects are serialized as json strings.</span>
|
</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>
|
</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
||||||
</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">compression</span><span class="o">=</span><span class="s1">'gzip'</span><span class="p">)</span>
|
||||||
</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a><span class="sd"> ----------</span>
|
</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a><span class="sd"> fname : str</span>
|
</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a><span class="sd"> Filename of the input file.</span>
|
</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>
|
||||||
</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a><span class="sd"> auto_gamma : bool</span>
|
</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>
|
||||||
</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a><span class="k">def</span> <span class="nf">load_df</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
||||||
</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a><span class="sd"> the error analysis. Default False.</span>
|
</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a><span class="w"> </span><span class="sd">"""Imports a pandas DataFrame from a csv.(gz) file in which Obs objects are serialized as json strings.</span>
|
||||||
</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a><span class="sd"> gz : bool</span>
|
</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>
|
||||||
</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>
|
</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a><span class="sd"> Returns</span>
|
</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a><span class="sd"> -------</span>
|
</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a><span class="sd"> Filename of the input file.</span>
|
||||||
</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a><span class="sd"> data : pandas.DataFrame</span>
|
</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a><span class="sd"> auto_gamma : bool</span>
|
||||||
</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
||||||
</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a><span class="sd"> """</span>
|
</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a><span class="sd"> the error analysis. Default False.</span>
|
||||||
</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
||||||
</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>
|
</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>
|
||||||
</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a><span class="sd"> data : pandas.DataFrame</span>
|
||||||
</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
|
</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
||||||
</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
|
</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
||||||
</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>
|
||||||
</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span>
|
</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||||
</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>
|
</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">re_import</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
||||||
</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>
|
</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
|
||||||
</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>
|
</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">keep_default_na</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a><span class="k">def</span> <span class="nf">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
|
</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a><span class="w"> </span><span class="sd">"""Serializes all Obs or Corr valued columns into json strings according to the pyerrors json specification.</span>
|
</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a>
|
</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
||||||
</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">keep_default_na</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a><span class="sd"> ----------</span>
|
</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a>
|
||||||
</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a><span class="sd"> df : pandas.DataFrame</span>
|
</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">re_import</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
||||||
</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a><span class="sd"> DataFrame to be serilized.</span>
|
</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a>
|
||||||
</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a><span class="sd"> gz: bool</span>
|
</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>
|
||||||
</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a><span class="sd"> gzip the json string representation. Default False.</span>
|
</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a><span class="k">def</span> <span class="nf">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
|
||||||
</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a><span class="sd"> """</span>
|
</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a><span class="w"> </span><span class="sd">"""Serializes all Obs or Corr valued columns into json strings according to the pyerrors json specification.</span>
|
||||||
</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a> <span class="n">out</span> <span class="o">=</span> <span class="n">df</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
|
</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a>
|
||||||
</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a> <span class="k">for</span> <span class="n">column</span> <span class="ow">in</span> <span class="n">out</span><span class="p">:</span>
|
</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="kc">False</span>
|
</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)):</span>
|
</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a><span class="sd"> df : pandas.DataFrame</span>
|
||||||
</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="kc">True</span>
|
</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a><span class="sd"> DataFrame to be serilized.</span>
|
||||||
</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="nb">list</span><span class="p">):</span>
|
</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a><span class="sd"> gz: bool</span>
|
||||||
</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a> <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">]):</span>
|
</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a><span class="sd"> gzip the json string representation. Default False.</span>
|
||||||
</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="kc">True</span>
|
</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a>
|
</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a> <span class="n">out</span> <span class="o">=</span> <span class="n">df</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
|
||||||
</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a> <span class="k">if</span> <span class="n">serialize</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a> <span class="k">for</span> <span class="n">column</span> <span class="ow">in</span> <span class="n">out</span><span class="p">:</span>
|
||||||
</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">create_json_string</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span>
|
</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="n">_need_to_serialize</span><span class="p">(</span><span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">])</span>
|
||||||
</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a>
|
||||||
</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">gzip</span><span class="o">.</span><span class="n">compress</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">)))</span>
|
</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a> <span class="k">if</span> <span class="n">serialize</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||||
</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a> <span class="k">return</span> <span class="n">out</span>
|
</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">create_json_string</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span><span class="p">)</span>
|
||||||
</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a>
|
</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||||
</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a>
|
</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">out</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">gzip</span><span class="o">.</span><span class="n">compress</span><span class="p">((</span><span class="n">x</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="s1">''</span><span class="p">)</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">)))</span>
|
||||||
</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a><span class="k">def</span> <span class="nf">_deserialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
|
</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a> <span class="k">return</span> <span class="n">out</span>
|
||||||
</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a><span class="w"> </span><span class="sd">"""Deserializes all pyerrors json strings into Obs or Corr objects according to the pyerrors json specification.</span>
|
</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a>
|
||||||
</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a>
|
</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a>
|
||||||
</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a><span class="sd"> Parameters</span>
|
</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a><span class="k">def</span> <span class="nf">_deserialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
|
||||||
</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a><span class="sd"> ----------</span>
|
</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a><span class="w"> </span><span class="sd">"""Deserializes all pyerrors json strings into Obs or Corr objects according to the pyerrors json specification.</span>
|
||||||
</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a><span class="sd"> df : pandas.DataFrame</span>
|
</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a>
|
||||||
</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a><span class="sd"> DataFrame to be deserilized.</span>
|
</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a><span class="sd"> auto_gamma : bool</span>
|
</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a><span class="sd"> df : pandas.DataFrame</span>
|
||||||
</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a><span class="sd"> the error analysis. Default False.</span>
|
</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a><span class="sd"> DataFrame to be deserilized.</span>
|
||||||
</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>
|
</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a><span class="sd"> auto_gamma : bool</span>
|
||||||
</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a><span class="sd"> Notes:</span>
|
</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
||||||
</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a><span class="sd"> ------</span>
|
</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a><span class="sd"> the error analysis. Default False.</span>
|
||||||
</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a><span class="sd"> In case any column of the DataFrame is gzipped it is gunzipped in the process.</span>
|
</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a>
|
||||||
</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a><span class="sd"> """</span>
|
</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a><span class="sd"> Notes:</span>
|
||||||
</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a> <span class="k">for</span> <span class="n">column</span> <span class="ow">in</span> <span class="n">df</span><span class="o">.</span><span class="n">select_dtypes</span><span class="p">(</span><span class="n">include</span><span class="o">=</span><span class="s2">"object"</span><span class="p">):</span>
|
</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a><span class="sd"> ------</span>
|
||||||
</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="nb">bytes</span><span class="p">):</span>
|
</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a><span class="sd"> In case any column of the DataFrame is gzipped it is gunzipped in the process.</span>
|
||||||
</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a> <span class="k">if</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="sa">b</span><span class="s2">"</span><span class="se">\x1f\x8b\x08\x00</span><span class="s2">"</span><span class="p">):</span>
|
</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a><span class="sd"> """</span>
|
||||||
</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">gzip</span><span class="o">.</span><span class="n">decompress</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">))</span>
|
</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a> <span class="k">for</span> <span class="n">column</span> <span class="ow">in</span> <span class="n">df</span><span class="o">.</span><span class="n">select_dtypes</span><span class="p">(</span><span class="n">include</span><span class="o">=</span><span class="s2">"object"</span><span class="p">):</span>
|
||||||
</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
|
</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="nb">bytes</span><span class="p">):</span>
|
||||||
</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a> <span class="k">if</span> <span class="s1">'"program":'</span> <span class="ow">in</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">][:</span><span class="mi">20</span><span class="p">]:</span>
|
</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a> <span class="k">if</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="sa">b</span><span class="s2">"</span><span class="se">\x1f\x8b\x08\x00</span><span class="s2">"</span><span class="p">):</span>
|
||||||
</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">import_json_string</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">))</span>
|
</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">gzip</span><span class="o">.</span><span class="n">decompress</span><span class="p">(</span><span class="n">x</span><span class="p">)</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">'utf-8'</span><span class="p">))</span>
|
||||||
</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a> <span class="k">if</span> <span class="n">auto_gamma</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a> <span class="n">df</span> <span class="o">=</span> <span class="n">df</span><span class="o">.</span><span class="n">replace</span><span class="p">({</span><span class="sa">r</span><span class="s1">'^$'</span><span class="p">:</span> <span class="kc">None</span><span class="p">},</span> <span class="n">regex</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
|
||||||
</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="nb">list</span><span class="p">):</span>
|
</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a> <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
|
||||||
</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gm</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">x</span><span class="p">])</span>
|
</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a> <span class="k">while</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
|
||||||
</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a> <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||||
</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">())</span>
|
</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="n">i</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
|
||||||
</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a> <span class="k">return</span> <span class="n">df</span>
|
</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a> <span class="k">if</span> <span class="s1">'"program":'</span> <span class="ow">in</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="n">i</span><span class="p">][:</span><span class="mi">20</span><span class="p">]:</span>
|
||||||
|
</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span> <span class="o">=</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">transform</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">import_json_string</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span><span class="p">)</span>
|
||||||
|
</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a> <span class="k">if</span> <span class="n">auto_gamma</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||||
|
</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">][</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">):</span>
|
||||||
|
</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gm</span><span class="p">()</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">x</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">x</span><span class="p">])</span>
|
||||||
|
</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
|
</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]</span><span class="o">.</span><span class="n">apply</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">gm</span><span class="p">()</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">x</span><span class="p">)</span>
|
||||||
|
</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a> <span class="k">return</span> <span class="n">df</span>
|
||||||
|
</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a>
|
||||||
|
</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>
|
||||||
|
</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a><span class="k">def</span> <span class="nf">_need_to_serialize</span><span class="p">(</span><span class="n">col</span><span class="p">):</span>
|
||||||
|
</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="kc">False</span>
|
||||||
|
</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a> <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
|
||||||
|
</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a> <span class="k">while</span> <span class="n">col</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
|
||||||
|
</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a> <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||||
|
</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">col</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)):</span>
|
||||||
|
</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="kc">True</span>
|
||||||
|
</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a> <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">col</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">):</span>
|
||||||
|
</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a> <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">col</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
|
||||||
|
</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="kc">True</span>
|
||||||
|
</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a> <span class="k">return</span> <span class="n">serialize</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -279,30 +299,30 @@
|
||||||
|
|
||||||
</div>
|
</div>
|
||||||
<a class="headerlink" href="#to_sql"></a>
|
<a class="headerlink" href="#to_sql"></a>
|
||||||
<div class="pdoc-code codehilite"><pre><span></span><span id="to_sql-11"><a href="#to_sql-11"><span class="linenos">11</span></a><span class="k">def</span> <span class="nf">to_sql</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">table_name</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="s1">'fail'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
<div class="pdoc-code codehilite"><pre><span></span><span id="to_sql-12"><a href="#to_sql-12"><span class="linenos">12</span></a><span class="k">def</span> <span class="nf">to_sql</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">table_name</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="s1">'fail'</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
||||||
</span><span id="to_sql-12"><a href="#to_sql-12"><span class="linenos">12</span></a><span class="w"> </span><span class="sd">"""Write DataFrame including Obs or Corr valued columns to sqlite database.</span>
|
</span><span id="to_sql-13"><a href="#to_sql-13"><span class="linenos">13</span></a><span class="w"> </span><span class="sd">"""Write DataFrame including Obs or Corr valued columns to sqlite database.</span>
|
||||||
</span><span id="to_sql-13"><a href="#to_sql-13"><span class="linenos">13</span></a>
|
</span><span id="to_sql-14"><a href="#to_sql-14"><span class="linenos">14</span></a>
|
||||||
</span><span id="to_sql-14"><a href="#to_sql-14"><span class="linenos">14</span></a><span class="sd"> Parameters</span>
|
</span><span id="to_sql-15"><a href="#to_sql-15"><span class="linenos">15</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="to_sql-15"><a href="#to_sql-15"><span class="linenos">15</span></a><span class="sd"> ----------</span>
|
</span><span id="to_sql-16"><a href="#to_sql-16"><span class="linenos">16</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="to_sql-16"><a href="#to_sql-16"><span class="linenos">16</span></a><span class="sd"> df : pandas.DataFrame</span>
|
</span><span id="to_sql-17"><a href="#to_sql-17"><span class="linenos">17</span></a><span class="sd"> df : pandas.DataFrame</span>
|
||||||
</span><span id="to_sql-17"><a href="#to_sql-17"><span class="linenos">17</span></a><span class="sd"> Dataframe to be written to the database.</span>
|
</span><span id="to_sql-18"><a href="#to_sql-18"><span class="linenos">18</span></a><span class="sd"> Dataframe to be written to the database.</span>
|
||||||
</span><span id="to_sql-18"><a href="#to_sql-18"><span class="linenos">18</span></a><span class="sd"> table_name : str</span>
|
</span><span id="to_sql-19"><a href="#to_sql-19"><span class="linenos">19</span></a><span class="sd"> table_name : str</span>
|
||||||
</span><span id="to_sql-19"><a href="#to_sql-19"><span class="linenos">19</span></a><span class="sd"> Name of the table in the database.</span>
|
</span><span id="to_sql-20"><a href="#to_sql-20"><span class="linenos">20</span></a><span class="sd"> Name of the table in the database.</span>
|
||||||
</span><span id="to_sql-20"><a href="#to_sql-20"><span class="linenos">20</span></a><span class="sd"> db : str</span>
|
</span><span id="to_sql-21"><a href="#to_sql-21"><span class="linenos">21</span></a><span class="sd"> db : str</span>
|
||||||
</span><span id="to_sql-21"><a href="#to_sql-21"><span class="linenos">21</span></a><span class="sd"> Path to the sqlite database.</span>
|
</span><span id="to_sql-22"><a href="#to_sql-22"><span class="linenos">22</span></a><span class="sd"> Path to the sqlite database.</span>
|
||||||
</span><span id="to_sql-22"><a href="#to_sql-22"><span class="linenos">22</span></a><span class="sd"> if exists : str</span>
|
</span><span id="to_sql-23"><a href="#to_sql-23"><span class="linenos">23</span></a><span class="sd"> if exists : str</span>
|
||||||
</span><span id="to_sql-23"><a href="#to_sql-23"><span class="linenos">23</span></a><span class="sd"> How to behave if table already exists. Options 'fail', 'replace', 'append'.</span>
|
</span><span id="to_sql-24"><a href="#to_sql-24"><span class="linenos">24</span></a><span class="sd"> How to behave if table already exists. Options 'fail', 'replace', 'append'.</span>
|
||||||
</span><span id="to_sql-24"><a href="#to_sql-24"><span class="linenos">24</span></a><span class="sd"> gz : bool</span>
|
</span><span id="to_sql-25"><a href="#to_sql-25"><span class="linenos">25</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="to_sql-25"><a href="#to_sql-25"><span class="linenos">25</span></a><span class="sd"> If True the json strings are gzipped.</span>
|
</span><span id="to_sql-26"><a href="#to_sql-26"><span class="linenos">26</span></a><span class="sd"> If True the json strings are gzipped.</span>
|
||||||
</span><span id="to_sql-26"><a href="#to_sql-26"><span class="linenos">26</span></a>
|
</span><span id="to_sql-27"><a href="#to_sql-27"><span class="linenos">27</span></a>
|
||||||
</span><span id="to_sql-27"><a href="#to_sql-27"><span class="linenos">27</span></a><span class="sd"> Returns</span>
|
</span><span id="to_sql-28"><a href="#to_sql-28"><span class="linenos">28</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="to_sql-28"><a href="#to_sql-28"><span class="linenos">28</span></a><span class="sd"> -------</span>
|
</span><span id="to_sql-29"><a href="#to_sql-29"><span class="linenos">29</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="to_sql-29"><a href="#to_sql-29"><span class="linenos">29</span></a><span class="sd"> None</span>
|
</span><span id="to_sql-30"><a href="#to_sql-30"><span class="linenos">30</span></a><span class="sd"> None</span>
|
||||||
</span><span id="to_sql-30"><a href="#to_sql-30"><span class="linenos">30</span></a><span class="sd"> """</span>
|
</span><span id="to_sql-31"><a href="#to_sql-31"><span class="linenos">31</span></a><span class="sd"> """</span>
|
||||||
</span><span id="to_sql-31"><a href="#to_sql-31"><span class="linenos">31</span></a> <span class="n">se_df</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
</span><span id="to_sql-32"><a href="#to_sql-32"><span class="linenos">32</span></a> <span class="n">se_df</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
|
||||||
</span><span id="to_sql-32"><a href="#to_sql-32"><span class="linenos">32</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
</span><span id="to_sql-33"><a href="#to_sql-33"><span class="linenos">33</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
||||||
</span><span id="to_sql-33"><a href="#to_sql-33"><span class="linenos">33</span></a> <span class="n">se_df</span><span class="o">.</span><span class="n">to_sql</span><span class="p">(</span><span class="n">table_name</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="n">if_exists</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
</span><span id="to_sql-34"><a href="#to_sql-34"><span class="linenos">34</span></a> <span class="n">se_df</span><span class="o">.</span><span class="n">to_sql</span><span class="p">(</span><span class="n">table_name</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="n">if_exists</span><span class="o">=</span><span class="n">if_exists</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
||||||
</span><span id="to_sql-34"><a href="#to_sql-34"><span class="linenos">34</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
</span><span id="to_sql-35"><a href="#to_sql-35"><span class="linenos">35</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -343,28 +363,28 @@ If True the json strings are gzipped.</li>
|
||||||
|
|
||||||
</div>
|
</div>
|
||||||
<a class="headerlink" href="#read_sql"></a>
|
<a class="headerlink" href="#read_sql"></a>
|
||||||
<div class="pdoc-code codehilite"><pre><span></span><span id="read_sql-37"><a href="#read_sql-37"><span class="linenos">37</span></a><span class="k">def</span> <span class="nf">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
<div class="pdoc-code codehilite"><pre><span></span><span id="read_sql-38"><a href="#read_sql-38"><span class="linenos">38</span></a><span class="k">def</span> <span class="nf">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">db</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
|
||||||
</span><span id="read_sql-38"><a href="#read_sql-38"><span class="linenos">38</span></a><span class="w"> </span><span class="sd">"""Execute SQL query on sqlite database and obtain DataFrame including Obs or Corr valued columns.</span>
|
</span><span id="read_sql-39"><a href="#read_sql-39"><span class="linenos">39</span></a><span class="w"> </span><span class="sd">"""Execute SQL query on sqlite database and obtain DataFrame including Obs or Corr valued columns.</span>
|
||||||
</span><span id="read_sql-39"><a href="#read_sql-39"><span class="linenos">39</span></a>
|
</span><span id="read_sql-40"><a href="#read_sql-40"><span class="linenos">40</span></a>
|
||||||
</span><span id="read_sql-40"><a href="#read_sql-40"><span class="linenos">40</span></a><span class="sd"> Parameters</span>
|
</span><span id="read_sql-41"><a href="#read_sql-41"><span class="linenos">41</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="read_sql-41"><a href="#read_sql-41"><span class="linenos">41</span></a><span class="sd"> ----------</span>
|
</span><span id="read_sql-42"><a href="#read_sql-42"><span class="linenos">42</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="read_sql-42"><a href="#read_sql-42"><span class="linenos">42</span></a><span class="sd"> sql : str</span>
|
</span><span id="read_sql-43"><a href="#read_sql-43"><span class="linenos">43</span></a><span class="sd"> sql : str</span>
|
||||||
</span><span id="read_sql-43"><a href="#read_sql-43"><span class="linenos">43</span></a><span class="sd"> SQL query to be executed.</span>
|
</span><span id="read_sql-44"><a href="#read_sql-44"><span class="linenos">44</span></a><span class="sd"> SQL query to be executed.</span>
|
||||||
</span><span id="read_sql-44"><a href="#read_sql-44"><span class="linenos">44</span></a><span class="sd"> db : str</span>
|
</span><span id="read_sql-45"><a href="#read_sql-45"><span class="linenos">45</span></a><span class="sd"> db : str</span>
|
||||||
</span><span id="read_sql-45"><a href="#read_sql-45"><span class="linenos">45</span></a><span class="sd"> Path to the sqlite database.</span>
|
</span><span id="read_sql-46"><a href="#read_sql-46"><span class="linenos">46</span></a><span class="sd"> Path to the sqlite database.</span>
|
||||||
</span><span id="read_sql-46"><a href="#read_sql-46"><span class="linenos">46</span></a><span class="sd"> auto_gamma : bool</span>
|
</span><span id="read_sql-47"><a href="#read_sql-47"><span class="linenos">47</span></a><span class="sd"> auto_gamma : bool</span>
|
||||||
</span><span id="read_sql-47"><a href="#read_sql-47"><span class="linenos">47</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
</span><span id="read_sql-48"><a href="#read_sql-48"><span class="linenos">48</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
||||||
</span><span id="read_sql-48"><a href="#read_sql-48"><span class="linenos">48</span></a><span class="sd"> the error analysis. Default False.</span>
|
</span><span id="read_sql-49"><a href="#read_sql-49"><span class="linenos">49</span></a><span class="sd"> the error analysis. Default False.</span>
|
||||||
</span><span id="read_sql-49"><a href="#read_sql-49"><span class="linenos">49</span></a>
|
</span><span id="read_sql-50"><a href="#read_sql-50"><span class="linenos">50</span></a>
|
||||||
</span><span id="read_sql-50"><a href="#read_sql-50"><span class="linenos">50</span></a><span class="sd"> Returns</span>
|
</span><span id="read_sql-51"><a href="#read_sql-51"><span class="linenos">51</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="read_sql-51"><a href="#read_sql-51"><span class="linenos">51</span></a><span class="sd"> -------</span>
|
</span><span id="read_sql-52"><a href="#read_sql-52"><span class="linenos">52</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="read_sql-52"><a href="#read_sql-52"><span class="linenos">52</span></a><span class="sd"> data : pandas.DataFrame</span>
|
</span><span id="read_sql-53"><a href="#read_sql-53"><span class="linenos">53</span></a><span class="sd"> data : pandas.DataFrame</span>
|
||||||
</span><span id="read_sql-53"><a href="#read_sql-53"><span class="linenos">53</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
</span><span id="read_sql-54"><a href="#read_sql-54"><span class="linenos">54</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
||||||
</span><span id="read_sql-54"><a href="#read_sql-54"><span class="linenos">54</span></a><span class="sd"> """</span>
|
</span><span id="read_sql-55"><a href="#read_sql-55"><span class="linenos">55</span></a><span class="sd"> """</span>
|
||||||
</span><span id="read_sql-55"><a href="#read_sql-55"><span class="linenos">55</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
</span><span id="read_sql-56"><a href="#read_sql-56"><span class="linenos">56</span></a> <span class="n">con</span> <span class="o">=</span> <span class="n">sqlite3</span><span class="o">.</span><span class="n">connect</span><span class="p">(</span><span class="n">db</span><span class="p">)</span>
|
||||||
</span><span id="read_sql-56"><a href="#read_sql-56"><span class="linenos">56</span></a> <span class="n">extract_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
</span><span id="read_sql-57"><a href="#read_sql-57"><span class="linenos">57</span></a> <span class="n">extract_df</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_sql</span><span class="p">(</span><span class="n">sql</span><span class="p">,</span> <span class="n">con</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
|
||||||
</span><span id="read_sql-57"><a href="#read_sql-57"><span class="linenos">57</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
</span><span id="read_sql-58"><a href="#read_sql-58"><span class="linenos">58</span></a> <span class="n">con</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
|
||||||
</span><span id="read_sql-58"><a href="#read_sql-58"><span class="linenos">58</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">extract_df</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
</span><span id="read_sql-59"><a href="#read_sql-59"><span class="linenos">59</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">extract_df</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -403,36 +423,43 @@ Dataframe with the content of the sqlite database.</li>
|
||||||
|
|
||||||
</div>
|
</div>
|
||||||
<a class="headerlink" href="#dump_df"></a>
|
<a class="headerlink" href="#dump_df"></a>
|
||||||
<div class="pdoc-code codehilite"><pre><span></span><span id="dump_df-61"><a href="#dump_df-61"><span class="linenos">61</span></a><span class="k">def</span> <span class="nf">dump_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
<div class="pdoc-code codehilite"><pre><span></span><span id="dump_df-62"><a href="#dump_df-62"><span class="linenos">62</span></a><span class="k">def</span> <span class="nf">dump_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
||||||
</span><span id="dump_df-62"><a href="#dump_df-62"><span class="linenos">62</span></a><span class="w"> </span><span class="sd">"""Exports a pandas DataFrame containing Obs valued columns to a (gzipped) csv file.</span>
|
</span><span id="dump_df-63"><a href="#dump_df-63"><span class="linenos">63</span></a><span class="w"> </span><span class="sd">"""Exports a pandas DataFrame containing Obs valued columns to a (gzipped) csv file.</span>
|
||||||
</span><span id="dump_df-63"><a href="#dump_df-63"><span class="linenos">63</span></a>
|
</span><span id="dump_df-64"><a href="#dump_df-64"><span class="linenos">64</span></a>
|
||||||
</span><span id="dump_df-64"><a href="#dump_df-64"><span class="linenos">64</span></a><span class="sd"> Before making use of pandas to_csv functionality Obs objects are serialized via the standardized</span>
|
</span><span id="dump_df-65"><a href="#dump_df-65"><span class="linenos">65</span></a><span class="sd"> Before making use of pandas to_csv functionality Obs objects are serialized via the standardized</span>
|
||||||
</span><span id="dump_df-65"><a href="#dump_df-65"><span class="linenos">65</span></a><span class="sd"> json format of pyerrors.</span>
|
</span><span id="dump_df-66"><a href="#dump_df-66"><span class="linenos">66</span></a><span class="sd"> json format of pyerrors.</span>
|
||||||
</span><span id="dump_df-66"><a href="#dump_df-66"><span class="linenos">66</span></a>
|
</span><span id="dump_df-67"><a href="#dump_df-67"><span class="linenos">67</span></a>
|
||||||
</span><span id="dump_df-67"><a href="#dump_df-67"><span class="linenos">67</span></a><span class="sd"> Parameters</span>
|
</span><span id="dump_df-68"><a href="#dump_df-68"><span class="linenos">68</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="dump_df-68"><a href="#dump_df-68"><span class="linenos">68</span></a><span class="sd"> ----------</span>
|
</span><span id="dump_df-69"><a href="#dump_df-69"><span class="linenos">69</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="dump_df-69"><a href="#dump_df-69"><span class="linenos">69</span></a><span class="sd"> df : pandas.DataFrame</span>
|
</span><span id="dump_df-70"><a href="#dump_df-70"><span class="linenos">70</span></a><span class="sd"> df : pandas.DataFrame</span>
|
||||||
</span><span id="dump_df-70"><a href="#dump_df-70"><span class="linenos">70</span></a><span class="sd"> Dataframe to be dumped to a file.</span>
|
</span><span id="dump_df-71"><a href="#dump_df-71"><span class="linenos">71</span></a><span class="sd"> Dataframe to be dumped to a file.</span>
|
||||||
</span><span id="dump_df-71"><a href="#dump_df-71"><span class="linenos">71</span></a><span class="sd"> fname : str</span>
|
</span><span id="dump_df-72"><a href="#dump_df-72"><span class="linenos">72</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="dump_df-72"><a href="#dump_df-72"><span class="linenos">72</span></a><span class="sd"> Filename of the output file.</span>
|
</span><span id="dump_df-73"><a href="#dump_df-73"><span class="linenos">73</span></a><span class="sd"> Filename of the output file.</span>
|
||||||
</span><span id="dump_df-73"><a href="#dump_df-73"><span class="linenos">73</span></a><span class="sd"> gz : bool</span>
|
</span><span id="dump_df-74"><a href="#dump_df-74"><span class="linenos">74</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="dump_df-74"><a href="#dump_df-74"><span class="linenos">74</span></a><span class="sd"> If True, the output is a gzipped csv file. If False, the output is a csv file.</span>
|
</span><span id="dump_df-75"><a href="#dump_df-75"><span class="linenos">75</span></a><span class="sd"> If True, the output is a gzipped csv file. If False, the output is a csv file.</span>
|
||||||
</span><span id="dump_df-75"><a href="#dump_df-75"><span class="linenos">75</span></a>
|
</span><span id="dump_df-76"><a href="#dump_df-76"><span class="linenos">76</span></a>
|
||||||
</span><span id="dump_df-76"><a href="#dump_df-76"><span class="linenos">76</span></a><span class="sd"> Returns</span>
|
</span><span id="dump_df-77"><a href="#dump_df-77"><span class="linenos">77</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="dump_df-77"><a href="#dump_df-77"><span class="linenos">77</span></a><span class="sd"> -------</span>
|
</span><span id="dump_df-78"><a href="#dump_df-78"><span class="linenos">78</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="dump_df-78"><a href="#dump_df-78"><span class="linenos">78</span></a><span class="sd"> None</span>
|
</span><span id="dump_df-79"><a href="#dump_df-79"><span class="linenos">79</span></a><span class="sd"> None</span>
|
||||||
</span><span id="dump_df-79"><a href="#dump_df-79"><span class="linenos">79</span></a><span class="sd"> """</span>
|
</span><span id="dump_df-80"><a href="#dump_df-80"><span class="linenos">80</span></a><span class="sd"> """</span>
|
||||||
</span><span id="dump_df-80"><a href="#dump_df-80"><span class="linenos">80</span></a> <span class="n">out</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
</span><span id="dump_df-81"><a href="#dump_df-81"><span class="linenos">81</span></a> <span class="k">for</span> <span class="n">column</span> <span class="ow">in</span> <span class="n">df</span><span class="p">:</span>
|
||||||
</span><span id="dump_df-81"><a href="#dump_df-81"><span class="linenos">81</span></a>
|
</span><span id="dump_df-82"><a href="#dump_df-82"><span class="linenos">82</span></a> <span class="n">serialize</span> <span class="o">=</span> <span class="n">_need_to_serialize</span><span class="p">(</span><span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">])</span>
|
||||||
</span><span id="dump_df-82"><a href="#dump_df-82"><span class="linenos">82</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">):</span>
|
</span><span id="dump_df-83"><a href="#dump_df-83"><span class="linenos">83</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">serialize</span><span class="p">:</span>
|
||||||
</span><span id="dump_df-83"><a href="#dump_df-83"><span class="linenos">83</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
</span><span id="dump_df-84"><a href="#dump_df-84"><span class="linenos">84</span></a> <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">integer</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">floating</span><span class="p">))</span> <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]):</span>
|
||||||
</span><span id="dump_df-84"><a href="#dump_df-84"><span class="linenos">84</span></a>
|
</span><span id="dump_df-85"><a href="#dump_df-85"><span class="linenos">85</span></a> <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">entry</span><span class="p">)</span> <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">df</span><span class="p">[</span><span class="n">column</span><span class="p">]]):</span>
|
||||||
</span><span id="dump_df-85"><a href="#dump_df-85"><span class="linenos">85</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
</span><span id="dump_df-86"><a href="#dump_df-86"><span class="linenos">86</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"nan value in column "</span> <span class="o">+</span> <span class="n">column</span> <span class="o">+</span> <span class="s2">" will be replaced by None"</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
||||||
</span><span id="dump_df-86"><a href="#dump_df-86"><span class="linenos">86</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="dump_df-87"><a href="#dump_df-87"><span class="linenos">87</span></a>
|
||||||
</span><span id="dump_df-87"><a href="#dump_df-87"><span class="linenos">87</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
</span><span id="dump_df-88"><a href="#dump_df-88"><span class="linenos">88</span></a> <span class="n">out</span> <span class="o">=</span> <span class="n">_serialize_df</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
</span><span id="dump_df-88"><a href="#dump_df-88"><span class="linenos">88</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">compression</span><span class="o">=</span><span class="s1">'gzip'</span><span class="p">)</span>
|
</span><span id="dump_df-89"><a href="#dump_df-89"><span class="linenos">89</span></a>
|
||||||
</span><span id="dump_df-89"><a href="#dump_df-89"><span class="linenos">89</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="dump_df-90"><a href="#dump_df-90"><span class="linenos">90</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">):</span>
|
||||||
</span><span id="dump_df-90"><a href="#dump_df-90"><span class="linenos">90</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
</span><span id="dump_df-91"><a href="#dump_df-91"><span class="linenos">91</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
||||||
|
</span><span id="dump_df-92"><a href="#dump_df-92"><span class="linenos">92</span></a>
|
||||||
|
</span><span id="dump_df-93"><a href="#dump_df-93"><span class="linenos">93</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||||
|
</span><span id="dump_df-94"><a href="#dump_df-94"><span class="linenos">94</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
|
</span><span id="dump_df-95"><a href="#dump_df-95"><span class="linenos">95</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
||||||
|
</span><span id="dump_df-96"><a href="#dump_df-96"><span class="linenos">96</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">compression</span><span class="o">=</span><span class="s1">'gzip'</span><span class="p">)</span>
|
||||||
|
</span><span id="dump_df-97"><a href="#dump_df-97"><span class="linenos">97</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
|
</span><span id="dump_df-98"><a href="#dump_df-98"><span class="linenos">98</span></a> <span class="n">out</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -472,38 +499,38 @@ If True, the output is a gzipped csv file. If False, the output is a csv file.</
|
||||||
|
|
||||||
</div>
|
</div>
|
||||||
<a class="headerlink" href="#load_df"></a>
|
<a class="headerlink" href="#load_df"></a>
|
||||||
<div class="pdoc-code codehilite"><pre><span></span><span id="load_df-93"><a href="#load_df-93"><span class="linenos"> 93</span></a><span class="k">def</span> <span class="nf">load_df</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
<div class="pdoc-code codehilite"><pre><span></span><span id="load_df-101"><a href="#load_df-101"><span class="linenos">101</span></a><span class="k">def</span> <span class="nf">load_df</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
|
||||||
</span><span id="load_df-94"><a href="#load_df-94"><span class="linenos"> 94</span></a><span class="w"> </span><span class="sd">"""Imports a pandas DataFrame from a csv.(gz) file in which Obs objects are serialized as json strings.</span>
|
</span><span id="load_df-102"><a href="#load_df-102"><span class="linenos">102</span></a><span class="w"> </span><span class="sd">"""Imports a pandas DataFrame from a csv.(gz) file in which Obs objects are serialized as json strings.</span>
|
||||||
</span><span id="load_df-95"><a href="#load_df-95"><span class="linenos"> 95</span></a>
|
</span><span id="load_df-103"><a href="#load_df-103"><span class="linenos">103</span></a>
|
||||||
</span><span id="load_df-96"><a href="#load_df-96"><span class="linenos"> 96</span></a><span class="sd"> Parameters</span>
|
</span><span id="load_df-104"><a href="#load_df-104"><span class="linenos">104</span></a><span class="sd"> Parameters</span>
|
||||||
</span><span id="load_df-97"><a href="#load_df-97"><span class="linenos"> 97</span></a><span class="sd"> ----------</span>
|
</span><span id="load_df-105"><a href="#load_df-105"><span class="linenos">105</span></a><span class="sd"> ----------</span>
|
||||||
</span><span id="load_df-98"><a href="#load_df-98"><span class="linenos"> 98</span></a><span class="sd"> fname : str</span>
|
</span><span id="load_df-106"><a href="#load_df-106"><span class="linenos">106</span></a><span class="sd"> fname : str</span>
|
||||||
</span><span id="load_df-99"><a href="#load_df-99"><span class="linenos"> 99</span></a><span class="sd"> Filename of the input file.</span>
|
</span><span id="load_df-107"><a href="#load_df-107"><span class="linenos">107</span></a><span class="sd"> Filename of the input file.</span>
|
||||||
</span><span id="load_df-100"><a href="#load_df-100"><span class="linenos">100</span></a><span class="sd"> auto_gamma : bool</span>
|
</span><span id="load_df-108"><a href="#load_df-108"><span class="linenos">108</span></a><span class="sd"> auto_gamma : bool</span>
|
||||||
</span><span id="load_df-101"><a href="#load_df-101"><span class="linenos">101</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
</span><span id="load_df-109"><a href="#load_df-109"><span class="linenos">109</span></a><span class="sd"> If True applies the gamma_method to all imported Obs objects with the default parameters for</span>
|
||||||
</span><span id="load_df-102"><a href="#load_df-102"><span class="linenos">102</span></a><span class="sd"> the error analysis. Default False.</span>
|
</span><span id="load_df-110"><a href="#load_df-110"><span class="linenos">110</span></a><span class="sd"> the error analysis. Default False.</span>
|
||||||
</span><span id="load_df-103"><a href="#load_df-103"><span class="linenos">103</span></a><span class="sd"> gz : bool</span>
|
</span><span id="load_df-111"><a href="#load_df-111"><span class="linenos">111</span></a><span class="sd"> gz : bool</span>
|
||||||
</span><span id="load_df-104"><a href="#load_df-104"><span class="linenos">104</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
</span><span id="load_df-112"><a href="#load_df-112"><span class="linenos">112</span></a><span class="sd"> If True, assumes that data is gzipped. If False, assumes JSON file.</span>
|
||||||
</span><span id="load_df-105"><a href="#load_df-105"><span class="linenos">105</span></a>
|
|
||||||
</span><span id="load_df-106"><a href="#load_df-106"><span class="linenos">106</span></a><span class="sd"> Returns</span>
|
|
||||||
</span><span id="load_df-107"><a href="#load_df-107"><span class="linenos">107</span></a><span class="sd"> -------</span>
|
|
||||||
</span><span id="load_df-108"><a href="#load_df-108"><span class="linenos">108</span></a><span class="sd"> data : pandas.DataFrame</span>
|
|
||||||
</span><span id="load_df-109"><a href="#load_df-109"><span class="linenos">109</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
|
||||||
</span><span id="load_df-110"><a href="#load_df-110"><span class="linenos">110</span></a><span class="sd"> """</span>
|
|
||||||
</span><span id="load_df-111"><a href="#load_df-111"><span class="linenos">111</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
|
||||||
</span><span id="load_df-112"><a href="#load_df-112"><span class="linenos">112</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
|
||||||
</span><span id="load_df-113"><a href="#load_df-113"><span class="linenos">113</span></a>
|
</span><span id="load_df-113"><a href="#load_df-113"><span class="linenos">113</span></a>
|
||||||
</span><span id="load_df-114"><a href="#load_df-114"><span class="linenos">114</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
</span><span id="load_df-114"><a href="#load_df-114"><span class="linenos">114</span></a><span class="sd"> Returns</span>
|
||||||
</span><span id="load_df-115"><a href="#load_df-115"><span class="linenos">115</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="load_df-115"><a href="#load_df-115"><span class="linenos">115</span></a><span class="sd"> -------</span>
|
||||||
</span><span id="load_df-116"><a href="#load_df-116"><span class="linenos">116</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
</span><span id="load_df-116"><a href="#load_df-116"><span class="linenos">116</span></a><span class="sd"> data : pandas.DataFrame</span>
|
||||||
</span><span id="load_df-117"><a href="#load_df-117"><span class="linenos">117</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
|
</span><span id="load_df-117"><a href="#load_df-117"><span class="linenos">117</span></a><span class="sd"> Dataframe with the content of the sqlite database.</span>
|
||||||
</span><span id="load_df-118"><a href="#load_df-118"><span class="linenos">118</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
|
</span><span id="load_df-118"><a href="#load_df-118"><span class="linenos">118</span></a><span class="sd"> """</span>
|
||||||
</span><span id="load_df-119"><a href="#load_df-119"><span class="linenos">119</span></a> <span class="k">else</span><span class="p">:</span>
|
</span><span id="load_df-119"><a href="#load_df-119"><span class="linenos">119</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.csv'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="load_df-120"><a href="#load_df-120"><span class="linenos">120</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
</span><span id="load_df-120"><a href="#load_df-120"><span class="linenos">120</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.csv'</span>
|
||||||
</span><span id="load_df-121"><a href="#load_df-121"><span class="linenos">121</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
</span><span id="load_df-121"><a href="#load_df-121"><span class="linenos">121</span></a>
|
||||||
</span><span id="load_df-122"><a href="#load_df-122"><span class="linenos">122</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span>
|
</span><span id="load_df-122"><a href="#load_df-122"><span class="linenos">122</span></a> <span class="k">if</span> <span class="n">gz</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||||
</span><span id="load_df-123"><a href="#load_df-123"><span class="linenos">123</span></a>
|
</span><span id="load_df-123"><a href="#load_df-123"><span class="linenos">123</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
</span><span id="load_df-124"><a href="#load_df-124"><span class="linenos">124</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">re_import</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
</span><span id="load_df-124"><a href="#load_df-124"><span class="linenos">124</span></a> <span class="n">fname</span> <span class="o">+=</span> <span class="s1">'.gz'</span>
|
||||||
|
</span><span id="load_df-125"><a href="#load_df-125"><span class="linenos">125</span></a> <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
|
||||||
|
</span><span id="load_df-126"><a href="#load_df-126"><span class="linenos">126</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">keep_default_na</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
|
</span><span id="load_df-127"><a href="#load_df-127"><span class="linenos">127</span></a> <span class="k">else</span><span class="p">:</span>
|
||||||
|
</span><span id="load_df-128"><a href="#load_df-128"><span class="linenos">128</span></a> <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">'.gz'</span><span class="p">):</span>
|
||||||
|
</span><span id="load_df-129"><a href="#load_df-129"><span class="linenos">129</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!"</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
|
||||||
|
</span><span id="load_df-130"><a href="#load_df-130"><span class="linenos">130</span></a> <span class="n">re_import</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">read_csv</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">keep_default_na</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
|
||||||
|
</span><span id="load_df-131"><a href="#load_df-131"><span class="linenos">131</span></a>
|
||||||
|
</span><span id="load_df-132"><a href="#load_df-132"><span class="linenos">132</span></a> <span class="k">return</span> <span class="n">_deserialize_df</span><span class="p">(</span><span class="n">re_import</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="n">auto_gamma</span><span class="p">)</span>
|
||||||
</span></pre></div>
|
</span></pre></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue