mirror of
https://github.com/fjosw/pyerrors.git
synced 2025-03-15 14:50:25 +01:00
small change in read parameters, made tests available for auto-testing
This commit is contained in:
jkuhl-uni
parent
5062f030c4
commit
a33d6897f0
2 changed files with 39 additions and 46 deletions
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@ -9,8 +9,7 @@ from ..obs import Obs
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from . import utils
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def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
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version="1.0c", **kwargs):
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def read_sfcf(path, prefix, name, quarks='.*', corr_type = 'bi', noffset=0, wf=0, wf2=0, version="1.0c", **kwargs):
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"""Read sfcf c format from given folder structure.
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Parameters
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@ -30,13 +29,10 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
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im: bool
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if True, read imaginary instead of real part
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of the correlation function.
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b2b: bool
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if True, read a time-dependent boundary-to-boundary
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correlation function
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single: bool
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if True, read time independent boundary to boundary
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correlation function
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names: list
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corr_type : str
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change between bi (boundary - inner) (default) bib (boundary - inner - boundary) and bb (boundary - boundary)
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correlator types
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names : list
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Alternative labeling for replicas/ensembles.
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Has to have the appropriate length
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ens_name : str
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@ -55,8 +51,6 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
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check_configs:
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list of list of supposed configs, eg. [range(1,1000)]
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for one replicum with 1000 configs
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TODO:
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- whats going on with files here?
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"""
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if kwargs.get('im'):
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im = 1
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@ -64,19 +58,19 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
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else:
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im = 0
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part = 'real'
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if kwargs.get('single'):
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b2b = 1
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single = 1
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else:
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if kwargs.get('b2b'):
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b2b = 1
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else:
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b2b = 0
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single = 0
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if "replica" in kwargs:
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reps = kwargs.get("replica")
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if corr_type == 'bb':
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b2b = True
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single = True
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elif corr_type == 'bib':
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b2b = True
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single = False
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else:
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b2b = False
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single = False
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# due to higher usage in current projects,
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# compact file format is default
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compact = True
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@ -7,43 +7,42 @@ import pyerrors as pe
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import pyerrors.input.openQCD as qcdin
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import pyerrors.input.sfcf as sfin
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import shutil
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import pytest
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from time import sleep
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def build_test_environment(type, cfgs, reps):
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if type == "o":
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def build_test_environment(env_type, cfgs, reps):
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if env_type == "o":
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for i in range(2,cfgs+1):
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shutil.copytree("data/sfcf_test/data_o/test_r0/cfg1","data/sfcf_test/data_o/test_r0/cfg"+str(i))
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shutil.copytree("tests/data/sfcf_test/data_o/test_r0/cfg1","tests/data/sfcf_test/data_o/test_r0/cfg"+str(i))
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for i in range(1,reps):
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shutil.copytree("data/sfcf_test/data_o/test_r0", "data/sfcf_test/data_o/test_r"+str(i))
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elif type == "c":
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shutil.copytree("tests/data/sfcf_test/data_o/test_r0", "tests/data/sfcf_test/data_o/test_r"+str(i))
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elif env_type == "c":
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for i in range(2,cfgs+1):
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shutil.copy("data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
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shutil.copy("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
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for i in range(1,reps):
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os.mkdir("data/sfcf_test/data_c/data_c_r"+str(i))
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os.mkdir("tests/data/sfcf_test/data_c/data_c_r"+str(i))
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for j in range(1,cfgs+1):
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shutil.copy("data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","data/sfcf_test/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
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shutil.copy("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","tests/data/sfcf_test/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
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def clean_test_environment(type, cfgs, reps):
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if type == "o":
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def clean_test_environment(env_type, cfgs, reps):
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if env_type == "o":
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for i in range(1,reps):
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shutil.rmtree("data/sfcf_test/data_o/test_r"+str(i))
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shutil.rmtree("tests/data/sfcf_test/data_o/test_r"+str(i))
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for i in range(2,cfgs+1):
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shutil.rmtree("data/sfcf_test/data_o/test_r0/cfg"+str(i))
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elif type == "c":
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shutil.rmtree("tests/data/sfcf_test/data_o/test_r0/cfg"+str(i))
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elif env_type == "c":
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for i in range(1,reps):
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shutil.rmtree("data/sfcf_test/data_c/data_c_r"+str(i))
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shutil.rmtree("tests/data/sfcf_test/data_c/data_c_r"+str(i))
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for i in range(2,cfgs+1):
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os.remove("data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
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os.remove("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
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def test_o_bb():
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build_test_environment("o",5,3)
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f_1 = sfin.read_sfcf("data/sfcf_test/data_o", "test", "f_1",quarks="lquark lquark", wf = 0, wf2=0, version = "2.0", single = True)
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f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "f_1",quarks="lquark lquark", wf = 0, wf2=0, version = "2.0", single = True)
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print(f_1)
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clean_test_environment("o",5,3)
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assert len(f_1) == 1
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@ -51,7 +50,7 @@ def test_o_bb():
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def test_o_bi():
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build_test_environment("o",5,3)
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f_A = sfin.read_sfcf("data/sfcf_test/data_o", "test", "f_A",quarks="lquark lquark", wf = 0, version = "2.0")
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f_A = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "f_A",quarks="lquark lquark", wf = 0, version = "2.0")
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print(f_A)
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clean_test_environment("o",5,3)
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assert len(f_A) == 3
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@ -61,7 +60,7 @@ def test_o_bi():
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def test_o_bib():
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build_test_environment("o",5,3)
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f_V0 = sfin.read_sfcf("data/sfcf_test/data_o", "test", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0", b2b = True)
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f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0", b2b = True)
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print(f_V0)
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clean_test_environment("o",5,3)
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assert len(f_V0) == 3
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@ -71,7 +70,7 @@ def test_o_bib():
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def test_c_bb():
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build_test_environment("c",5,3)
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f_1 = sfin.read_sfcf("data/sfcf_test/data_c", "data_c", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0c", single = True)
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f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0c", single = True)
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print(f_1)
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clean_test_environment("c",5,3)
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assert len(f_1) == 1
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@ -79,7 +78,7 @@ def test_c_bb():
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def test_c_bi():
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build_test_environment("c",5,3)
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f_A = sfin.read_sfcf("data/sfcf_test/data_c", "data_c", "f_A", quarks="lquark lquark", wf = 0, version = "2.0c")
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f_A = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "f_A", quarks="lquark lquark", wf = 0, version = "2.0c")
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print(f_A)
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clean_test_environment("c",5,3)
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assert len(f_A) == 3
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@ -89,7 +88,7 @@ def test_c_bi():
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def test_c_bib():
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build_test_environment("c",5,3)
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f_V0 = sfin.read_sfcf("data/sfcf_test/data_c", "data_c", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0c", b2b = True)
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f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0c", b2b = True)
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print(f_V0)
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clean_test_environment("c",5,3)
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assert len(f_V0) == 3
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@ -99,7 +98,7 @@ def test_c_bib():
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def test_a_bb():
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build_test_environment("a",5,3)
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f_1 = sfin.read_sfcf("data/sfcf_test/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", single = True)
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f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", single = True)
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print(f_1)
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clean_test_environment("a",5,3)
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assert len(f_1) == 1
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@ -107,7 +106,7 @@ def test_a_bb():
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def test_a_bi():
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build_test_environment("a",5,3)
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f_A = sfin.read_sfcf("data/sfcf_test/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
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f_A = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
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print(f_A)
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clean_test_environment("a",5,3)
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assert len(f_A) == 3
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@ -117,7 +116,7 @@ def test_a_bi():
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def test_a_bib():
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build_test_environment("a",5,3)
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f_V0 = sfin.read_sfcf("data/sfcf_test/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", b2b = True)
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f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", b2b = True)
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print(f_V0)
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clean_test_environment("a",5,3)
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assert len(f_V0) == 3
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