diff --git a/docs/pyerrors.html b/docs/pyerrors.html
index f0df0a83..077335c2 100644
--- a/docs/pyerrors.html
+++ b/docs/pyerrors.html
@@ -3,14 +3,14 @@
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@@ -70,22 +70,22 @@
 
         <h2>Submodules</h2>
         <ul>
-                <li><a href="pyerrors/correlators.html">pyerrors.correlators</a></li>
-                <li><a href="pyerrors/covobs.html">pyerrors.covobs</a></li>
-                <li><a href="pyerrors/dirac.html">pyerrors.dirac</a></li>
-                <li><a href="pyerrors/fits.html">pyerrors.fits</a></li>
-                <li><a href="pyerrors/input.html">pyerrors.input</a></li>
-                <li><a href="pyerrors/linalg.html">pyerrors.linalg</a></li>
-                <li><a href="pyerrors/misc.html">pyerrors.misc</a></li>
-                <li><a href="pyerrors/mpm.html">pyerrors.mpm</a></li>
-                <li><a href="pyerrors/obs.html">pyerrors.obs</a></li>
-                <li><a href="pyerrors/roots.html">pyerrors.roots</a></li>
-                <li><a href="pyerrors/version.html">pyerrors.version</a></li>
+                <li><a href="pyerrors/correlators.html">correlators</a></li>
+                <li><a href="pyerrors/covobs.html">covobs</a></li>
+                <li><a href="pyerrors/dirac.html">dirac</a></li>
+                <li><a href="pyerrors/fits.html">fits</a></li>
+                <li><a href="pyerrors/input.html">input</a></li>
+                <li><a href="pyerrors/linalg.html">linalg</a></li>
+                <li><a href="pyerrors/misc.html">misc</a></li>
+                <li><a href="pyerrors/mpm.html">mpm</a></li>
+                <li><a href="pyerrors/obs.html">obs</a></li>
+                <li><a href="pyerrors/roots.html">roots</a></li>
+                <li><a href="pyerrors/version.html">version</a></li>
         </ul>
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
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@@ -573,466 +573,466 @@ The following entries are optional:</li>
 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="sa">r</span><span class="sd">&#39;&#39;&#39;</span>
-<span class="sd"># What is pyerrors?</span>
-<span class="sd">`pyerrors` is a python package for error computation and propagation of Markov chain Monte Carlo data.</span>
-<span class="sd">It is based on the gamma method [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017). Some of its features are:</span>
-<span class="sd">- automatic differentiation for exact liner error propagation as suggested in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289) (partly based on the [autograd](https://github.com/HIPS/autograd) package).</span>
-<span class="sd">- treatment of slow modes in the simulation as suggested in [arXiv:1009.5228](https://arxiv.org/abs/1009.5228).</span>
-<span class="sd">- coherent error propagation for data from different Markov chains.</span>
-<span class="sd">- non-linear fits with x- and y-errors and exact linear error propagation based on automatic differentiation as introduced in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289).</span>
-<span class="sd">- real and complex matrix operations and their error propagation based on automatic differentiation (Matrix inverse, Cholesky decomposition, calculation of eigenvalues and eigenvectors, singular value decomposition...).</span>
-
-<span class="sd">There exist similar publicly available implementations of gamma method error analysis suites in [Fortran](https://gitlab.ift.uam-csic.es/alberto/aderrors), [Julia](https://gitlab.ift.uam-csic.es/alberto/aderrors.jl) and [Python](https://github.com/mbruno46/pyobs).</span>
-
-<span class="sd">## Basic example</span>
-
-<span class="sd">```python</span>
-<span class="sd">import numpy as np</span>
-<span class="sd">import pyerrors as pe</span>
-
-<span class="sd">my_obs = pe.Obs([samples], [&#39;ensemble_name&#39;]) # Initialize an Obs object</span>
-<span class="sd">my_new_obs = 2 * np.log(my_obs) / my_obs ** 2 # Construct derived Obs object</span>
-<span class="sd">my_new_obs.gamma_method()                     # Estimate the statistical error</span>
-<span class="sd">print(my_new_obs)                             # Print the result to stdout</span>
-<span class="sd">&gt; 0.31498(72)</span>
-<span class="sd">```</span>
-
-<span class="sd"># The `Obs` class</span>
-
-<span class="sd">`pyerrors` introduces a new datatype, `Obs`, which simplifies error propagation and estimation for auto- and cross-correlated data.</span>
-<span class="sd">An `Obs` object can be initialized with two arguments, the first is a list containing the samples for an observable from a Monte Carlo chain.</span>
-<span class="sd">The samples can either be provided as python list or as numpy array.</span>
-<span class="sd">The second argument is a list containing the names of the respective Monte Carlo chains as strings. These strings uniquely identify a Monte Carlo chain/ensemble.</span>
-
-<span class="sd">```python</span>
-<span class="sd">import pyerrors as pe</span>
-
-<span class="sd">my_obs = pe.Obs([samples], [&#39;ensemble_name&#39;])</span>
-<span class="sd">```</span>
-
-<span class="sd">## Error propagation</span>
-
-<span class="sd">When performing mathematical operations on `Obs` objects the correct error propagation is intrinsically taken care of using a first order Taylor expansion</span>
-<span class="sd">$$\delta_f^i=\sum_\alpha \bar{f}_\alpha \delta_\alpha^i\,,\quad \delta_\alpha^i=a_\alpha^i-\bar{a}_\alpha\,,$$</span>
-<span class="sd">as introduced in [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017).</span>
-<span class="sd">The required derivatives $\bar{f}_\alpha$ are evaluated up to machine precision via automatic differentiation as suggested in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289).</span>
-
-<span class="sd">The `Obs` class is designed such that mathematical numpy functions can be used on `Obs` just as for regular floats.</span>
-
-<span class="sd">```python</span>
-<span class="sd">import numpy as np</span>
-<span class="sd">import pyerrors as pe</span>
-
-<span class="sd">my_obs1 = pe.Obs([samples1], [&#39;ensemble_name&#39;])</span>
-<span class="sd">my_obs2 = pe.Obs([samples2], [&#39;ensemble_name&#39;])</span>
-
-<span class="sd">my_sum = my_obs1 + my_obs2</span>
-
-<span class="sd">my_m_eff = np.log(my_obs1 / my_obs2)</span>
-
-<span class="sd">iamzero = my_m_eff - my_m_eff</span>
-<span class="sd"># Check that value and fluctuations are zero within machine precision</span>
-<span class="sd">print(iamzero == 0.0)</span>
-<span class="sd">&gt; True</span>
-<span class="sd">```</span>
-
-<span class="sd">## Error estimation</span>
-
-<span class="sd">The error estimation within `pyerrors` is based on the gamma method introduced in [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017).</span>
-<span class="sd">After having arrived at the derived quantity of interest the `gamma_method` can be called as detailed in the following example.</span>
-
-<span class="sd">```python</span>
-<span class="sd">my_sum.gamma_method()</span>
-<span class="sd">print(my_sum)</span>
-<span class="sd">&gt; 1.70(57)</span>
-<span class="sd">my_sum.details()</span>
-<span class="sd">&gt; Result	 1.70000000e+00 +/- 5.72046658e-01 +/- 7.56746598e-02 (33.650%)</span>
-<span class="sd">&gt;  t_int	 2.71422900e+00 +/- 6.40320983e-01 S = 2.00</span>
-<span class="sd">&gt; 1000 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble_name&#39; : 1000 configurations (from 1 to 1000)</span>
-
-<span class="sd">```</span>
-
-<span class="sd">We use the following definition of the integrated autocorrelation time established in [Madras &amp; Sokal 1988](https://link.springer.com/article/10.1007/BF01022990)</span>
-<span class="sd">$$\tau_\mathrm{int}=\frac{1}{2}+\sum_{t=1}^{W}\rho(t)\geq \frac{1}{2}\,.$$</span>
-<span class="sd">The window $W$ is determined via the automatic windowing procedure described in [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017).</span>
-<span class="sd">The standard value for the parameter $S$ of this automatic windowing procedure is $S=2$. Other values for $S$ can be passed to the `gamma_method` as parameter.</span>
-
-<span class="sd">```python</span>
-<span class="sd">my_sum.gamma_method(S=3.0)</span>
-<span class="sd">my_sum.details()</span>
-<span class="sd">&gt; Result	 1.70000000e+00 +/- 6.30675201e-01 +/- 1.04585650e-01 (37.099%)</span>
-<span class="sd">&gt;  t_int	 3.29909703e+00 +/- 9.77310102e-01 S = 3.00</span>
-<span class="sd">&gt; 1000 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble_name&#39; : 1000 configurations (from 1 to 1000)</span>
-
-<span class="sd">```</span>
-
-<span class="sd">The integrated autocorrelation time $\tau_\mathrm{int}$ and the autocorrelation function $\rho(W)$ can be monitored via the methods `pyerrors.obs.Obs.plot_tauint` and `pyerrors.obs.Obs.plot_tauint`.</span>
-
-<span class="sd">If the parameter $S$ is set to zero it is assumed that the dataset does not exhibit any autocorrelation and the windowsize is chosen to be zero.</span>
-<span class="sd">In this case the error estimate is identical to the sample standard error.</span>
-
-<span class="sd">### Exponential tails</span>
-
-<span class="sd">Slow modes in the Monte Carlo history can be accounted for by attaching an exponential tail to the autocorrelation function $\rho$ as suggested in [arXiv:1009.5228](https://arxiv.org/abs/1009.5228). The longest autocorrelation time in the history, $\tau_\mathrm{exp}$, can be passed to the `gamma_method` as parameter. In this case the automatic windowing procedure is vacated and the parameter $S$ does not affect the error estimate.</span>
-
-<span class="sd">```python</span>
-<span class="sd">my_sum.gamma_method(tau_exp=7.2)</span>
-<span class="sd">my_sum.details()</span>
-<span class="sd">&gt; Result	 1.70000000e+00 +/- 6.28097762e-01 +/- 5.79077524e-02 (36.947%)</span>
-<span class="sd">&gt;  t_int	 3.27218667e+00 +/- 7.99583654e-01 tau_exp = 7.20,  N_sigma = 1</span>
-<span class="sd">&gt; 1000 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble_name&#39; : 1000 configurations (from 1 to 1000)</span>
-<span class="sd">```</span>
-
-<span class="sd">For the full API see `pyerrors.obs.Obs.gamma_method`.</span>
-
-<span class="sd">## Multiple ensembles/replica</span>
-
-<span class="sd">Error propagation for multiple ensembles (Markov chains with different simulation parameters) is handled automatically. Ensembles are uniquely identified by their `name`.</span>
-
-<span class="sd">```python</span>
-<span class="sd">obs1 = pe.Obs([samples1], [&#39;ensemble1&#39;])</span>
-<span class="sd">obs2 = pe.Obs([samples2], [&#39;ensemble2&#39;])</span>
-
-<span class="sd">my_sum = obs1 + obs2</span>
-<span class="sd">my_sum.details()</span>
-<span class="sd">&gt; Result   2.00697958e+00</span>
-<span class="sd">&gt; 1500 samples in 2 ensembles:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 1000 configurations (from 1 to 1000)</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble2&#39; : 500 configurations (from 1 to 500)</span>
-<span class="sd">```</span>
-
-<span class="sd">`pyerrors` identifies multiple replica (independent Markov chains with identical simulation parameters) by the vertical bar `|` in the name of the data set.</span>
-
-<span class="sd">```python</span>
-<span class="sd">obs1 = pe.Obs([samples1], [&#39;ensemble1|r01&#39;])</span>
-<span class="sd">obs2 = pe.Obs([samples2], [&#39;ensemble1|r02&#39;])</span>
-
-<span class="sd">&gt; my_sum = obs1 + obs2</span>
-<span class="sd">&gt; my_sum.details()</span>
-<span class="sd">&gt; Result   2.00697958e+00</span>
-<span class="sd">&gt; 1500 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble1&#39;</span>
-<span class="sd">&gt;     · Replicum &#39;r01&#39; : 1000 configurations (from 1 to 1000)</span>
-<span class="sd">&gt;     · Replicum &#39;r02&#39; : 500 configurations (from 1 to 500)</span>
-<span class="sd">```</span>
-
-<span class="sd">### Error estimation for multiple ensembles</span>
-
-<span class="sd">In order to keep track of different error analysis parameters for different ensembles one can make use of global dictionaries as detailed in the following example.</span>
-
-<span class="sd">```python</span>
-<span class="sd">pe.Obs.S_dict[&#39;ensemble1&#39;] = 2.5</span>
-<span class="sd">pe.Obs.tau_exp_dict[&#39;ensemble2&#39;] = 8.0</span>
-<span class="sd">pe.Obs.tau_exp_dict[&#39;ensemble3&#39;] = 2.0</span>
-<span class="sd">```</span>
-
-<span class="sd">In case the `gamma_method` is called without any parameters it will use the values specified in the dictionaries for the respective ensembles.</span>
-<span class="sd">Passing arguments to the `gamma_method` still dominates over the dictionaries.</span>
-
-
-<span class="sd">## Irregular Monte Carlo chains</span>
-
-<span class="sd">`Obs` objects defined on irregular Monte Carlo chains can be initialized with the parameter `idl`.</span>
-
-<span class="sd">```python</span>
-<span class="sd"># Observable defined on configurations 20 to 519</span>
-<span class="sd">obs1 = pe.Obs([samples1], [&#39;ensemble1&#39;], idl=[range(20, 520)])</span>
-<span class="sd">obs1.details()</span>
-<span class="sd">&gt; Result	 9.98319881e-01</span>
-<span class="sd">&gt; 500 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 500 configurations (from 20 to 519)</span>
-
-<span class="sd"># Observable defined on every second configuration between 5 and 1003</span>
-<span class="sd">obs2 = pe.Obs([samples2], [&#39;ensemble1&#39;], idl=[range(5, 1005, 2)])</span>
-<span class="sd">obs2.details()</span>
-<span class="sd">&gt; Result	 9.99100712e-01</span>
-<span class="sd">&gt; 500 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 500 configurations (from 5 to 1003 in steps of 2)</span>
-
-<span class="sd"># Observable defined on configurations 2, 9, 28, 29 and 501</span>
-<span class="sd">obs3 = pe.Obs([samples3], [&#39;ensemble1&#39;], idl=[[2, 9, 28, 29, 501]])</span>
-<span class="sd">obs3.details()</span>
-<span class="sd">&gt; Result	 1.01718064e+00</span>
-<span class="sd">&gt; 5 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 5 configurations (irregular range)</span>
-
-<span class="sd">```</span>
-
-<span class="sd">`Obs` objects defined on regular and irregular histories of the same ensemble can be combined with each other and the correct error propagation and estimation is automatically taken care of.</span>
-
-<span class="sd">**Warning:** Irregular Monte Carlo chains can result in odd patterns in the autocorrelation functions.</span>
-<span class="sd">Make sure to check the autocorrelation time with e.g. `pyerrors.obs.Obs.plot_rho` or `pyerrors.obs.Obs.plot_tauint`.</span>
-
-<span class="sd">For the full API see `pyerrors.obs.Obs`.</span>
-
-<span class="sd"># Correlators</span>
-<span class="sd">When one is not interested in single observables but correlation functions, `pyerrors` offers the `Corr` class which simplifies the corresponding error propagation and provides the user with a set of standard methods. In order to initialize a `Corr` objects one needs to arrange the data as a list of `Obs`</span>
-<span class="sd">```python</span>
-<span class="sd">my_corr = pe.Corr([obs_0, obs_1, obs_2, obs_3])</span>
-<span class="sd">print(my_corr)</span>
-<span class="sd">&gt; x0/a	Corr(x0/a)</span>
-<span class="sd">&gt; ------------------</span>
-<span class="sd">&gt; 0	 0.7957(80)</span>
-<span class="sd">&gt; 1	 0.5156(51)</span>
-<span class="sd">&gt; 2	 0.3227(33)</span>
-<span class="sd">&gt; 3	 0.2041(21)</span>
-<span class="sd">```</span>
-<span class="sd">In case the correlation functions are not defined on the outermost timeslices, for example because of fixed boundary conditions, a padding can be introduced.</span>
-<span class="sd">```python</span>
-<span class="sd">my_corr = pe.Corr([obs_0, obs_1, obs_2, obs_3], padding=[1, 1])</span>
-<span class="sd">print(my_corr)</span>
-<span class="sd">&gt; x0/a	Corr(x0/a)</span>
-<span class="sd">&gt; ------------------</span>
-<span class="sd">&gt; 0</span>
-<span class="sd">&gt; 1	 0.7957(80)</span>
-<span class="sd">&gt; 2	 0.5156(51)</span>
-<span class="sd">&gt; 3	 0.3227(33)</span>
-<span class="sd">&gt; 4	 0.2041(21)</span>
-<span class="sd">&gt; 5</span>
-<span class="sd">```</span>
-<span class="sd">The individual entries of a correlator can be accessed via slicing</span>
-<span class="sd">```python</span>
-<span class="sd">print(my_corr[3])</span>
-<span class="sd">&gt; 0.3227(33)</span>
-<span class="sd">```</span>
-<span class="sd">Error propagation with the `Corr` class works very similar to `Obs` objects. Mathematical operations are overloaded and `Corr` objects can be computed together with other `Corr` objects, `Obs` objects or real numbers and integers.</span>
-<span class="sd">```python</span>
-<span class="sd">my_new_corr = 0.3 * my_corr[2] * my_corr * my_corr + 12 / my_corr</span>
-<span class="sd">```</span>
-
-<span class="sd">`pyerrors` provides the user with a set of regularly used methods for the manipulation of correlator objects:</span>
-<span class="sd">- `Corr.gamma_method` applies the gamma method to all entries of the correlator.</span>
-<span class="sd">- `Corr.m_eff` to construct effective masses. Various variants for periodic and fixed temporal boundary conditions are available.</span>
-<span class="sd">- `Corr.deriv` returns the first derivative of the correlator as `Corr`. Different discretizations of the numerical derivative are available.</span>
-<span class="sd">- `Corr.second_deriv` returns the second derivative of the correlator as `Corr`. Different discretizations of the numerical derivative are available.</span>
-<span class="sd">- `Corr.symmetric` symmetrizes parity even correlations functions, assuming periodic boundary conditions.</span>
-<span class="sd">- `Corr.anti_symmetric` anti-symmetrizes parity odd correlations functions, assuming periodic boundary conditions.</span>
-<span class="sd">- `Corr.T_symmetry` averages a correlator with its time symmetry partner, assuming fixed boundary conditions.</span>
-<span class="sd">- `Corr.plateau` extracts a plateau value from the correlator in a given range.</span>
-<span class="sd">- `Corr.roll` periodically shifts the correlator.</span>
-<span class="sd">- `Corr.reverse` reverses the time ordering of the correlator.</span>
-<span class="sd">- `Corr.correlate` constructs a disconnected correlation function from the correlator and another `Corr` or `Obs` object.</span>
-<span class="sd">- `Corr.reweight` reweights the correlator.</span>
-
-<span class="sd">`pyerrors` can also handle matrices of correlation functions and extract energy states from these matrices via a generalized eigenvalue problem (see `pyerrors.correlators.Corr.GEVP`).</span>
-
-<span class="sd">For the full API see `pyerrors.correlators.Corr`.</span>
-
-<span class="sd"># Complex valued observables</span>
-
-<span class="sd">`pyerrors` can handle complex valued observables via the class `pyerrors.obs.CObs`.</span>
-<span class="sd">`CObs` are initialized with a real and an imaginary part which both can be `Obs` valued.</span>
-
-<span class="sd">```python</span>
-<span class="sd">my_real_part = pe.Obs([samples1], [&#39;ensemble1&#39;])</span>
-<span class="sd">my_imag_part = pe.Obs([samples2], [&#39;ensemble1&#39;])</span>
-
-<span class="sd">my_cobs = pe.CObs(my_real_part, my_imag_part)</span>
-<span class="sd">my_cobs.gamma_method()</span>
-<span class="sd">print(my_cobs)</span>
-<span class="sd">&gt; (0.9959(91)+0.659(28)j)</span>
-<span class="sd">```</span>
-
-<span class="sd">Elementary mathematical operations are overloaded and samples are properly propagated as for the `Obs` class.</span>
-<span class="sd">```python</span>
-<span class="sd">my_derived_cobs = (my_cobs + my_cobs.conjugate()) / np.abs(my_cobs)</span>
-<span class="sd">my_derived_cobs.gamma_method()</span>
-<span class="sd">print(my_derived_cobs)</span>
-<span class="sd">&gt; (1.668(23)+0.0j)</span>
-<span class="sd">```</span>
-
-<span class="sd"># The `Covobs` class</span>
-<span class="sd">In many projects, auxiliary data that is not based on Monte Carlo chains enters. Examples are experimentally determined mesons masses which are used to set the scale or renormalization constants. These numbers come with an error that has to be propagated through the analysis. The `Covobs` class allows to define such quantities in `pyerrors`. Furthermore, external input might consist of correlated quantities. An example are the parameters of an interpolation formula, which are defined via mean values and a covariance matrix between all parameters. The contribution of the interpolation formula to the error of a derived quantity therefore might depend on the complete covariance matrix.</span>
-
-<span class="sd">This concept is built into the definition of `Covobs`. In `pyerrors`, external input is defined by $M$ mean values, a $M\times M$ covariance matrix, where $M=1$ is permissible, and a name that uniquely identifies the covariance matrix. Below, we define the pion mass, based on its mean value and error, 134.9768(5). Note, that the square of the error enters `cov_Obs`, since the second argument of this function is the covariance matrix of the `Covobs`.</span>
-
-<span class="sd">```python</span>
-<span class="sd">import pyerrors.obs as pe</span>
-
-<span class="sd">mpi = pe.cov_Obs(134.9768, 0.0005**2, &#39;pi^0 mass&#39;)</span>
-<span class="sd">mpi.gamma_method()</span>
-<span class="sd">mpi.details()</span>
-<span class="sd">&gt; Result	 1.34976800e+02 +/- 5.00000000e-04 +/- 0.00000000e+00 (0.000%)</span>
-<span class="sd">&gt;  pi^0 mass 	 5.00000000e-04</span>
-<span class="sd">&gt; 0 samples in 1 ensemble:</span>
-<span class="sd">&gt;   · Covobs   &#39;pi^0 mass&#39;</span>
-<span class="sd">```</span>
-<span class="sd">The resulting object `mpi` is an `Obs` that contains a `Covobs`. In the following, it may be handled as any other `Obs`. The contribution of the covariance matrix to the error of an `Obs` is determined from the $M \times M$ covariance matrix $\Sigma$ and the gradient of the `Obs` with respect to the external quantities, which is the $1\times M$ Jacobian matrix $J$, via</span>
-<span class="sd">$$s = \sqrt{J^T \Sigma J}\,,$$</span>
-<span class="sd">where the Jacobian is computed for each derived quantity via automatic differentiation.</span>
-
-<span class="sd">Correlated auxiliary data is defined similarly to above, e.g., via</span>
-<span class="sd">```python</span>
-<span class="sd">RAP = pe.cov_Obs([16.7457, -19.0475], [[3.49591, -6.07560], [-6.07560, 10.5834]], &#39;R_AP, 1906.03445, (5.3a)&#39;)</span>
-<span class="sd">print(RAP)</span>
-<span class="sd">&gt; [Obs[16.7(1.9)], Obs[-19.0(3.3)]]</span>
-<span class="sd">```</span>
-<span class="sd">where `RAP` now is a list of two `Obs` that contains the two correlated parameters.</span>
-
-<span class="sd">Since the gradient of a derived observable with respect to an external covariance matrix is propagated through the entire analysis, the `Covobs` class allows to quote the derivative of a result with respect to the external quantities. If these derivatives are published together with the result, small shifts in the definition of external quantities, e.g., the definition of the physical point, can be performed a posteriori based on the published information. This may help to compare results of different groups. The gradient of an `Obs` `o` with respect to a covariance matrix with the identifying string `k` may be accessed via</span>
-<span class="sd">```python</span>
-<span class="sd">o.covobs[k].grad</span>
-<span class="sd">```</span>
-
-<span class="sd"># Error propagation in iterative algorithms</span>
-
-<span class="sd">`pyerrors` supports exact linear error propagation for iterative algorithms like various variants of non-linear least sqaures fits or root finding. The derivatives required for the error propagation are calculated as described in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289).</span>
-
-<span class="sd">## Least squares fits</span>
-
-<span class="sd">Standard non-linear least square fits with errors on the dependent but not the independent variables can be performed with `pyerrors.fits.least_squares`. As default solver the Levenberg-Marquardt algorithm implemented in [scipy](https://docs.scipy.org/doc/scipy/reference/generated/scipy.optimize.least_squares.html) is used.</span>
-
-<span class="sd">Fit functions have to be of the following form</span>
-<span class="sd">```python</span>
-<span class="sd">import autograd.numpy as anp</span>
-
-<span class="sd">def func(a, x):</span>
-<span class="sd">    return a[1] * anp.exp(-a[0] * x)</span>
-<span class="sd">```</span>
-<span class="sd">**It is important that numerical functions refer to `autograd.numpy` instead of `numpy` for the automatic differentiation in iterative algorithms to work properly.**</span>
-
-<span class="sd">Fits can then be performed via</span>
-<span class="sd">```python</span>
-<span class="sd">fit_result = pe.fits.least_squares(x, y, func)</span>
-<span class="sd">print(&quot;\n&quot;, fit_result)</span>
-<span class="sd">&gt; Fit with 2 parameters</span>
-<span class="sd">&gt; Method: Levenberg-Marquardt</span>
-<span class="sd">&gt; `ftol` termination condition is satisfied.</span>
-<span class="sd">&gt; chisquare/d.o.f.: 0.9593035785160936</span>
-
-<span class="sd">&gt;  Goodness of fit:</span>
-<span class="sd">&gt; χ²/d.o.f. = 0.959304</span>
-<span class="sd">&gt; p-value   = 0.5673</span>
-<span class="sd">&gt; Fit parameters:</span>
-<span class="sd">&gt; 0	 0.0548(28)</span>
-<span class="sd">&gt; 1	 1.933(64)</span>
-<span class="sd">```</span>
-<span class="sd">where x is a `list` or `numpy.array` of `floats` and y is a `list` or `numpy.array` of `Obs`.</span>
-
-<span class="sd">Data stored in `Corr` objects can be fitted directly using the `Corr.fit` method.</span>
-<span class="sd">```python</span>
-<span class="sd">my_corr = pe.Corr(y)</span>
-<span class="sd">fit_result = my_corr.fit(func, fitrange=[12, 25])</span>
-<span class="sd">```</span>
-<span class="sd">this can simplify working with absolute fit ranges and takes care of gaps in the data automatically.</span>
-
-<span class="sd">For fit functions with multiple independent variables the fit function can be of the form</span>
-
-<span class="sd">```python</span>
-<span class="sd">def func(a, x):</span>
-<span class="sd">    (x1, x2) = x</span>
-<span class="sd">    return a[0] * x1 ** 2 + a[1] * x2</span>
-<span class="sd">```</span>
-
-<span class="sd">`pyerrors` also supports correlated fits which can be triggered via the parameter `correlated_fit=True`.</span>
-<span class="sd">Details about how the required covariance matrix is estimated can be found in `pyerrors.obs.covariance`.</span>
-
-<span class="sd">Direct visualizations of the performed fits can be triggered via `resplot=True` or `qqplot=True`. For all available options see `pyerrors.fits.least_squares`.</span>
-
-<span class="sd">## Total least squares fits</span>
-<span class="sd">`pyerrors` can also fit data with errors on both the dependent and independent variables using the total least squares method also referred to orthogonal distance regression as implemented in [scipy](https://docs.scipy.org/doc/scipy/reference/odr.html), see `pyerrors.fits.least_squares`. The syntax is identical to the standard least squares case, the only diffrence being that `x` also has to be a `list` or `numpy.array` of `Obs`.</span>
-
-<span class="sd">For the full API see `pyerrors.fits` for fits and `pyerrors.roots` for finding roots of functions.</span>
-
-<span class="sd"># Matrix operations</span>
-<span class="sd">`pyerrors` provides wrappers for `Obs`- and `CObs`-valued matrix operations based on `numpy.linalg`. The supported functions include:</span>
-<span class="sd">- `inv` for the matrix inverse.</span>
-<span class="sd">- `cholseky` for the Cholesky decomposition.</span>
-<span class="sd">- `det` for the matrix determinant.</span>
-<span class="sd">- `eigh` for eigenvalues and eigenvectors of hermitean matrices.</span>
-<span class="sd">- `eig` for eigenvalues of general matrices.</span>
-<span class="sd">- `pinv` for the Moore-Penrose pseudoinverse.</span>
-<span class="sd">- `svd` for the singular-value-decomposition.</span>
-
-<span class="sd">For the full API see `pyerrors.linalg`.</span>
-
-<span class="sd"># Export data</span>
-
-<span class="sd">The preferred exported file format within `pyerrors` is json.gz. Files written to this format are valid JSON files that have been compressed using gzip. The structure of the content is inspired by the dobs format of the ALPHA collaboration. The aim of the format is to facilitate the storage of data in a self-contained way such that, even years after the creation of the file, it is possible to extract all necessary information:</span>
-<span class="sd">- What observables are stored? Possibly: How exactly are they defined.</span>
-<span class="sd">- How does each single ensemble or external quantity contribute to the error of the observable?</span>
-<span class="sd">- Who did write the file when and on which machine?</span>
-
-<span class="sd">This can be achieved by storing all information in one single file. The export routines of `pyerrors` are written such that as much information as possible is written automatically as described in the following example</span>
-<span class="sd">```python</span>
-<span class="sd">my_obs = pe.Obs([samples], [&quot;test_ensemble&quot;])</span>
-<span class="sd">my_obs.tag = &quot;My observable&quot;</span>
-
-<span class="sd">pe.input.json.dump_to_json(my_obs, &quot;test_output_file&quot;, description=&quot;This file contains a test observable&quot;)</span>
-<span class="sd"># For a single observable one can equivalently use the class method dump</span>
-<span class="sd">my_obs.dump(&quot;test_output_file&quot;, description=&quot;This file contains a test observable&quot;)</span>
-
-<span class="sd">check = pe.input.json.load_json(&quot;test_output_file&quot;)</span>
-
-<span class="sd">print(my_obs == check)</span>
-<span class="sd">&gt; True</span>
-<span class="sd">```</span>
-<span class="sd">The format also allows to directly write out the content of `Corr` objects or lists and arrays of `Obs` objects by passing the desired data to `pyerrors.input.json.dump_to_json`.</span>
-
-<span class="sd">## json.gz format specification</span>
-<span class="sd">The first entries of the file provide optional auxiliary information:</span>
-<span class="sd">- `program` is a string that indicates which program was used to write the file.</span>
-<span class="sd">- `version` is a string that specifies the version of the format.</span>
-<span class="sd">- `who` is a string that specifies the user name of the creator of the file.</span>
-<span class="sd">- `date` is a string and contains the creation date of the file.</span>
-<span class="sd">- `host` is a string and contains the hostname of the machine where the file has been written.</span>
-<span class="sd">- `description` contains information on the content of the file. This field is not filled automatically in `pyerrors`. The user is advised to provide as detailed information as possible in this field. Examples are: Input files of measurements or simulations, LaTeX formulae or references to publications to specify how the observables have been computed, details on the analysis strategy, ... This field may be any valid JSON type. Strings, arrays or objects (equivalent to dicts in python) are well suited to provide information.</span>
-
-<span class="sd">The only necessary entry of the file is the field</span>
-<span class="sd">-`obsdata`, an array that contains the actual data.</span>
-
-<span class="sd">Each entry of the array belongs to a single structure of observables. Currently, these structures can be either of `Obs`, `list`, `numpy.ndarray`, `Corr`. All `Obs` inside a structure (with dimension &gt; 0) have to be defined on the same set of configurations. Different structures, that are represented by entries of the array `obsdata`, are treated independently. Each entry of the array `obsdata` has the following required entries:</span>
-<span class="sd">- `type` is a string that specifies the type of the structure. This allows to parse the content to the correct form after reading the file. It is always possible to interpret the content as list of Obs.</span>
-<span class="sd">- `value` is an array that contains the mean values of the Obs inside the structure.</span>
-<span class="sd">The following entries are optional:</span>
-<span class="sd">- `layout` is a string that specifies the layout of multi-dimensional structures. Examples are &quot;2, 2&quot; for a 2x2 dimensional matrix or  &quot;64, 4, 4&quot; for a Corr with $T=64$ and 4x4 matrices on each time slices. &quot;1&quot; denotes a single Obs. Multi-dimensional structures are stored in row-major format (see below).</span>
-<span class="sd">- `tag` is any JSON type. It contains additional information concerning the structure. The `tag` of an `Obs` in `pyerrors` is written here.</span>
-<span class="sd">- `reweighted` is a Bool that may be used to specify, whether the `Obs` in the structure have been reweighted.</span>
-<span class="sd">- `data` is an array that contains the data from MC chains. We will define it below.</span>
-<span class="sd">- `cdata` is an array that contains the data from external quantities with an error (`Covobs` in `pyerrors`). We will define it below.</span>
-
-<span class="sd">The array `data` contains the data from MC chains. Each entry of the array corresponds to one ensemble and contains:</span>
-<span class="sd">- `id`, a string that contains the name of the ensemble</span>
-<span class="sd">- `replica`, an array that contains an entry per replica of the ensemble.</span>
-
-<span class="sd">Each entry of `replica` contains</span>
-<span class="sd">`name`, a string that contains the name of the replica</span>
-<span class="sd">`deltas`, an array that contains the actual data.</span>
-
-<span class="sd">Each entry in `deltas` corresponds to one configuration of the replica and has $1+N$ many entries. The first entry is an integer that specifies the configuration number that, together with ensemble and replica name, may be used to uniquely identify the configuration on which the data has been obtained. The following N entries specify the deltas, i.e., the deviation of the observable from the mean value on this configuration, of each `Obs` inside the structure. Multi-dimensional structures are stored in a row-major format. For primary observables, such as correlation functions, $value + delta_i$ matches the primary data obtained on the configuration.</span>
-
-<span class="sd">The array `cdata` contains information about the contribution of auxiliary observables, represented by `Covobs` in `pyerrors`, to the total error of the observables. Each entry of the array belongs to one auxiliary covariance matrix and contains:</span>
-<span class="sd">- `id`, a string that identifies the covariance matrix</span>
-<span class="sd">- `layout`, a string that defines the dimensions of the $M\times M$ covariance matrix (has to be &quot;M, M&quot; or &quot;1&quot;).</span>
-<span class="sd">- `cov`, an array that contains the $M\times M$ many entries of the covariance matrix, stored in row-major format.</span>
-<span class="sd">- `grad`, an array that contains N entries, one for each `Obs` inside the structure. Each entry itself is an array, that contains the M gradients of the Nth observable  with respect to the quantity that corresponds to the Mth diagonal entry of the covariance matrix.</span>
-
-<span class="sd">A JSON schema that may be used to verify the correctness of a file with respect to the format definition is stored in ./examples/json_schema.json. The schema is a self-descriptive format definition and contains an exemplary file.</span>
-
-<span class="sd">Julia I/O routines for the json.gz format, compatible with [ADerrors.jl](https://gitlab.ift.uam-csic.es/alberto/aderrors.jl), can be found [here](https://github.com/fjosw/ADjson.jl).</span>
-
-<span class="sd"># Citing</span>
-<span class="sd">If you use `pyerrors` for research that leads to a publication please consider citing:</span>
-<span class="sd">- Ulli Wolff, *Monte Carlo errors with less errors*. Comput.Phys.Commun. 156 (2004) 143-153, Comput.Phys.Commun. 176 (2007) 383 (erratum).</span>
-<span class="sd">- Stefan Schaefer, Rainer Sommer, Francesco Virotta, *Critical slowing down and error analysis in lattice QCD simulations*. Nucl.Phys.B 845 (2011) 93-119.</span>
-<span class="sd">- Alberto Ramos, *Automatic differentiation for error analysis of Monte Carlo data*. Comput.Phys.Commun. 238 (2019) 19-35.</span>
-<span class="sd">&#39;&#39;&#39;</span>
-<span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="o">*</span>
-<span class="kn">from</span> <span class="nn">.correlators</span> <span class="kn">import</span> <span class="o">*</span>
-<span class="kn">from</span> <span class="nn">.fits</span> <span class="kn">import</span> <span class="o">*</span>
-<span class="kn">from</span> <span class="nn">.misc</span> <span class="kn">import</span> <span class="o">*</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dirac</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="nb">input</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">linalg</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">mpm</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">roots</span>
-
-<span class="kn">from</span> <span class="nn">.version</span> <span class="kn">import</span> <span class="n">__version__</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="sa">r</span><span class="sd">&#39;&#39;&#39;</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="sd"># What is pyerrors?</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="sd">`pyerrors` is a python package for error computation and propagation of Markov chain Monte Carlo data.</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="sd">It is based on the gamma method [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017). Some of its features are:</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="sd">- automatic differentiation for exact liner error propagation as suggested in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289) (partly based on the [autograd](https://github.com/HIPS/autograd) package).</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="sd">- treatment of slow modes in the simulation as suggested in [arXiv:1009.5228](https://arxiv.org/abs/1009.5228).</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="sd">- coherent error propagation for data from different Markov chains.</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a><span class="sd">- non-linear fits with x- and y-errors and exact linear error propagation based on automatic differentiation as introduced in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289).</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="sd">- real and complex matrix operations and their error propagation based on automatic differentiation (Matrix inverse, Cholesky decomposition, calculation of eigenvalues and eigenvectors, singular value decomposition...).</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="sd">There exist similar publicly available implementations of gamma method error analysis suites in [Fortran](https://gitlab.ift.uam-csic.es/alberto/aderrors), [Julia](https://gitlab.ift.uam-csic.es/alberto/aderrors.jl) and [Python](https://github.com/mbruno46/pyobs).</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="sd">## Basic example</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd">```python</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd">import numpy as np</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd">import pyerrors as pe</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="sd">my_obs = pe.Obs([samples], [&#39;ensemble_name&#39;]) # Initialize an Obs object</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd">my_new_obs = 2 * np.log(my_obs) / my_obs ** 2 # Construct derived Obs object</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd">my_new_obs.gamma_method()                     # Estimate the statistical error</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd">print(my_new_obs)                             # Print the result to stdout</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="sd">&gt; 0.31498(72)</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="sd">```</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="sd"># The `Obs` class</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a><span class="sd">`pyerrors` introduces a new datatype, `Obs`, which simplifies error propagation and estimation for auto- and cross-correlated data.</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="sd">An `Obs` object can be initialized with two arguments, the first is a list containing the samples for an observable from a Monte Carlo chain.</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a><span class="sd">The samples can either be provided as python list or as numpy array.</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a><span class="sd">The second argument is a list containing the names of the respective Monte Carlo chains as strings. These strings uniquely identify a Monte Carlo chain/ensemble.</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a><span class="sd">```python</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a><span class="sd">import pyerrors as pe</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a><span class="sd">my_obs = pe.Obs([samples], [&#39;ensemble_name&#39;])</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a><span class="sd">```</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a><span class="sd">## Error propagation</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a><span class="sd">When performing mathematical operations on `Obs` objects the correct error propagation is intrinsically taken care of using a first order Taylor expansion</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a><span class="sd">$$\delta_f^i=\sum_\alpha \bar{f}_\alpha \delta_\alpha^i\,,\quad \delta_\alpha^i=a_\alpha^i-\bar{a}_\alpha\,,$$</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a><span class="sd">as introduced in [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017).</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a><span class="sd">The required derivatives $\bar{f}_\alpha$ are evaluated up to machine precision via automatic differentiation as suggested in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289).</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a><span class="sd">The `Obs` class is designed such that mathematical numpy functions can be used on `Obs` just as for regular floats.</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a><span class="sd">```python</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a><span class="sd">import numpy as np</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a><span class="sd">import pyerrors as pe</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a><span class="sd">my_obs1 = pe.Obs([samples1], [&#39;ensemble_name&#39;])</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a><span class="sd">my_obs2 = pe.Obs([samples2], [&#39;ensemble_name&#39;])</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a><span class="sd">my_sum = my_obs1 + my_obs2</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a><span class="sd">my_m_eff = np.log(my_obs1 / my_obs2)</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a><span class="sd">iamzero = my_m_eff - my_m_eff</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a><span class="sd"># Check that value and fluctuations are zero within machine precision</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a><span class="sd">print(iamzero == 0.0)</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a><span class="sd">&gt; True</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a><span class="sd">```</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a><span class="sd">## Error estimation</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a><span class="sd">The error estimation within `pyerrors` is based on the gamma method introduced in [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017).</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a><span class="sd">After having arrived at the derived quantity of interest the `gamma_method` can be called as detailed in the following example.</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a><span class="sd">```python</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a><span class="sd">my_sum.gamma_method()</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a><span class="sd">print(my_sum)</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a><span class="sd">&gt; 1.70(57)</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a><span class="sd">my_sum.details()</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a><span class="sd">&gt; Result	 1.70000000e+00 +/- 5.72046658e-01 +/- 7.56746598e-02 (33.650%)</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a><span class="sd">&gt;  t_int	 2.71422900e+00 +/- 6.40320983e-01 S = 2.00</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a><span class="sd">&gt; 1000 samples in 1 ensemble:</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble_name&#39; : 1000 configurations (from 1 to 1000)</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a><span class="sd">```</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a><span class="sd">We use the following definition of the integrated autocorrelation time established in [Madras &amp; Sokal 1988](https://link.springer.com/article/10.1007/BF01022990)</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a><span class="sd">$$\tau_\mathrm{int}=\frac{1}{2}+\sum_{t=1}^{W}\rho(t)\geq \frac{1}{2}\,.$$</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a><span class="sd">The window $W$ is determined via the automatic windowing procedure described in [arXiv:hep-lat/0306017](https://arxiv.org/abs/hep-lat/0306017).</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a><span class="sd">The standard value for the parameter $S$ of this automatic windowing procedure is $S=2$. Other values for $S$ can be passed to the `gamma_method` as parameter.</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a><span class="sd">```python</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a><span class="sd">my_sum.gamma_method(S=3.0)</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a><span class="sd">my_sum.details()</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a><span class="sd">&gt; Result	 1.70000000e+00 +/- 6.30675201e-01 +/- 1.04585650e-01 (37.099%)</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a><span class="sd">&gt;  t_int	 3.29909703e+00 +/- 9.77310102e-01 S = 3.00</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a><span class="sd">&gt; 1000 samples in 1 ensemble:</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble_name&#39; : 1000 configurations (from 1 to 1000)</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a><span class="sd">```</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a><span class="sd">The integrated autocorrelation time $\tau_\mathrm{int}$ and the autocorrelation function $\rho(W)$ can be monitored via the methods `pyerrors.obs.Obs.plot_tauint` and `pyerrors.obs.Obs.plot_tauint`.</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a><span class="sd">If the parameter $S$ is set to zero it is assumed that the dataset does not exhibit any autocorrelation and the windowsize is chosen to be zero.</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a><span class="sd">In this case the error estimate is identical to the sample standard error.</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a><span class="sd">### Exponential tails</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a><span class="sd">Slow modes in the Monte Carlo history can be accounted for by attaching an exponential tail to the autocorrelation function $\rho$ as suggested in [arXiv:1009.5228](https://arxiv.org/abs/1009.5228). The longest autocorrelation time in the history, $\tau_\mathrm{exp}$, can be passed to the `gamma_method` as parameter. In this case the automatic windowing procedure is vacated and the parameter $S$ does not affect the error estimate.</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a><span class="sd">```python</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a><span class="sd">my_sum.gamma_method(tau_exp=7.2)</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a><span class="sd">my_sum.details()</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a><span class="sd">&gt; Result	 1.70000000e+00 +/- 6.28097762e-01 +/- 5.79077524e-02 (36.947%)</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a><span class="sd">&gt;  t_int	 3.27218667e+00 +/- 7.99583654e-01 tau_exp = 7.20,  N_sigma = 1</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a><span class="sd">&gt; 1000 samples in 1 ensemble:</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble_name&#39; : 1000 configurations (from 1 to 1000)</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a><span class="sd">```</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a><span class="sd">For the full API see `pyerrors.obs.Obs.gamma_method`.</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a><span class="sd">## Multiple ensembles/replica</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a><span class="sd">Error propagation for multiple ensembles (Markov chains with different simulation parameters) is handled automatically. Ensembles are uniquely identified by their `name`.</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a><span class="sd">```python</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a><span class="sd">obs1 = pe.Obs([samples1], [&#39;ensemble1&#39;])</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a><span class="sd">obs2 = pe.Obs([samples2], [&#39;ensemble2&#39;])</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a><span class="sd">my_sum = obs1 + obs2</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a><span class="sd">my_sum.details()</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a><span class="sd">&gt; Result   2.00697958e+00</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a><span class="sd">&gt; 1500 samples in 2 ensembles:</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 1000 configurations (from 1 to 1000)</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble2&#39; : 500 configurations (from 1 to 500)</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a><span class="sd">```</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a><span class="sd">`pyerrors` identifies multiple replica (independent Markov chains with identical simulation parameters) by the vertical bar `|` in the name of the data set.</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a><span class="sd">```python</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a><span class="sd">obs1 = pe.Obs([samples1], [&#39;ensemble1|r01&#39;])</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a><span class="sd">obs2 = pe.Obs([samples2], [&#39;ensemble1|r02&#39;])</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a><span class="sd">&gt; my_sum = obs1 + obs2</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a><span class="sd">&gt; my_sum.details()</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a><span class="sd">&gt; Result   2.00697958e+00</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a><span class="sd">&gt; 1500 samples in 1 ensemble:</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble1&#39;</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a><span class="sd">&gt;     · Replicum &#39;r01&#39; : 1000 configurations (from 1 to 1000)</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a><span class="sd">&gt;     · Replicum &#39;r02&#39; : 500 configurations (from 1 to 500)</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a><span class="sd">```</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a><span class="sd">### Error estimation for multiple ensembles</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a><span class="sd">In order to keep track of different error analysis parameters for different ensembles one can make use of global dictionaries as detailed in the following example.</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a><span class="sd">```python</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a><span class="sd">pe.Obs.S_dict[&#39;ensemble1&#39;] = 2.5</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a><span class="sd">pe.Obs.tau_exp_dict[&#39;ensemble2&#39;] = 8.0</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a><span class="sd">pe.Obs.tau_exp_dict[&#39;ensemble3&#39;] = 2.0</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a><span class="sd">```</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a><span class="sd">In case the `gamma_method` is called without any parameters it will use the values specified in the dictionaries for the respective ensembles.</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a><span class="sd">Passing arguments to the `gamma_method` still dominates over the dictionaries.</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a><span class="sd">## Irregular Monte Carlo chains</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a><span class="sd">`Obs` objects defined on irregular Monte Carlo chains can be initialized with the parameter `idl`.</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a><span class="sd">```python</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a><span class="sd"># Observable defined on configurations 20 to 519</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a><span class="sd">obs1 = pe.Obs([samples1], [&#39;ensemble1&#39;], idl=[range(20, 520)])</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a><span class="sd">obs1.details()</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a><span class="sd">&gt; Result	 9.98319881e-01</span>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a><span class="sd">&gt; 500 samples in 1 ensemble:</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 500 configurations (from 20 to 519)</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a><span class="sd"># Observable defined on every second configuration between 5 and 1003</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a><span class="sd">obs2 = pe.Obs([samples2], [&#39;ensemble1&#39;], idl=[range(5, 1005, 2)])</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a><span class="sd">obs2.details()</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a><span class="sd">&gt; Result	 9.99100712e-01</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a><span class="sd">&gt; 500 samples in 1 ensemble:</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 500 configurations (from 5 to 1003 in steps of 2)</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a><span class="sd"># Observable defined on configurations 2, 9, 28, 29 and 501</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a><span class="sd">obs3 = pe.Obs([samples3], [&#39;ensemble1&#39;], idl=[[2, 9, 28, 29, 501]])</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a><span class="sd">obs3.details()</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a><span class="sd">&gt; Result	 1.01718064e+00</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a><span class="sd">&gt; 5 samples in 1 ensemble:</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a><span class="sd">&gt;   · Ensemble &#39;ensemble1&#39; : 5 configurations (irregular range)</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a><span class="sd">```</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a><span class="sd">`Obs` objects defined on regular and irregular histories of the same ensemble can be combined with each other and the correct error propagation and estimation is automatically taken care of.</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a><span class="sd">**Warning:** Irregular Monte Carlo chains can result in odd patterns in the autocorrelation functions.</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a><span class="sd">Make sure to check the autocorrelation time with e.g. `pyerrors.obs.Obs.plot_rho` or `pyerrors.obs.Obs.plot_tauint`.</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a><span class="sd">For the full API see `pyerrors.obs.Obs`.</span>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a><span class="sd"># Correlators</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a><span class="sd">When one is not interested in single observables but correlation functions, `pyerrors` offers the `Corr` class which simplifies the corresponding error propagation and provides the user with a set of standard methods. In order to initialize a `Corr` objects one needs to arrange the data as a list of `Obs`</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a><span class="sd">```python</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a><span class="sd">my_corr = pe.Corr([obs_0, obs_1, obs_2, obs_3])</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a><span class="sd">print(my_corr)</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a><span class="sd">&gt; x0/a	Corr(x0/a)</span>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a><span class="sd">&gt; ------------------</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a><span class="sd">&gt; 0	 0.7957(80)</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a><span class="sd">&gt; 1	 0.5156(51)</span>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a><span class="sd">&gt; 2	 0.3227(33)</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a><span class="sd">&gt; 3	 0.2041(21)</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a><span class="sd">```</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a><span class="sd">In case the correlation functions are not defined on the outermost timeslices, for example because of fixed boundary conditions, a padding can be introduced.</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a><span class="sd">```python</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a><span class="sd">my_corr = pe.Corr([obs_0, obs_1, obs_2, obs_3], padding=[1, 1])</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a><span class="sd">print(my_corr)</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a><span class="sd">&gt; x0/a	Corr(x0/a)</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a><span class="sd">&gt; ------------------</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a><span class="sd">&gt; 0</span>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a><span class="sd">&gt; 1	 0.7957(80)</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a><span class="sd">&gt; 2	 0.5156(51)</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a><span class="sd">&gt; 3	 0.3227(33)</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a><span class="sd">&gt; 4	 0.2041(21)</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a><span class="sd">&gt; 5</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a><span class="sd">```</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a><span class="sd">The individual entries of a correlator can be accessed via slicing</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a><span class="sd">```python</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a><span class="sd">print(my_corr[3])</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a><span class="sd">&gt; 0.3227(33)</span>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a><span class="sd">```</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a><span class="sd">Error propagation with the `Corr` class works very similar to `Obs` objects. Mathematical operations are overloaded and `Corr` objects can be computed together with other `Corr` objects, `Obs` objects or real numbers and integers.</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a><span class="sd">```python</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a><span class="sd">my_new_corr = 0.3 * my_corr[2] * my_corr * my_corr + 12 / my_corr</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a><span class="sd">```</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a><span class="sd">`pyerrors` provides the user with a set of regularly used methods for the manipulation of correlator objects:</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a><span class="sd">- `Corr.gamma_method` applies the gamma method to all entries of the correlator.</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a><span class="sd">- `Corr.m_eff` to construct effective masses. Various variants for periodic and fixed temporal boundary conditions are available.</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a><span class="sd">- `Corr.deriv` returns the first derivative of the correlator as `Corr`. Different discretizations of the numerical derivative are available.</span>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a><span class="sd">- `Corr.second_deriv` returns the second derivative of the correlator as `Corr`. Different discretizations of the numerical derivative are available.</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a><span class="sd">- `Corr.symmetric` symmetrizes parity even correlations functions, assuming periodic boundary conditions.</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a><span class="sd">- `Corr.anti_symmetric` anti-symmetrizes parity odd correlations functions, assuming periodic boundary conditions.</span>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a><span class="sd">- `Corr.T_symmetry` averages a correlator with its time symmetry partner, assuming fixed boundary conditions.</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a><span class="sd">- `Corr.plateau` extracts a plateau value from the correlator in a given range.</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a><span class="sd">- `Corr.roll` periodically shifts the correlator.</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a><span class="sd">- `Corr.reverse` reverses the time ordering of the correlator.</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a><span class="sd">- `Corr.correlate` constructs a disconnected correlation function from the correlator and another `Corr` or `Obs` object.</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a><span class="sd">- `Corr.reweight` reweights the correlator.</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a><span class="sd">`pyerrors` can also handle matrices of correlation functions and extract energy states from these matrices via a generalized eigenvalue problem (see `pyerrors.correlators.Corr.GEVP`).</span>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a><span class="sd">For the full API see `pyerrors.correlators.Corr`.</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a><span class="sd"># Complex valued observables</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a><span class="sd">`pyerrors` can handle complex valued observables via the class `pyerrors.obs.CObs`.</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a><span class="sd">`CObs` are initialized with a real and an imaginary part which both can be `Obs` valued.</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a><span class="sd">```python</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a><span class="sd">my_real_part = pe.Obs([samples1], [&#39;ensemble1&#39;])</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a><span class="sd">my_imag_part = pe.Obs([samples2], [&#39;ensemble1&#39;])</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a><span class="sd">my_cobs = pe.CObs(my_real_part, my_imag_part)</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a><span class="sd">my_cobs.gamma_method()</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a><span class="sd">print(my_cobs)</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a><span class="sd">&gt; (0.9959(91)+0.659(28)j)</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a><span class="sd">```</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a><span class="sd">Elementary mathematical operations are overloaded and samples are properly propagated as for the `Obs` class.</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a><span class="sd">```python</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a><span class="sd">my_derived_cobs = (my_cobs + my_cobs.conjugate()) / np.abs(my_cobs)</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a><span class="sd">my_derived_cobs.gamma_method()</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a><span class="sd">print(my_derived_cobs)</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a><span class="sd">&gt; (1.668(23)+0.0j)</span>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a><span class="sd">```</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a><span class="sd"># The `Covobs` class</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a><span class="sd">In many projects, auxiliary data that is not based on Monte Carlo chains enters. Examples are experimentally determined mesons masses which are used to set the scale or renormalization constants. These numbers come with an error that has to be propagated through the analysis. The `Covobs` class allows to define such quantities in `pyerrors`. Furthermore, external input might consist of correlated quantities. An example are the parameters of an interpolation formula, which are defined via mean values and a covariance matrix between all parameters. The contribution of the interpolation formula to the error of a derived quantity therefore might depend on the complete covariance matrix.</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a><span class="sd">This concept is built into the definition of `Covobs`. In `pyerrors`, external input is defined by $M$ mean values, a $M\times M$ covariance matrix, where $M=1$ is permissible, and a name that uniquely identifies the covariance matrix. Below, we define the pion mass, based on its mean value and error, 134.9768(5). Note, that the square of the error enters `cov_Obs`, since the second argument of this function is the covariance matrix of the `Covobs`.</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a><span class="sd">```python</span>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a><span class="sd">import pyerrors.obs as pe</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a><span class="sd">mpi = pe.cov_Obs(134.9768, 0.0005**2, &#39;pi^0 mass&#39;)</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a><span class="sd">mpi.gamma_method()</span>
+</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a><span class="sd">mpi.details()</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a><span class="sd">&gt; Result	 1.34976800e+02 +/- 5.00000000e-04 +/- 0.00000000e+00 (0.000%)</span>
+</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a><span class="sd">&gt;  pi^0 mass 	 5.00000000e-04</span>
+</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a><span class="sd">&gt; 0 samples in 1 ensemble:</span>
+</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a><span class="sd">&gt;   · Covobs   &#39;pi^0 mass&#39;</span>
+</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a><span class="sd">```</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a><span class="sd">The resulting object `mpi` is an `Obs` that contains a `Covobs`. In the following, it may be handled as any other `Obs`. The contribution of the covariance matrix to the error of an `Obs` is determined from the $M \times M$ covariance matrix $\Sigma$ and the gradient of the `Obs` with respect to the external quantities, which is the $1\times M$ Jacobian matrix $J$, via</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a><span class="sd">$$s = \sqrt{J^T \Sigma J}\,,$$</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a><span class="sd">where the Jacobian is computed for each derived quantity via automatic differentiation.</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>
+</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a><span class="sd">Correlated auxiliary data is defined similarly to above, e.g., via</span>
+</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a><span class="sd">```python</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a><span class="sd">RAP = pe.cov_Obs([16.7457, -19.0475], [[3.49591, -6.07560], [-6.07560, 10.5834]], &#39;R_AP, 1906.03445, (5.3a)&#39;)</span>
+</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a><span class="sd">print(RAP)</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a><span class="sd">&gt; [Obs[16.7(1.9)], Obs[-19.0(3.3)]]</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a><span class="sd">```</span>
+</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a><span class="sd">where `RAP` now is a list of two `Obs` that contains the two correlated parameters.</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a>
+</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a><span class="sd">Since the gradient of a derived observable with respect to an external covariance matrix is propagated through the entire analysis, the `Covobs` class allows to quote the derivative of a result with respect to the external quantities. If these derivatives are published together with the result, small shifts in the definition of external quantities, e.g., the definition of the physical point, can be performed a posteriori based on the published information. This may help to compare results of different groups. The gradient of an `Obs` `o` with respect to a covariance matrix with the identifying string `k` may be accessed via</span>
+</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a><span class="sd">```python</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a><span class="sd">o.covobs[k].grad</span>
+</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a><span class="sd">```</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a>
+</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a><span class="sd"># Error propagation in iterative algorithms</span>
+</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a>
+</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a><span class="sd">`pyerrors` supports exact linear error propagation for iterative algorithms like various variants of non-linear least sqaures fits or root finding. The derivatives required for the error propagation are calculated as described in [arXiv:1809.01289](https://arxiv.org/abs/1809.01289).</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a>
+</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a><span class="sd">## Least squares fits</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a>
+</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a><span class="sd">Standard non-linear least square fits with errors on the dependent but not the independent variables can be performed with `pyerrors.fits.least_squares`. As default solver the Levenberg-Marquardt algorithm implemented in [scipy](https://docs.scipy.org/doc/scipy/reference/generated/scipy.optimize.least_squares.html) is used.</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a>
+</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a><span class="sd">Fit functions have to be of the following form</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a><span class="sd">```python</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a><span class="sd">import autograd.numpy as anp</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a>
+</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a><span class="sd">def func(a, x):</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a><span class="sd">    return a[1] * anp.exp(-a[0] * x)</span>
+</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a><span class="sd">```</span>
+</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a><span class="sd">**It is important that numerical functions refer to `autograd.numpy` instead of `numpy` for the automatic differentiation in iterative algorithms to work properly.**</span>
+</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a>
+</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a><span class="sd">Fits can then be performed via</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a><span class="sd">```python</span>
+</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a><span class="sd">fit_result = pe.fits.least_squares(x, y, func)</span>
+</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a><span class="sd">print(&quot;\n&quot;, fit_result)</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a><span class="sd">&gt; Fit with 2 parameters</span>
+</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a><span class="sd">&gt; Method: Levenberg-Marquardt</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a><span class="sd">&gt; `ftol` termination condition is satisfied.</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a><span class="sd">&gt; chisquare/d.o.f.: 0.9593035785160936</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a>
+</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a><span class="sd">&gt;  Goodness of fit:</span>
+</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a><span class="sd">&gt; χ²/d.o.f. = 0.959304</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a><span class="sd">&gt; p-value   = 0.5673</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a><span class="sd">&gt; Fit parameters:</span>
+</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a><span class="sd">&gt; 0	 0.0548(28)</span>
+</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a><span class="sd">&gt; 1	 1.933(64)</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a><span class="sd">```</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a><span class="sd">where x is a `list` or `numpy.array` of `floats` and y is a `list` or `numpy.array` of `Obs`.</span>
+</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>
+</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a><span class="sd">Data stored in `Corr` objects can be fitted directly using the `Corr.fit` method.</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a><span class="sd">```python</span>
+</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a><span class="sd">my_corr = pe.Corr(y)</span>
+</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a><span class="sd">fit_result = my_corr.fit(func, fitrange=[12, 25])</span>
+</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a><span class="sd">```</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a><span class="sd">this can simplify working with absolute fit ranges and takes care of gaps in the data automatically.</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a>
+</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a><span class="sd">For fit functions with multiple independent variables the fit function can be of the form</span>
+</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a>
+</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a><span class="sd">```python</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a><span class="sd">def func(a, x):</span>
+</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a><span class="sd">    (x1, x2) = x</span>
+</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a><span class="sd">    return a[0] * x1 ** 2 + a[1] * x2</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a><span class="sd">```</span>
+</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a>
+</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a><span class="sd">`pyerrors` also supports correlated fits which can be triggered via the parameter `correlated_fit=True`.</span>
+</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a><span class="sd">Details about how the required covariance matrix is estimated can be found in `pyerrors.obs.covariance`.</span>
+</span><span id="L-357"><a href="#L-357"><span class="linenos">357</span></a>
+</span><span id="L-358"><a href="#L-358"><span class="linenos">358</span></a><span class="sd">Direct visualizations of the performed fits can be triggered via `resplot=True` or `qqplot=True`. For all available options see `pyerrors.fits.least_squares`.</span>
+</span><span id="L-359"><a href="#L-359"><span class="linenos">359</span></a>
+</span><span id="L-360"><a href="#L-360"><span class="linenos">360</span></a><span class="sd">## Total least squares fits</span>
+</span><span id="L-361"><a href="#L-361"><span class="linenos">361</span></a><span class="sd">`pyerrors` can also fit data with errors on both the dependent and independent variables using the total least squares method also referred to orthogonal distance regression as implemented in [scipy](https://docs.scipy.org/doc/scipy/reference/odr.html), see `pyerrors.fits.least_squares`. The syntax is identical to the standard least squares case, the only diffrence being that `x` also has to be a `list` or `numpy.array` of `Obs`.</span>
+</span><span id="L-362"><a href="#L-362"><span class="linenos">362</span></a>
+</span><span id="L-363"><a href="#L-363"><span class="linenos">363</span></a><span class="sd">For the full API see `pyerrors.fits` for fits and `pyerrors.roots` for finding roots of functions.</span>
+</span><span id="L-364"><a href="#L-364"><span class="linenos">364</span></a>
+</span><span id="L-365"><a href="#L-365"><span class="linenos">365</span></a><span class="sd"># Matrix operations</span>
+</span><span id="L-366"><a href="#L-366"><span class="linenos">366</span></a><span class="sd">`pyerrors` provides wrappers for `Obs`- and `CObs`-valued matrix operations based on `numpy.linalg`. The supported functions include:</span>
+</span><span id="L-367"><a href="#L-367"><span class="linenos">367</span></a><span class="sd">- `inv` for the matrix inverse.</span>
+</span><span id="L-368"><a href="#L-368"><span class="linenos">368</span></a><span class="sd">- `cholseky` for the Cholesky decomposition.</span>
+</span><span id="L-369"><a href="#L-369"><span class="linenos">369</span></a><span class="sd">- `det` for the matrix determinant.</span>
+</span><span id="L-370"><a href="#L-370"><span class="linenos">370</span></a><span class="sd">- `eigh` for eigenvalues and eigenvectors of hermitean matrices.</span>
+</span><span id="L-371"><a href="#L-371"><span class="linenos">371</span></a><span class="sd">- `eig` for eigenvalues of general matrices.</span>
+</span><span id="L-372"><a href="#L-372"><span class="linenos">372</span></a><span class="sd">- `pinv` for the Moore-Penrose pseudoinverse.</span>
+</span><span id="L-373"><a href="#L-373"><span class="linenos">373</span></a><span class="sd">- `svd` for the singular-value-decomposition.</span>
+</span><span id="L-374"><a href="#L-374"><span class="linenos">374</span></a>
+</span><span id="L-375"><a href="#L-375"><span class="linenos">375</span></a><span class="sd">For the full API see `pyerrors.linalg`.</span>
+</span><span id="L-376"><a href="#L-376"><span class="linenos">376</span></a>
+</span><span id="L-377"><a href="#L-377"><span class="linenos">377</span></a><span class="sd"># Export data</span>
+</span><span id="L-378"><a href="#L-378"><span class="linenos">378</span></a>
+</span><span id="L-379"><a href="#L-379"><span class="linenos">379</span></a><span class="sd">The preferred exported file format within `pyerrors` is json.gz. Files written to this format are valid JSON files that have been compressed using gzip. The structure of the content is inspired by the dobs format of the ALPHA collaboration. The aim of the format is to facilitate the storage of data in a self-contained way such that, even years after the creation of the file, it is possible to extract all necessary information:</span>
+</span><span id="L-380"><a href="#L-380"><span class="linenos">380</span></a><span class="sd">- What observables are stored? Possibly: How exactly are they defined.</span>
+</span><span id="L-381"><a href="#L-381"><span class="linenos">381</span></a><span class="sd">- How does each single ensemble or external quantity contribute to the error of the observable?</span>
+</span><span id="L-382"><a href="#L-382"><span class="linenos">382</span></a><span class="sd">- Who did write the file when and on which machine?</span>
+</span><span id="L-383"><a href="#L-383"><span class="linenos">383</span></a>
+</span><span id="L-384"><a href="#L-384"><span class="linenos">384</span></a><span class="sd">This can be achieved by storing all information in one single file. The export routines of `pyerrors` are written such that as much information as possible is written automatically as described in the following example</span>
+</span><span id="L-385"><a href="#L-385"><span class="linenos">385</span></a><span class="sd">```python</span>
+</span><span id="L-386"><a href="#L-386"><span class="linenos">386</span></a><span class="sd">my_obs = pe.Obs([samples], [&quot;test_ensemble&quot;])</span>
+</span><span id="L-387"><a href="#L-387"><span class="linenos">387</span></a><span class="sd">my_obs.tag = &quot;My observable&quot;</span>
+</span><span id="L-388"><a href="#L-388"><span class="linenos">388</span></a>
+</span><span id="L-389"><a href="#L-389"><span class="linenos">389</span></a><span class="sd">pe.input.json.dump_to_json(my_obs, &quot;test_output_file&quot;, description=&quot;This file contains a test observable&quot;)</span>
+</span><span id="L-390"><a href="#L-390"><span class="linenos">390</span></a><span class="sd"># For a single observable one can equivalently use the class method dump</span>
+</span><span id="L-391"><a href="#L-391"><span class="linenos">391</span></a><span class="sd">my_obs.dump(&quot;test_output_file&quot;, description=&quot;This file contains a test observable&quot;)</span>
+</span><span id="L-392"><a href="#L-392"><span class="linenos">392</span></a>
+</span><span id="L-393"><a href="#L-393"><span class="linenos">393</span></a><span class="sd">check = pe.input.json.load_json(&quot;test_output_file&quot;)</span>
+</span><span id="L-394"><a href="#L-394"><span class="linenos">394</span></a>
+</span><span id="L-395"><a href="#L-395"><span class="linenos">395</span></a><span class="sd">print(my_obs == check)</span>
+</span><span id="L-396"><a href="#L-396"><span class="linenos">396</span></a><span class="sd">&gt; True</span>
+</span><span id="L-397"><a href="#L-397"><span class="linenos">397</span></a><span class="sd">```</span>
+</span><span id="L-398"><a href="#L-398"><span class="linenos">398</span></a><span class="sd">The format also allows to directly write out the content of `Corr` objects or lists and arrays of `Obs` objects by passing the desired data to `pyerrors.input.json.dump_to_json`.</span>
+</span><span id="L-399"><a href="#L-399"><span class="linenos">399</span></a>
+</span><span id="L-400"><a href="#L-400"><span class="linenos">400</span></a><span class="sd">## json.gz format specification</span>
+</span><span id="L-401"><a href="#L-401"><span class="linenos">401</span></a><span class="sd">The first entries of the file provide optional auxiliary information:</span>
+</span><span id="L-402"><a href="#L-402"><span class="linenos">402</span></a><span class="sd">- `program` is a string that indicates which program was used to write the file.</span>
+</span><span id="L-403"><a href="#L-403"><span class="linenos">403</span></a><span class="sd">- `version` is a string that specifies the version of the format.</span>
+</span><span id="L-404"><a href="#L-404"><span class="linenos">404</span></a><span class="sd">- `who` is a string that specifies the user name of the creator of the file.</span>
+</span><span id="L-405"><a href="#L-405"><span class="linenos">405</span></a><span class="sd">- `date` is a string and contains the creation date of the file.</span>
+</span><span id="L-406"><a href="#L-406"><span class="linenos">406</span></a><span class="sd">- `host` is a string and contains the hostname of the machine where the file has been written.</span>
+</span><span id="L-407"><a href="#L-407"><span class="linenos">407</span></a><span class="sd">- `description` contains information on the content of the file. This field is not filled automatically in `pyerrors`. The user is advised to provide as detailed information as possible in this field. Examples are: Input files of measurements or simulations, LaTeX formulae or references to publications to specify how the observables have been computed, details on the analysis strategy, ... This field may be any valid JSON type. Strings, arrays or objects (equivalent to dicts in python) are well suited to provide information.</span>
+</span><span id="L-408"><a href="#L-408"><span class="linenos">408</span></a>
+</span><span id="L-409"><a href="#L-409"><span class="linenos">409</span></a><span class="sd">The only necessary entry of the file is the field</span>
+</span><span id="L-410"><a href="#L-410"><span class="linenos">410</span></a><span class="sd">-`obsdata`, an array that contains the actual data.</span>
+</span><span id="L-411"><a href="#L-411"><span class="linenos">411</span></a>
+</span><span id="L-412"><a href="#L-412"><span class="linenos">412</span></a><span class="sd">Each entry of the array belongs to a single structure of observables. Currently, these structures can be either of `Obs`, `list`, `numpy.ndarray`, `Corr`. All `Obs` inside a structure (with dimension &gt; 0) have to be defined on the same set of configurations. Different structures, that are represented by entries of the array `obsdata`, are treated independently. Each entry of the array `obsdata` has the following required entries:</span>
+</span><span id="L-413"><a href="#L-413"><span class="linenos">413</span></a><span class="sd">- `type` is a string that specifies the type of the structure. This allows to parse the content to the correct form after reading the file. It is always possible to interpret the content as list of Obs.</span>
+</span><span id="L-414"><a href="#L-414"><span class="linenos">414</span></a><span class="sd">- `value` is an array that contains the mean values of the Obs inside the structure.</span>
+</span><span id="L-415"><a href="#L-415"><span class="linenos">415</span></a><span class="sd">The following entries are optional:</span>
+</span><span id="L-416"><a href="#L-416"><span class="linenos">416</span></a><span class="sd">- `layout` is a string that specifies the layout of multi-dimensional structures. Examples are &quot;2, 2&quot; for a 2x2 dimensional matrix or  &quot;64, 4, 4&quot; for a Corr with $T=64$ and 4x4 matrices on each time slices. &quot;1&quot; denotes a single Obs. Multi-dimensional structures are stored in row-major format (see below).</span>
+</span><span id="L-417"><a href="#L-417"><span class="linenos">417</span></a><span class="sd">- `tag` is any JSON type. It contains additional information concerning the structure. The `tag` of an `Obs` in `pyerrors` is written here.</span>
+</span><span id="L-418"><a href="#L-418"><span class="linenos">418</span></a><span class="sd">- `reweighted` is a Bool that may be used to specify, whether the `Obs` in the structure have been reweighted.</span>
+</span><span id="L-419"><a href="#L-419"><span class="linenos">419</span></a><span class="sd">- `data` is an array that contains the data from MC chains. We will define it below.</span>
+</span><span id="L-420"><a href="#L-420"><span class="linenos">420</span></a><span class="sd">- `cdata` is an array that contains the data from external quantities with an error (`Covobs` in `pyerrors`). We will define it below.</span>
+</span><span id="L-421"><a href="#L-421"><span class="linenos">421</span></a>
+</span><span id="L-422"><a href="#L-422"><span class="linenos">422</span></a><span class="sd">The array `data` contains the data from MC chains. Each entry of the array corresponds to one ensemble and contains:</span>
+</span><span id="L-423"><a href="#L-423"><span class="linenos">423</span></a><span class="sd">- `id`, a string that contains the name of the ensemble</span>
+</span><span id="L-424"><a href="#L-424"><span class="linenos">424</span></a><span class="sd">- `replica`, an array that contains an entry per replica of the ensemble.</span>
+</span><span id="L-425"><a href="#L-425"><span class="linenos">425</span></a>
+</span><span id="L-426"><a href="#L-426"><span class="linenos">426</span></a><span class="sd">Each entry of `replica` contains</span>
+</span><span id="L-427"><a href="#L-427"><span class="linenos">427</span></a><span class="sd">`name`, a string that contains the name of the replica</span>
+</span><span id="L-428"><a href="#L-428"><span class="linenos">428</span></a><span class="sd">`deltas`, an array that contains the actual data.</span>
+</span><span id="L-429"><a href="#L-429"><span class="linenos">429</span></a>
+</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a><span class="sd">Each entry in `deltas` corresponds to one configuration of the replica and has $1+N$ many entries. The first entry is an integer that specifies the configuration number that, together with ensemble and replica name, may be used to uniquely identify the configuration on which the data has been obtained. The following N entries specify the deltas, i.e., the deviation of the observable from the mean value on this configuration, of each `Obs` inside the structure. Multi-dimensional structures are stored in a row-major format. For primary observables, such as correlation functions, $value + delta_i$ matches the primary data obtained on the configuration.</span>
+</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a>
+</span><span id="L-432"><a href="#L-432"><span class="linenos">432</span></a><span class="sd">The array `cdata` contains information about the contribution of auxiliary observables, represented by `Covobs` in `pyerrors`, to the total error of the observables. Each entry of the array belongs to one auxiliary covariance matrix and contains:</span>
+</span><span id="L-433"><a href="#L-433"><span class="linenos">433</span></a><span class="sd">- `id`, a string that identifies the covariance matrix</span>
+</span><span id="L-434"><a href="#L-434"><span class="linenos">434</span></a><span class="sd">- `layout`, a string that defines the dimensions of the $M\times M$ covariance matrix (has to be &quot;M, M&quot; or &quot;1&quot;).</span>
+</span><span id="L-435"><a href="#L-435"><span class="linenos">435</span></a><span class="sd">- `cov`, an array that contains the $M\times M$ many entries of the covariance matrix, stored in row-major format.</span>
+</span><span id="L-436"><a href="#L-436"><span class="linenos">436</span></a><span class="sd">- `grad`, an array that contains N entries, one for each `Obs` inside the structure. Each entry itself is an array, that contains the M gradients of the Nth observable  with respect to the quantity that corresponds to the Mth diagonal entry of the covariance matrix.</span>
+</span><span id="L-437"><a href="#L-437"><span class="linenos">437</span></a>
+</span><span id="L-438"><a href="#L-438"><span class="linenos">438</span></a><span class="sd">A JSON schema that may be used to verify the correctness of a file with respect to the format definition is stored in ./examples/json_schema.json. The schema is a self-descriptive format definition and contains an exemplary file.</span>
+</span><span id="L-439"><a href="#L-439"><span class="linenos">439</span></a>
+</span><span id="L-440"><a href="#L-440"><span class="linenos">440</span></a><span class="sd">Julia I/O routines for the json.gz format, compatible with [ADerrors.jl](https://gitlab.ift.uam-csic.es/alberto/aderrors.jl), can be found [here](https://github.com/fjosw/ADjson.jl).</span>
+</span><span id="L-441"><a href="#L-441"><span class="linenos">441</span></a>
+</span><span id="L-442"><a href="#L-442"><span class="linenos">442</span></a><span class="sd"># Citing</span>
+</span><span id="L-443"><a href="#L-443"><span class="linenos">443</span></a><span class="sd">If you use `pyerrors` for research that leads to a publication please consider citing:</span>
+</span><span id="L-444"><a href="#L-444"><span class="linenos">444</span></a><span class="sd">- Ulli Wolff, *Monte Carlo errors with less errors*. Comput.Phys.Commun. 156 (2004) 143-153, Comput.Phys.Commun. 176 (2007) 383 (erratum).</span>
+</span><span id="L-445"><a href="#L-445"><span class="linenos">445</span></a><span class="sd">- Stefan Schaefer, Rainer Sommer, Francesco Virotta, *Critical slowing down and error analysis in lattice QCD simulations*. Nucl.Phys.B 845 (2011) 93-119.</span>
+</span><span id="L-446"><a href="#L-446"><span class="linenos">446</span></a><span class="sd">- Alberto Ramos, *Automatic differentiation for error analysis of Monte Carlo data*. Comput.Phys.Commun. 238 (2019) 19-35.</span>
+</span><span id="L-447"><a href="#L-447"><span class="linenos">447</span></a><span class="sd">&#39;&#39;&#39;</span>
+</span><span id="L-448"><a href="#L-448"><span class="linenos">448</span></a><span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="o">*</span>
+</span><span id="L-449"><a href="#L-449"><span class="linenos">449</span></a><span class="kn">from</span> <span class="nn">.correlators</span> <span class="kn">import</span> <span class="o">*</span>
+</span><span id="L-450"><a href="#L-450"><span class="linenos">450</span></a><span class="kn">from</span> <span class="nn">.fits</span> <span class="kn">import</span> <span class="o">*</span>
+</span><span id="L-451"><a href="#L-451"><span class="linenos">451</span></a><span class="kn">from</span> <span class="nn">.misc</span> <span class="kn">import</span> <span class="o">*</span>
+</span><span id="L-452"><a href="#L-452"><span class="linenos">452</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dirac</span>
+</span><span id="L-453"><a href="#L-453"><span class="linenos">453</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="nb">input</span>
+</span><span id="L-454"><a href="#L-454"><span class="linenos">454</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">linalg</span>
+</span><span id="L-455"><a href="#L-455"><span class="linenos">455</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">mpm</span>
+</span><span id="L-456"><a href="#L-456"><span class="linenos">456</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">roots</span>
+</span><span id="L-457"><a href="#L-457"><span class="linenos">457</span></a>
+</span><span id="L-458"><a href="#L-458"><span class="linenos">458</span></a><span class="kn">from</span> <span class="nn">.version</span> <span class="kn">import</span> <span class="n">__version__</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/correlators.html b/docs/pyerrors/correlators.html
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@@ -207,1145 +207,1145 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">from</span> <span class="nn">itertools</span> <span class="kn">import</span> <span class="n">permutations</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">import</span> <span class="nn">scipy.linalg</span>
-<span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">reweight</span><span class="p">,</span> <span class="n">correlate</span><span class="p">,</span> <span class="n">CObs</span>
-<span class="kn">from</span> <span class="nn">.misc</span> <span class="kn">import</span> <span class="n">dump_object</span><span class="p">,</span> <span class="n">_assert_equal_properties</span>
-<span class="kn">from</span> <span class="nn">.fits</span> <span class="kn">import</span> <span class="n">least_squares</span>
-<span class="kn">from</span> <span class="nn">.roots</span> <span class="kn">import</span> <span class="n">find_root</span>
-
-
-<span class="k">class</span> <span class="nc">Corr</span><span class="p">:</span>
-    <span class="sd">&quot;&quot;&quot;The class for a correlator (time dependent sequence of pe.Obs).</span>
-
-<span class="sd">    Everything, this class does, can be achieved using lists or arrays of Obs.</span>
-<span class="sd">    But it is simply more convenient to have a dedicated object for correlators.</span>
-<span class="sd">    One often wants to add or multiply correlators of the same length at every timeslice and it is inconvenient</span>
-<span class="sd">    to iterate over all timeslices for every operation. This is especially true, when dealing with matrices.</span>
-
-<span class="sd">    The correlator can have two types of content: An Obs at every timeslice OR a GEVP</span>
-<span class="sd">    matrix at every timeslice. Other dependency (eg. spatial) are not supported.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data_input</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">prange</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize a Corr object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        data_input : list or array</span>
-<span class="sd">            list of Obs or list of arrays of Obs or array of Corrs</span>
-<span class="sd">        padding : list, optional</span>
-<span class="sd">            List with two entries where the first labels the padding</span>
-<span class="sd">            at the front of the correlator and the second the padding</span>
-<span class="sd">            at the back.</span>
-<span class="sd">        prange : list, optional</span>
-<span class="sd">            List containing the first and last timeslice of the plateau</span>
-<span class="sd">            region indentified for this correlator.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-
-            <span class="c1"># This only works, if the array fulfills the conditions below</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Incompatible array shape&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;If the input is an array, its elements must be of type pe.Corr&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only construct matrix correlator from single valued correlators&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All input Correlators must be defined over the same timeslices.&quot;</span><span class="p">)</span>
-
-            <span class="n">T</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">T</span>
-            <span class="n">N</span> <span class="o">=</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">input_as_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="nb">any</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Input ill-defined at different timeslices. Conversion leads to data loss!&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">array_at_timeslace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">array_at_timeslace</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">][</span><span class="n">t</span><span class="p">]</span>
-                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array_at_timeslace</span><span class="p">)</span>
-            <span class="n">data_input</span> <span class="o">=</span> <span class="n">input_as_list</span>
-
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">data_input</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="n">_assert_equal_properties</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data_input</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
-
-            <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">])</span> <span class="ow">and</span> <span class="nb">any</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="n">data_input</span>
-                <span class="n">noNull</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)]</span>  <span class="c1"># To check if the matrices are correct for all undefined elements</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Smearing matrices are not NxN&quot;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="p">(</span><span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">noNull</span><span class="p">])):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Items in data_input are not of identical shape.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noNull</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;data_input contains item of wrong type&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Data input was not given as list or correct array&quot;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-
-        <span class="c1"># An undefined timeslice is represented by the None object</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">+</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
-
-    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the content of timeslice idx&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">None</span>
-        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">reweighted</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">bool_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">reweighted</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]])</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">1</span><span class="p">):</span>
-            <span class="k">return</span> <span class="kc">True</span>
-        <span class="k">elif</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
-            <span class="k">return</span> <span class="kc">False</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Reweighting status of correlator corrupted.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Apply the gamma method to the content of the Corr.&quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">projected</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">vector_l</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vector_r</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;We need to project the Correlator with a Vector to get a single value at each timeslice.</span>
-
-<span class="sd">        The method can use one or two vectors.</span>
-<span class="sd">        If two are specified it returns v1@G@v2 (the order might be very important.)</span>
-<span class="sd">        By default it will return the lowest source, which usually means unsmeared-unsmeared (0,0), but it does not have to</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to project a Corr, that already has N=1.&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">vector_l</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">])</span>
-        <span class="k">elif</span><span class="p">(</span><span class="n">vector_r</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-            <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_l</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
-            <span class="n">vector_r</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_r</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_r</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
-            <span class="n">vector_l</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_l</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">vector_l</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">vector_r</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Vectors are of wrong shape!&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
-                <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">)),</span> <span class="n">vector_r</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">item</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># There are no checks here yet. There are so many possible scenarios, where this can go wrong.</span>
-            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                    <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">])),</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]])</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Picks the element [i,j] from every matrix and returns a correlator containing one Obs per timeslice.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        i : int</span>
-<span class="sd">            First index to be picked.</span>
-<span class="sd">        j : int</span>
-<span class="sd">            Second index to be picked.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to pick item from projected Corr&quot;</span><span class="p">)</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">plottable</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Outputs the correlator in a plotable format.</span>
-
-<span class="sd">        Outputs three lists containing the timeslice index, the value on each</span>
-<span class="sd">        timeslice and the error on each timeslice.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only make Corr[N=1] plottable&quot;</span><span class="p">)</span>
-        <span class="n">x_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">y_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">y_err_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">x_list</span><span class="p">,</span> <span class="n">y_list</span><span class="p">,</span> <span class="n">y_err_list</span>
-
-    <span class="k">def</span> <span class="nf">symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">))</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">anti_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Anti-symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
-
-        <span class="n">test</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
-        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]):</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be anti-symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">matrix_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Symmetrizes the correlator matrices on every timeslice.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">transposed</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">G</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">G</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">G</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-            <span class="k">return</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">transposed</span><span class="p">)</span> <span class="o">+</span> <span class="bp">self</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to symmetrize a correlator matrix, that already has N=1.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">GEVP</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Solve the general eigenvalue problem on the current correlator</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        t0 : int</span>
-<span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
-<span class="sd">        ts : int</span>
-<span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
-<span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
-<span class="sd">        state : int</span>
-<span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
-<span class="sd">        sorted_list : string</span>
-<span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
-<span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
-<span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
-<span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">sorted_list</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required if sorted_list=None&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">ts</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr not defined at t0/ts&quot;</span><span class="p">)</span>
-            <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
-            <span class="n">symmetric_corr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">matrix_symmetric</span><span class="p">()</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                    <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-                    <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="p">[</span><span class="n">ts</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-
-            <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
-            <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
-            <span class="k">return</span> <span class="n">sp_vec</span>
-        <span class="k">else</span><span class="p">:</span>
-
-            <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-                            <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-
-                    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvalue&quot;</span><span class="p">:</span>
-                        <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
-                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vec</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vecs</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvector&quot;</span><span class="p">:</span>
-                <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required for the Eigenvector sorting method.&quot;</span><span class="p">)</span>
-                <span class="n">all_vecs</span> <span class="o">=</span> <span class="n">_sort_vectors</span><span class="p">(</span><span class="n">all_vecs</span><span class="p">,</span> <span class="n">ts</span><span class="p">)</span>
-                <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span><span class="p">[</span><span class="n">state</span><span class="p">]</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">all_vecs</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">all_vecs</span>
-
-    <span class="k">def</span> <span class="nf">Eigenvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Determines the eigenvalue of the GEVP by solving and projecting the correlator</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        t0 : int</span>
-<span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
-<span class="sd">        ts : int</span>
-<span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
-<span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
-<span class="sd">        state : int</span>
-<span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
-<span class="sd">        sorted_list : string</span>
-<span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
-<span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
-<span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
-<span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">vec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GEVP</span><span class="p">(</span><span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="n">ts</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="n">sorted_list</span><span class="p">)</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">projected</span><span class="p">(</span><span class="n">vec</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">Hankel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">,</span> <span class="n">periodic</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Constructs an NxN Hankel matrix</span>
-
-<span class="sd">        C(t) c(t+1) ... c(t+n-1)</span>
-<span class="sd">        C(t+1) c(t+2) ... c(t+n)</span>
-<span class="sd">        .................</span>
-<span class="sd">        C(t+(n-1)) c(t+n) ... c(t+2(n-1))</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        N : int</span>
-<span class="sd">            Dimension of the Hankel matrix</span>
-<span class="sd">        periodic : bool, optional</span>
-<span class="sd">            determines whether the matrix is extended periodically</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multi-operator Prony not implemented!&quot;</span><span class="p">)</span>
-
-        <span class="n">array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
-
-        <span class="k">def</span> <span class="nf">wrap</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-            <span class="k">while</span> <span class="n">i</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="n">i</span> <span class="o">-=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-            <span class="k">return</span> <span class="n">i</span>
-
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">periodic</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">wrap</span><span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)][</span><span class="mi">0</span><span class="p">]</span>
-                    <span class="k">elif</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">roll</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dt</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Periodically shift the correlator by dt timeslices</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dt : int</span>
-<span class="sd">            number of timeslices</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">roll</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">),</span> <span class="n">dt</span><span class="p">)))</span>
-
-    <span class="k">def</span> <span class="nf">reverse</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reverse the time ordering of the Corr&quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[::</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">thin</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Thin out a correlator to suppress correlations</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        spacing : int</span>
-<span class="sd">            Keep only every &#39;spacing&#39;th entry of the correlator</span>
-<span class="sd">        offset : int</span>
-<span class="sd">            Offset the equal spacing</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="n">offset</span> <span class="o">+</span> <span class="n">t</span><span class="p">)</span> <span class="o">%</span> <span class="n">spacing</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Correlate the correlator with another correlator or Obs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        partner : Obs or Corr</span>
-<span class="sd">            partner to correlate the correlator with.</span>
-<span class="sd">            Can either be an Obs which is correlated with all entries of the</span>
-<span class="sd">            correlator or a Corr of same length.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
-                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>  <span class="c1"># Should this include CObs?</span>
-                    <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only correlate with an Obs or a Corr.&quot;</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">weight</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reweight the correlator.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        weight : Obs</span>
-<span class="sd">            Reweighting factor. An Observable that has to be defined on a superset of the</span>
-<span class="sd">            configurations in obs[i].idl for all i.</span>
-<span class="sd">        all_configs : bool</span>
-<span class="sd">            if True, the reweighted observables are normalized by the average of</span>
-<span class="sd">            the reweighting factor on all configurations in weight.idl and not</span>
-<span class="sd">            on the configurations in obs[i].idl.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">t_slice</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">T_symmetry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">,</span> <span class="n">parity</span><span class="o">=+</span><span class="mi">1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the time symmetry average of the correlator and its partner</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        partner : Corr</span>
-<span class="sd">            Time symmetry partner of the Corr</span>
-<span class="sd">        partity : int</span>
-<span class="sd">            Parity quantum number of the correlator, can be +1 or -1</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;T partner has to be a Corr object.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">parity</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="o">+</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Parity has to be +1 or -1.&quot;</span><span class="p">)</span>
-        <span class="n">T_partner</span> <span class="o">=</span> <span class="n">parity</span> <span class="o">*</span> <span class="n">partner</span><span class="o">.</span><span class="n">reverse</span><span class="p">()</span>
-
-        <span class="n">t_slices</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">test</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">T_partner</span><span class="p">)</span>
-        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">t_slice</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">5</span><span class="p">):</span>
-                    <span class="n">t_slices</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">t_slices</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;T symmetry partners do not agree within 5 sigma on time slices &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">t_slices</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">+</span> <span class="n">T_partner</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
-
-    <span class="k">def</span> <span class="nf">deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the first derivative of the correlator with respect to x0.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            decides which definition of the finite differences derivative is used.</span>
-<span class="sd">            Available choice: symmetric, forward, backward, improved, default: symmetric</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;forward&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;backward&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">second_deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the second derivative of the correlator with respect to x0.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            decides which definition of the finite differences derivative is used.</span>
-<span class="sd">            Available choice: symmetric, improved, default: symmetric</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">30</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">m_eff</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s1">&#39;log&#39;</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns the effective mass of the correlator as correlator object</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            log : uses the standard effective mass log(C(t) / C(t+1))</span>
-<span class="sd">            cosh, periodic : Use periodicitiy of the correlator by solving C(t) / C(t+1) = cosh(m * (t - T/2)) / cosh(m * (t + 1 - T/2)) for m.</span>
-<span class="sd">            sinh : Use anti-periodicitiy of the correlator by solving C(t) / C(t+1) = sinh(m * (t - T/2)) / sinh(m * (t + 1 - T/2)) for m.</span>
-<span class="sd">            See, e.g., arXiv:1205.5380</span>
-<span class="sd">            arccosh : Uses the explicit form of the symmetrized correlator (not recommended)</span>
-<span class="sd">        guess : float</span>
-<span class="sd">            guess for the root finder, only relevant for the root variant</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator must be projected before getting m_eff&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;log&#39;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
-
-            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
-
-        <span class="k">elif</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">,</span> <span class="s1">&#39;sinh&#39;</span><span class="p">]:</span>
-            <span class="k">if</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">]:</span>
-                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">cosh</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sinh</span>
-
-            <span class="k">def</span> <span class="nf">root_function</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">/</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">-</span> <span class="n">d</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="c1"># Fill the two timeslices in the middle of the lattice with their predecessors</span>
-                <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;sinh&#39;</span> <span class="ow">and</span> <span class="n">t</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">find_root</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">root_function</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="n">guess</span><span class="p">)))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
-
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;arccosh&#39;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;m_eff is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown variant.&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">fitrange</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Fits function to the data</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        function : obj</span>
-<span class="sd">            function to fit to the data. See fits.least_squares for details.</span>
-<span class="sd">        fitrange : list</span>
-<span class="sd">            Two element list containing the timeslices on which the fit is supposed to start and stop.</span>
-<span class="sd">            Caution: This range is inclusive as opposed to standard python indexing.</span>
-<span class="sd">            `fitrange=[4, 6]` corresponds to the three entries 4, 5 and 6.</span>
-<span class="sd">            If not specified, self.prange or all timeslices are used.</span>
-<span class="sd">        silent : bool</span>
-<span class="sd">            Decides whether output is printed to the standard output.</span>
-<span class="sd">        &#39;&#39;&#39;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before fitting&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">fitrange</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-                <span class="n">fitrange</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">fitrange</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fitrange</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to be a list with two elements&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">fitrange</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to have exactly two elements [fit_start, fit_stop]&quot;</span><span class="p">)</span>
-
-        <span class="n">xs</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">ys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">xs</span><span class="p">,</span> <span class="n">ys</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">result</span>
-
-    <span class="k">def</span> <span class="nf">plateau</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">plateau_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fit&quot;</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Extract a plateau value from a Corr object</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        plateau_range : list</span>
-<span class="sd">            list with two entries, indicating the first and the last timeslice</span>
-<span class="sd">            of the plateau region.</span>
-<span class="sd">        method : str</span>
-<span class="sd">            method to extract the plateau.</span>
-<span class="sd">                &#39;fit&#39; fits a constant to the plateau region</span>
-<span class="sd">                &#39;avg&#39;, &#39;average&#39; or &#39;mean&#39; just average over the given timeslices.</span>
-<span class="sd">        auto_gamma : bool</span>
-<span class="sd">            apply gamma_method with default parameters to the Corr. Defaults to None</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">plateau_range</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-                <span class="n">plateau_range</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;no plateau range provided&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before getting a plateau.&quot;</span><span class="p">)</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;plateau is undefined at all timeslices in plateaurange.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;fit&quot;</span><span class="p">:</span>
-            <span class="k">def</span> <span class="nf">const_func</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">t</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">const_func</span><span class="p">,</span> <span class="n">plateau_range</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">elif</span> <span class="n">method</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;avg&quot;</span><span class="p">,</span> <span class="s2">&quot;average&quot;</span><span class="p">,</span> <span class="s2">&quot;mean&quot;</span><span class="p">]:</span>
-            <span class="n">returnvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">([</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
-            <span class="k">return</span> <span class="n">returnvalue</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsupported plateau method: &quot;</span> <span class="o">+</span> <span class="n">method</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">set_prange</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prange</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Sets the attribute prange of the Corr object.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">prange</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;prange must be a list or array with two values&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">((</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">))</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="nb">int</span><span class="p">))):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must be integers&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must define a range in the interval 0,T&quot;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
-        <span class="k">return</span>
-
-    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">y_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">plateau</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fit_res</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ylabel</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plots the correlator using the tag of the correlator as label if available.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        x_range : list</span>
-<span class="sd">            list of two values, determining the range of the x-axis e.g. [4, 8]</span>
-<span class="sd">        comp : Corr or list of Corr</span>
-<span class="sd">            Correlator or list of correlators which are plotted for comparison.</span>
-<span class="sd">            The tags of these correlators are used as labels if available.</span>
-<span class="sd">        logscale : bool</span>
-<span class="sd">            Sets y-axis to logscale</span>
-<span class="sd">        plateau : Obs</span>
-<span class="sd">            Plateau value to be visualized in the figure</span>
-<span class="sd">        fit_res : Fit_result</span>
-<span class="sd">            Fit_result object to be visualized</span>
-<span class="sd">        ylabel : str</span>
-<span class="sd">            Label for the y-axis</span>
-<span class="sd">        save : str</span>
-<span class="sd">            path to file in which the figure should be saved</span>
-<span class="sd">        auto_gamma : bool</span>
-<span class="sd">            Apply the gamma method with standard parameters to all correlators and plateau values before plotting.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before plotting&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-
-        <span class="k">if</span> <span class="n">x_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">x_range</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-
-        <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-        <span class="n">ax1</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
-
-        <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">logscale</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">y_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">y_min</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-                    <span class="n">y_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-                    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">([</span><span class="n">y_min</span> <span class="o">-</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">),</span> <span class="n">y_max</span> <span class="o">+</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">)])</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">pass</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">y_range</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">comp</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="p">(</span><span class="n">Corr</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
-                <span class="k">for</span> <span class="n">corr</span> <span class="ow">in</span> <span class="n">comp</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="p">[</span><span class="n">comp</span><span class="p">]:</span>
-                    <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-                        <span class="n">corr</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-                    <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="n">corr</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
-                    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">corr</span><span class="o">.</span><span class="n">tag</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;comp&#39; must be a correlator or a list of correlators.&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">plateau</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">plateau</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-                    <span class="n">plateau</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.6</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">plateau</span><span class="p">))</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">axhspan</span><span class="p">(</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;plateau&#39; must be an Obs&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">fit_res</span><span class="p">:</span>
-            <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">)</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span>
-                     <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_function</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span>
-                     <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
-
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ylabel</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="n">ylabel</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">,</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">])</span>
-
-        <span class="n">handles</span><span class="p">,</span> <span class="n">labels</span> <span class="o">=</span> <span class="n">ax1</span><span class="o">.</span><span class="n">get_legend_handles_labels</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">labels</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-        <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">save</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;save&#39; has to be a string.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">spaghetti_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Produces a spaghetti plot of the correlator suited to monitor exceptional configurations.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        logscale : bool</span>
-<span class="sd">            Determines whether the scale of the y-axis is logarithmic or standard.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator needs to be projected first.&quot;</span><span class="p">)</span>
-
-        <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]))</span>
-        <span class="n">x0_vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">n</span> <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span><span class="o">.</span><span class="n">T</span>
-
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">ax</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
-                <span class="n">ax</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x0_vals</span><span class="p">,</span> <span class="n">dat</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
-
-            <span class="k">if</span> <span class="n">logscale</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-                <span class="n">ax</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
-
-            <span class="n">ax</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Dumps the Corr into a file of chosen type</span>
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        filename : str</span>
-<span class="sd">            Name of the file to be saved.</span>
-<span class="sd">        datatype : str</span>
-<span class="sd">            Format of the exported file. Supported formats include</span>
-<span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
-<span class="sd">        path : str</span>
-<span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
-            <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
-            <span class="n">dump_to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_name</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
-            <span class="n">dump_object</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">(</span><span class="nb">range</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
-        <span class="n">content_string</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
-
-        <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Corr T=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; N=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>  <span class="c1"># +&quot; filled with&quot;+ str(type(self.content[0][0])) there should be a good solution here</span>
-
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Description: &quot;</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">content_string</span>
-
-        <span class="k">if</span> <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-            <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
-        <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;x0/a</span><span class="se">\t</span><span class="s1">Corr(x0/a)</span><span class="se">\n</span><span class="s1">------------------</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">sub_corr</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]]):</span>
-            <span class="k">if</span> <span class="n">sub_corr</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-                <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">sub_corr</span><span class="p">:</span>
-                    <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">element</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-                <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">return</span> <span class="n">content_string</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
-
-    <span class="c1"># We define the basic operations, that can be performed with correlators.</span>
-    <span class="c1"># While */+- get defined here, they only work for Corr*Obs and not Obs*Corr.</span>
-    <span class="c1"># This is because Obs*Corr checks Obs.__mul__ first and does not catch an exception.</span>
-    <span class="c1"># One could try and tell Obs to check if the y in __mul__ is a Corr and</span>
-
-    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">)):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Addition of Corrs with different shape&quot;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
-                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr + wrong type&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
-                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr * wrong type&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="k">continue</span>
-                <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Division returns completely undefined correlator&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">is_zero</span><span class="p">():</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="n">y</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
-                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Corr / wrong type&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="o">-</span><span class="mf">1.</span> <span class="o">*</span> <span class="n">item</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="p">(</span><span class="o">-</span><span class="n">y</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="o">**</span><span class="n">y</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Type of exponent not supported&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="c1"># The numpy functions:</span>
-    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">**</span><span class="mf">0.5</span>
-
-    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_apply_func_to_corr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">func</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">func</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">continue</span>
-            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-        <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Operation returns undefined correlator&#39;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsin</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccos</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctan</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctanh</span><span class="p">)</span>
-
-    <span class="c1"># Right hand side operations (require tweak in main module to work)</span>
-    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">)</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">def</span> <span class="nf">return_real</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">real</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span>
-
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_real</span><span class="p">)</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">def</span> <span class="nf">return_imag</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">imag</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span> <span class="o">*</span> <span class="mi">0</span>  <span class="c1"># So it stays the right type</span>
-
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_imag</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_sort_vectors</span><span class="p">(</span><span class="n">vec_set</span><span class="p">,</span> <span class="n">ts</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Helper function used to find a set of Eigenvectors consistent over all timeslices&quot;&quot;&quot;</span>
-    <span class="n">reference_sorting</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">vec_set</span><span class="p">[</span><span class="n">ts</span><span class="p">])</span>
-    <span class="n">N</span> <span class="o">=</span> <span class="n">reference_sorting</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">sorted_vec_set</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">vec_set</span><span class="p">)):</span>
-        <span class="k">if</span> <span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">sorted_vec_set</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="ow">not</span> <span class="n">t</span> <span class="o">==</span> <span class="n">ts</span><span class="p">:</span>
-            <span class="n">perms</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">permutations</span><span class="p">([</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">)],</span> <span class="n">N</span><span class="p">)]</span>
-            <span class="n">best_score</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="k">for</span> <span class="n">perm</span> <span class="ow">in</span> <span class="n">perms</span><span class="p">:</span>
-                <span class="n">current_score</span> <span class="o">=</span> <span class="mi">1</span>
-                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                    <span class="n">new_sorting</span> <span class="o">=</span> <span class="n">reference_sorting</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
-                    <span class="n">new_sorting</span><span class="p">[</span><span class="n">perm</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">k</span><span class="p">]</span>
-                    <span class="n">current_score</span> <span class="o">*=</span> <span class="nb">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">det</span><span class="p">(</span><span class="n">new_sorting</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">current_score</span> <span class="o">&gt;</span> <span class="n">best_score</span><span class="p">:</span>
-                    <span class="n">best_score</span> <span class="o">=</span> <span class="n">current_score</span>
-                    <span class="n">best_perm</span> <span class="o">=</span> <span class="n">perm</span>
-            <span class="n">sorted_vec_set</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">best_perm</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">sorted_vec_set</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-
-    <span class="k">return</span> <span class="n">sorted_vec_set</span>
-
-
-<span class="k">def</span> <span class="nf">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">):</span>  <span class="c1"># Just so normalization an sorting does not need to be repeated. Here we could later put in some checks</span>
-    <span class="n">sp_val</span><span class="p">,</span> <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
-    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">sp_vecs</span><span class="p">[:,</span> <span class="n">np</span><span class="o">.</span><span class="n">argsort</span><span class="p">(</span><span class="n">sp_val</span><span class="p">)[</span><span class="o">-</span><span class="n">i</span><span class="p">]]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">sp_vecs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)]</span>
-    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">v</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">v</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">G0</span> <span class="o">@</span> <span class="n">v</span><span class="p">))</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">sp_vecs</span><span class="p">]</span>
-    <span class="k">return</span> <span class="n">sp_vecs</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">   0</span></a><span class="kn">import</span> <span class="nn">warnings</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">   1</span></a><span class="kn">from</span> <span class="nn">itertools</span> <span class="kn">import</span> <span class="n">permutations</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">   2</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">   3</span></a><span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">   4</span></a><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">   5</span></a><span class="kn">import</span> <span class="nn">scipy.linalg</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">   6</span></a><span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">reweight</span><span class="p">,</span> <span class="n">correlate</span><span class="p">,</span> <span class="n">CObs</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">   7</span></a><span class="kn">from</span> <span class="nn">.misc</span> <span class="kn">import</span> <span class="n">dump_object</span><span class="p">,</span> <span class="n">_assert_equal_properties</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">   8</span></a><span class="kn">from</span> <span class="nn">.fits</span> <span class="kn">import</span> <span class="n">least_squares</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">   9</span></a><span class="kn">from</span> <span class="nn">.roots</span> <span class="kn">import</span> <span class="n">find_root</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos">  10</span></a>
+</span><span id="L-11"><a href="#L-11"><span class="linenos">  11</span></a>
+</span><span id="L-12"><a href="#L-12"><span class="linenos">  12</span></a><span class="k">class</span> <span class="nc">Corr</span><span class="p">:</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos">  13</span></a>    <span class="sd">&quot;&quot;&quot;The class for a correlator (time dependent sequence of pe.Obs).</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos">  14</span></a>
+</span><span id="L-15"><a href="#L-15"><span class="linenos">  15</span></a><span class="sd">    Everything, this class does, can be achieved using lists or arrays of Obs.</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos">  16</span></a><span class="sd">    But it is simply more convenient to have a dedicated object for correlators.</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos">  17</span></a><span class="sd">    One often wants to add or multiply correlators of the same length at every timeslice and it is inconvenient</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos">  18</span></a><span class="sd">    to iterate over all timeslices for every operation. This is especially true, when dealing with matrices.</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos">  19</span></a>
+</span><span id="L-20"><a href="#L-20"><span class="linenos">  20</span></a><span class="sd">    The correlator can have two types of content: An Obs at every timeslice OR a GEVP</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos">  21</span></a><span class="sd">    matrix at every timeslice. Other dependency (eg. spatial) are not supported.</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos">  22</span></a>
+</span><span id="L-23"><a href="#L-23"><span class="linenos">  23</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos">  24</span></a>
+</span><span id="L-25"><a href="#L-25"><span class="linenos">  25</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data_input</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">prange</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos">  26</span></a>        <span class="sd">&quot;&quot;&quot; Initialize a Corr object.</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos">  27</span></a>
+</span><span id="L-28"><a href="#L-28"><span class="linenos">  28</span></a><span class="sd">        Parameters</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos">  29</span></a><span class="sd">        ----------</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos">  30</span></a><span class="sd">        data_input : list or array</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos">  31</span></a><span class="sd">            list of Obs or list of arrays of Obs or array of Corrs</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos">  32</span></a><span class="sd">        padding : list, optional</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos">  33</span></a><span class="sd">            List with two entries where the first labels the padding</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos">  34</span></a><span class="sd">            at the front of the correlator and the second the padding</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos">  35</span></a><span class="sd">            at the back.</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos">  36</span></a><span class="sd">        prange : list, optional</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos">  37</span></a><span class="sd">            List containing the first and last timeslice of the plateau</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos">  38</span></a><span class="sd">            region indentified for this correlator.</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos">  39</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos">  40</span></a>
+</span><span id="L-41"><a href="#L-41"><span class="linenos">  41</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos">  42</span></a>
+</span><span id="L-43"><a href="#L-43"><span class="linenos">  43</span></a>            <span class="c1"># This only works, if the array fulfills the conditions below</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos">  44</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos">  45</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Incompatible array shape&quot;</span><span class="p">)</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos">  46</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos">  47</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;If the input is an array, its elements must be of type pe.Corr&quot;</span><span class="p">)</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos">  48</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos">  49</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only construct matrix correlator from single valued correlators&quot;</span><span class="p">)</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos">  50</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos">  51</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All input Correlators must be defined over the same timeslices.&quot;</span><span class="p">)</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos">  52</span></a>
+</span><span id="L-53"><a href="#L-53"><span class="linenos">  53</span></a>            <span class="n">T</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos">  54</span></a>            <span class="n">N</span> <span class="o">=</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos">  55</span></a>            <span class="n">input_as_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos">  56</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos">  57</span></a>                <span class="k">if</span> <span class="nb">any</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos">  58</span></a>                    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos">  59</span></a>                        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Input ill-defined at different timeslices. Conversion leads to data loss!&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos">  60</span></a>                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos">  61</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos">  62</span></a>                    <span class="n">array_at_timeslace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos">  63</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos">  64</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos">  65</span></a>                            <span class="n">array_at_timeslace</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">][</span><span class="n">t</span><span class="p">]</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos">  66</span></a>                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array_at_timeslace</span><span class="p">)</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos">  67</span></a>            <span class="n">data_input</span> <span class="o">=</span> <span class="n">input_as_list</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos">  68</span></a>
+</span><span id="L-69"><a href="#L-69"><span class="linenos">  69</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos">  70</span></a>
+</span><span id="L-71"><a href="#L-71"><span class="linenos">  71</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos">  72</span></a>                <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">data_input</span><span class="p">)</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos">  73</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos">  74</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos">  75</span></a>                <span class="n">_assert_equal_properties</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data_input</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos">  76</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos">  77</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos">  78</span></a>
+</span><span id="L-79"><a href="#L-79"><span class="linenos">  79</span></a>            <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">])</span> <span class="ow">and</span> <span class="nb">any</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos">  80</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="n">data_input</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos">  81</span></a>                <span class="n">noNull</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)]</span>  <span class="c1"># To check if the matrices are correct for all undefined elements</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos">  82</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos">  83</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos">  84</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Smearing matrices are not NxN&quot;</span><span class="p">)</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos">  85</span></a>                <span class="k">if</span> <span class="p">(</span><span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">noNull</span><span class="p">])):</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos">  86</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Items in data_input are not of identical shape.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noNull</span><span class="p">))</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos">  87</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos">  88</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;data_input contains item of wrong type&quot;</span><span class="p">)</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos">  89</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos">  90</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Data input was not given as list or correct array&quot;</span><span class="p">)</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos">  91</span></a>
+</span><span id="L-92"><a href="#L-92"><span class="linenos">  92</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos">  93</span></a>
+</span><span id="L-94"><a href="#L-94"><span class="linenos">  94</span></a>        <span class="c1"># An undefined timeslice is represented by the None object</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos">  95</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">+</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos">  96</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos">  97</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos">  98</span></a>
+</span><span id="L-99"><a href="#L-99"><span class="linenos">  99</span></a>    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos"> 100</span></a>        <span class="sd">&quot;&quot;&quot;Return the content of timeslice idx&quot;&quot;&quot;</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos"> 101</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos"> 102</span></a>            <span class="k">return</span> <span class="kc">None</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos"> 103</span></a>        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos"> 104</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos"> 105</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos"> 106</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos"> 107</span></a>
+</span><span id="L-108"><a href="#L-108"><span class="linenos"> 108</span></a>    <span class="nd">@property</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos"> 109</span></a>    <span class="k">def</span> <span class="nf">reweighted</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos"> 110</span></a>        <span class="n">bool_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">reweighted</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]])</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos"> 111</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos"> 112</span></a>            <span class="k">return</span> <span class="kc">True</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos"> 113</span></a>        <span class="k">elif</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos"> 114</span></a>            <span class="k">return</span> <span class="kc">False</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos"> 115</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos"> 116</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Reweighting status of correlator corrupted.&quot;</span><span class="p">)</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos"> 117</span></a>
+</span><span id="L-118"><a href="#L-118"><span class="linenos"> 118</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos"> 119</span></a>        <span class="sd">&quot;&quot;&quot;Apply the gamma method to the content of the Corr.&quot;&quot;&quot;</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos"> 120</span></a>        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos"> 121</span></a>            <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos"> 122</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos"> 123</span></a>                    <span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos"> 124</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos"> 125</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos"> 126</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos"> 127</span></a>                            <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos"> 128</span></a>
+</span><span id="L-129"><a href="#L-129"><span class="linenos"> 129</span></a>    <span class="k">def</span> <span class="nf">projected</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">vector_l</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vector_r</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos"> 130</span></a>        <span class="sd">&quot;&quot;&quot;We need to project the Correlator with a Vector to get a single value at each timeslice.</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos"> 131</span></a>
+</span><span id="L-132"><a href="#L-132"><span class="linenos"> 132</span></a><span class="sd">        The method can use one or two vectors.</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos"> 133</span></a><span class="sd">        If two are specified it returns v1@G@v2 (the order might be very important.)</span>
+</span><span id="L-134"><a href="#L-134"><span class="linenos"> 134</span></a><span class="sd">        By default it will return the lowest source, which usually means unsmeared-unsmeared (0,0), but it does not have to</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos"> 135</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos"> 136</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos"> 137</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to project a Corr, that already has N=1.&quot;</span><span class="p">)</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos"> 138</span></a>
+</span><span id="L-139"><a href="#L-139"><span class="linenos"> 139</span></a>        <span class="k">if</span> <span class="n">vector_l</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos"> 140</span></a>            <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">])</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos"> 141</span></a>        <span class="k">elif</span><span class="p">(</span><span class="n">vector_r</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos"> 142</span></a>            <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos"> 143</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos"> 144</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_l</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos"> 145</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos"> 146</span></a>            <span class="n">vector_r</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_r</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos"> 147</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos"> 148</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_r</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="L-149"><a href="#L-149"><span class="linenos"> 149</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos"> 150</span></a>            <span class="n">vector_l</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_l</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-151"><a href="#L-151"><span class="linenos"> 151</span></a>
+</span><span id="L-152"><a href="#L-152"><span class="linenos"> 152</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos"> 153</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">vector_l</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">vector_r</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,):</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos"> 154</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Vectors are of wrong shape!&quot;</span><span class="p">)</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos"> 155</span></a>            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos"> 156</span></a>                <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">)),</span> <span class="n">vector_r</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">)</span>
+</span><span id="L-157"><a href="#L-157"><span class="linenos"> 157</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">item</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos"> 158</span></a>
+</span><span id="L-159"><a href="#L-159"><span class="linenos"> 159</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-160"><a href="#L-160"><span class="linenos"> 160</span></a>            <span class="c1"># There are no checks here yet. There are so many possible scenarios, where this can go wrong.</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos"> 161</span></a>            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos"> 162</span></a>                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-163"><a href="#L-163"><span class="linenos"> 163</span></a>                    <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">])),</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos"> 164</span></a>
+</span><span id="L-165"><a href="#L-165"><span class="linenos"> 165</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]])</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)]</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos"> 166</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos"> 167</span></a>
+</span><span id="L-168"><a href="#L-168"><span class="linenos"> 168</span></a>    <span class="k">def</span> <span class="nf">item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">):</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos"> 169</span></a>        <span class="sd">&quot;&quot;&quot;Picks the element [i,j] from every matrix and returns a correlator containing one Obs per timeslice.</span>
+</span><span id="L-170"><a href="#L-170"><span class="linenos"> 170</span></a>
+</span><span id="L-171"><a href="#L-171"><span class="linenos"> 171</span></a><span class="sd">        Parameters</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos"> 172</span></a><span class="sd">        ----------</span>
+</span><span id="L-173"><a href="#L-173"><span class="linenos"> 173</span></a><span class="sd">        i : int</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos"> 174</span></a><span class="sd">            First index to be picked.</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos"> 175</span></a><span class="sd">        j : int</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos"> 176</span></a><span class="sd">            Second index to be picked.</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos"> 177</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos"> 178</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos"> 179</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to pick item from projected Corr&quot;</span><span class="p">)</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos"> 180</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos"> 181</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos"> 182</span></a>
+</span><span id="L-183"><a href="#L-183"><span class="linenos"> 183</span></a>    <span class="k">def</span> <span class="nf">plottable</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos"> 184</span></a>        <span class="sd">&quot;&quot;&quot;Outputs the correlator in a plotable format.</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos"> 185</span></a>
+</span><span id="L-186"><a href="#L-186"><span class="linenos"> 186</span></a><span class="sd">        Outputs three lists containing the timeslice index, the value on each</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos"> 187</span></a><span class="sd">        timeslice and the error on each timeslice.</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos"> 188</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos"> 189</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos"> 190</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only make Corr[N=1] plottable&quot;</span><span class="p">)</span>
+</span><span id="L-191"><a href="#L-191"><span class="linenos"> 191</span></a>        <span class="n">x_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos"> 192</span></a>        <span class="n">y_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos"> 193</span></a>        <span class="n">y_err_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos"> 194</span></a>
+</span><span id="L-195"><a href="#L-195"><span class="linenos"> 195</span></a>        <span class="k">return</span> <span class="n">x_list</span><span class="p">,</span> <span class="n">y_list</span><span class="p">,</span> <span class="n">y_err_list</span>
+</span><span id="L-196"><a href="#L-196"><span class="linenos"> 196</span></a>
+</span><span id="L-197"><a href="#L-197"><span class="linenos"> 197</span></a>    <span class="k">def</span> <span class="nf">symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos"> 198</span></a>        <span class="sd">&quot;&quot;&quot; Symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos"> 199</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos"> 200</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos"> 201</span></a>
+</span><span id="L-202"><a href="#L-202"><span class="linenos"> 202</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">))</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos"> 203</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos"> 204</span></a>
+</span><span id="L-205"><a href="#L-205"><span class="linenos"> 205</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos"> 206</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos"> 207</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos"> 208</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos"> 209</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos"> 210</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos"> 211</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos"> 212</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos"> 213</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos"> 214</span></a>
+</span><span id="L-215"><a href="#L-215"><span class="linenos"> 215</span></a>    <span class="k">def</span> <span class="nf">anti_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos"> 216</span></a>        <span class="sd">&quot;&quot;&quot;Anti-symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos"> 217</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos"> 218</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos"> 219</span></a>
+</span><span id="L-220"><a href="#L-220"><span class="linenos"> 220</span></a>        <span class="n">test</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos"> 221</span></a>        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos"> 222</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]):</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos"> 223</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be anti-symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos"> 224</span></a>
+</span><span id="L-225"><a href="#L-225"><span class="linenos"> 225</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos"> 226</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos"> 227</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos"> 228</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos"> 229</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos"> 230</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
+</span><span id="L-231"><a href="#L-231"><span class="linenos"> 231</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos"> 232</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos"> 233</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos"> 234</span></a>
+</span><span id="L-235"><a href="#L-235"><span class="linenos"> 235</span></a>    <span class="k">def</span> <span class="nf">matrix_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos"> 236</span></a>        <span class="sd">&quot;&quot;&quot;Symmetrizes the correlator matrices on every timeslice.&quot;&quot;&quot;</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos"> 237</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-238"><a href="#L-238"><span class="linenos"> 238</span></a>            <span class="n">transposed</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">G</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">G</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">G</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos"> 239</span></a>            <span class="k">return</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">transposed</span><span class="p">)</span> <span class="o">+</span> <span class="bp">self</span><span class="p">)</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos"> 240</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos"> 241</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to symmetrize a correlator matrix, that already has N=1.&quot;</span><span class="p">)</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos"> 242</span></a>
+</span><span id="L-243"><a href="#L-243"><span class="linenos"> 243</span></a>    <span class="k">def</span> <span class="nf">GEVP</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos"> 244</span></a>        <span class="sd">&quot;&quot;&quot;Solve the general eigenvalue problem on the current correlator</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos"> 245</span></a>
+</span><span id="L-246"><a href="#L-246"><span class="linenos"> 246</span></a><span class="sd">        Parameters</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos"> 247</span></a><span class="sd">        ----------</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos"> 248</span></a><span class="sd">        t0 : int</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos"> 249</span></a><span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos"> 250</span></a><span class="sd">        ts : int</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos"> 251</span></a><span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos"> 252</span></a><span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos"> 253</span></a><span class="sd">        state : int</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos"> 254</span></a><span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos"> 255</span></a><span class="sd">        sorted_list : string</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos"> 256</span></a><span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos"> 257</span></a><span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
+</span><span id="L-258"><a href="#L-258"><span class="linenos"> 258</span></a><span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos"> 259</span></a><span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos"> 260</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos"> 261</span></a>        <span class="k">if</span> <span class="n">sorted_list</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos"> 262</span></a>            <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos"> 263</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required if sorted_list=None&quot;</span><span class="p">)</span>
+</span><span id="L-264"><a href="#L-264"><span class="linenos"> 264</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">ts</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos"> 265</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr not defined at t0/ts&quot;</span><span class="p">)</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos"> 266</span></a>            <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos"> 267</span></a>            <span class="n">symmetric_corr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">matrix_symmetric</span><span class="p">()</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos"> 268</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos"> 269</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-270"><a href="#L-270"><span class="linenos"> 270</span></a>                    <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos"> 271</span></a>                    <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="p">[</span><span class="n">ts</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos"> 272</span></a>
+</span><span id="L-273"><a href="#L-273"><span class="linenos"> 273</span></a>            <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos"> 274</span></a>            <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
+</span><span id="L-275"><a href="#L-275"><span class="linenos"> 275</span></a>            <span class="k">return</span> <span class="n">sp_vec</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos"> 276</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos"> 277</span></a>
+</span><span id="L-278"><a href="#L-278"><span class="linenos"> 278</span></a>            <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos"> 279</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos"> 280</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos"> 281</span></a>                    <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
+</span><span id="L-282"><a href="#L-282"><span class="linenos"> 282</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos"> 283</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-284"><a href="#L-284"><span class="linenos"> 284</span></a>                            <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-285"><a href="#L-285"><span class="linenos"> 285</span></a>                            <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-286"><a href="#L-286"><span class="linenos"> 286</span></a>
+</span><span id="L-287"><a href="#L-287"><span class="linenos"> 287</span></a>                    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos"> 288</span></a>                    <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvalue&quot;</span><span class="p">:</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos"> 289</span></a>                        <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos"> 290</span></a>                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vec</span><span class="p">)</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos"> 291</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-292"><a href="#L-292"><span class="linenos"> 292</span></a>                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vecs</span><span class="p">)</span>
+</span><span id="L-293"><a href="#L-293"><span class="linenos"> 293</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos"> 294</span></a>                    <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-295"><a href="#L-295"><span class="linenos"> 295</span></a>            <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvector&quot;</span><span class="p">:</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos"> 296</span></a>                <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos"> 297</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required for the Eigenvector sorting method.&quot;</span><span class="p">)</span>
+</span><span id="L-298"><a href="#L-298"><span class="linenos"> 298</span></a>                <span class="n">all_vecs</span> <span class="o">=</span> <span class="n">_sort_vectors</span><span class="p">(</span><span class="n">all_vecs</span><span class="p">,</span> <span class="n">ts</span><span class="p">)</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos"> 299</span></a>                <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span><span class="p">[</span><span class="n">state</span><span class="p">]</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">all_vecs</span><span class="p">]</span>
+</span><span id="L-300"><a href="#L-300"><span class="linenos"> 300</span></a>
+</span><span id="L-301"><a href="#L-301"><span class="linenos"> 301</span></a>        <span class="k">return</span> <span class="n">all_vecs</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos"> 302</span></a>
+</span><span id="L-303"><a href="#L-303"><span class="linenos"> 303</span></a>    <span class="k">def</span> <span class="nf">Eigenvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos"> 304</span></a>        <span class="sd">&quot;&quot;&quot;Determines the eigenvalue of the GEVP by solving and projecting the correlator</span>
+</span><span id="L-305"><a href="#L-305"><span class="linenos"> 305</span></a>
+</span><span id="L-306"><a href="#L-306"><span class="linenos"> 306</span></a><span class="sd">        Parameters</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos"> 307</span></a><span class="sd">        ----------</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos"> 308</span></a><span class="sd">        t0 : int</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos"> 309</span></a><span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos"> 310</span></a><span class="sd">        ts : int</span>
+</span><span id="L-311"><a href="#L-311"><span class="linenos"> 311</span></a><span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos"> 312</span></a><span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
+</span><span id="L-313"><a href="#L-313"><span class="linenos"> 313</span></a><span class="sd">        state : int</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos"> 314</span></a><span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos"> 315</span></a><span class="sd">        sorted_list : string</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos"> 316</span></a><span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
+</span><span id="L-317"><a href="#L-317"><span class="linenos"> 317</span></a><span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos"> 318</span></a><span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
+</span><span id="L-319"><a href="#L-319"><span class="linenos"> 319</span></a><span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
+</span><span id="L-320"><a href="#L-320"><span class="linenos"> 320</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-321"><a href="#L-321"><span class="linenos"> 321</span></a>        <span class="n">vec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GEVP</span><span class="p">(</span><span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="n">ts</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="n">sorted_list</span><span class="p">)</span>
+</span><span id="L-322"><a href="#L-322"><span class="linenos"> 322</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">projected</span><span class="p">(</span><span class="n">vec</span><span class="p">)</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos"> 323</span></a>
+</span><span id="L-324"><a href="#L-324"><span class="linenos"> 324</span></a>    <span class="k">def</span> <span class="nf">Hankel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">,</span> <span class="n">periodic</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-325"><a href="#L-325"><span class="linenos"> 325</span></a>        <span class="sd">&quot;&quot;&quot;Constructs an NxN Hankel matrix</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos"> 326</span></a>
+</span><span id="L-327"><a href="#L-327"><span class="linenos"> 327</span></a><span class="sd">        C(t) c(t+1) ... c(t+n-1)</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos"> 328</span></a><span class="sd">        C(t+1) c(t+2) ... c(t+n)</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos"> 329</span></a><span class="sd">        .................</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos"> 330</span></a><span class="sd">        C(t+(n-1)) c(t+n) ... c(t+2(n-1))</span>
+</span><span id="L-331"><a href="#L-331"><span class="linenos"> 331</span></a>
+</span><span id="L-332"><a href="#L-332"><span class="linenos"> 332</span></a><span class="sd">        Parameters</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos"> 333</span></a><span class="sd">        ----------</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos"> 334</span></a><span class="sd">        N : int</span>
+</span><span id="L-335"><a href="#L-335"><span class="linenos"> 335</span></a><span class="sd">            Dimension of the Hankel matrix</span>
+</span><span id="L-336"><a href="#L-336"><span class="linenos"> 336</span></a><span class="sd">        periodic : bool, optional</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos"> 337</span></a><span class="sd">            determines whether the matrix is extended periodically</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos"> 338</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-339"><a href="#L-339"><span class="linenos"> 339</span></a>
+</span><span id="L-340"><a href="#L-340"><span class="linenos"> 340</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos"> 341</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multi-operator Prony not implemented!&quot;</span><span class="p">)</span>
+</span><span id="L-342"><a href="#L-342"><span class="linenos"> 342</span></a>
+</span><span id="L-343"><a href="#L-343"><span class="linenos"> 343</span></a>        <span class="n">array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
+</span><span id="L-344"><a href="#L-344"><span class="linenos"> 344</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos"> 345</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos"> 346</span></a>            <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
+</span><span id="L-347"><a href="#L-347"><span class="linenos"> 347</span></a>
+</span><span id="L-348"><a href="#L-348"><span class="linenos"> 348</span></a>        <span class="k">def</span> <span class="nf">wrap</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos"> 349</span></a>            <span class="k">while</span> <span class="n">i</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos"> 350</span></a>                <span class="n">i</span> <span class="o">-=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-351"><a href="#L-351"><span class="linenos"> 351</span></a>            <span class="k">return</span> <span class="n">i</span>
+</span><span id="L-352"><a href="#L-352"><span class="linenos"> 352</span></a>
+</span><span id="L-353"><a href="#L-353"><span class="linenos"> 353</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-354"><a href="#L-354"><span class="linenos"> 354</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos"> 355</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-356"><a href="#L-356"><span class="linenos"> 356</span></a>                    <span class="k">if</span> <span class="n">periodic</span><span class="p">:</span>
+</span><span id="L-357"><a href="#L-357"><span class="linenos"> 357</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">wrap</span><span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-358"><a href="#L-358"><span class="linenos"> 358</span></a>                    <span class="k">elif</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="L-359"><a href="#L-359"><span class="linenos"> 359</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-360"><a href="#L-360"><span class="linenos"> 360</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-361"><a href="#L-361"><span class="linenos"> 361</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-362"><a href="#L-362"><span class="linenos"> 362</span></a>
+</span><span id="L-363"><a href="#L-363"><span class="linenos"> 363</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="L-364"><a href="#L-364"><span class="linenos"> 364</span></a>
+</span><span id="L-365"><a href="#L-365"><span class="linenos"> 365</span></a>    <span class="k">def</span> <span class="nf">roll</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dt</span><span class="p">):</span>
+</span><span id="L-366"><a href="#L-366"><span class="linenos"> 366</span></a>        <span class="sd">&quot;&quot;&quot;Periodically shift the correlator by dt timeslices</span>
+</span><span id="L-367"><a href="#L-367"><span class="linenos"> 367</span></a>
+</span><span id="L-368"><a href="#L-368"><span class="linenos"> 368</span></a><span class="sd">        Parameters</span>
+</span><span id="L-369"><a href="#L-369"><span class="linenos"> 369</span></a><span class="sd">        ----------</span>
+</span><span id="L-370"><a href="#L-370"><span class="linenos"> 370</span></a><span class="sd">        dt : int</span>
+</span><span id="L-371"><a href="#L-371"><span class="linenos"> 371</span></a><span class="sd">            number of timeslices</span>
+</span><span id="L-372"><a href="#L-372"><span class="linenos"> 372</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-373"><a href="#L-373"><span class="linenos"> 373</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">roll</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">),</span> <span class="n">dt</span><span class="p">)))</span>
+</span><span id="L-374"><a href="#L-374"><span class="linenos"> 374</span></a>
+</span><span id="L-375"><a href="#L-375"><span class="linenos"> 375</span></a>    <span class="k">def</span> <span class="nf">reverse</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-376"><a href="#L-376"><span class="linenos"> 376</span></a>        <span class="sd">&quot;&quot;&quot;Reverse the time ordering of the Corr&quot;&quot;&quot;</span>
+</span><span id="L-377"><a href="#L-377"><span class="linenos"> 377</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[::</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-378"><a href="#L-378"><span class="linenos"> 378</span></a>
+</span><span id="L-379"><a href="#L-379"><span class="linenos"> 379</span></a>    <span class="k">def</span> <span class="nf">thin</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
+</span><span id="L-380"><a href="#L-380"><span class="linenos"> 380</span></a>        <span class="sd">&quot;&quot;&quot;Thin out a correlator to suppress correlations</span>
+</span><span id="L-381"><a href="#L-381"><span class="linenos"> 381</span></a>
+</span><span id="L-382"><a href="#L-382"><span class="linenos"> 382</span></a><span class="sd">        Parameters</span>
+</span><span id="L-383"><a href="#L-383"><span class="linenos"> 383</span></a><span class="sd">        ----------</span>
+</span><span id="L-384"><a href="#L-384"><span class="linenos"> 384</span></a><span class="sd">        spacing : int</span>
+</span><span id="L-385"><a href="#L-385"><span class="linenos"> 385</span></a><span class="sd">            Keep only every &#39;spacing&#39;th entry of the correlator</span>
+</span><span id="L-386"><a href="#L-386"><span class="linenos"> 386</span></a><span class="sd">        offset : int</span>
+</span><span id="L-387"><a href="#L-387"><span class="linenos"> 387</span></a><span class="sd">            Offset the equal spacing</span>
+</span><span id="L-388"><a href="#L-388"><span class="linenos"> 388</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-389"><a href="#L-389"><span class="linenos"> 389</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-390"><a href="#L-390"><span class="linenos"> 390</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-391"><a href="#L-391"><span class="linenos"> 391</span></a>            <span class="k">if</span> <span class="p">(</span><span class="n">offset</span> <span class="o">+</span> <span class="n">t</span><span class="p">)</span> <span class="o">%</span> <span class="n">spacing</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-392"><a href="#L-392"><span class="linenos"> 392</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-393"><a href="#L-393"><span class="linenos"> 393</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-394"><a href="#L-394"><span class="linenos"> 394</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="L-395"><a href="#L-395"><span class="linenos"> 395</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="L-396"><a href="#L-396"><span class="linenos"> 396</span></a>
+</span><span id="L-397"><a href="#L-397"><span class="linenos"> 397</span></a>    <span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">):</span>
+</span><span id="L-398"><a href="#L-398"><span class="linenos"> 398</span></a>        <span class="sd">&quot;&quot;&quot;Correlate the correlator with another correlator or Obs</span>
+</span><span id="L-399"><a href="#L-399"><span class="linenos"> 399</span></a>
+</span><span id="L-400"><a href="#L-400"><span class="linenos"> 400</span></a><span class="sd">        Parameters</span>
+</span><span id="L-401"><a href="#L-401"><span class="linenos"> 401</span></a><span class="sd">        ----------</span>
+</span><span id="L-402"><a href="#L-402"><span class="linenos"> 402</span></a><span class="sd">        partner : Obs or Corr</span>
+</span><span id="L-403"><a href="#L-403"><span class="linenos"> 403</span></a><span class="sd">            partner to correlate the correlator with.</span>
+</span><span id="L-404"><a href="#L-404"><span class="linenos"> 404</span></a><span class="sd">            Can either be an Obs which is correlated with all entries of the</span>
+</span><span id="L-405"><a href="#L-405"><span class="linenos"> 405</span></a><span class="sd">            correlator or a Corr of same length.</span>
+</span><span id="L-406"><a href="#L-406"><span class="linenos"> 406</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-407"><a href="#L-407"><span class="linenos"> 407</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-408"><a href="#L-408"><span class="linenos"> 408</span></a>        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
+</span><span id="L-409"><a href="#L-409"><span class="linenos"> 409</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-410"><a href="#L-410"><span class="linenos"> 410</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-411"><a href="#L-411"><span class="linenos"> 411</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-412"><a href="#L-412"><span class="linenos"> 412</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="L-413"><a href="#L-413"><span class="linenos"> 413</span></a>                    <span class="k">if</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-414"><a href="#L-414"><span class="linenos"> 414</span></a>                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-415"><a href="#L-415"><span class="linenos"> 415</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-416"><a href="#L-416"><span class="linenos"> 416</span></a>                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
+</span><span id="L-417"><a href="#L-417"><span class="linenos"> 417</span></a>                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>  <span class="c1"># Should this include CObs?</span>
+</span><span id="L-418"><a href="#L-418"><span class="linenos"> 418</span></a>                    <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
+</span><span id="L-419"><a href="#L-419"><span class="linenos"> 419</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-420"><a href="#L-420"><span class="linenos"> 420</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only correlate with an Obs or a Corr.&quot;</span><span class="p">)</span>
+</span><span id="L-421"><a href="#L-421"><span class="linenos"> 421</span></a>
+</span><span id="L-422"><a href="#L-422"><span class="linenos"> 422</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="L-423"><a href="#L-423"><span class="linenos"> 423</span></a>
+</span><span id="L-424"><a href="#L-424"><span class="linenos"> 424</span></a>    <span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">weight</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-425"><a href="#L-425"><span class="linenos"> 425</span></a>        <span class="sd">&quot;&quot;&quot;Reweight the correlator.</span>
+</span><span id="L-426"><a href="#L-426"><span class="linenos"> 426</span></a>
+</span><span id="L-427"><a href="#L-427"><span class="linenos"> 427</span></a><span class="sd">        Parameters</span>
+</span><span id="L-428"><a href="#L-428"><span class="linenos"> 428</span></a><span class="sd">        ----------</span>
+</span><span id="L-429"><a href="#L-429"><span class="linenos"> 429</span></a><span class="sd">        weight : Obs</span>
+</span><span id="L-430"><a href="#L-430"><span class="linenos"> 430</span></a><span class="sd">            Reweighting factor. An Observable that has to be defined on a superset of the</span>
+</span><span id="L-431"><a href="#L-431"><span class="linenos"> 431</span></a><span class="sd">            configurations in obs[i].idl for all i.</span>
+</span><span id="L-432"><a href="#L-432"><span class="linenos"> 432</span></a><span class="sd">        all_configs : bool</span>
+</span><span id="L-433"><a href="#L-433"><span class="linenos"> 433</span></a><span class="sd">            if True, the reweighted observables are normalized by the average of</span>
+</span><span id="L-434"><a href="#L-434"><span class="linenos"> 434</span></a><span class="sd">            the reweighting factor on all configurations in weight.idl and not</span>
+</span><span id="L-435"><a href="#L-435"><span class="linenos"> 435</span></a><span class="sd">            on the configurations in obs[i].idl.</span>
+</span><span id="L-436"><a href="#L-436"><span class="linenos"> 436</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-437"><a href="#L-437"><span class="linenos"> 437</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-438"><a href="#L-438"><span class="linenos"> 438</span></a>        <span class="k">for</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
+</span><span id="L-439"><a href="#L-439"><span class="linenos"> 439</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-440"><a href="#L-440"><span class="linenos"> 440</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-441"><a href="#L-441"><span class="linenos"> 441</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-442"><a href="#L-442"><span class="linenos"> 442</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">t_slice</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
+</span><span id="L-443"><a href="#L-443"><span class="linenos"> 443</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="L-444"><a href="#L-444"><span class="linenos"> 444</span></a>
+</span><span id="L-445"><a href="#L-445"><span class="linenos"> 445</span></a>    <span class="k">def</span> <span class="nf">T_symmetry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">,</span> <span class="n">parity</span><span class="o">=+</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="L-446"><a href="#L-446"><span class="linenos"> 446</span></a>        <span class="sd">&quot;&quot;&quot;Return the time symmetry average of the correlator and its partner</span>
+</span><span id="L-447"><a href="#L-447"><span class="linenos"> 447</span></a>
+</span><span id="L-448"><a href="#L-448"><span class="linenos"> 448</span></a><span class="sd">        Parameters</span>
+</span><span id="L-449"><a href="#L-449"><span class="linenos"> 449</span></a><span class="sd">        ----------</span>
+</span><span id="L-450"><a href="#L-450"><span class="linenos"> 450</span></a><span class="sd">        partner : Corr</span>
+</span><span id="L-451"><a href="#L-451"><span class="linenos"> 451</span></a><span class="sd">            Time symmetry partner of the Corr</span>
+</span><span id="L-452"><a href="#L-452"><span class="linenos"> 452</span></a><span class="sd">        partity : int</span>
+</span><span id="L-453"><a href="#L-453"><span class="linenos"> 453</span></a><span class="sd">            Parity quantum number of the correlator, can be +1 or -1</span>
+</span><span id="L-454"><a href="#L-454"><span class="linenos"> 454</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-455"><a href="#L-455"><span class="linenos"> 455</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="L-456"><a href="#L-456"><span class="linenos"> 456</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;T partner has to be a Corr object.&quot;</span><span class="p">)</span>
+</span><span id="L-457"><a href="#L-457"><span class="linenos"> 457</span></a>        <span class="k">if</span> <span class="n">parity</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="o">+</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="L-458"><a href="#L-458"><span class="linenos"> 458</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Parity has to be +1 or -1.&quot;</span><span class="p">)</span>
+</span><span id="L-459"><a href="#L-459"><span class="linenos"> 459</span></a>        <span class="n">T_partner</span> <span class="o">=</span> <span class="n">parity</span> <span class="o">*</span> <span class="n">partner</span><span class="o">.</span><span class="n">reverse</span><span class="p">()</span>
+</span><span id="L-460"><a href="#L-460"><span class="linenos"> 460</span></a>
+</span><span id="L-461"><a href="#L-461"><span class="linenos"> 461</span></a>        <span class="n">t_slices</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-462"><a href="#L-462"><span class="linenos"> 462</span></a>        <span class="n">test</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">T_partner</span><span class="p">)</span>
+</span><span id="L-463"><a href="#L-463"><span class="linenos"> 463</span></a>        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="L-464"><a href="#L-464"><span class="linenos"> 464</span></a>        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
+</span><span id="L-465"><a href="#L-465"><span class="linenos"> 465</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-466"><a href="#L-466"><span class="linenos"> 466</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">t_slice</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">5</span><span class="p">):</span>
+</span><span id="L-467"><a href="#L-467"><span class="linenos"> 467</span></a>                    <span class="n">t_slices</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span>
+</span><span id="L-468"><a href="#L-468"><span class="linenos"> 468</span></a>        <span class="k">if</span> <span class="n">t_slices</span><span class="p">:</span>
+</span><span id="L-469"><a href="#L-469"><span class="linenos"> 469</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;T symmetry partners do not agree within 5 sigma on time slices &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">t_slices</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-470"><a href="#L-470"><span class="linenos"> 470</span></a>
+</span><span id="L-471"><a href="#L-471"><span class="linenos"> 471</span></a>        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">+</span> <span class="n">T_partner</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
+</span><span id="L-472"><a href="#L-472"><span class="linenos"> 472</span></a>
+</span><span id="L-473"><a href="#L-473"><span class="linenos"> 473</span></a>    <span class="k">def</span> <span class="nf">deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
+</span><span id="L-474"><a href="#L-474"><span class="linenos"> 474</span></a>        <span class="sd">&quot;&quot;&quot;Return the first derivative of the correlator with respect to x0.</span>
+</span><span id="L-475"><a href="#L-475"><span class="linenos"> 475</span></a>
+</span><span id="L-476"><a href="#L-476"><span class="linenos"> 476</span></a><span class="sd">        Parameters</span>
+</span><span id="L-477"><a href="#L-477"><span class="linenos"> 477</span></a><span class="sd">        ----------</span>
+</span><span id="L-478"><a href="#L-478"><span class="linenos"> 478</span></a><span class="sd">        variant : str</span>
+</span><span id="L-479"><a href="#L-479"><span class="linenos"> 479</span></a><span class="sd">            decides which definition of the finite differences derivative is used.</span>
+</span><span id="L-480"><a href="#L-480"><span class="linenos"> 480</span></a><span class="sd">            Available choice: symmetric, forward, backward, improved, default: symmetric</span>
+</span><span id="L-481"><a href="#L-481"><span class="linenos"> 481</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-482"><a href="#L-482"><span class="linenos"> 482</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
+</span><span id="L-483"><a href="#L-483"><span class="linenos"> 483</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-484"><a href="#L-484"><span class="linenos"> 484</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-485"><a href="#L-485"><span class="linenos"> 485</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-486"><a href="#L-486"><span class="linenos"> 486</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-487"><a href="#L-487"><span class="linenos"> 487</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-488"><a href="#L-488"><span class="linenos"> 488</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-489"><a href="#L-489"><span class="linenos"> 489</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-490"><a href="#L-490"><span class="linenos"> 490</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="L-491"><a href="#L-491"><span class="linenos"> 491</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="L-492"><a href="#L-492"><span class="linenos"> 492</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;forward&quot;</span><span class="p">:</span>
+</span><span id="L-493"><a href="#L-493"><span class="linenos"> 493</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-494"><a href="#L-494"><span class="linenos"> 494</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-495"><a href="#L-495"><span class="linenos"> 495</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-496"><a href="#L-496"><span class="linenos"> 496</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-497"><a href="#L-497"><span class="linenos"> 497</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-498"><a href="#L-498"><span class="linenos"> 498</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="L-499"><a href="#L-499"><span class="linenos"> 499</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-500"><a href="#L-500"><span class="linenos"> 500</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="L-501"><a href="#L-501"><span class="linenos"> 501</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="L-502"><a href="#L-502"><span class="linenos"> 502</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;backward&quot;</span><span class="p">:</span>
+</span><span id="L-503"><a href="#L-503"><span class="linenos"> 503</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-504"><a href="#L-504"><span class="linenos"> 504</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-505"><a href="#L-505"><span class="linenos"> 505</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-506"><a href="#L-506"><span class="linenos"> 506</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-507"><a href="#L-507"><span class="linenos"> 507</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-508"><a href="#L-508"><span class="linenos"> 508</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="L-509"><a href="#L-509"><span class="linenos"> 509</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-510"><a href="#L-510"><span class="linenos"> 510</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="L-511"><a href="#L-511"><span class="linenos"> 511</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">])</span>
+</span><span id="L-512"><a href="#L-512"><span class="linenos"> 512</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
+</span><span id="L-513"><a href="#L-513"><span class="linenos"> 513</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-514"><a href="#L-514"><span class="linenos"> 514</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="L-515"><a href="#L-515"><span class="linenos"> 515</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-516"><a href="#L-516"><span class="linenos"> 516</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-517"><a href="#L-517"><span class="linenos"> 517</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-518"><a href="#L-518"><span class="linenos"> 518</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]))</span>
+</span><span id="L-519"><a href="#L-519"><span class="linenos"> 519</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-520"><a href="#L-520"><span class="linenos"> 520</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="L-521"><a href="#L-521"><span class="linenos"> 521</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="L-522"><a href="#L-522"><span class="linenos"> 522</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-523"><a href="#L-523"><span class="linenos"> 523</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
+</span><span id="L-524"><a href="#L-524"><span class="linenos"> 524</span></a>
+</span><span id="L-525"><a href="#L-525"><span class="linenos"> 525</span></a>    <span class="k">def</span> <span class="nf">second_deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
+</span><span id="L-526"><a href="#L-526"><span class="linenos"> 526</span></a>        <span class="sd">&quot;&quot;&quot;Return the second derivative of the correlator with respect to x0.</span>
+</span><span id="L-527"><a href="#L-527"><span class="linenos"> 527</span></a>
+</span><span id="L-528"><a href="#L-528"><span class="linenos"> 528</span></a><span class="sd">        Parameters</span>
+</span><span id="L-529"><a href="#L-529"><span class="linenos"> 529</span></a><span class="sd">        ----------</span>
+</span><span id="L-530"><a href="#L-530"><span class="linenos"> 530</span></a><span class="sd">        variant : str</span>
+</span><span id="L-531"><a href="#L-531"><span class="linenos"> 531</span></a><span class="sd">            decides which definition of the finite differences derivative is used.</span>
+</span><span id="L-532"><a href="#L-532"><span class="linenos"> 532</span></a><span class="sd">            Available choice: symmetric, improved, default: symmetric</span>
+</span><span id="L-533"><a href="#L-533"><span class="linenos"> 533</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-534"><a href="#L-534"><span class="linenos"> 534</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
+</span><span id="L-535"><a href="#L-535"><span class="linenos"> 535</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-536"><a href="#L-536"><span class="linenos"> 536</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-537"><a href="#L-537"><span class="linenos"> 537</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-538"><a href="#L-538"><span class="linenos"> 538</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-539"><a href="#L-539"><span class="linenos"> 539</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-540"><a href="#L-540"><span class="linenos"> 540</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-541"><a href="#L-541"><span class="linenos"> 541</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-542"><a href="#L-542"><span class="linenos"> 542</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="L-543"><a href="#L-543"><span class="linenos"> 543</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="L-544"><a href="#L-544"><span class="linenos"> 544</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
+</span><span id="L-545"><a href="#L-545"><span class="linenos"> 545</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-546"><a href="#L-546"><span class="linenos"> 546</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="L-547"><a href="#L-547"><span class="linenos"> 547</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-548"><a href="#L-548"><span class="linenos"> 548</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-549"><a href="#L-549"><span class="linenos"> 549</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-550"><a href="#L-550"><span class="linenos"> 550</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">30</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]))</span>
+</span><span id="L-551"><a href="#L-551"><span class="linenos"> 551</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-552"><a href="#L-552"><span class="linenos"> 552</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="L-553"><a href="#L-553"><span class="linenos"> 553</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="L-554"><a href="#L-554"><span class="linenos"> 554</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-555"><a href="#L-555"><span class="linenos"> 555</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
+</span><span id="L-556"><a href="#L-556"><span class="linenos"> 556</span></a>
+</span><span id="L-557"><a href="#L-557"><span class="linenos"> 557</span></a>    <span class="k">def</span> <span class="nf">m_eff</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s1">&#39;log&#39;</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
+</span><span id="L-558"><a href="#L-558"><span class="linenos"> 558</span></a>        <span class="sd">&quot;&quot;&quot;Returns the effective mass of the correlator as correlator object</span>
+</span><span id="L-559"><a href="#L-559"><span class="linenos"> 559</span></a>
+</span><span id="L-560"><a href="#L-560"><span class="linenos"> 560</span></a><span class="sd">        Parameters</span>
+</span><span id="L-561"><a href="#L-561"><span class="linenos"> 561</span></a><span class="sd">        ----------</span>
+</span><span id="L-562"><a href="#L-562"><span class="linenos"> 562</span></a><span class="sd">        variant : str</span>
+</span><span id="L-563"><a href="#L-563"><span class="linenos"> 563</span></a><span class="sd">            log : uses the standard effective mass log(C(t) / C(t+1))</span>
+</span><span id="L-564"><a href="#L-564"><span class="linenos"> 564</span></a><span class="sd">            cosh, periodic : Use periodicitiy of the correlator by solving C(t) / C(t+1) = cosh(m * (t - T/2)) / cosh(m * (t + 1 - T/2)) for m.</span>
+</span><span id="L-565"><a href="#L-565"><span class="linenos"> 565</span></a><span class="sd">            sinh : Use anti-periodicitiy of the correlator by solving C(t) / C(t+1) = sinh(m * (t - T/2)) / sinh(m * (t + 1 - T/2)) for m.</span>
+</span><span id="L-566"><a href="#L-566"><span class="linenos"> 566</span></a><span class="sd">            See, e.g., arXiv:1205.5380</span>
+</span><span id="L-567"><a href="#L-567"><span class="linenos"> 567</span></a><span class="sd">            arccosh : Uses the explicit form of the symmetrized correlator (not recommended)</span>
+</span><span id="L-568"><a href="#L-568"><span class="linenos"> 568</span></a><span class="sd">        guess : float</span>
+</span><span id="L-569"><a href="#L-569"><span class="linenos"> 569</span></a><span class="sd">            guess for the root finder, only relevant for the root variant</span>
+</span><span id="L-570"><a href="#L-570"><span class="linenos"> 570</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-571"><a href="#L-571"><span class="linenos"> 571</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-572"><a href="#L-572"><span class="linenos"> 572</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator must be projected before getting m_eff&#39;</span><span class="p">)</span>
+</span><span id="L-573"><a href="#L-573"><span class="linenos"> 573</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;log&#39;</span><span class="p">:</span>
+</span><span id="L-574"><a href="#L-574"><span class="linenos"> 574</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-575"><a href="#L-575"><span class="linenos"> 575</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-576"><a href="#L-576"><span class="linenos"> 576</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-577"><a href="#L-577"><span class="linenos"> 577</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-578"><a href="#L-578"><span class="linenos"> 578</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-579"><a href="#L-579"><span class="linenos"> 579</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="L-580"><a href="#L-580"><span class="linenos"> 580</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-581"><a href="#L-581"><span class="linenos"> 581</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="L-582"><a href="#L-582"><span class="linenos"> 582</span></a>
+</span><span id="L-583"><a href="#L-583"><span class="linenos"> 583</span></a>            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-584"><a href="#L-584"><span class="linenos"> 584</span></a>
+</span><span id="L-585"><a href="#L-585"><span class="linenos"> 585</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">,</span> <span class="s1">&#39;sinh&#39;</span><span class="p">]:</span>
+</span><span id="L-586"><a href="#L-586"><span class="linenos"> 586</span></a>            <span class="k">if</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">]:</span>
+</span><span id="L-587"><a href="#L-587"><span class="linenos"> 587</span></a>                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">cosh</span>
+</span><span id="L-588"><a href="#L-588"><span class="linenos"> 588</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-589"><a href="#L-589"><span class="linenos"> 589</span></a>                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sinh</span>
+</span><span id="L-590"><a href="#L-590"><span class="linenos"> 590</span></a>
+</span><span id="L-591"><a href="#L-591"><span class="linenos"> 591</span></a>            <span class="k">def</span> <span class="nf">root_function</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
+</span><span id="L-592"><a href="#L-592"><span class="linenos"> 592</span></a>                <span class="k">return</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">/</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">-</span> <span class="n">d</span>
+</span><span id="L-593"><a href="#L-593"><span class="linenos"> 593</span></a>
+</span><span id="L-594"><a href="#L-594"><span class="linenos"> 594</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-595"><a href="#L-595"><span class="linenos"> 595</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-596"><a href="#L-596"><span class="linenos"> 596</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-597"><a href="#L-597"><span class="linenos"> 597</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-598"><a href="#L-598"><span class="linenos"> 598</span></a>                <span class="c1"># Fill the two timeslices in the middle of the lattice with their predecessors</span>
+</span><span id="L-599"><a href="#L-599"><span class="linenos"> 599</span></a>                <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;sinh&#39;</span> <span class="ow">and</span> <span class="n">t</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]:</span>
+</span><span id="L-600"><a href="#L-600"><span class="linenos"> 600</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-601"><a href="#L-601"><span class="linenos"> 601</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-602"><a href="#L-602"><span class="linenos"> 602</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">find_root</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">root_function</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="n">guess</span><span class="p">)))</span>
+</span><span id="L-603"><a href="#L-603"><span class="linenos"> 603</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-604"><a href="#L-604"><span class="linenos"> 604</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="L-605"><a href="#L-605"><span class="linenos"> 605</span></a>
+</span><span id="L-606"><a href="#L-606"><span class="linenos"> 606</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="L-607"><a href="#L-607"><span class="linenos"> 607</span></a>
+</span><span id="L-608"><a href="#L-608"><span class="linenos"> 608</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;arccosh&#39;</span><span class="p">:</span>
+</span><span id="L-609"><a href="#L-609"><span class="linenos"> 609</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-610"><a href="#L-610"><span class="linenos"> 610</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-611"><a href="#L-611"><span class="linenos"> 611</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-612"><a href="#L-612"><span class="linenos"> 612</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-613"><a href="#L-613"><span class="linenos"> 613</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-614"><a href="#L-614"><span class="linenos"> 614</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]))</span>
+</span><span id="L-615"><a href="#L-615"><span class="linenos"> 615</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="L-616"><a href="#L-616"><span class="linenos"> 616</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;m_eff is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="L-617"><a href="#L-617"><span class="linenos"> 617</span></a>            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-618"><a href="#L-618"><span class="linenos"> 618</span></a>
+</span><span id="L-619"><a href="#L-619"><span class="linenos"> 619</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-620"><a href="#L-620"><span class="linenos"> 620</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown variant.&#39;</span><span class="p">)</span>
+</span><span id="L-621"><a href="#L-621"><span class="linenos"> 621</span></a>
+</span><span id="L-622"><a href="#L-622"><span class="linenos"> 622</span></a>    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">fitrange</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-623"><a href="#L-623"><span class="linenos"> 623</span></a>        <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Fits function to the data</span>
+</span><span id="L-624"><a href="#L-624"><span class="linenos"> 624</span></a>
+</span><span id="L-625"><a href="#L-625"><span class="linenos"> 625</span></a><span class="sd">        Parameters</span>
+</span><span id="L-626"><a href="#L-626"><span class="linenos"> 626</span></a><span class="sd">        ----------</span>
+</span><span id="L-627"><a href="#L-627"><span class="linenos"> 627</span></a><span class="sd">        function : obj</span>
+</span><span id="L-628"><a href="#L-628"><span class="linenos"> 628</span></a><span class="sd">            function to fit to the data. See fits.least_squares for details.</span>
+</span><span id="L-629"><a href="#L-629"><span class="linenos"> 629</span></a><span class="sd">        fitrange : list</span>
+</span><span id="L-630"><a href="#L-630"><span class="linenos"> 630</span></a><span class="sd">            Two element list containing the timeslices on which the fit is supposed to start and stop.</span>
+</span><span id="L-631"><a href="#L-631"><span class="linenos"> 631</span></a><span class="sd">            Caution: This range is inclusive as opposed to standard python indexing.</span>
+</span><span id="L-632"><a href="#L-632"><span class="linenos"> 632</span></a><span class="sd">            `fitrange=[4, 6]` corresponds to the three entries 4, 5 and 6.</span>
+</span><span id="L-633"><a href="#L-633"><span class="linenos"> 633</span></a><span class="sd">            If not specified, self.prange or all timeslices are used.</span>
+</span><span id="L-634"><a href="#L-634"><span class="linenos"> 634</span></a><span class="sd">        silent : bool</span>
+</span><span id="L-635"><a href="#L-635"><span class="linenos"> 635</span></a><span class="sd">            Decides whether output is printed to the standard output.</span>
+</span><span id="L-636"><a href="#L-636"><span class="linenos"> 636</span></a><span class="sd">        &#39;&#39;&#39;</span>
+</span><span id="L-637"><a href="#L-637"><span class="linenos"> 637</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-638"><a href="#L-638"><span class="linenos"> 638</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before fitting&quot;</span><span class="p">)</span>
+</span><span id="L-639"><a href="#L-639"><span class="linenos"> 639</span></a>
+</span><span id="L-640"><a href="#L-640"><span class="linenos"> 640</span></a>        <span class="k">if</span> <span class="n">fitrange</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-641"><a href="#L-641"><span class="linenos"> 641</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="L-642"><a href="#L-642"><span class="linenos"> 642</span></a>                <span class="n">fitrange</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="L-643"><a href="#L-643"><span class="linenos"> 643</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-644"><a href="#L-644"><span class="linenos"> 644</span></a>                <span class="n">fitrange</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="L-645"><a href="#L-645"><span class="linenos"> 645</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-646"><a href="#L-646"><span class="linenos"> 646</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fitrange</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-647"><a href="#L-647"><span class="linenos"> 647</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to be a list with two elements&quot;</span><span class="p">)</span>
+</span><span id="L-648"><a href="#L-648"><span class="linenos"> 648</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">fitrange</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-649"><a href="#L-649"><span class="linenos"> 649</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to have exactly two elements [fit_start, fit_stop]&quot;</span><span class="p">)</span>
+</span><span id="L-650"><a href="#L-650"><span class="linenos"> 650</span></a>
+</span><span id="L-651"><a href="#L-651"><span class="linenos"> 651</span></a>        <span class="n">xs</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="L-652"><a href="#L-652"><span class="linenos"> 652</span></a>        <span class="n">ys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="L-653"><a href="#L-653"><span class="linenos"> 653</span></a>        <span class="n">result</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">xs</span><span class="p">,</span> <span class="n">ys</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-654"><a href="#L-654"><span class="linenos"> 654</span></a>        <span class="k">return</span> <span class="n">result</span>
+</span><span id="L-655"><a href="#L-655"><span class="linenos"> 655</span></a>
+</span><span id="L-656"><a href="#L-656"><span class="linenos"> 656</span></a>    <span class="k">def</span> <span class="nf">plateau</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">plateau_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fit&quot;</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-657"><a href="#L-657"><span class="linenos"> 657</span></a>        <span class="sd">&quot;&quot;&quot; Extract a plateau value from a Corr object</span>
+</span><span id="L-658"><a href="#L-658"><span class="linenos"> 658</span></a>
+</span><span id="L-659"><a href="#L-659"><span class="linenos"> 659</span></a><span class="sd">        Parameters</span>
+</span><span id="L-660"><a href="#L-660"><span class="linenos"> 660</span></a><span class="sd">        ----------</span>
+</span><span id="L-661"><a href="#L-661"><span class="linenos"> 661</span></a><span class="sd">        plateau_range : list</span>
+</span><span id="L-662"><a href="#L-662"><span class="linenos"> 662</span></a><span class="sd">            list with two entries, indicating the first and the last timeslice</span>
+</span><span id="L-663"><a href="#L-663"><span class="linenos"> 663</span></a><span class="sd">            of the plateau region.</span>
+</span><span id="L-664"><a href="#L-664"><span class="linenos"> 664</span></a><span class="sd">        method : str</span>
+</span><span id="L-665"><a href="#L-665"><span class="linenos"> 665</span></a><span class="sd">            method to extract the plateau.</span>
+</span><span id="L-666"><a href="#L-666"><span class="linenos"> 666</span></a><span class="sd">                &#39;fit&#39; fits a constant to the plateau region</span>
+</span><span id="L-667"><a href="#L-667"><span class="linenos"> 667</span></a><span class="sd">                &#39;avg&#39;, &#39;average&#39; or &#39;mean&#39; just average over the given timeslices.</span>
+</span><span id="L-668"><a href="#L-668"><span class="linenos"> 668</span></a><span class="sd">        auto_gamma : bool</span>
+</span><span id="L-669"><a href="#L-669"><span class="linenos"> 669</span></a><span class="sd">            apply gamma_method with default parameters to the Corr. Defaults to None</span>
+</span><span id="L-670"><a href="#L-670"><span class="linenos"> 670</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-671"><a href="#L-671"><span class="linenos"> 671</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">plateau_range</span><span class="p">:</span>
+</span><span id="L-672"><a href="#L-672"><span class="linenos"> 672</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="L-673"><a href="#L-673"><span class="linenos"> 673</span></a>                <span class="n">plateau_range</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="L-674"><a href="#L-674"><span class="linenos"> 674</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-675"><a href="#L-675"><span class="linenos"> 675</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;no plateau range provided&quot;</span><span class="p">)</span>
+</span><span id="L-676"><a href="#L-676"><span class="linenos"> 676</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-677"><a href="#L-677"><span class="linenos"> 677</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before getting a plateau.&quot;</span><span class="p">)</span>
+</span><span id="L-678"><a href="#L-678"><span class="linenos"> 678</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)])):</span>
+</span><span id="L-679"><a href="#L-679"><span class="linenos"> 679</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;plateau is undefined at all timeslices in plateaurange.&quot;</span><span class="p">)</span>
+</span><span id="L-680"><a href="#L-680"><span class="linenos"> 680</span></a>        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="L-681"><a href="#L-681"><span class="linenos"> 681</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="L-682"><a href="#L-682"><span class="linenos"> 682</span></a>        <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;fit&quot;</span><span class="p">:</span>
+</span><span id="L-683"><a href="#L-683"><span class="linenos"> 683</span></a>            <span class="k">def</span> <span class="nf">const_func</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">t</span><span class="p">):</span>
+</span><span id="L-684"><a href="#L-684"><span class="linenos"> 684</span></a>                <span class="k">return</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-685"><a href="#L-685"><span class="linenos"> 685</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">const_func</span><span class="p">,</span> <span class="n">plateau_range</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-686"><a href="#L-686"><span class="linenos"> 686</span></a>        <span class="k">elif</span> <span class="n">method</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;avg&quot;</span><span class="p">,</span> <span class="s2">&quot;average&quot;</span><span class="p">,</span> <span class="s2">&quot;mean&quot;</span><span class="p">]:</span>
+</span><span id="L-687"><a href="#L-687"><span class="linenos"> 687</span></a>            <span class="n">returnvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">([</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
+</span><span id="L-688"><a href="#L-688"><span class="linenos"> 688</span></a>            <span class="k">return</span> <span class="n">returnvalue</span>
+</span><span id="L-689"><a href="#L-689"><span class="linenos"> 689</span></a>
+</span><span id="L-690"><a href="#L-690"><span class="linenos"> 690</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-691"><a href="#L-691"><span class="linenos"> 691</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsupported plateau method: &quot;</span> <span class="o">+</span> <span class="n">method</span><span class="p">)</span>
+</span><span id="L-692"><a href="#L-692"><span class="linenos"> 692</span></a>
+</span><span id="L-693"><a href="#L-693"><span class="linenos"> 693</span></a>    <span class="k">def</span> <span class="nf">set_prange</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prange</span><span class="p">):</span>
+</span><span id="L-694"><a href="#L-694"><span class="linenos"> 694</span></a>        <span class="sd">&quot;&quot;&quot;Sets the attribute prange of the Corr object.&quot;&quot;&quot;</span>
+</span><span id="L-695"><a href="#L-695"><span class="linenos"> 695</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">prange</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-696"><a href="#L-696"><span class="linenos"> 696</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;prange must be a list or array with two values&quot;</span><span class="p">)</span>
+</span><span id="L-697"><a href="#L-697"><span class="linenos"> 697</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">((</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">))</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="nb">int</span><span class="p">))):</span>
+</span><span id="L-698"><a href="#L-698"><span class="linenos"> 698</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must be integers&quot;</span><span class="p">)</span>
+</span><span id="L-699"><a href="#L-699"><span class="linenos"> 699</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="L-700"><a href="#L-700"><span class="linenos"> 700</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must define a range in the interval 0,T&quot;</span><span class="p">)</span>
+</span><span id="L-701"><a href="#L-701"><span class="linenos"> 701</span></a>
+</span><span id="L-702"><a href="#L-702"><span class="linenos"> 702</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
+</span><span id="L-703"><a href="#L-703"><span class="linenos"> 703</span></a>        <span class="k">return</span>
+</span><span id="L-704"><a href="#L-704"><span class="linenos"> 704</span></a>
+</span><span id="L-705"><a href="#L-705"><span class="linenos"> 705</span></a>    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">y_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">plateau</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fit_res</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ylabel</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-706"><a href="#L-706"><span class="linenos"> 706</span></a>        <span class="sd">&quot;&quot;&quot;Plots the correlator using the tag of the correlator as label if available.</span>
+</span><span id="L-707"><a href="#L-707"><span class="linenos"> 707</span></a>
+</span><span id="L-708"><a href="#L-708"><span class="linenos"> 708</span></a><span class="sd">        Parameters</span>
+</span><span id="L-709"><a href="#L-709"><span class="linenos"> 709</span></a><span class="sd">        ----------</span>
+</span><span id="L-710"><a href="#L-710"><span class="linenos"> 710</span></a><span class="sd">        x_range : list</span>
+</span><span id="L-711"><a href="#L-711"><span class="linenos"> 711</span></a><span class="sd">            list of two values, determining the range of the x-axis e.g. [4, 8]</span>
+</span><span id="L-712"><a href="#L-712"><span class="linenos"> 712</span></a><span class="sd">        comp : Corr or list of Corr</span>
+</span><span id="L-713"><a href="#L-713"><span class="linenos"> 713</span></a><span class="sd">            Correlator or list of correlators which are plotted for comparison.</span>
+</span><span id="L-714"><a href="#L-714"><span class="linenos"> 714</span></a><span class="sd">            The tags of these correlators are used as labels if available.</span>
+</span><span id="L-715"><a href="#L-715"><span class="linenos"> 715</span></a><span class="sd">        logscale : bool</span>
+</span><span id="L-716"><a href="#L-716"><span class="linenos"> 716</span></a><span class="sd">            Sets y-axis to logscale</span>
+</span><span id="L-717"><a href="#L-717"><span class="linenos"> 717</span></a><span class="sd">        plateau : Obs</span>
+</span><span id="L-718"><a href="#L-718"><span class="linenos"> 718</span></a><span class="sd">            Plateau value to be visualized in the figure</span>
+</span><span id="L-719"><a href="#L-719"><span class="linenos"> 719</span></a><span class="sd">        fit_res : Fit_result</span>
+</span><span id="L-720"><a href="#L-720"><span class="linenos"> 720</span></a><span class="sd">            Fit_result object to be visualized</span>
+</span><span id="L-721"><a href="#L-721"><span class="linenos"> 721</span></a><span class="sd">        ylabel : str</span>
+</span><span id="L-722"><a href="#L-722"><span class="linenos"> 722</span></a><span class="sd">            Label for the y-axis</span>
+</span><span id="L-723"><a href="#L-723"><span class="linenos"> 723</span></a><span class="sd">        save : str</span>
+</span><span id="L-724"><a href="#L-724"><span class="linenos"> 724</span></a><span class="sd">            path to file in which the figure should be saved</span>
+</span><span id="L-725"><a href="#L-725"><span class="linenos"> 725</span></a><span class="sd">        auto_gamma : bool</span>
+</span><span id="L-726"><a href="#L-726"><span class="linenos"> 726</span></a><span class="sd">            Apply the gamma method with standard parameters to all correlators and plateau values before plotting.</span>
+</span><span id="L-727"><a href="#L-727"><span class="linenos"> 727</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-728"><a href="#L-728"><span class="linenos"> 728</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-729"><a href="#L-729"><span class="linenos"> 729</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before plotting&quot;</span><span class="p">)</span>
+</span><span id="L-730"><a href="#L-730"><span class="linenos"> 730</span></a>
+</span><span id="L-731"><a href="#L-731"><span class="linenos"> 731</span></a>        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="L-732"><a href="#L-732"><span class="linenos"> 732</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="L-733"><a href="#L-733"><span class="linenos"> 733</span></a>
+</span><span id="L-734"><a href="#L-734"><span class="linenos"> 734</span></a>        <span class="k">if</span> <span class="n">x_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-735"><a href="#L-735"><span class="linenos"> 735</span></a>            <span class="n">x_range</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="L-736"><a href="#L-736"><span class="linenos"> 736</span></a>
+</span><span id="L-737"><a href="#L-737"><span class="linenos"> 737</span></a>        <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="L-738"><a href="#L-738"><span class="linenos"> 738</span></a>        <span class="n">ax1</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
+</span><span id="L-739"><a href="#L-739"><span class="linenos"> 739</span></a>
+</span><span id="L-740"><a href="#L-740"><span class="linenos"> 740</span></a>        <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
+</span><span id="L-741"><a href="#L-741"><span class="linenos"> 741</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="L-742"><a href="#L-742"><span class="linenos"> 742</span></a>        <span class="k">if</span> <span class="n">logscale</span><span class="p">:</span>
+</span><span id="L-743"><a href="#L-743"><span class="linenos"> 743</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
+</span><span id="L-744"><a href="#L-744"><span class="linenos"> 744</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-745"><a href="#L-745"><span class="linenos"> 745</span></a>            <span class="k">if</span> <span class="n">y_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-746"><a href="#L-746"><span class="linenos"> 746</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="L-747"><a href="#L-747"><span class="linenos"> 747</span></a>                    <span class="n">y_min</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-748"><a href="#L-748"><span class="linenos"> 748</span></a>                    <span class="n">y_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-749"><a href="#L-749"><span class="linenos"> 749</span></a>                    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">([</span><span class="n">y_min</span> <span class="o">-</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">),</span> <span class="n">y_max</span> <span class="o">+</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">)])</span>
+</span><span id="L-750"><a href="#L-750"><span class="linenos"> 750</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-751"><a href="#L-751"><span class="linenos"> 751</span></a>                    <span class="k">pass</span>
+</span><span id="L-752"><a href="#L-752"><span class="linenos"> 752</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-753"><a href="#L-753"><span class="linenos"> 753</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">y_range</span><span class="p">)</span>
+</span><span id="L-754"><a href="#L-754"><span class="linenos"> 754</span></a>        <span class="k">if</span> <span class="n">comp</span><span class="p">:</span>
+</span><span id="L-755"><a href="#L-755"><span class="linenos"> 755</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="p">(</span><span class="n">Corr</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
+</span><span id="L-756"><a href="#L-756"><span class="linenos"> 756</span></a>                <span class="k">for</span> <span class="n">corr</span> <span class="ow">in</span> <span class="n">comp</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="p">[</span><span class="n">comp</span><span class="p">]:</span>
+</span><span id="L-757"><a href="#L-757"><span class="linenos"> 757</span></a>                    <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="L-758"><a href="#L-758"><span class="linenos"> 758</span></a>                        <span class="n">corr</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="L-759"><a href="#L-759"><span class="linenos"> 759</span></a>                    <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="n">corr</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
+</span><span id="L-760"><a href="#L-760"><span class="linenos"> 760</span></a>                    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">corr</span><span class="o">.</span><span class="n">tag</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
+</span><span id="L-761"><a href="#L-761"><span class="linenos"> 761</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-762"><a href="#L-762"><span class="linenos"> 762</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;comp&#39; must be a correlator or a list of correlators.&quot;</span><span class="p">)</span>
+</span><span id="L-763"><a href="#L-763"><span class="linenos"> 763</span></a>
+</span><span id="L-764"><a href="#L-764"><span class="linenos"> 764</span></a>        <span class="k">if</span> <span class="n">plateau</span><span class="p">:</span>
+</span><span id="L-765"><a href="#L-765"><span class="linenos"> 765</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">plateau</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-766"><a href="#L-766"><span class="linenos"> 766</span></a>                <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="L-767"><a href="#L-767"><span class="linenos"> 767</span></a>                    <span class="n">plateau</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="L-768"><a href="#L-768"><span class="linenos"> 768</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.6</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">plateau</span><span class="p">))</span>
+</span><span id="L-769"><a href="#L-769"><span class="linenos"> 769</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">axhspan</span><span class="p">(</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
+</span><span id="L-770"><a href="#L-770"><span class="linenos"> 770</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-771"><a href="#L-771"><span class="linenos"> 771</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;plateau&#39; must be an Obs&quot;</span><span class="p">)</span>
+</span><span id="L-772"><a href="#L-772"><span class="linenos"> 772</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="L-773"><a href="#L-773"><span class="linenos"> 773</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="L-774"><a href="#L-774"><span class="linenos"> 774</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="L-775"><a href="#L-775"><span class="linenos"> 775</span></a>
+</span><span id="L-776"><a href="#L-776"><span class="linenos"> 776</span></a>        <span class="k">if</span> <span class="n">fit_res</span><span class="p">:</span>
+</span><span id="L-777"><a href="#L-777"><span class="linenos"> 777</span></a>            <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">)</span>
+</span><span id="L-778"><a href="#L-778"><span class="linenos"> 778</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span>
+</span><span id="L-779"><a href="#L-779"><span class="linenos"> 779</span></a>                     <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_function</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span>
+</span><span id="L-780"><a href="#L-780"><span class="linenos"> 780</span></a>                     <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="L-781"><a href="#L-781"><span class="linenos"> 781</span></a>
+</span><span id="L-782"><a href="#L-782"><span class="linenos"> 782</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
+</span><span id="L-783"><a href="#L-783"><span class="linenos"> 783</span></a>        <span class="k">if</span> <span class="n">ylabel</span><span class="p">:</span>
+</span><span id="L-784"><a href="#L-784"><span class="linenos"> 784</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="n">ylabel</span><span class="p">)</span>
+</span><span id="L-785"><a href="#L-785"><span class="linenos"> 785</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">,</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">])</span>
+</span><span id="L-786"><a href="#L-786"><span class="linenos"> 786</span></a>
+</span><span id="L-787"><a href="#L-787"><span class="linenos"> 787</span></a>        <span class="n">handles</span><span class="p">,</span> <span class="n">labels</span> <span class="o">=</span> <span class="n">ax1</span><span class="o">.</span><span class="n">get_legend_handles_labels</span><span class="p">()</span>
+</span><span id="L-788"><a href="#L-788"><span class="linenos"> 788</span></a>        <span class="k">if</span> <span class="n">labels</span><span class="p">:</span>
+</span><span id="L-789"><a href="#L-789"><span class="linenos"> 789</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="L-790"><a href="#L-790"><span class="linenos"> 790</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-791"><a href="#L-791"><span class="linenos"> 791</span></a>
+</span><span id="L-792"><a href="#L-792"><span class="linenos"> 792</span></a>        <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="L-793"><a href="#L-793"><span class="linenos"> 793</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">save</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="L-794"><a href="#L-794"><span class="linenos"> 794</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
+</span><span id="L-795"><a href="#L-795"><span class="linenos"> 795</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-796"><a href="#L-796"><span class="linenos"> 796</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;save&#39; has to be a string.&quot;</span><span class="p">)</span>
+</span><span id="L-797"><a href="#L-797"><span class="linenos"> 797</span></a>
+</span><span id="L-798"><a href="#L-798"><span class="linenos"> 798</span></a>    <span class="k">def</span> <span class="nf">spaghetti_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="L-799"><a href="#L-799"><span class="linenos"> 799</span></a>        <span class="sd">&quot;&quot;&quot;Produces a spaghetti plot of the correlator suited to monitor exceptional configurations.</span>
+</span><span id="L-800"><a href="#L-800"><span class="linenos"> 800</span></a>
+</span><span id="L-801"><a href="#L-801"><span class="linenos"> 801</span></a><span class="sd">        Parameters</span>
+</span><span id="L-802"><a href="#L-802"><span class="linenos"> 802</span></a><span class="sd">        ----------</span>
+</span><span id="L-803"><a href="#L-803"><span class="linenos"> 803</span></a><span class="sd">        logscale : bool</span>
+</span><span id="L-804"><a href="#L-804"><span class="linenos"> 804</span></a><span class="sd">            Determines whether the scale of the y-axis is logarithmic or standard.</span>
+</span><span id="L-805"><a href="#L-805"><span class="linenos"> 805</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-806"><a href="#L-806"><span class="linenos"> 806</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-807"><a href="#L-807"><span class="linenos"> 807</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator needs to be projected first.&quot;</span><span class="p">)</span>
+</span><span id="L-808"><a href="#L-808"><span class="linenos"> 808</span></a>
+</span><span id="L-809"><a href="#L-809"><span class="linenos"> 809</span></a>        <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]))</span>
+</span><span id="L-810"><a href="#L-810"><span class="linenos"> 810</span></a>        <span class="n">x0_vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">n</span> <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="L-811"><a href="#L-811"><span class="linenos"> 811</span></a>
+</span><span id="L-812"><a href="#L-812"><span class="linenos"> 812</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
+</span><span id="L-813"><a href="#L-813"><span class="linenos"> 813</span></a>            <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-814"><a href="#L-814"><span class="linenos"> 814</span></a>
+</span><span id="L-815"><a href="#L-815"><span class="linenos"> 815</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="L-816"><a href="#L-816"><span class="linenos"> 816</span></a>            <span class="n">ax</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
+</span><span id="L-817"><a href="#L-817"><span class="linenos"> 817</span></a>            <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
+</span><span id="L-818"><a href="#L-818"><span class="linenos"> 818</span></a>                <span class="n">ax</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x0_vals</span><span class="p">,</span> <span class="n">dat</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-819"><a href="#L-819"><span class="linenos"> 819</span></a>
+</span><span id="L-820"><a href="#L-820"><span class="linenos"> 820</span></a>            <span class="k">if</span> <span class="n">logscale</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-821"><a href="#L-821"><span class="linenos"> 821</span></a>                <span class="n">ax</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
+</span><span id="L-822"><a href="#L-822"><span class="linenos"> 822</span></a>
+</span><span id="L-823"><a href="#L-823"><span class="linenos"> 823</span></a>            <span class="n">ax</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
+</span><span id="L-824"><a href="#L-824"><span class="linenos"> 824</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="L-825"><a href="#L-825"><span class="linenos"> 825</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-826"><a href="#L-826"><span class="linenos"> 826</span></a>
+</span><span id="L-827"><a href="#L-827"><span class="linenos"> 827</span></a>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-828"><a href="#L-828"><span class="linenos"> 828</span></a>        <span class="sd">&quot;&quot;&quot;Dumps the Corr into a file of chosen type</span>
+</span><span id="L-829"><a href="#L-829"><span class="linenos"> 829</span></a><span class="sd">        Parameters</span>
+</span><span id="L-830"><a href="#L-830"><span class="linenos"> 830</span></a><span class="sd">        ----------</span>
+</span><span id="L-831"><a href="#L-831"><span class="linenos"> 831</span></a><span class="sd">        filename : str</span>
+</span><span id="L-832"><a href="#L-832"><span class="linenos"> 832</span></a><span class="sd">            Name of the file to be saved.</span>
+</span><span id="L-833"><a href="#L-833"><span class="linenos"> 833</span></a><span class="sd">        datatype : str</span>
+</span><span id="L-834"><a href="#L-834"><span class="linenos"> 834</span></a><span class="sd">            Format of the exported file. Supported formats include</span>
+</span><span id="L-835"><a href="#L-835"><span class="linenos"> 835</span></a><span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
+</span><span id="L-836"><a href="#L-836"><span class="linenos"> 836</span></a><span class="sd">        path : str</span>
+</span><span id="L-837"><a href="#L-837"><span class="linenos"> 837</span></a><span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="L-838"><a href="#L-838"><span class="linenos"> 838</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-839"><a href="#L-839"><span class="linenos"> 839</span></a>        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
+</span><span id="L-840"><a href="#L-840"><span class="linenos"> 840</span></a>            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
+</span><span id="L-841"><a href="#L-841"><span class="linenos"> 841</span></a>            <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-842"><a href="#L-842"><span class="linenos"> 842</span></a>                <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
+</span><span id="L-843"><a href="#L-843"><span class="linenos"> 843</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-844"><a href="#L-844"><span class="linenos"> 844</span></a>                <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
+</span><span id="L-845"><a href="#L-845"><span class="linenos"> 845</span></a>            <span class="n">dump_to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_name</span><span class="p">)</span>
+</span><span id="L-846"><a href="#L-846"><span class="linenos"> 846</span></a>        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
+</span><span id="L-847"><a href="#L-847"><span class="linenos"> 847</span></a>            <span class="n">dump_object</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-848"><a href="#L-848"><span class="linenos"> 848</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-849"><a href="#L-849"><span class="linenos"> 849</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
+</span><span id="L-850"><a href="#L-850"><span class="linenos"> 850</span></a>
+</span><span id="L-851"><a href="#L-851"><span class="linenos"> 851</span></a>    <span class="k">def</span> <span class="nf">print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
+</span><span id="L-852"><a href="#L-852"><span class="linenos"> 852</span></a>        <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">(</span><span class="nb">range</span><span class="p">))</span>
+</span><span id="L-853"><a href="#L-853"><span class="linenos"> 853</span></a>
+</span><span id="L-854"><a href="#L-854"><span class="linenos"> 854</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
+</span><span id="L-855"><a href="#L-855"><span class="linenos"> 855</span></a>        <span class="n">content_string</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+</span><span id="L-856"><a href="#L-856"><span class="linenos"> 856</span></a>
+</span><span id="L-857"><a href="#L-857"><span class="linenos"> 857</span></a>        <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Corr T=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; N=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>  <span class="c1"># +&quot; filled with&quot;+ str(type(self.content[0][0])) there should be a good solution here</span>
+</span><span id="L-858"><a href="#L-858"><span class="linenos"> 858</span></a>
+</span><span id="L-859"><a href="#L-859"><span class="linenos"> 859</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-860"><a href="#L-860"><span class="linenos"> 860</span></a>            <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Description: &quot;</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>
+</span><span id="L-861"><a href="#L-861"><span class="linenos"> 861</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-862"><a href="#L-862"><span class="linenos"> 862</span></a>            <span class="k">return</span> <span class="n">content_string</span>
+</span><span id="L-863"><a href="#L-863"><span class="linenos"> 863</span></a>
+</span><span id="L-864"><a href="#L-864"><span class="linenos"> 864</span></a>        <span class="k">if</span> <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="L-865"><a href="#L-865"><span class="linenos"> 865</span></a>            <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-866"><a href="#L-866"><span class="linenos"> 866</span></a>        <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;x0/a</span><span class="se">\t</span><span class="s1">Corr(x0/a)</span><span class="se">\n</span><span class="s1">------------------</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-867"><a href="#L-867"><span class="linenos"> 867</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">sub_corr</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]]):</span>
+</span><span id="L-868"><a href="#L-868"><span class="linenos"> 868</span></a>            <span class="k">if</span> <span class="n">sub_corr</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-869"><a href="#L-869"><span class="linenos"> 869</span></a>                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-870"><a href="#L-870"><span class="linenos"> 870</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-871"><a href="#L-871"><span class="linenos"> 871</span></a>                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-872"><a href="#L-872"><span class="linenos"> 872</span></a>                <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">sub_corr</span><span class="p">:</span>
+</span><span id="L-873"><a href="#L-873"><span class="linenos"> 873</span></a>                    <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">element</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-874"><a href="#L-874"><span class="linenos"> 874</span></a>                <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-875"><a href="#L-875"><span class="linenos"> 875</span></a>        <span class="k">return</span> <span class="n">content_string</span>
+</span><span id="L-876"><a href="#L-876"><span class="linenos"> 876</span></a>
+</span><span id="L-877"><a href="#L-877"><span class="linenos"> 877</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-878"><a href="#L-878"><span class="linenos"> 878</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
+</span><span id="L-879"><a href="#L-879"><span class="linenos"> 879</span></a>
+</span><span id="L-880"><a href="#L-880"><span class="linenos"> 880</span></a>    <span class="c1"># We define the basic operations, that can be performed with correlators.</span>
+</span><span id="L-881"><a href="#L-881"><span class="linenos"> 881</span></a>    <span class="c1"># While */+- get defined here, they only work for Corr*Obs and not Obs*Corr.</span>
+</span><span id="L-882"><a href="#L-882"><span class="linenos"> 882</span></a>    <span class="c1"># This is because Obs*Corr checks Obs.__mul__ first and does not catch an exception.</span>
+</span><span id="L-883"><a href="#L-883"><span class="linenos"> 883</span></a>    <span class="c1"># One could try and tell Obs to check if the y in __mul__ is a Corr and</span>
+</span><span id="L-884"><a href="#L-884"><span class="linenos"> 884</span></a>
+</span><span id="L-885"><a href="#L-885"><span class="linenos"> 885</span></a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-886"><a href="#L-886"><span class="linenos"> 886</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="L-887"><a href="#L-887"><span class="linenos"> 887</span></a>            <span class="k">if</span> <span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">)):</span>
+</span><span id="L-888"><a href="#L-888"><span class="linenos"> 888</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Addition of Corrs with different shape&quot;</span><span class="p">)</span>
+</span><span id="L-889"><a href="#L-889"><span class="linenos"> 889</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-890"><a href="#L-890"><span class="linenos"> 890</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-891"><a href="#L-891"><span class="linenos"> 891</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-892"><a href="#L-892"><span class="linenos"> 892</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-893"><a href="#L-893"><span class="linenos"> 893</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-894"><a href="#L-894"><span class="linenos"> 894</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="L-895"><a href="#L-895"><span class="linenos"> 895</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="L-896"><a href="#L-896"><span class="linenos"> 896</span></a>
+</span><span id="L-897"><a href="#L-897"><span class="linenos"> 897</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="L-898"><a href="#L-898"><span class="linenos"> 898</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-899"><a href="#L-899"><span class="linenos"> 899</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-900"><a href="#L-900"><span class="linenos"> 900</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-901"><a href="#L-901"><span class="linenos"> 901</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-902"><a href="#L-902"><span class="linenos"> 902</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-903"><a href="#L-903"><span class="linenos"> 903</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="L-904"><a href="#L-904"><span class="linenos"> 904</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-905"><a href="#L-905"><span class="linenos"> 905</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-906"><a href="#L-906"><span class="linenos"> 906</span></a>            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
+</span><span id="L-907"><a href="#L-907"><span class="linenos"> 907</span></a>                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
+</span><span id="L-908"><a href="#L-908"><span class="linenos"> 908</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-909"><a href="#L-909"><span class="linenos"> 909</span></a>                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
+</span><span id="L-910"><a href="#L-910"><span class="linenos"> 910</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-911"><a href="#L-911"><span class="linenos"> 911</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr + wrong type&quot;</span><span class="p">)</span>
+</span><span id="L-912"><a href="#L-912"><span class="linenos"> 912</span></a>
+</span><span id="L-913"><a href="#L-913"><span class="linenos"> 913</span></a>    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-914"><a href="#L-914"><span class="linenos"> 914</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="L-915"><a href="#L-915"><span class="linenos"> 915</span></a>            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-916"><a href="#L-916"><span class="linenos"> 916</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
+</span><span id="L-917"><a href="#L-917"><span class="linenos"> 917</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-918"><a href="#L-918"><span class="linenos"> 918</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-919"><a href="#L-919"><span class="linenos"> 919</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-920"><a href="#L-920"><span class="linenos"> 920</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-921"><a href="#L-921"><span class="linenos"> 921</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-922"><a href="#L-922"><span class="linenos"> 922</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="L-923"><a href="#L-923"><span class="linenos"> 923</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="L-924"><a href="#L-924"><span class="linenos"> 924</span></a>
+</span><span id="L-925"><a href="#L-925"><span class="linenos"> 925</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="L-926"><a href="#L-926"><span class="linenos"> 926</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-927"><a href="#L-927"><span class="linenos"> 927</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-928"><a href="#L-928"><span class="linenos"> 928</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-929"><a href="#L-929"><span class="linenos"> 929</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-930"><a href="#L-930"><span class="linenos"> 930</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-931"><a href="#L-931"><span class="linenos"> 931</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="L-932"><a href="#L-932"><span class="linenos"> 932</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-933"><a href="#L-933"><span class="linenos"> 933</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-934"><a href="#L-934"><span class="linenos"> 934</span></a>            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
+</span><span id="L-935"><a href="#L-935"><span class="linenos"> 935</span></a>                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
+</span><span id="L-936"><a href="#L-936"><span class="linenos"> 936</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-937"><a href="#L-937"><span class="linenos"> 937</span></a>                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
+</span><span id="L-938"><a href="#L-938"><span class="linenos"> 938</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-939"><a href="#L-939"><span class="linenos"> 939</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr * wrong type&quot;</span><span class="p">)</span>
+</span><span id="L-940"><a href="#L-940"><span class="linenos"> 940</span></a>
+</span><span id="L-941"><a href="#L-941"><span class="linenos"> 941</span></a>    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-942"><a href="#L-942"><span class="linenos"> 942</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="L-943"><a href="#L-943"><span class="linenos"> 943</span></a>            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-944"><a href="#L-944"><span class="linenos"> 944</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
+</span><span id="L-945"><a href="#L-945"><span class="linenos"> 945</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-946"><a href="#L-946"><span class="linenos"> 946</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-947"><a href="#L-947"><span class="linenos"> 947</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-948"><a href="#L-948"><span class="linenos"> 948</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-949"><a href="#L-949"><span class="linenos"> 949</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-950"><a href="#L-950"><span class="linenos"> 950</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="L-951"><a href="#L-951"><span class="linenos"> 951</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-952"><a href="#L-952"><span class="linenos"> 952</span></a>                <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-953"><a href="#L-953"><span class="linenos"> 953</span></a>                    <span class="k">continue</span>
+</span><span id="L-954"><a href="#L-954"><span class="linenos"> 954</span></a>                <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
+</span><span id="L-955"><a href="#L-955"><span class="linenos"> 955</span></a>                    <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-956"><a href="#L-956"><span class="linenos"> 956</span></a>
+</span><span id="L-957"><a href="#L-957"><span class="linenos"> 957</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
+</span><span id="L-958"><a href="#L-958"><span class="linenos"> 958</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Division returns completely undefined correlator&quot;</span><span class="p">)</span>
+</span><span id="L-959"><a href="#L-959"><span class="linenos"> 959</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="L-960"><a href="#L-960"><span class="linenos"> 960</span></a>
+</span><span id="L-961"><a href="#L-961"><span class="linenos"> 961</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="L-962"><a href="#L-962"><span class="linenos"> 962</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-963"><a href="#L-963"><span class="linenos"> 963</span></a>                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-964"><a href="#L-964"><span class="linenos"> 964</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="L-965"><a href="#L-965"><span class="linenos"> 965</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="L-966"><a href="#L-966"><span class="linenos"> 966</span></a>                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">is_zero</span><span class="p">():</span>
+</span><span id="L-967"><a href="#L-967"><span class="linenos"> 967</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="L-968"><a href="#L-968"><span class="linenos"> 968</span></a>
+</span><span id="L-969"><a href="#L-969"><span class="linenos"> 969</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-970"><a href="#L-970"><span class="linenos"> 970</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-971"><a href="#L-971"><span class="linenos"> 971</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-972"><a href="#L-972"><span class="linenos"> 972</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-973"><a href="#L-973"><span class="linenos"> 973</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-974"><a href="#L-974"><span class="linenos"> 974</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="L-975"><a href="#L-975"><span class="linenos"> 975</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-976"><a href="#L-976"><span class="linenos"> 976</span></a>
+</span><span id="L-977"><a href="#L-977"><span class="linenos"> 977</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+</span><span id="L-978"><a href="#L-978"><span class="linenos"> 978</span></a>            <span class="k">if</span> <span class="n">y</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-979"><a href="#L-979"><span class="linenos"> 979</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="L-980"><a href="#L-980"><span class="linenos"> 980</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-981"><a href="#L-981"><span class="linenos"> 981</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-982"><a href="#L-982"><span class="linenos"> 982</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="L-983"><a href="#L-983"><span class="linenos"> 983</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-984"><a href="#L-984"><span class="linenos"> 984</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-985"><a href="#L-985"><span class="linenos"> 985</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="L-986"><a href="#L-986"><span class="linenos"> 986</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-987"><a href="#L-987"><span class="linenos"> 987</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-988"><a href="#L-988"><span class="linenos"> 988</span></a>            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
+</span><span id="L-989"><a href="#L-989"><span class="linenos"> 989</span></a>                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
+</span><span id="L-990"><a href="#L-990"><span class="linenos"> 990</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-991"><a href="#L-991"><span class="linenos"> 991</span></a>                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
+</span><span id="L-992"><a href="#L-992"><span class="linenos"> 992</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-993"><a href="#L-993"><span class="linenos"> 993</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Corr / wrong type&#39;</span><span class="p">)</span>
+</span><span id="L-994"><a href="#L-994"><span class="linenos"> 994</span></a>
+</span><span id="L-995"><a href="#L-995"><span class="linenos"> 995</span></a>    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-996"><a href="#L-996"><span class="linenos"> 996</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="o">-</span><span class="mf">1.</span> <span class="o">*</span> <span class="n">item</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-997"><a href="#L-997"><span class="linenos"> 997</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-998"><a href="#L-998"><span class="linenos"> 998</span></a>
+</span><span id="L-999"><a href="#L-999"><span class="linenos"> 999</span></a>    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-1000"><a href="#L-1000"><span class="linenos">1000</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="p">(</span><span class="o">-</span><span class="n">y</span><span class="p">)</span>
+</span><span id="L-1001"><a href="#L-1001"><span class="linenos">1001</span></a>
+</span><span id="L-1002"><a href="#L-1002"><span class="linenos">1002</span></a>    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-1003"><a href="#L-1003"><span class="linenos">1003</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="L-1004"><a href="#L-1004"><span class="linenos">1004</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="o">**</span><span class="n">y</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-1005"><a href="#L-1005"><span class="linenos">1005</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-1006"><a href="#L-1006"><span class="linenos">1006</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1007"><a href="#L-1007"><span class="linenos">1007</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Type of exponent not supported&#39;</span><span class="p">)</span>
+</span><span id="L-1008"><a href="#L-1008"><span class="linenos">1008</span></a>
+</span><span id="L-1009"><a href="#L-1009"><span class="linenos">1009</span></a>    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1010"><a href="#L-1010"><span class="linenos">1010</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-1011"><a href="#L-1011"><span class="linenos">1011</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-1012"><a href="#L-1012"><span class="linenos">1012</span></a>
+</span><span id="L-1013"><a href="#L-1013"><span class="linenos">1013</span></a>    <span class="c1"># The numpy functions:</span>
+</span><span id="L-1014"><a href="#L-1014"><span class="linenos">1014</span></a>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1015"><a href="#L-1015"><span class="linenos">1015</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">**</span><span class="mf">0.5</span>
+</span><span id="L-1016"><a href="#L-1016"><span class="linenos">1016</span></a>
+</span><span id="L-1017"><a href="#L-1017"><span class="linenos">1017</span></a>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1018"><a href="#L-1018"><span class="linenos">1018</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-1019"><a href="#L-1019"><span class="linenos">1019</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-1020"><a href="#L-1020"><span class="linenos">1020</span></a>
+</span><span id="L-1021"><a href="#L-1021"><span class="linenos">1021</span></a>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1022"><a href="#L-1022"><span class="linenos">1022</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-1023"><a href="#L-1023"><span class="linenos">1023</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="L-1024"><a href="#L-1024"><span class="linenos">1024</span></a>
+</span><span id="L-1025"><a href="#L-1025"><span class="linenos">1025</span></a>    <span class="k">def</span> <span class="nf">_apply_func_to_corr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">func</span><span class="p">):</span>
+</span><span id="L-1026"><a href="#L-1026"><span class="linenos">1026</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">func</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-1027"><a href="#L-1027"><span class="linenos">1027</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-1028"><a href="#L-1028"><span class="linenos">1028</span></a>            <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-1029"><a href="#L-1029"><span class="linenos">1029</span></a>                <span class="k">continue</span>
+</span><span id="L-1030"><a href="#L-1030"><span class="linenos">1030</span></a>            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
+</span><span id="L-1031"><a href="#L-1031"><span class="linenos">1031</span></a>                <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-1032"><a href="#L-1032"><span class="linenos">1032</span></a>        <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
+</span><span id="L-1033"><a href="#L-1033"><span class="linenos">1033</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Operation returns undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="L-1034"><a href="#L-1034"><span class="linenos">1034</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="L-1035"><a href="#L-1035"><span class="linenos">1035</span></a>
+</span><span id="L-1036"><a href="#L-1036"><span class="linenos">1036</span></a>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1037"><a href="#L-1037"><span class="linenos">1037</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">)</span>
+</span><span id="L-1038"><a href="#L-1038"><span class="linenos">1038</span></a>
+</span><span id="L-1039"><a href="#L-1039"><span class="linenos">1039</span></a>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1040"><a href="#L-1040"><span class="linenos">1040</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">)</span>
+</span><span id="L-1041"><a href="#L-1041"><span class="linenos">1041</span></a>
+</span><span id="L-1042"><a href="#L-1042"><span class="linenos">1042</span></a>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1043"><a href="#L-1043"><span class="linenos">1043</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">)</span>
+</span><span id="L-1044"><a href="#L-1044"><span class="linenos">1044</span></a>
+</span><span id="L-1045"><a href="#L-1045"><span class="linenos">1045</span></a>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1046"><a href="#L-1046"><span class="linenos">1046</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">)</span>
+</span><span id="L-1047"><a href="#L-1047"><span class="linenos">1047</span></a>
+</span><span id="L-1048"><a href="#L-1048"><span class="linenos">1048</span></a>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1049"><a href="#L-1049"><span class="linenos">1049</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">)</span>
+</span><span id="L-1050"><a href="#L-1050"><span class="linenos">1050</span></a>
+</span><span id="L-1051"><a href="#L-1051"><span class="linenos">1051</span></a>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1052"><a href="#L-1052"><span class="linenos">1052</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">)</span>
+</span><span id="L-1053"><a href="#L-1053"><span class="linenos">1053</span></a>
+</span><span id="L-1054"><a href="#L-1054"><span class="linenos">1054</span></a>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1055"><a href="#L-1055"><span class="linenos">1055</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsin</span><span class="p">)</span>
+</span><span id="L-1056"><a href="#L-1056"><span class="linenos">1056</span></a>
+</span><span id="L-1057"><a href="#L-1057"><span class="linenos">1057</span></a>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1058"><a href="#L-1058"><span class="linenos">1058</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccos</span><span class="p">)</span>
+</span><span id="L-1059"><a href="#L-1059"><span class="linenos">1059</span></a>
+</span><span id="L-1060"><a href="#L-1060"><span class="linenos">1060</span></a>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1061"><a href="#L-1061"><span class="linenos">1061</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctan</span><span class="p">)</span>
+</span><span id="L-1062"><a href="#L-1062"><span class="linenos">1062</span></a>
+</span><span id="L-1063"><a href="#L-1063"><span class="linenos">1063</span></a>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1064"><a href="#L-1064"><span class="linenos">1064</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">)</span>
+</span><span id="L-1065"><a href="#L-1065"><span class="linenos">1065</span></a>
+</span><span id="L-1066"><a href="#L-1066"><span class="linenos">1066</span></a>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1067"><a href="#L-1067"><span class="linenos">1067</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">)</span>
+</span><span id="L-1068"><a href="#L-1068"><span class="linenos">1068</span></a>
+</span><span id="L-1069"><a href="#L-1069"><span class="linenos">1069</span></a>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1070"><a href="#L-1070"><span class="linenos">1070</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctanh</span><span class="p">)</span>
+</span><span id="L-1071"><a href="#L-1071"><span class="linenos">1071</span></a>
+</span><span id="L-1072"><a href="#L-1072"><span class="linenos">1072</span></a>    <span class="c1"># Right hand side operations (require tweak in main module to work)</span>
+</span><span id="L-1073"><a href="#L-1073"><span class="linenos">1073</span></a>    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-1074"><a href="#L-1074"><span class="linenos">1074</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="L-1075"><a href="#L-1075"><span class="linenos">1075</span></a>
+</span><span id="L-1076"><a href="#L-1076"><span class="linenos">1076</span></a>    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-1077"><a href="#L-1077"><span class="linenos">1077</span></a>        <span class="k">return</span> <span class="o">-</span><span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="L-1078"><a href="#L-1078"><span class="linenos">1078</span></a>
+</span><span id="L-1079"><a href="#L-1079"><span class="linenos">1079</span></a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-1080"><a href="#L-1080"><span class="linenos">1080</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
+</span><span id="L-1081"><a href="#L-1081"><span class="linenos">1081</span></a>
+</span><span id="L-1082"><a href="#L-1082"><span class="linenos">1082</span></a>    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-1083"><a href="#L-1083"><span class="linenos">1083</span></a>        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-1084"><a href="#L-1084"><span class="linenos">1084</span></a>
+</span><span id="L-1085"><a href="#L-1085"><span class="linenos">1085</span></a>    <span class="nd">@property</span>
+</span><span id="L-1086"><a href="#L-1086"><span class="linenos">1086</span></a>    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1087"><a href="#L-1087"><span class="linenos">1087</span></a>        <span class="k">def</span> <span class="nf">return_real</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
+</span><span id="L-1088"><a href="#L-1088"><span class="linenos">1088</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="L-1089"><a href="#L-1089"><span class="linenos">1089</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">real</span>
+</span><span id="L-1090"><a href="#L-1090"><span class="linenos">1090</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1091"><a href="#L-1091"><span class="linenos">1091</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span>
+</span><span id="L-1092"><a href="#L-1092"><span class="linenos">1092</span></a>
+</span><span id="L-1093"><a href="#L-1093"><span class="linenos">1093</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_real</span><span class="p">)</span>
+</span><span id="L-1094"><a href="#L-1094"><span class="linenos">1094</span></a>
+</span><span id="L-1095"><a href="#L-1095"><span class="linenos">1095</span></a>    <span class="nd">@property</span>
+</span><span id="L-1096"><a href="#L-1096"><span class="linenos">1096</span></a>    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-1097"><a href="#L-1097"><span class="linenos">1097</span></a>        <span class="k">def</span> <span class="nf">return_imag</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
+</span><span id="L-1098"><a href="#L-1098"><span class="linenos">1098</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="L-1099"><a href="#L-1099"><span class="linenos">1099</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">imag</span>
+</span><span id="L-1100"><a href="#L-1100"><span class="linenos">1100</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1101"><a href="#L-1101"><span class="linenos">1101</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span> <span class="o">*</span> <span class="mi">0</span>  <span class="c1"># So it stays the right type</span>
+</span><span id="L-1102"><a href="#L-1102"><span class="linenos">1102</span></a>
+</span><span id="L-1103"><a href="#L-1103"><span class="linenos">1103</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_imag</span><span class="p">)</span>
+</span><span id="L-1104"><a href="#L-1104"><span class="linenos">1104</span></a>
+</span><span id="L-1105"><a href="#L-1105"><span class="linenos">1105</span></a>
+</span><span id="L-1106"><a href="#L-1106"><span class="linenos">1106</span></a><span class="k">def</span> <span class="nf">_sort_vectors</span><span class="p">(</span><span class="n">vec_set</span><span class="p">,</span> <span class="n">ts</span><span class="p">):</span>
+</span><span id="L-1107"><a href="#L-1107"><span class="linenos">1107</span></a>    <span class="sd">&quot;&quot;&quot;Helper function used to find a set of Eigenvectors consistent over all timeslices&quot;&quot;&quot;</span>
+</span><span id="L-1108"><a href="#L-1108"><span class="linenos">1108</span></a>    <span class="n">reference_sorting</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">vec_set</span><span class="p">[</span><span class="n">ts</span><span class="p">])</span>
+</span><span id="L-1109"><a href="#L-1109"><span class="linenos">1109</span></a>    <span class="n">N</span> <span class="o">=</span> <span class="n">reference_sorting</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-1110"><a href="#L-1110"><span class="linenos">1110</span></a>    <span class="n">sorted_vec_set</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1111"><a href="#L-1111"><span class="linenos">1111</span></a>    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">vec_set</span><span class="p">)):</span>
+</span><span id="L-1112"><a href="#L-1112"><span class="linenos">1112</span></a>        <span class="k">if</span> <span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-1113"><a href="#L-1113"><span class="linenos">1113</span></a>            <span class="n">sorted_vec_set</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-1114"><a href="#L-1114"><span class="linenos">1114</span></a>        <span class="k">elif</span> <span class="ow">not</span> <span class="n">t</span> <span class="o">==</span> <span class="n">ts</span><span class="p">:</span>
+</span><span id="L-1115"><a href="#L-1115"><span class="linenos">1115</span></a>            <span class="n">perms</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">permutations</span><span class="p">([</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">)],</span> <span class="n">N</span><span class="p">)]</span>
+</span><span id="L-1116"><a href="#L-1116"><span class="linenos">1116</span></a>            <span class="n">best_score</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-1117"><a href="#L-1117"><span class="linenos">1117</span></a>            <span class="k">for</span> <span class="n">perm</span> <span class="ow">in</span> <span class="n">perms</span><span class="p">:</span>
+</span><span id="L-1118"><a href="#L-1118"><span class="linenos">1118</span></a>                <span class="n">current_score</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-1119"><a href="#L-1119"><span class="linenos">1119</span></a>                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-1120"><a href="#L-1120"><span class="linenos">1120</span></a>                    <span class="n">new_sorting</span> <span class="o">=</span> <span class="n">reference_sorting</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
+</span><span id="L-1121"><a href="#L-1121"><span class="linenos">1121</span></a>                    <span class="n">new_sorting</span><span class="p">[</span><span class="n">perm</span><span class="p">[</span><span class="n">k</span><span class="p">],</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">k</span><span class="p">]</span>
+</span><span id="L-1122"><a href="#L-1122"><span class="linenos">1122</span></a>                    <span class="n">current_score</span> <span class="o">*=</span> <span class="nb">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">det</span><span class="p">(</span><span class="n">new_sorting</span><span class="p">))</span>
+</span><span id="L-1123"><a href="#L-1123"><span class="linenos">1123</span></a>                <span class="k">if</span> <span class="n">current_score</span> <span class="o">&gt;</span> <span class="n">best_score</span><span class="p">:</span>
+</span><span id="L-1124"><a href="#L-1124"><span class="linenos">1124</span></a>                    <span class="n">best_score</span> <span class="o">=</span> <span class="n">current_score</span>
+</span><span id="L-1125"><a href="#L-1125"><span class="linenos">1125</span></a>                    <span class="n">best_perm</span> <span class="o">=</span> <span class="n">perm</span>
+</span><span id="L-1126"><a href="#L-1126"><span class="linenos">1126</span></a>            <span class="n">sorted_vec_set</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">k</span><span class="p">]</span> <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">best_perm</span><span class="p">])</span>
+</span><span id="L-1127"><a href="#L-1127"><span class="linenos">1127</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1128"><a href="#L-1128"><span class="linenos">1128</span></a>            <span class="n">sorted_vec_set</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">vec_set</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="L-1129"><a href="#L-1129"><span class="linenos">1129</span></a>
+</span><span id="L-1130"><a href="#L-1130"><span class="linenos">1130</span></a>    <span class="k">return</span> <span class="n">sorted_vec_set</span>
+</span><span id="L-1131"><a href="#L-1131"><span class="linenos">1131</span></a>
+</span><span id="L-1132"><a href="#L-1132"><span class="linenos">1132</span></a>
+</span><span id="L-1133"><a href="#L-1133"><span class="linenos">1133</span></a><span class="k">def</span> <span class="nf">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">):</span>  <span class="c1"># Just so normalization an sorting does not need to be repeated. Here we could later put in some checks</span>
+</span><span id="L-1134"><a href="#L-1134"><span class="linenos">1134</span></a>    <span class="n">sp_val</span><span class="p">,</span> <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
+</span><span id="L-1135"><a href="#L-1135"><span class="linenos">1135</span></a>    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">sp_vecs</span><span class="p">[:,</span> <span class="n">np</span><span class="o">.</span><span class="n">argsort</span><span class="p">(</span><span class="n">sp_val</span><span class="p">)[</span><span class="o">-</span><span class="n">i</span><span class="p">]]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">sp_vecs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)]</span>
+</span><span id="L-1136"><a href="#L-1136"><span class="linenos">1136</span></a>    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">v</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">v</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">G0</span> <span class="o">@</span> <span class="n">v</span><span class="p">))</span> <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">sp_vecs</span><span class="p">]</span>
+</span><span id="L-1137"><a href="#L-1137"><span class="linenos">1137</span></a>    <span class="k">return</span> <span class="n">sp_vecs</span>
+</span></pre></div>
 
         </details>
 
@@ -1361,1099 +1361,1099 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">class</span> <span class="nc">Corr</span><span class="p">:</span>
-    <span class="sd">&quot;&quot;&quot;The class for a correlator (time dependent sequence of pe.Obs).</span>
-
-<span class="sd">    Everything, this class does, can be achieved using lists or arrays of Obs.</span>
-<span class="sd">    But it is simply more convenient to have a dedicated object for correlators.</span>
-<span class="sd">    One often wants to add or multiply correlators of the same length at every timeslice and it is inconvenient</span>
-<span class="sd">    to iterate over all timeslices for every operation. This is especially true, when dealing with matrices.</span>
-
-<span class="sd">    The correlator can have two types of content: An Obs at every timeslice OR a GEVP</span>
-<span class="sd">    matrix at every timeslice. Other dependency (eg. spatial) are not supported.</span>
-
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data_input</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">prange</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize a Corr object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        data_input : list or array</span>
-<span class="sd">            list of Obs or list of arrays of Obs or array of Corrs</span>
-<span class="sd">        padding : list, optional</span>
-<span class="sd">            List with two entries where the first labels the padding</span>
-<span class="sd">            at the front of the correlator and the second the padding</span>
-<span class="sd">            at the back.</span>
-<span class="sd">        prange : list, optional</span>
-<span class="sd">            List containing the first and last timeslice of the plateau</span>
-<span class="sd">            region indentified for this correlator.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-
-            <span class="c1"># This only works, if the array fulfills the conditions below</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Incompatible array shape&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;If the input is an array, its elements must be of type pe.Corr&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only construct matrix correlator from single valued correlators&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All input Correlators must be defined over the same timeslices.&quot;</span><span class="p">)</span>
-
-            <span class="n">T</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">T</span>
-            <span class="n">N</span> <span class="o">=</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">input_as_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="nb">any</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Input ill-defined at different timeslices. Conversion leads to data loss!&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">array_at_timeslace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">array_at_timeslace</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">][</span><span class="n">t</span><span class="p">]</span>
-                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array_at_timeslace</span><span class="p">)</span>
-            <span class="n">data_input</span> <span class="o">=</span> <span class="n">input_as_list</span>
-
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">data_input</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="n">_assert_equal_properties</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data_input</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
-
-            <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">])</span> <span class="ow">and</span> <span class="nb">any</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="n">data_input</span>
-                <span class="n">noNull</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)]</span>  <span class="c1"># To check if the matrices are correct for all undefined elements</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Smearing matrices are not NxN&quot;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="p">(</span><span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">noNull</span><span class="p">])):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Items in data_input are not of identical shape.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noNull</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;data_input contains item of wrong type&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Data input was not given as list or correct array&quot;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-
-        <span class="c1"># An undefined timeslice is represented by the None object</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">+</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
-
-    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the content of timeslice idx&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">return</span> <span class="kc">None</span>
-        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">reweighted</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">bool_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">reweighted</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]])</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">1</span><span class="p">):</span>
-            <span class="k">return</span> <span class="kc">True</span>
-        <span class="k">elif</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
-            <span class="k">return</span> <span class="kc">False</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Reweighting status of correlator corrupted.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Apply the gamma method to the content of the Corr.&quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">projected</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">vector_l</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vector_r</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;We need to project the Correlator with a Vector to get a single value at each timeslice.</span>
-
-<span class="sd">        The method can use one or two vectors.</span>
-<span class="sd">        If two are specified it returns v1@G@v2 (the order might be very important.)</span>
-<span class="sd">        By default it will return the lowest source, which usually means unsmeared-unsmeared (0,0), but it does not have to</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to project a Corr, that already has N=1.&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">vector_l</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">])</span>
-        <span class="k">elif</span><span class="p">(</span><span class="n">vector_r</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-            <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_l</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
-            <span class="n">vector_r</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_r</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_r</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
-            <span class="n">vector_l</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_l</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">vector_l</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">vector_r</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Vectors are of wrong shape!&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
-                <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">)),</span> <span class="n">vector_r</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">item</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># There are no checks here yet. There are so many possible scenarios, where this can go wrong.</span>
-            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                    <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">])),</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]])</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Picks the element [i,j] from every matrix and returns a correlator containing one Obs per timeslice.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        i : int</span>
-<span class="sd">            First index to be picked.</span>
-<span class="sd">        j : int</span>
-<span class="sd">            Second index to be picked.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to pick item from projected Corr&quot;</span><span class="p">)</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">plottable</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Outputs the correlator in a plotable format.</span>
-
-<span class="sd">        Outputs three lists containing the timeslice index, the value on each</span>
-<span class="sd">        timeslice and the error on each timeslice.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only make Corr[N=1] plottable&quot;</span><span class="p">)</span>
-        <span class="n">x_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">y_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">y_err_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">x_list</span><span class="p">,</span> <span class="n">y_list</span><span class="p">,</span> <span class="n">y_err_list</span>
-
-    <span class="k">def</span> <span class="nf">symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">))</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">anti_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Anti-symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
-
-        <span class="n">test</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
-        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]):</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be anti-symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">matrix_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Symmetrizes the correlator matrices on every timeslice.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">transposed</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">G</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">G</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">G</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-            <span class="k">return</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">transposed</span><span class="p">)</span> <span class="o">+</span> <span class="bp">self</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to symmetrize a correlator matrix, that already has N=1.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">GEVP</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Solve the general eigenvalue problem on the current correlator</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        t0 : int</span>
-<span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
-<span class="sd">        ts : int</span>
-<span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
-<span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
-<span class="sd">        state : int</span>
-<span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
-<span class="sd">        sorted_list : string</span>
-<span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
-<span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
-<span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
-<span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">sorted_list</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required if sorted_list=None&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">ts</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr not defined at t0/ts&quot;</span><span class="p">)</span>
-            <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
-            <span class="n">symmetric_corr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">matrix_symmetric</span><span class="p">()</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                    <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-                    <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="p">[</span><span class="n">ts</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-
-            <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
-            <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
-            <span class="k">return</span> <span class="n">sp_vec</span>
-        <span class="k">else</span><span class="p">:</span>
-
-            <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-                            <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-
-                    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvalue&quot;</span><span class="p">:</span>
-                        <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
-                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vec</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vecs</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvector&quot;</span><span class="p">:</span>
-                <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required for the Eigenvector sorting method.&quot;</span><span class="p">)</span>
-                <span class="n">all_vecs</span> <span class="o">=</span> <span class="n">_sort_vectors</span><span class="p">(</span><span class="n">all_vecs</span><span class="p">,</span> <span class="n">ts</span><span class="p">)</span>
-                <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span><span class="p">[</span><span class="n">state</span><span class="p">]</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">all_vecs</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">all_vecs</span>
-
-    <span class="k">def</span> <span class="nf">Eigenvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Determines the eigenvalue of the GEVP by solving and projecting the correlator</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        t0 : int</span>
-<span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
-<span class="sd">        ts : int</span>
-<span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
-<span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
-<span class="sd">        state : int</span>
-<span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
-<span class="sd">        sorted_list : string</span>
-<span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
-<span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
-<span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
-<span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">vec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GEVP</span><span class="p">(</span><span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="n">ts</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="n">sorted_list</span><span class="p">)</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">projected</span><span class="p">(</span><span class="n">vec</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">Hankel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">,</span> <span class="n">periodic</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Constructs an NxN Hankel matrix</span>
-
-<span class="sd">        C(t) c(t+1) ... c(t+n-1)</span>
-<span class="sd">        C(t+1) c(t+2) ... c(t+n)</span>
-<span class="sd">        .................</span>
-<span class="sd">        C(t+(n-1)) c(t+n) ... c(t+2(n-1))</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        N : int</span>
-<span class="sd">            Dimension of the Hankel matrix</span>
-<span class="sd">        periodic : bool, optional</span>
-<span class="sd">            determines whether the matrix is extended periodically</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multi-operator Prony not implemented!&quot;</span><span class="p">)</span>
-
-        <span class="n">array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
-
-        <span class="k">def</span> <span class="nf">wrap</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-            <span class="k">while</span> <span class="n">i</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="n">i</span> <span class="o">-=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-            <span class="k">return</span> <span class="n">i</span>
-
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">periodic</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">wrap</span><span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)][</span><span class="mi">0</span><span class="p">]</span>
-                    <span class="k">elif</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">roll</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dt</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Periodically shift the correlator by dt timeslices</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dt : int</span>
-<span class="sd">            number of timeslices</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">roll</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">),</span> <span class="n">dt</span><span class="p">)))</span>
-
-    <span class="k">def</span> <span class="nf">reverse</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reverse the time ordering of the Corr&quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[::</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">thin</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Thin out a correlator to suppress correlations</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        spacing : int</span>
-<span class="sd">            Keep only every &#39;spacing&#39;th entry of the correlator</span>
-<span class="sd">        offset : int</span>
-<span class="sd">            Offset the equal spacing</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="n">offset</span> <span class="o">+</span> <span class="n">t</span><span class="p">)</span> <span class="o">%</span> <span class="n">spacing</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Correlate the correlator with another correlator or Obs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        partner : Obs or Corr</span>
-<span class="sd">            partner to correlate the correlator with.</span>
-<span class="sd">            Can either be an Obs which is correlated with all entries of the</span>
-<span class="sd">            correlator or a Corr of same length.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
-                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>  <span class="c1"># Should this include CObs?</span>
-                    <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only correlate with an Obs or a Corr.&quot;</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">weight</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reweight the correlator.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        weight : Obs</span>
-<span class="sd">            Reweighting factor. An Observable that has to be defined on a superset of the</span>
-<span class="sd">            configurations in obs[i].idl for all i.</span>
-<span class="sd">        all_configs : bool</span>
-<span class="sd">            if True, the reweighted observables are normalized by the average of</span>
-<span class="sd">            the reweighting factor on all configurations in weight.idl and not</span>
-<span class="sd">            on the configurations in obs[i].idl.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">t_slice</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">T_symmetry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">,</span> <span class="n">parity</span><span class="o">=+</span><span class="mi">1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the time symmetry average of the correlator and its partner</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        partner : Corr</span>
-<span class="sd">            Time symmetry partner of the Corr</span>
-<span class="sd">        partity : int</span>
-<span class="sd">            Parity quantum number of the correlator, can be +1 or -1</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;T partner has to be a Corr object.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">parity</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="o">+</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Parity has to be +1 or -1.&quot;</span><span class="p">)</span>
-        <span class="n">T_partner</span> <span class="o">=</span> <span class="n">parity</span> <span class="o">*</span> <span class="n">partner</span><span class="o">.</span><span class="n">reverse</span><span class="p">()</span>
-
-        <span class="n">t_slices</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">test</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">T_partner</span><span class="p">)</span>
-        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">t_slice</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">5</span><span class="p">):</span>
-                    <span class="n">t_slices</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">t_slices</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;T symmetry partners do not agree within 5 sigma on time slices &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">t_slices</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">+</span> <span class="n">T_partner</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
-
-    <span class="k">def</span> <span class="nf">deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the first derivative of the correlator with respect to x0.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            decides which definition of the finite differences derivative is used.</span>
-<span class="sd">            Available choice: symmetric, forward, backward, improved, default: symmetric</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;forward&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;backward&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">second_deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the second derivative of the correlator with respect to x0.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            decides which definition of the finite differences derivative is used.</span>
-<span class="sd">            Available choice: symmetric, improved, default: symmetric</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">30</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">m_eff</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s1">&#39;log&#39;</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns the effective mass of the correlator as correlator object</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            log : uses the standard effective mass log(C(t) / C(t+1))</span>
-<span class="sd">            cosh, periodic : Use periodicitiy of the correlator by solving C(t) / C(t+1) = cosh(m * (t - T/2)) / cosh(m * (t + 1 - T/2)) for m.</span>
-<span class="sd">            sinh : Use anti-periodicitiy of the correlator by solving C(t) / C(t+1) = sinh(m * (t - T/2)) / sinh(m * (t + 1 - T/2)) for m.</span>
-<span class="sd">            See, e.g., arXiv:1205.5380</span>
-<span class="sd">            arccosh : Uses the explicit form of the symmetrized correlator (not recommended)</span>
-<span class="sd">        guess : float</span>
-<span class="sd">            guess for the root finder, only relevant for the root variant</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator must be projected before getting m_eff&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;log&#39;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
-
-            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
-
-        <span class="k">elif</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">,</span> <span class="s1">&#39;sinh&#39;</span><span class="p">]:</span>
-            <span class="k">if</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">]:</span>
-                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">cosh</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sinh</span>
-
-            <span class="k">def</span> <span class="nf">root_function</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">/</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">-</span> <span class="n">d</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="c1"># Fill the two timeslices in the middle of the lattice with their predecessors</span>
-                <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;sinh&#39;</span> <span class="ow">and</span> <span class="n">t</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">find_root</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">root_function</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="n">guess</span><span class="p">)))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
-
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;arccosh&#39;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;m_eff is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown variant.&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">fitrange</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Fits function to the data</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        function : obj</span>
-<span class="sd">            function to fit to the data. See fits.least_squares for details.</span>
-<span class="sd">        fitrange : list</span>
-<span class="sd">            Two element list containing the timeslices on which the fit is supposed to start and stop.</span>
-<span class="sd">            Caution: This range is inclusive as opposed to standard python indexing.</span>
-<span class="sd">            `fitrange=[4, 6]` corresponds to the three entries 4, 5 and 6.</span>
-<span class="sd">            If not specified, self.prange or all timeslices are used.</span>
-<span class="sd">        silent : bool</span>
-<span class="sd">            Decides whether output is printed to the standard output.</span>
-<span class="sd">        &#39;&#39;&#39;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before fitting&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">fitrange</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-                <span class="n">fitrange</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">fitrange</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fitrange</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to be a list with two elements&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">fitrange</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to have exactly two elements [fit_start, fit_stop]&quot;</span><span class="p">)</span>
-
-        <span class="n">xs</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">ys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">xs</span><span class="p">,</span> <span class="n">ys</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">result</span>
-
-    <span class="k">def</span> <span class="nf">plateau</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">plateau_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fit&quot;</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Extract a plateau value from a Corr object</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        plateau_range : list</span>
-<span class="sd">            list with two entries, indicating the first and the last timeslice</span>
-<span class="sd">            of the plateau region.</span>
-<span class="sd">        method : str</span>
-<span class="sd">            method to extract the plateau.</span>
-<span class="sd">                &#39;fit&#39; fits a constant to the plateau region</span>
-<span class="sd">                &#39;avg&#39;, &#39;average&#39; or &#39;mean&#39; just average over the given timeslices.</span>
-<span class="sd">        auto_gamma : bool</span>
-<span class="sd">            apply gamma_method with default parameters to the Corr. Defaults to None</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">plateau_range</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-                <span class="n">plateau_range</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;no plateau range provided&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before getting a plateau.&quot;</span><span class="p">)</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;plateau is undefined at all timeslices in plateaurange.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;fit&quot;</span><span class="p">:</span>
-            <span class="k">def</span> <span class="nf">const_func</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">t</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">const_func</span><span class="p">,</span> <span class="n">plateau_range</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">elif</span> <span class="n">method</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;avg&quot;</span><span class="p">,</span> <span class="s2">&quot;average&quot;</span><span class="p">,</span> <span class="s2">&quot;mean&quot;</span><span class="p">]:</span>
-            <span class="n">returnvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">([</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
-            <span class="k">return</span> <span class="n">returnvalue</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsupported plateau method: &quot;</span> <span class="o">+</span> <span class="n">method</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">set_prange</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prange</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Sets the attribute prange of the Corr object.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">prange</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;prange must be a list or array with two values&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">((</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">))</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="nb">int</span><span class="p">))):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must be integers&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must define a range in the interval 0,T&quot;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
-        <span class="k">return</span>
-
-    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">y_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">plateau</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fit_res</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ylabel</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plots the correlator using the tag of the correlator as label if available.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        x_range : list</span>
-<span class="sd">            list of two values, determining the range of the x-axis e.g. [4, 8]</span>
-<span class="sd">        comp : Corr or list of Corr</span>
-<span class="sd">            Correlator or list of correlators which are plotted for comparison.</span>
-<span class="sd">            The tags of these correlators are used as labels if available.</span>
-<span class="sd">        logscale : bool</span>
-<span class="sd">            Sets y-axis to logscale</span>
-<span class="sd">        plateau : Obs</span>
-<span class="sd">            Plateau value to be visualized in the figure</span>
-<span class="sd">        fit_res : Fit_result</span>
-<span class="sd">            Fit_result object to be visualized</span>
-<span class="sd">        ylabel : str</span>
-<span class="sd">            Label for the y-axis</span>
-<span class="sd">        save : str</span>
-<span class="sd">            path to file in which the figure should be saved</span>
-<span class="sd">        auto_gamma : bool</span>
-<span class="sd">            Apply the gamma method with standard parameters to all correlators and plateau values before plotting.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before plotting&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-
-        <span class="k">if</span> <span class="n">x_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">x_range</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-
-        <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-        <span class="n">ax1</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
-
-        <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">logscale</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">y_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">y_min</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-                    <span class="n">y_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-                    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">([</span><span class="n">y_min</span> <span class="o">-</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">),</span> <span class="n">y_max</span> <span class="o">+</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">)])</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">pass</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">y_range</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">comp</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="p">(</span><span class="n">Corr</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
-                <span class="k">for</span> <span class="n">corr</span> <span class="ow">in</span> <span class="n">comp</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="p">[</span><span class="n">comp</span><span class="p">]:</span>
-                    <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-                        <span class="n">corr</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-                    <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="n">corr</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
-                    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">corr</span><span class="o">.</span><span class="n">tag</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;comp&#39; must be a correlator or a list of correlators.&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">plateau</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">plateau</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-                    <span class="n">plateau</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.6</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">plateau</span><span class="p">))</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">axhspan</span><span class="p">(</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;plateau&#39; must be an Obs&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">fit_res</span><span class="p">:</span>
-            <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">)</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span>
-                     <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_function</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span>
-                     <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
-
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ylabel</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="n">ylabel</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">,</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">])</span>
-
-        <span class="n">handles</span><span class="p">,</span> <span class="n">labels</span> <span class="o">=</span> <span class="n">ax1</span><span class="o">.</span><span class="n">get_legend_handles_labels</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">labels</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-        <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">save</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;save&#39; has to be a string.&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">spaghetti_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Produces a spaghetti plot of the correlator suited to monitor exceptional configurations.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        logscale : bool</span>
-<span class="sd">            Determines whether the scale of the y-axis is logarithmic or standard.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator needs to be projected first.&quot;</span><span class="p">)</span>
-
-        <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]))</span>
-        <span class="n">x0_vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">n</span> <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span><span class="o">.</span><span class="n">T</span>
-
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">ax</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
-                <span class="n">ax</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x0_vals</span><span class="p">,</span> <span class="n">dat</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
-
-            <span class="k">if</span> <span class="n">logscale</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-                <span class="n">ax</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
-
-            <span class="n">ax</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Dumps the Corr into a file of chosen type</span>
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        filename : str</span>
-<span class="sd">            Name of the file to be saved.</span>
-<span class="sd">        datatype : str</span>
-<span class="sd">            Format of the exported file. Supported formats include</span>
-<span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
-<span class="sd">        path : str</span>
-<span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
-            <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
-            <span class="n">dump_to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_name</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
-            <span class="n">dump_object</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">(</span><span class="nb">range</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
-        <span class="n">content_string</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
-
-        <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Corr T=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; N=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>  <span class="c1"># +&quot; filled with&quot;+ str(type(self.content[0][0])) there should be a good solution here</span>
-
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Description: &quot;</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">content_string</span>
-
-        <span class="k">if</span> <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-            <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
-        <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;x0/a</span><span class="se">\t</span><span class="s1">Corr(x0/a)</span><span class="se">\n</span><span class="s1">------------------</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">sub_corr</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]]):</span>
-            <span class="k">if</span> <span class="n">sub_corr</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-                <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">sub_corr</span><span class="p">:</span>
-                    <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">element</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-                <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">return</span> <span class="n">content_string</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
-
-    <span class="c1"># We define the basic operations, that can be performed with correlators.</span>
-    <span class="c1"># While */+- get defined here, they only work for Corr*Obs and not Obs*Corr.</span>
-    <span class="c1"># This is because Obs*Corr checks Obs.__mul__ first and does not catch an exception.</span>
-    <span class="c1"># One could try and tell Obs to check if the y in __mul__ is a Corr and</span>
-
-    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">)):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Addition of Corrs with different shape&quot;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
-                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr + wrong type&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
-                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr * wrong type&quot;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="k">continue</span>
-                <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Division returns completely undefined correlator&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">is_zero</span><span class="p">():</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="n">y</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
-                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Corr / wrong type&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="o">-</span><span class="mf">1.</span> <span class="o">*</span> <span class="n">item</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="p">(</span><span class="o">-</span><span class="n">y</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="o">**</span><span class="n">y</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Type of exponent not supported&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="c1"># The numpy functions:</span>
-    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">**</span><span class="mf">0.5</span>
-
-    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_apply_func_to_corr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">func</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">func</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">continue</span>
-            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-        <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Operation returns undefined correlator&#39;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsin</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccos</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctan</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctanh</span><span class="p">)</span>
-
-    <span class="c1"># Right hand side operations (require tweak in main module to work)</span>
-    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">)</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">def</span> <span class="nf">return_real</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">real</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span>
-
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_real</span><span class="p">)</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">def</span> <span class="nf">return_imag</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">imag</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">obs_OR_cobs</span> <span class="o">*</span> <span class="mi">0</span>  <span class="c1"># So it stays the right type</span>
-
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_imag</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr-13"><a href="#Corr-13"><span class="linenos">  13</span></a><span class="k">class</span> <span class="nc">Corr</span><span class="p">:</span>
+</span><span id="Corr-14"><a href="#Corr-14"><span class="linenos">  14</span></a>    <span class="sd">&quot;&quot;&quot;The class for a correlator (time dependent sequence of pe.Obs).</span>
+</span><span id="Corr-15"><a href="#Corr-15"><span class="linenos">  15</span></a>
+</span><span id="Corr-16"><a href="#Corr-16"><span class="linenos">  16</span></a><span class="sd">    Everything, this class does, can be achieved using lists or arrays of Obs.</span>
+</span><span id="Corr-17"><a href="#Corr-17"><span class="linenos">  17</span></a><span class="sd">    But it is simply more convenient to have a dedicated object for correlators.</span>
+</span><span id="Corr-18"><a href="#Corr-18"><span class="linenos">  18</span></a><span class="sd">    One often wants to add or multiply correlators of the same length at every timeslice and it is inconvenient</span>
+</span><span id="Corr-19"><a href="#Corr-19"><span class="linenos">  19</span></a><span class="sd">    to iterate over all timeslices for every operation. This is especially true, when dealing with matrices.</span>
+</span><span id="Corr-20"><a href="#Corr-20"><span class="linenos">  20</span></a>
+</span><span id="Corr-21"><a href="#Corr-21"><span class="linenos">  21</span></a><span class="sd">    The correlator can have two types of content: An Obs at every timeslice OR a GEVP</span>
+</span><span id="Corr-22"><a href="#Corr-22"><span class="linenos">  22</span></a><span class="sd">    matrix at every timeslice. Other dependency (eg. spatial) are not supported.</span>
+</span><span id="Corr-23"><a href="#Corr-23"><span class="linenos">  23</span></a>
+</span><span id="Corr-24"><a href="#Corr-24"><span class="linenos">  24</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="Corr-25"><a href="#Corr-25"><span class="linenos">  25</span></a>
+</span><span id="Corr-26"><a href="#Corr-26"><span class="linenos">  26</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data_input</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">prange</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-27"><a href="#Corr-27"><span class="linenos">  27</span></a>        <span class="sd">&quot;&quot;&quot; Initialize a Corr object.</span>
+</span><span id="Corr-28"><a href="#Corr-28"><span class="linenos">  28</span></a>
+</span><span id="Corr-29"><a href="#Corr-29"><span class="linenos">  29</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-30"><a href="#Corr-30"><span class="linenos">  30</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-31"><a href="#Corr-31"><span class="linenos">  31</span></a><span class="sd">        data_input : list or array</span>
+</span><span id="Corr-32"><a href="#Corr-32"><span class="linenos">  32</span></a><span class="sd">            list of Obs or list of arrays of Obs or array of Corrs</span>
+</span><span id="Corr-33"><a href="#Corr-33"><span class="linenos">  33</span></a><span class="sd">        padding : list, optional</span>
+</span><span id="Corr-34"><a href="#Corr-34"><span class="linenos">  34</span></a><span class="sd">            List with two entries where the first labels the padding</span>
+</span><span id="Corr-35"><a href="#Corr-35"><span class="linenos">  35</span></a><span class="sd">            at the front of the correlator and the second the padding</span>
+</span><span id="Corr-36"><a href="#Corr-36"><span class="linenos">  36</span></a><span class="sd">            at the back.</span>
+</span><span id="Corr-37"><a href="#Corr-37"><span class="linenos">  37</span></a><span class="sd">        prange : list, optional</span>
+</span><span id="Corr-38"><a href="#Corr-38"><span class="linenos">  38</span></a><span class="sd">            List containing the first and last timeslice of the plateau</span>
+</span><span id="Corr-39"><a href="#Corr-39"><span class="linenos">  39</span></a><span class="sd">            region indentified for this correlator.</span>
+</span><span id="Corr-40"><a href="#Corr-40"><span class="linenos">  40</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-41"><a href="#Corr-41"><span class="linenos">  41</span></a>
+</span><span id="Corr-42"><a href="#Corr-42"><span class="linenos">  42</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Corr-43"><a href="#Corr-43"><span class="linenos">  43</span></a>
+</span><span id="Corr-44"><a href="#Corr-44"><span class="linenos">  44</span></a>            <span class="c1"># This only works, if the array fulfills the conditions below</span>
+</span><span id="Corr-45"><a href="#Corr-45"><span class="linenos">  45</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr-46"><a href="#Corr-46"><span class="linenos">  46</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Incompatible array shape&quot;</span><span class="p">)</span>
+</span><span id="Corr-47"><a href="#Corr-47"><span class="linenos">  47</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr-48"><a href="#Corr-48"><span class="linenos">  48</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;If the input is an array, its elements must be of type pe.Corr&quot;</span><span class="p">)</span>
+</span><span id="Corr-49"><a href="#Corr-49"><span class="linenos">  49</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr-50"><a href="#Corr-50"><span class="linenos">  50</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only construct matrix correlator from single valued correlators&quot;</span><span class="p">)</span>
+</span><span id="Corr-51"><a href="#Corr-51"><span class="linenos">  51</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-52"><a href="#Corr-52"><span class="linenos">  52</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All input Correlators must be defined over the same timeslices.&quot;</span><span class="p">)</span>
+</span><span id="Corr-53"><a href="#Corr-53"><span class="linenos">  53</span></a>
+</span><span id="Corr-54"><a href="#Corr-54"><span class="linenos">  54</span></a>            <span class="n">T</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr-55"><a href="#Corr-55"><span class="linenos">  55</span></a>            <span class="n">N</span> <span class="o">=</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr-56"><a href="#Corr-56"><span class="linenos">  56</span></a>            <span class="n">input_as_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-57"><a href="#Corr-57"><span class="linenos">  57</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-58"><a href="#Corr-58"><span class="linenos">  58</span></a>                <span class="k">if</span> <span class="nb">any</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr-59"><a href="#Corr-59"><span class="linenos">  59</span></a>                    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr-60"><a href="#Corr-60"><span class="linenos">  60</span></a>                        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Input ill-defined at different timeslices. Conversion leads to data loss!&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr-61"><a href="#Corr-61"><span class="linenos">  61</span></a>                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-62"><a href="#Corr-62"><span class="linenos">  62</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-63"><a href="#Corr-63"><span class="linenos">  63</span></a>                    <span class="n">array_at_timeslace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
+</span><span id="Corr-64"><a href="#Corr-64"><span class="linenos">  64</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-65"><a href="#Corr-65"><span class="linenos">  65</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-66"><a href="#Corr-66"><span class="linenos">  66</span></a>                            <span class="n">array_at_timeslace</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">][</span><span class="n">t</span><span class="p">]</span>
+</span><span id="Corr-67"><a href="#Corr-67"><span class="linenos">  67</span></a>                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array_at_timeslace</span><span class="p">)</span>
+</span><span id="Corr-68"><a href="#Corr-68"><span class="linenos">  68</span></a>            <span class="n">data_input</span> <span class="o">=</span> <span class="n">input_as_list</span>
+</span><span id="Corr-69"><a href="#Corr-69"><span class="linenos">  69</span></a>
+</span><span id="Corr-70"><a href="#Corr-70"><span class="linenos">  70</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr-71"><a href="#Corr-71"><span class="linenos">  71</span></a>
+</span><span id="Corr-72"><a href="#Corr-72"><span class="linenos">  72</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="Corr-73"><a href="#Corr-73"><span class="linenos">  73</span></a>                <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">data_input</span><span class="p">)</span>
+</span><span id="Corr-74"><a href="#Corr-74"><span class="linenos">  74</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
+</span><span id="Corr-75"><a href="#Corr-75"><span class="linenos">  75</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="Corr-76"><a href="#Corr-76"><span class="linenos">  76</span></a>                <span class="n">_assert_equal_properties</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data_input</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
+</span><span id="Corr-77"><a href="#Corr-77"><span class="linenos">  77</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
+</span><span id="Corr-78"><a href="#Corr-78"><span class="linenos">  78</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="Corr-79"><a href="#Corr-79"><span class="linenos">  79</span></a>
+</span><span id="Corr-80"><a href="#Corr-80"><span class="linenos">  80</span></a>            <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">])</span> <span class="ow">and</span> <span class="nb">any</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="Corr-81"><a href="#Corr-81"><span class="linenos">  81</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="n">data_input</span>
+</span><span id="Corr-82"><a href="#Corr-82"><span class="linenos">  82</span></a>                <span class="n">noNull</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)]</span>  <span class="c1"># To check if the matrices are correct for all undefined elements</span>
+</span><span id="Corr-83"><a href="#Corr-83"><span class="linenos">  83</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr-84"><a href="#Corr-84"><span class="linenos">  84</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr-85"><a href="#Corr-85"><span class="linenos">  85</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Smearing matrices are not NxN&quot;</span><span class="p">)</span>
+</span><span id="Corr-86"><a href="#Corr-86"><span class="linenos">  86</span></a>                <span class="k">if</span> <span class="p">(</span><span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">noNull</span><span class="p">])):</span>
+</span><span id="Corr-87"><a href="#Corr-87"><span class="linenos">  87</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Items in data_input are not of identical shape.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noNull</span><span class="p">))</span>
+</span><span id="Corr-88"><a href="#Corr-88"><span class="linenos">  88</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-89"><a href="#Corr-89"><span class="linenos">  89</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;data_input contains item of wrong type&quot;</span><span class="p">)</span>
+</span><span id="Corr-90"><a href="#Corr-90"><span class="linenos">  90</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-91"><a href="#Corr-91"><span class="linenos">  91</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Data input was not given as list or correct array&quot;</span><span class="p">)</span>
+</span><span id="Corr-92"><a href="#Corr-92"><span class="linenos">  92</span></a>
+</span><span id="Corr-93"><a href="#Corr-93"><span class="linenos">  93</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Corr-94"><a href="#Corr-94"><span class="linenos">  94</span></a>
+</span><span id="Corr-95"><a href="#Corr-95"><span class="linenos">  95</span></a>        <span class="c1"># An undefined timeslice is represented by the None object</span>
+</span><span id="Corr-96"><a href="#Corr-96"><span class="linenos">  96</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">+</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="Corr-97"><a href="#Corr-97"><span class="linenos">  97</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span>
+</span><span id="Corr-98"><a href="#Corr-98"><span class="linenos">  98</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
+</span><span id="Corr-99"><a href="#Corr-99"><span class="linenos">  99</span></a>
+</span><span id="Corr-100"><a href="#Corr-100"><span class="linenos"> 100</span></a>    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
+</span><span id="Corr-101"><a href="#Corr-101"><span class="linenos"> 101</span></a>        <span class="sd">&quot;&quot;&quot;Return the content of timeslice idx&quot;&quot;&quot;</span>
+</span><span id="Corr-102"><a href="#Corr-102"><span class="linenos"> 102</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-103"><a href="#Corr-103"><span class="linenos"> 103</span></a>            <span class="k">return</span> <span class="kc">None</span>
+</span><span id="Corr-104"><a href="#Corr-104"><span class="linenos"> 104</span></a>        <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-105"><a href="#Corr-105"><span class="linenos"> 105</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr-106"><a href="#Corr-106"><span class="linenos"> 106</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-107"><a href="#Corr-107"><span class="linenos"> 107</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
+</span><span id="Corr-108"><a href="#Corr-108"><span class="linenos"> 108</span></a>
+</span><span id="Corr-109"><a href="#Corr-109"><span class="linenos"> 109</span></a>    <span class="nd">@property</span>
+</span><span id="Corr-110"><a href="#Corr-110"><span class="linenos"> 110</span></a>    <span class="k">def</span> <span class="nf">reweighted</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-111"><a href="#Corr-111"><span class="linenos"> 111</span></a>        <span class="n">bool_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">reweighted</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]])</span>
+</span><span id="Corr-112"><a href="#Corr-112"><span class="linenos"> 112</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-113"><a href="#Corr-113"><span class="linenos"> 113</span></a>            <span class="k">return</span> <span class="kc">True</span>
+</span><span id="Corr-114"><a href="#Corr-114"><span class="linenos"> 114</span></a>        <span class="k">elif</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">bool_array</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="Corr-115"><a href="#Corr-115"><span class="linenos"> 115</span></a>            <span class="k">return</span> <span class="kc">False</span>
+</span><span id="Corr-116"><a href="#Corr-116"><span class="linenos"> 116</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-117"><a href="#Corr-117"><span class="linenos"> 117</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Reweighting status of correlator corrupted.&quot;</span><span class="p">)</span>
+</span><span id="Corr-118"><a href="#Corr-118"><span class="linenos"> 118</span></a>
+</span><span id="Corr-119"><a href="#Corr-119"><span class="linenos"> 119</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr-120"><a href="#Corr-120"><span class="linenos"> 120</span></a>        <span class="sd">&quot;&quot;&quot;Apply the gamma method to the content of the Corr.&quot;&quot;&quot;</span>
+</span><span id="Corr-121"><a href="#Corr-121"><span class="linenos"> 121</span></a>        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
+</span><span id="Corr-122"><a href="#Corr-122"><span class="linenos"> 122</span></a>            <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-123"><a href="#Corr-123"><span class="linenos"> 123</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-124"><a href="#Corr-124"><span class="linenos"> 124</span></a>                    <span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="Corr-125"><a href="#Corr-125"><span class="linenos"> 125</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-126"><a href="#Corr-126"><span class="linenos"> 126</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-127"><a href="#Corr-127"><span class="linenos"> 127</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-128"><a href="#Corr-128"><span class="linenos"> 128</span></a>                            <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="Corr-129"><a href="#Corr-129"><span class="linenos"> 129</span></a>
+</span><span id="Corr-130"><a href="#Corr-130"><span class="linenos"> 130</span></a>    <span class="k">def</span> <span class="nf">projected</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">vector_l</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vector_r</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr-131"><a href="#Corr-131"><span class="linenos"> 131</span></a>        <span class="sd">&quot;&quot;&quot;We need to project the Correlator with a Vector to get a single value at each timeslice.</span>
+</span><span id="Corr-132"><a href="#Corr-132"><span class="linenos"> 132</span></a>
+</span><span id="Corr-133"><a href="#Corr-133"><span class="linenos"> 133</span></a><span class="sd">        The method can use one or two vectors.</span>
+</span><span id="Corr-134"><a href="#Corr-134"><span class="linenos"> 134</span></a><span class="sd">        If two are specified it returns v1@G@v2 (the order might be very important.)</span>
+</span><span id="Corr-135"><a href="#Corr-135"><span class="linenos"> 135</span></a><span class="sd">        By default it will return the lowest source, which usually means unsmeared-unsmeared (0,0), but it does not have to</span>
+</span><span id="Corr-136"><a href="#Corr-136"><span class="linenos"> 136</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-137"><a href="#Corr-137"><span class="linenos"> 137</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-138"><a href="#Corr-138"><span class="linenos"> 138</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to project a Corr, that already has N=1.&quot;</span><span class="p">)</span>
+</span><span id="Corr-139"><a href="#Corr-139"><span class="linenos"> 139</span></a>
+</span><span id="Corr-140"><a href="#Corr-140"><span class="linenos"> 140</span></a>        <span class="k">if</span> <span class="n">vector_l</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-141"><a href="#Corr-141"><span class="linenos"> 141</span></a>            <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">])</span>
+</span><span id="Corr-142"><a href="#Corr-142"><span class="linenos"> 142</span></a>        <span class="k">elif</span><span class="p">(</span><span class="n">vector_r</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-143"><a href="#Corr-143"><span class="linenos"> 143</span></a>            <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span>
+</span><span id="Corr-144"><a href="#Corr-144"><span class="linenos"> 144</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr-145"><a href="#Corr-145"><span class="linenos"> 145</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_l</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr-146"><a href="#Corr-146"><span class="linenos"> 146</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
+</span><span id="Corr-147"><a href="#Corr-147"><span class="linenos"> 147</span></a>            <span class="n">vector_r</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_r</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr-148"><a href="#Corr-148"><span class="linenos"> 148</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr-149"><a href="#Corr-149"><span class="linenos"> 149</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_r</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr-150"><a href="#Corr-150"><span class="linenos"> 150</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
+</span><span id="Corr-151"><a href="#Corr-151"><span class="linenos"> 151</span></a>            <span class="n">vector_l</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_l</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr-152"><a href="#Corr-152"><span class="linenos"> 152</span></a>
+</span><span id="Corr-153"><a href="#Corr-153"><span class="linenos"> 153</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr-154"><a href="#Corr-154"><span class="linenos"> 154</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">vector_l</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">vector_r</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,):</span>
+</span><span id="Corr-155"><a href="#Corr-155"><span class="linenos"> 155</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Vectors are of wrong shape!&quot;</span><span class="p">)</span>
+</span><span id="Corr-156"><a href="#Corr-156"><span class="linenos"> 156</span></a>            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
+</span><span id="Corr-157"><a href="#Corr-157"><span class="linenos"> 157</span></a>                <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">)),</span> <span class="n">vector_r</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">)</span>
+</span><span id="Corr-158"><a href="#Corr-158"><span class="linenos"> 158</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">item</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-159"><a href="#Corr-159"><span class="linenos"> 159</span></a>
+</span><span id="Corr-160"><a href="#Corr-160"><span class="linenos"> 160</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-161"><a href="#Corr-161"><span class="linenos"> 161</span></a>            <span class="c1"># There are no checks here yet. There are so many possible scenarios, where this can go wrong.</span>
+</span><span id="Corr-162"><a href="#Corr-162"><span class="linenos"> 162</span></a>            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
+</span><span id="Corr-163"><a href="#Corr-163"><span class="linenos"> 163</span></a>                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-164"><a href="#Corr-164"><span class="linenos"> 164</span></a>                    <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">])),</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr-165"><a href="#Corr-165"><span class="linenos"> 165</span></a>
+</span><span id="Corr-166"><a href="#Corr-166"><span class="linenos"> 166</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]])</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)]</span>
+</span><span id="Corr-167"><a href="#Corr-167"><span class="linenos"> 167</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="Corr-168"><a href="#Corr-168"><span class="linenos"> 168</span></a>
+</span><span id="Corr-169"><a href="#Corr-169"><span class="linenos"> 169</span></a>    <span class="k">def</span> <span class="nf">item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">):</span>
+</span><span id="Corr-170"><a href="#Corr-170"><span class="linenos"> 170</span></a>        <span class="sd">&quot;&quot;&quot;Picks the element [i,j] from every matrix and returns a correlator containing one Obs per timeslice.</span>
+</span><span id="Corr-171"><a href="#Corr-171"><span class="linenos"> 171</span></a>
+</span><span id="Corr-172"><a href="#Corr-172"><span class="linenos"> 172</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-173"><a href="#Corr-173"><span class="linenos"> 173</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-174"><a href="#Corr-174"><span class="linenos"> 174</span></a><span class="sd">        i : int</span>
+</span><span id="Corr-175"><a href="#Corr-175"><span class="linenos"> 175</span></a><span class="sd">            First index to be picked.</span>
+</span><span id="Corr-176"><a href="#Corr-176"><span class="linenos"> 176</span></a><span class="sd">        j : int</span>
+</span><span id="Corr-177"><a href="#Corr-177"><span class="linenos"> 177</span></a><span class="sd">            Second index to be picked.</span>
+</span><span id="Corr-178"><a href="#Corr-178"><span class="linenos"> 178</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-179"><a href="#Corr-179"><span class="linenos"> 179</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-180"><a href="#Corr-180"><span class="linenos"> 180</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to pick item from projected Corr&quot;</span><span class="p">)</span>
+</span><span id="Corr-181"><a href="#Corr-181"><span class="linenos"> 181</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-182"><a href="#Corr-182"><span class="linenos"> 182</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="Corr-183"><a href="#Corr-183"><span class="linenos"> 183</span></a>
+</span><span id="Corr-184"><a href="#Corr-184"><span class="linenos"> 184</span></a>    <span class="k">def</span> <span class="nf">plottable</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-185"><a href="#Corr-185"><span class="linenos"> 185</span></a>        <span class="sd">&quot;&quot;&quot;Outputs the correlator in a plotable format.</span>
+</span><span id="Corr-186"><a href="#Corr-186"><span class="linenos"> 186</span></a>
+</span><span id="Corr-187"><a href="#Corr-187"><span class="linenos"> 187</span></a><span class="sd">        Outputs three lists containing the timeslice index, the value on each</span>
+</span><span id="Corr-188"><a href="#Corr-188"><span class="linenos"> 188</span></a><span class="sd">        timeslice and the error on each timeslice.</span>
+</span><span id="Corr-189"><a href="#Corr-189"><span class="linenos"> 189</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-190"><a href="#Corr-190"><span class="linenos"> 190</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-191"><a href="#Corr-191"><span class="linenos"> 191</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only make Corr[N=1] plottable&quot;</span><span class="p">)</span>
+</span><span id="Corr-192"><a href="#Corr-192"><span class="linenos"> 192</span></a>        <span class="n">x_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr-193"><a href="#Corr-193"><span class="linenos"> 193</span></a>        <span class="n">y_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr-194"><a href="#Corr-194"><span class="linenos"> 194</span></a>        <span class="n">y_err_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr-195"><a href="#Corr-195"><span class="linenos"> 195</span></a>
+</span><span id="Corr-196"><a href="#Corr-196"><span class="linenos"> 196</span></a>        <span class="k">return</span> <span class="n">x_list</span><span class="p">,</span> <span class="n">y_list</span><span class="p">,</span> <span class="n">y_err_list</span>
+</span><span id="Corr-197"><a href="#Corr-197"><span class="linenos"> 197</span></a>
+</span><span id="Corr-198"><a href="#Corr-198"><span class="linenos"> 198</span></a>    <span class="k">def</span> <span class="nf">symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-199"><a href="#Corr-199"><span class="linenos"> 199</span></a>        <span class="sd">&quot;&quot;&quot; Symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
+</span><span id="Corr-200"><a href="#Corr-200"><span class="linenos"> 200</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr-201"><a href="#Corr-201"><span class="linenos"> 201</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
+</span><span id="Corr-202"><a href="#Corr-202"><span class="linenos"> 202</span></a>
+</span><span id="Corr-203"><a href="#Corr-203"><span class="linenos"> 203</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">))</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr-204"><a href="#Corr-204"><span class="linenos"> 204</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr-205"><a href="#Corr-205"><span class="linenos"> 205</span></a>
+</span><span id="Corr-206"><a href="#Corr-206"><span class="linenos"> 206</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="Corr-207"><a href="#Corr-207"><span class="linenos"> 207</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-208"><a href="#Corr-208"><span class="linenos"> 208</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-209"><a href="#Corr-209"><span class="linenos"> 209</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-210"><a href="#Corr-210"><span class="linenos"> 210</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-211"><a href="#Corr-211"><span class="linenos"> 211</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
+</span><span id="Corr-212"><a href="#Corr-212"><span class="linenos"> 212</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-213"><a href="#Corr-213"><span class="linenos"> 213</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
+</span><span id="Corr-214"><a href="#Corr-214"><span class="linenos"> 214</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-215"><a href="#Corr-215"><span class="linenos"> 215</span></a>
+</span><span id="Corr-216"><a href="#Corr-216"><span class="linenos"> 216</span></a>    <span class="k">def</span> <span class="nf">anti_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-217"><a href="#Corr-217"><span class="linenos"> 217</span></a>        <span class="sd">&quot;&quot;&quot;Anti-symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
+</span><span id="Corr-218"><a href="#Corr-218"><span class="linenos"> 218</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr-219"><a href="#Corr-219"><span class="linenos"> 219</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
+</span><span id="Corr-220"><a href="#Corr-220"><span class="linenos"> 220</span></a>
+</span><span id="Corr-221"><a href="#Corr-221"><span class="linenos"> 221</span></a>        <span class="n">test</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="Corr-222"><a href="#Corr-222"><span class="linenos"> 222</span></a>        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr-223"><a href="#Corr-223"><span class="linenos"> 223</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]):</span>
+</span><span id="Corr-224"><a href="#Corr-224"><span class="linenos"> 224</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be anti-symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr-225"><a href="#Corr-225"><span class="linenos"> 225</span></a>
+</span><span id="Corr-226"><a href="#Corr-226"><span class="linenos"> 226</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="Corr-227"><a href="#Corr-227"><span class="linenos"> 227</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-228"><a href="#Corr-228"><span class="linenos"> 228</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-229"><a href="#Corr-229"><span class="linenos"> 229</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-230"><a href="#Corr-230"><span class="linenos"> 230</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-231"><a href="#Corr-231"><span class="linenos"> 231</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
+</span><span id="Corr-232"><a href="#Corr-232"><span class="linenos"> 232</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-233"><a href="#Corr-233"><span class="linenos"> 233</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
+</span><span id="Corr-234"><a href="#Corr-234"><span class="linenos"> 234</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-235"><a href="#Corr-235"><span class="linenos"> 235</span></a>
+</span><span id="Corr-236"><a href="#Corr-236"><span class="linenos"> 236</span></a>    <span class="k">def</span> <span class="nf">matrix_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-237"><a href="#Corr-237"><span class="linenos"> 237</span></a>        <span class="sd">&quot;&quot;&quot;Symmetrizes the correlator matrices on every timeslice.&quot;&quot;&quot;</span>
+</span><span id="Corr-238"><a href="#Corr-238"><span class="linenos"> 238</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-239"><a href="#Corr-239"><span class="linenos"> 239</span></a>            <span class="n">transposed</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">G</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">G</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">G</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-240"><a href="#Corr-240"><span class="linenos"> 240</span></a>            <span class="k">return</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">transposed</span><span class="p">)</span> <span class="o">+</span> <span class="bp">self</span><span class="p">)</span>
+</span><span id="Corr-241"><a href="#Corr-241"><span class="linenos"> 241</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-242"><a href="#Corr-242"><span class="linenos"> 242</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to symmetrize a correlator matrix, that already has N=1.&quot;</span><span class="p">)</span>
+</span><span id="Corr-243"><a href="#Corr-243"><span class="linenos"> 243</span></a>
+</span><span id="Corr-244"><a href="#Corr-244"><span class="linenos"> 244</span></a>    <span class="k">def</span> <span class="nf">GEVP</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-245"><a href="#Corr-245"><span class="linenos"> 245</span></a>        <span class="sd">&quot;&quot;&quot;Solve the general eigenvalue problem on the current correlator</span>
+</span><span id="Corr-246"><a href="#Corr-246"><span class="linenos"> 246</span></a>
+</span><span id="Corr-247"><a href="#Corr-247"><span class="linenos"> 247</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-248"><a href="#Corr-248"><span class="linenos"> 248</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-249"><a href="#Corr-249"><span class="linenos"> 249</span></a><span class="sd">        t0 : int</span>
+</span><span id="Corr-250"><a href="#Corr-250"><span class="linenos"> 250</span></a><span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
+</span><span id="Corr-251"><a href="#Corr-251"><span class="linenos"> 251</span></a><span class="sd">        ts : int</span>
+</span><span id="Corr-252"><a href="#Corr-252"><span class="linenos"> 252</span></a><span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
+</span><span id="Corr-253"><a href="#Corr-253"><span class="linenos"> 253</span></a><span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
+</span><span id="Corr-254"><a href="#Corr-254"><span class="linenos"> 254</span></a><span class="sd">        state : int</span>
+</span><span id="Corr-255"><a href="#Corr-255"><span class="linenos"> 255</span></a><span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
+</span><span id="Corr-256"><a href="#Corr-256"><span class="linenos"> 256</span></a><span class="sd">        sorted_list : string</span>
+</span><span id="Corr-257"><a href="#Corr-257"><span class="linenos"> 257</span></a><span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
+</span><span id="Corr-258"><a href="#Corr-258"><span class="linenos"> 258</span></a><span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
+</span><span id="Corr-259"><a href="#Corr-259"><span class="linenos"> 259</span></a><span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
+</span><span id="Corr-260"><a href="#Corr-260"><span class="linenos"> 260</span></a><span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
+</span><span id="Corr-261"><a href="#Corr-261"><span class="linenos"> 261</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-262"><a href="#Corr-262"><span class="linenos"> 262</span></a>        <span class="k">if</span> <span class="n">sorted_list</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-263"><a href="#Corr-263"><span class="linenos"> 263</span></a>            <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-264"><a href="#Corr-264"><span class="linenos"> 264</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required if sorted_list=None&quot;</span><span class="p">)</span>
+</span><span id="Corr-265"><a href="#Corr-265"><span class="linenos"> 265</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">ts</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-266"><a href="#Corr-266"><span class="linenos"> 266</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr not defined at t0/ts&quot;</span><span class="p">)</span>
+</span><span id="Corr-267"><a href="#Corr-267"><span class="linenos"> 267</span></a>            <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
+</span><span id="Corr-268"><a href="#Corr-268"><span class="linenos"> 268</span></a>            <span class="n">symmetric_corr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">matrix_symmetric</span><span class="p">()</span>
+</span><span id="Corr-269"><a href="#Corr-269"><span class="linenos"> 269</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-270"><a href="#Corr-270"><span class="linenos"> 270</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-271"><a href="#Corr-271"><span class="linenos"> 271</span></a>                    <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr-272"><a href="#Corr-272"><span class="linenos"> 272</span></a>                    <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="p">[</span><span class="n">ts</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr-273"><a href="#Corr-273"><span class="linenos"> 273</span></a>
+</span><span id="Corr-274"><a href="#Corr-274"><span class="linenos"> 274</span></a>            <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
+</span><span id="Corr-275"><a href="#Corr-275"><span class="linenos"> 275</span></a>            <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
+</span><span id="Corr-276"><a href="#Corr-276"><span class="linenos"> 276</span></a>            <span class="k">return</span> <span class="n">sp_vec</span>
+</span><span id="Corr-277"><a href="#Corr-277"><span class="linenos"> 277</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-278"><a href="#Corr-278"><span class="linenos"> 278</span></a>
+</span><span id="Corr-279"><a href="#Corr-279"><span class="linenos"> 279</span></a>            <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-280"><a href="#Corr-280"><span class="linenos"> 280</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-281"><a href="#Corr-281"><span class="linenos"> 281</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="Corr-282"><a href="#Corr-282"><span class="linenos"> 282</span></a>                    <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
+</span><span id="Corr-283"><a href="#Corr-283"><span class="linenos"> 283</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-284"><a href="#Corr-284"><span class="linenos"> 284</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-285"><a href="#Corr-285"><span class="linenos"> 285</span></a>                            <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr-286"><a href="#Corr-286"><span class="linenos"> 286</span></a>                            <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr-287"><a href="#Corr-287"><span class="linenos"> 287</span></a>
+</span><span id="Corr-288"><a href="#Corr-288"><span class="linenos"> 288</span></a>                    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
+</span><span id="Corr-289"><a href="#Corr-289"><span class="linenos"> 289</span></a>                    <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvalue&quot;</span><span class="p">:</span>
+</span><span id="Corr-290"><a href="#Corr-290"><span class="linenos"> 290</span></a>                        <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
+</span><span id="Corr-291"><a href="#Corr-291"><span class="linenos"> 291</span></a>                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vec</span><span class="p">)</span>
+</span><span id="Corr-292"><a href="#Corr-292"><span class="linenos"> 292</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-293"><a href="#Corr-293"><span class="linenos"> 293</span></a>                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vecs</span><span class="p">)</span>
+</span><span id="Corr-294"><a href="#Corr-294"><span class="linenos"> 294</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="Corr-295"><a href="#Corr-295"><span class="linenos"> 295</span></a>                    <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-296"><a href="#Corr-296"><span class="linenos"> 296</span></a>            <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvector&quot;</span><span class="p">:</span>
+</span><span id="Corr-297"><a href="#Corr-297"><span class="linenos"> 297</span></a>                <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-298"><a href="#Corr-298"><span class="linenos"> 298</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required for the Eigenvector sorting method.&quot;</span><span class="p">)</span>
+</span><span id="Corr-299"><a href="#Corr-299"><span class="linenos"> 299</span></a>                <span class="n">all_vecs</span> <span class="o">=</span> <span class="n">_sort_vectors</span><span class="p">(</span><span class="n">all_vecs</span><span class="p">,</span> <span class="n">ts</span><span class="p">)</span>
+</span><span id="Corr-300"><a href="#Corr-300"><span class="linenos"> 300</span></a>                <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span><span class="p">[</span><span class="n">state</span><span class="p">]</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">all_vecs</span><span class="p">]</span>
+</span><span id="Corr-301"><a href="#Corr-301"><span class="linenos"> 301</span></a>
+</span><span id="Corr-302"><a href="#Corr-302"><span class="linenos"> 302</span></a>        <span class="k">return</span> <span class="n">all_vecs</span>
+</span><span id="Corr-303"><a href="#Corr-303"><span class="linenos"> 303</span></a>
+</span><span id="Corr-304"><a href="#Corr-304"><span class="linenos"> 304</span></a>    <span class="k">def</span> <span class="nf">Eigenvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-305"><a href="#Corr-305"><span class="linenos"> 305</span></a>        <span class="sd">&quot;&quot;&quot;Determines the eigenvalue of the GEVP by solving and projecting the correlator</span>
+</span><span id="Corr-306"><a href="#Corr-306"><span class="linenos"> 306</span></a>
+</span><span id="Corr-307"><a href="#Corr-307"><span class="linenos"> 307</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-308"><a href="#Corr-308"><span class="linenos"> 308</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-309"><a href="#Corr-309"><span class="linenos"> 309</span></a><span class="sd">        t0 : int</span>
+</span><span id="Corr-310"><a href="#Corr-310"><span class="linenos"> 310</span></a><span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
+</span><span id="Corr-311"><a href="#Corr-311"><span class="linenos"> 311</span></a><span class="sd">        ts : int</span>
+</span><span id="Corr-312"><a href="#Corr-312"><span class="linenos"> 312</span></a><span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
+</span><span id="Corr-313"><a href="#Corr-313"><span class="linenos"> 313</span></a><span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
+</span><span id="Corr-314"><a href="#Corr-314"><span class="linenos"> 314</span></a><span class="sd">        state : int</span>
+</span><span id="Corr-315"><a href="#Corr-315"><span class="linenos"> 315</span></a><span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
+</span><span id="Corr-316"><a href="#Corr-316"><span class="linenos"> 316</span></a><span class="sd">        sorted_list : string</span>
+</span><span id="Corr-317"><a href="#Corr-317"><span class="linenos"> 317</span></a><span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
+</span><span id="Corr-318"><a href="#Corr-318"><span class="linenos"> 318</span></a><span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
+</span><span id="Corr-319"><a href="#Corr-319"><span class="linenos"> 319</span></a><span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
+</span><span id="Corr-320"><a href="#Corr-320"><span class="linenos"> 320</span></a><span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
+</span><span id="Corr-321"><a href="#Corr-321"><span class="linenos"> 321</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-322"><a href="#Corr-322"><span class="linenos"> 322</span></a>        <span class="n">vec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GEVP</span><span class="p">(</span><span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="n">ts</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="n">sorted_list</span><span class="p">)</span>
+</span><span id="Corr-323"><a href="#Corr-323"><span class="linenos"> 323</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">projected</span><span class="p">(</span><span class="n">vec</span><span class="p">)</span>
+</span><span id="Corr-324"><a href="#Corr-324"><span class="linenos"> 324</span></a>
+</span><span id="Corr-325"><a href="#Corr-325"><span class="linenos"> 325</span></a>    <span class="k">def</span> <span class="nf">Hankel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">,</span> <span class="n">periodic</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr-326"><a href="#Corr-326"><span class="linenos"> 326</span></a>        <span class="sd">&quot;&quot;&quot;Constructs an NxN Hankel matrix</span>
+</span><span id="Corr-327"><a href="#Corr-327"><span class="linenos"> 327</span></a>
+</span><span id="Corr-328"><a href="#Corr-328"><span class="linenos"> 328</span></a><span class="sd">        C(t) c(t+1) ... c(t+n-1)</span>
+</span><span id="Corr-329"><a href="#Corr-329"><span class="linenos"> 329</span></a><span class="sd">        C(t+1) c(t+2) ... c(t+n)</span>
+</span><span id="Corr-330"><a href="#Corr-330"><span class="linenos"> 330</span></a><span class="sd">        .................</span>
+</span><span id="Corr-331"><a href="#Corr-331"><span class="linenos"> 331</span></a><span class="sd">        C(t+(n-1)) c(t+n) ... c(t+2(n-1))</span>
+</span><span id="Corr-332"><a href="#Corr-332"><span class="linenos"> 332</span></a>
+</span><span id="Corr-333"><a href="#Corr-333"><span class="linenos"> 333</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-334"><a href="#Corr-334"><span class="linenos"> 334</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-335"><a href="#Corr-335"><span class="linenos"> 335</span></a><span class="sd">        N : int</span>
+</span><span id="Corr-336"><a href="#Corr-336"><span class="linenos"> 336</span></a><span class="sd">            Dimension of the Hankel matrix</span>
+</span><span id="Corr-337"><a href="#Corr-337"><span class="linenos"> 337</span></a><span class="sd">        periodic : bool, optional</span>
+</span><span id="Corr-338"><a href="#Corr-338"><span class="linenos"> 338</span></a><span class="sd">            determines whether the matrix is extended periodically</span>
+</span><span id="Corr-339"><a href="#Corr-339"><span class="linenos"> 339</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-340"><a href="#Corr-340"><span class="linenos"> 340</span></a>
+</span><span id="Corr-341"><a href="#Corr-341"><span class="linenos"> 341</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-342"><a href="#Corr-342"><span class="linenos"> 342</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multi-operator Prony not implemented!&quot;</span><span class="p">)</span>
+</span><span id="Corr-343"><a href="#Corr-343"><span class="linenos"> 343</span></a>
+</span><span id="Corr-344"><a href="#Corr-344"><span class="linenos"> 344</span></a>        <span class="n">array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
+</span><span id="Corr-345"><a href="#Corr-345"><span class="linenos"> 345</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-346"><a href="#Corr-346"><span class="linenos"> 346</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-347"><a href="#Corr-347"><span class="linenos"> 347</span></a>            <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
+</span><span id="Corr-348"><a href="#Corr-348"><span class="linenos"> 348</span></a>
+</span><span id="Corr-349"><a href="#Corr-349"><span class="linenos"> 349</span></a>        <span class="k">def</span> <span class="nf">wrap</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="Corr-350"><a href="#Corr-350"><span class="linenos"> 350</span></a>            <span class="k">while</span> <span class="n">i</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr-351"><a href="#Corr-351"><span class="linenos"> 351</span></a>                <span class="n">i</span> <span class="o">-=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr-352"><a href="#Corr-352"><span class="linenos"> 352</span></a>            <span class="k">return</span> <span class="n">i</span>
+</span><span id="Corr-353"><a href="#Corr-353"><span class="linenos"> 353</span></a>
+</span><span id="Corr-354"><a href="#Corr-354"><span class="linenos"> 354</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-355"><a href="#Corr-355"><span class="linenos"> 355</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-356"><a href="#Corr-356"><span class="linenos"> 356</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr-357"><a href="#Corr-357"><span class="linenos"> 357</span></a>                    <span class="k">if</span> <span class="n">periodic</span><span class="p">:</span>
+</span><span id="Corr-358"><a href="#Corr-358"><span class="linenos"> 358</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">wrap</span><span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr-359"><a href="#Corr-359"><span class="linenos"> 359</span></a>                    <span class="k">elif</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr-360"><a href="#Corr-360"><span class="linenos"> 360</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Corr-361"><a href="#Corr-361"><span class="linenos"> 361</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-362"><a href="#Corr-362"><span class="linenos"> 362</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr-363"><a href="#Corr-363"><span class="linenos"> 363</span></a>
+</span><span id="Corr-364"><a href="#Corr-364"><span class="linenos"> 364</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="Corr-365"><a href="#Corr-365"><span class="linenos"> 365</span></a>
+</span><span id="Corr-366"><a href="#Corr-366"><span class="linenos"> 366</span></a>    <span class="k">def</span> <span class="nf">roll</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dt</span><span class="p">):</span>
+</span><span id="Corr-367"><a href="#Corr-367"><span class="linenos"> 367</span></a>        <span class="sd">&quot;&quot;&quot;Periodically shift the correlator by dt timeslices</span>
+</span><span id="Corr-368"><a href="#Corr-368"><span class="linenos"> 368</span></a>
+</span><span id="Corr-369"><a href="#Corr-369"><span class="linenos"> 369</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-370"><a href="#Corr-370"><span class="linenos"> 370</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-371"><a href="#Corr-371"><span class="linenos"> 371</span></a><span class="sd">        dt : int</span>
+</span><span id="Corr-372"><a href="#Corr-372"><span class="linenos"> 372</span></a><span class="sd">            number of timeslices</span>
+</span><span id="Corr-373"><a href="#Corr-373"><span class="linenos"> 373</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-374"><a href="#Corr-374"><span class="linenos"> 374</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">roll</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">),</span> <span class="n">dt</span><span class="p">)))</span>
+</span><span id="Corr-375"><a href="#Corr-375"><span class="linenos"> 375</span></a>
+</span><span id="Corr-376"><a href="#Corr-376"><span class="linenos"> 376</span></a>    <span class="k">def</span> <span class="nf">reverse</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-377"><a href="#Corr-377"><span class="linenos"> 377</span></a>        <span class="sd">&quot;&quot;&quot;Reverse the time ordering of the Corr&quot;&quot;&quot;</span>
+</span><span id="Corr-378"><a href="#Corr-378"><span class="linenos"> 378</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[::</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-379"><a href="#Corr-379"><span class="linenos"> 379</span></a>
+</span><span id="Corr-380"><a href="#Corr-380"><span class="linenos"> 380</span></a>    <span class="k">def</span> <span class="nf">thin</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
+</span><span id="Corr-381"><a href="#Corr-381"><span class="linenos"> 381</span></a>        <span class="sd">&quot;&quot;&quot;Thin out a correlator to suppress correlations</span>
+</span><span id="Corr-382"><a href="#Corr-382"><span class="linenos"> 382</span></a>
+</span><span id="Corr-383"><a href="#Corr-383"><span class="linenos"> 383</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-384"><a href="#Corr-384"><span class="linenos"> 384</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-385"><a href="#Corr-385"><span class="linenos"> 385</span></a><span class="sd">        spacing : int</span>
+</span><span id="Corr-386"><a href="#Corr-386"><span class="linenos"> 386</span></a><span class="sd">            Keep only every &#39;spacing&#39;th entry of the correlator</span>
+</span><span id="Corr-387"><a href="#Corr-387"><span class="linenos"> 387</span></a><span class="sd">        offset : int</span>
+</span><span id="Corr-388"><a href="#Corr-388"><span class="linenos"> 388</span></a><span class="sd">            Offset the equal spacing</span>
+</span><span id="Corr-389"><a href="#Corr-389"><span class="linenos"> 389</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-390"><a href="#Corr-390"><span class="linenos"> 390</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-391"><a href="#Corr-391"><span class="linenos"> 391</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-392"><a href="#Corr-392"><span class="linenos"> 392</span></a>            <span class="k">if</span> <span class="p">(</span><span class="n">offset</span> <span class="o">+</span> <span class="n">t</span><span class="p">)</span> <span class="o">%</span> <span class="n">spacing</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr-393"><a href="#Corr-393"><span class="linenos"> 393</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-394"><a href="#Corr-394"><span class="linenos"> 394</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-395"><a href="#Corr-395"><span class="linenos"> 395</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr-396"><a href="#Corr-396"><span class="linenos"> 396</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="Corr-397"><a href="#Corr-397"><span class="linenos"> 397</span></a>
+</span><span id="Corr-398"><a href="#Corr-398"><span class="linenos"> 398</span></a>    <span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">):</span>
+</span><span id="Corr-399"><a href="#Corr-399"><span class="linenos"> 399</span></a>        <span class="sd">&quot;&quot;&quot;Correlate the correlator with another correlator or Obs</span>
+</span><span id="Corr-400"><a href="#Corr-400"><span class="linenos"> 400</span></a>
+</span><span id="Corr-401"><a href="#Corr-401"><span class="linenos"> 401</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-402"><a href="#Corr-402"><span class="linenos"> 402</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-403"><a href="#Corr-403"><span class="linenos"> 403</span></a><span class="sd">        partner : Obs or Corr</span>
+</span><span id="Corr-404"><a href="#Corr-404"><span class="linenos"> 404</span></a><span class="sd">            partner to correlate the correlator with.</span>
+</span><span id="Corr-405"><a href="#Corr-405"><span class="linenos"> 405</span></a><span class="sd">            Can either be an Obs which is correlated with all entries of the</span>
+</span><span id="Corr-406"><a href="#Corr-406"><span class="linenos"> 406</span></a><span class="sd">            correlator or a Corr of same length.</span>
+</span><span id="Corr-407"><a href="#Corr-407"><span class="linenos"> 407</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-408"><a href="#Corr-408"><span class="linenos"> 408</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-409"><a href="#Corr-409"><span class="linenos"> 409</span></a>        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
+</span><span id="Corr-410"><a href="#Corr-410"><span class="linenos"> 410</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-411"><a href="#Corr-411"><span class="linenos"> 411</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-412"><a href="#Corr-412"><span class="linenos"> 412</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-413"><a href="#Corr-413"><span class="linenos"> 413</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="Corr-414"><a href="#Corr-414"><span class="linenos"> 414</span></a>                    <span class="k">if</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-415"><a href="#Corr-415"><span class="linenos"> 415</span></a>                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-416"><a href="#Corr-416"><span class="linenos"> 416</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-417"><a href="#Corr-417"><span class="linenos"> 417</span></a>                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
+</span><span id="Corr-418"><a href="#Corr-418"><span class="linenos"> 418</span></a>                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>  <span class="c1"># Should this include CObs?</span>
+</span><span id="Corr-419"><a href="#Corr-419"><span class="linenos"> 419</span></a>                    <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
+</span><span id="Corr-420"><a href="#Corr-420"><span class="linenos"> 420</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-421"><a href="#Corr-421"><span class="linenos"> 421</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only correlate with an Obs or a Corr.&quot;</span><span class="p">)</span>
+</span><span id="Corr-422"><a href="#Corr-422"><span class="linenos"> 422</span></a>
+</span><span id="Corr-423"><a href="#Corr-423"><span class="linenos"> 423</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="Corr-424"><a href="#Corr-424"><span class="linenos"> 424</span></a>
+</span><span id="Corr-425"><a href="#Corr-425"><span class="linenos"> 425</span></a>    <span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">weight</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr-426"><a href="#Corr-426"><span class="linenos"> 426</span></a>        <span class="sd">&quot;&quot;&quot;Reweight the correlator.</span>
+</span><span id="Corr-427"><a href="#Corr-427"><span class="linenos"> 427</span></a>
+</span><span id="Corr-428"><a href="#Corr-428"><span class="linenos"> 428</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-429"><a href="#Corr-429"><span class="linenos"> 429</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-430"><a href="#Corr-430"><span class="linenos"> 430</span></a><span class="sd">        weight : Obs</span>
+</span><span id="Corr-431"><a href="#Corr-431"><span class="linenos"> 431</span></a><span class="sd">            Reweighting factor. An Observable that has to be defined on a superset of the</span>
+</span><span id="Corr-432"><a href="#Corr-432"><span class="linenos"> 432</span></a><span class="sd">            configurations in obs[i].idl for all i.</span>
+</span><span id="Corr-433"><a href="#Corr-433"><span class="linenos"> 433</span></a><span class="sd">        all_configs : bool</span>
+</span><span id="Corr-434"><a href="#Corr-434"><span class="linenos"> 434</span></a><span class="sd">            if True, the reweighted observables are normalized by the average of</span>
+</span><span id="Corr-435"><a href="#Corr-435"><span class="linenos"> 435</span></a><span class="sd">            the reweighting factor on all configurations in weight.idl and not</span>
+</span><span id="Corr-436"><a href="#Corr-436"><span class="linenos"> 436</span></a><span class="sd">            on the configurations in obs[i].idl.</span>
+</span><span id="Corr-437"><a href="#Corr-437"><span class="linenos"> 437</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-438"><a href="#Corr-438"><span class="linenos"> 438</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-439"><a href="#Corr-439"><span class="linenos"> 439</span></a>        <span class="k">for</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
+</span><span id="Corr-440"><a href="#Corr-440"><span class="linenos"> 440</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-441"><a href="#Corr-441"><span class="linenos"> 441</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-442"><a href="#Corr-442"><span class="linenos"> 442</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-443"><a href="#Corr-443"><span class="linenos"> 443</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">t_slice</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
+</span><span id="Corr-444"><a href="#Corr-444"><span class="linenos"> 444</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span><span id="Corr-445"><a href="#Corr-445"><span class="linenos"> 445</span></a>
+</span><span id="Corr-446"><a href="#Corr-446"><span class="linenos"> 446</span></a>    <span class="k">def</span> <span class="nf">T_symmetry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">,</span> <span class="n">parity</span><span class="o">=+</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-447"><a href="#Corr-447"><span class="linenos"> 447</span></a>        <span class="sd">&quot;&quot;&quot;Return the time symmetry average of the correlator and its partner</span>
+</span><span id="Corr-448"><a href="#Corr-448"><span class="linenos"> 448</span></a>
+</span><span id="Corr-449"><a href="#Corr-449"><span class="linenos"> 449</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-450"><a href="#Corr-450"><span class="linenos"> 450</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-451"><a href="#Corr-451"><span class="linenos"> 451</span></a><span class="sd">        partner : Corr</span>
+</span><span id="Corr-452"><a href="#Corr-452"><span class="linenos"> 452</span></a><span class="sd">            Time symmetry partner of the Corr</span>
+</span><span id="Corr-453"><a href="#Corr-453"><span class="linenos"> 453</span></a><span class="sd">        partity : int</span>
+</span><span id="Corr-454"><a href="#Corr-454"><span class="linenos"> 454</span></a><span class="sd">            Parity quantum number of the correlator, can be +1 or -1</span>
+</span><span id="Corr-455"><a href="#Corr-455"><span class="linenos"> 455</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-456"><a href="#Corr-456"><span class="linenos"> 456</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="Corr-457"><a href="#Corr-457"><span class="linenos"> 457</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;T partner has to be a Corr object.&quot;</span><span class="p">)</span>
+</span><span id="Corr-458"><a href="#Corr-458"><span class="linenos"> 458</span></a>        <span class="k">if</span> <span class="n">parity</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="o">+</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr-459"><a href="#Corr-459"><span class="linenos"> 459</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Parity has to be +1 or -1.&quot;</span><span class="p">)</span>
+</span><span id="Corr-460"><a href="#Corr-460"><span class="linenos"> 460</span></a>        <span class="n">T_partner</span> <span class="o">=</span> <span class="n">parity</span> <span class="o">*</span> <span class="n">partner</span><span class="o">.</span><span class="n">reverse</span><span class="p">()</span>
+</span><span id="Corr-461"><a href="#Corr-461"><span class="linenos"> 461</span></a>
+</span><span id="Corr-462"><a href="#Corr-462"><span class="linenos"> 462</span></a>        <span class="n">t_slices</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-463"><a href="#Corr-463"><span class="linenos"> 463</span></a>        <span class="n">test</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">T_partner</span><span class="p">)</span>
+</span><span id="Corr-464"><a href="#Corr-464"><span class="linenos"> 464</span></a>        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr-465"><a href="#Corr-465"><span class="linenos"> 465</span></a>        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
+</span><span id="Corr-466"><a href="#Corr-466"><span class="linenos"> 466</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-467"><a href="#Corr-467"><span class="linenos"> 467</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">t_slice</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">5</span><span class="p">):</span>
+</span><span id="Corr-468"><a href="#Corr-468"><span class="linenos"> 468</span></a>                    <span class="n">t_slices</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span>
+</span><span id="Corr-469"><a href="#Corr-469"><span class="linenos"> 469</span></a>        <span class="k">if</span> <span class="n">t_slices</span><span class="p">:</span>
+</span><span id="Corr-470"><a href="#Corr-470"><span class="linenos"> 470</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;T symmetry partners do not agree within 5 sigma on time slices &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">t_slices</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr-471"><a href="#Corr-471"><span class="linenos"> 471</span></a>
+</span><span id="Corr-472"><a href="#Corr-472"><span class="linenos"> 472</span></a>        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">+</span> <span class="n">T_partner</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
+</span><span id="Corr-473"><a href="#Corr-473"><span class="linenos"> 473</span></a>
+</span><span id="Corr-474"><a href="#Corr-474"><span class="linenos"> 474</span></a>    <span class="k">def</span> <span class="nf">deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
+</span><span id="Corr-475"><a href="#Corr-475"><span class="linenos"> 475</span></a>        <span class="sd">&quot;&quot;&quot;Return the first derivative of the correlator with respect to x0.</span>
+</span><span id="Corr-476"><a href="#Corr-476"><span class="linenos"> 476</span></a>
+</span><span id="Corr-477"><a href="#Corr-477"><span class="linenos"> 477</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-478"><a href="#Corr-478"><span class="linenos"> 478</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-479"><a href="#Corr-479"><span class="linenos"> 479</span></a><span class="sd">        variant : str</span>
+</span><span id="Corr-480"><a href="#Corr-480"><span class="linenos"> 480</span></a><span class="sd">            decides which definition of the finite differences derivative is used.</span>
+</span><span id="Corr-481"><a href="#Corr-481"><span class="linenos"> 481</span></a><span class="sd">            Available choice: symmetric, forward, backward, improved, default: symmetric</span>
+</span><span id="Corr-482"><a href="#Corr-482"><span class="linenos"> 482</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-483"><a href="#Corr-483"><span class="linenos"> 483</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
+</span><span id="Corr-484"><a href="#Corr-484"><span class="linenos"> 484</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-485"><a href="#Corr-485"><span class="linenos"> 485</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-486"><a href="#Corr-486"><span class="linenos"> 486</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-487"><a href="#Corr-487"><span class="linenos"> 487</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-488"><a href="#Corr-488"><span class="linenos"> 488</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-489"><a href="#Corr-489"><span class="linenos"> 489</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr-490"><a href="#Corr-490"><span class="linenos"> 490</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-491"><a href="#Corr-491"><span class="linenos"> 491</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr-492"><a href="#Corr-492"><span class="linenos"> 492</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-493"><a href="#Corr-493"><span class="linenos"> 493</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;forward&quot;</span><span class="p">:</span>
+</span><span id="Corr-494"><a href="#Corr-494"><span class="linenos"> 494</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-495"><a href="#Corr-495"><span class="linenos"> 495</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-496"><a href="#Corr-496"><span class="linenos"> 496</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-497"><a href="#Corr-497"><span class="linenos"> 497</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-498"><a href="#Corr-498"><span class="linenos"> 498</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-499"><a href="#Corr-499"><span class="linenos"> 499</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr-500"><a href="#Corr-500"><span class="linenos"> 500</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-501"><a href="#Corr-501"><span class="linenos"> 501</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr-502"><a href="#Corr-502"><span class="linenos"> 502</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-503"><a href="#Corr-503"><span class="linenos"> 503</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;backward&quot;</span><span class="p">:</span>
+</span><span id="Corr-504"><a href="#Corr-504"><span class="linenos"> 504</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-505"><a href="#Corr-505"><span class="linenos"> 505</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-506"><a href="#Corr-506"><span class="linenos"> 506</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-507"><a href="#Corr-507"><span class="linenos"> 507</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-508"><a href="#Corr-508"><span class="linenos"> 508</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-509"><a href="#Corr-509"><span class="linenos"> 509</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-510"><a href="#Corr-510"><span class="linenos"> 510</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-511"><a href="#Corr-511"><span class="linenos"> 511</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr-512"><a href="#Corr-512"><span class="linenos"> 512</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">])</span>
+</span><span id="Corr-513"><a href="#Corr-513"><span class="linenos"> 513</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
+</span><span id="Corr-514"><a href="#Corr-514"><span class="linenos"> 514</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-515"><a href="#Corr-515"><span class="linenos"> 515</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="Corr-516"><a href="#Corr-516"><span class="linenos"> 516</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-517"><a href="#Corr-517"><span class="linenos"> 517</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-518"><a href="#Corr-518"><span class="linenos"> 518</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-519"><a href="#Corr-519"><span class="linenos"> 519</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]))</span>
+</span><span id="Corr-520"><a href="#Corr-520"><span class="linenos"> 520</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-521"><a href="#Corr-521"><span class="linenos"> 521</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr-522"><a href="#Corr-522"><span class="linenos"> 522</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Corr-523"><a href="#Corr-523"><span class="linenos"> 523</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-524"><a href="#Corr-524"><span class="linenos"> 524</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
+</span><span id="Corr-525"><a href="#Corr-525"><span class="linenos"> 525</span></a>
+</span><span id="Corr-526"><a href="#Corr-526"><span class="linenos"> 526</span></a>    <span class="k">def</span> <span class="nf">second_deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
+</span><span id="Corr-527"><a href="#Corr-527"><span class="linenos"> 527</span></a>        <span class="sd">&quot;&quot;&quot;Return the second derivative of the correlator with respect to x0.</span>
+</span><span id="Corr-528"><a href="#Corr-528"><span class="linenos"> 528</span></a>
+</span><span id="Corr-529"><a href="#Corr-529"><span class="linenos"> 529</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-530"><a href="#Corr-530"><span class="linenos"> 530</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-531"><a href="#Corr-531"><span class="linenos"> 531</span></a><span class="sd">        variant : str</span>
+</span><span id="Corr-532"><a href="#Corr-532"><span class="linenos"> 532</span></a><span class="sd">            decides which definition of the finite differences derivative is used.</span>
+</span><span id="Corr-533"><a href="#Corr-533"><span class="linenos"> 533</span></a><span class="sd">            Available choice: symmetric, improved, default: symmetric</span>
+</span><span id="Corr-534"><a href="#Corr-534"><span class="linenos"> 534</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-535"><a href="#Corr-535"><span class="linenos"> 535</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
+</span><span id="Corr-536"><a href="#Corr-536"><span class="linenos"> 536</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-537"><a href="#Corr-537"><span class="linenos"> 537</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-538"><a href="#Corr-538"><span class="linenos"> 538</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-539"><a href="#Corr-539"><span class="linenos"> 539</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-540"><a href="#Corr-540"><span class="linenos"> 540</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-541"><a href="#Corr-541"><span class="linenos"> 541</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr-542"><a href="#Corr-542"><span class="linenos"> 542</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-543"><a href="#Corr-543"><span class="linenos"> 543</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr-544"><a href="#Corr-544"><span class="linenos"> 544</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-545"><a href="#Corr-545"><span class="linenos"> 545</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
+</span><span id="Corr-546"><a href="#Corr-546"><span class="linenos"> 546</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-547"><a href="#Corr-547"><span class="linenos"> 547</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="Corr-548"><a href="#Corr-548"><span class="linenos"> 548</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-549"><a href="#Corr-549"><span class="linenos"> 549</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-550"><a href="#Corr-550"><span class="linenos"> 550</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-551"><a href="#Corr-551"><span class="linenos"> 551</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">30</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]))</span>
+</span><span id="Corr-552"><a href="#Corr-552"><span class="linenos"> 552</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-553"><a href="#Corr-553"><span class="linenos"> 553</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr-554"><a href="#Corr-554"><span class="linenos"> 554</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Corr-555"><a href="#Corr-555"><span class="linenos"> 555</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-556"><a href="#Corr-556"><span class="linenos"> 556</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
+</span><span id="Corr-557"><a href="#Corr-557"><span class="linenos"> 557</span></a>
+</span><span id="Corr-558"><a href="#Corr-558"><span class="linenos"> 558</span></a>    <span class="k">def</span> <span class="nf">m_eff</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s1">&#39;log&#39;</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
+</span><span id="Corr-559"><a href="#Corr-559"><span class="linenos"> 559</span></a>        <span class="sd">&quot;&quot;&quot;Returns the effective mass of the correlator as correlator object</span>
+</span><span id="Corr-560"><a href="#Corr-560"><span class="linenos"> 560</span></a>
+</span><span id="Corr-561"><a href="#Corr-561"><span class="linenos"> 561</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-562"><a href="#Corr-562"><span class="linenos"> 562</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-563"><a href="#Corr-563"><span class="linenos"> 563</span></a><span class="sd">        variant : str</span>
+</span><span id="Corr-564"><a href="#Corr-564"><span class="linenos"> 564</span></a><span class="sd">            log : uses the standard effective mass log(C(t) / C(t+1))</span>
+</span><span id="Corr-565"><a href="#Corr-565"><span class="linenos"> 565</span></a><span class="sd">            cosh, periodic : Use periodicitiy of the correlator by solving C(t) / C(t+1) = cosh(m * (t - T/2)) / cosh(m * (t + 1 - T/2)) for m.</span>
+</span><span id="Corr-566"><a href="#Corr-566"><span class="linenos"> 566</span></a><span class="sd">            sinh : Use anti-periodicitiy of the correlator by solving C(t) / C(t+1) = sinh(m * (t - T/2)) / sinh(m * (t + 1 - T/2)) for m.</span>
+</span><span id="Corr-567"><a href="#Corr-567"><span class="linenos"> 567</span></a><span class="sd">            See, e.g., arXiv:1205.5380</span>
+</span><span id="Corr-568"><a href="#Corr-568"><span class="linenos"> 568</span></a><span class="sd">            arccosh : Uses the explicit form of the symmetrized correlator (not recommended)</span>
+</span><span id="Corr-569"><a href="#Corr-569"><span class="linenos"> 569</span></a><span class="sd">        guess : float</span>
+</span><span id="Corr-570"><a href="#Corr-570"><span class="linenos"> 570</span></a><span class="sd">            guess for the root finder, only relevant for the root variant</span>
+</span><span id="Corr-571"><a href="#Corr-571"><span class="linenos"> 571</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-572"><a href="#Corr-572"><span class="linenos"> 572</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-573"><a href="#Corr-573"><span class="linenos"> 573</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator must be projected before getting m_eff&#39;</span><span class="p">)</span>
+</span><span id="Corr-574"><a href="#Corr-574"><span class="linenos"> 574</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;log&#39;</span><span class="p">:</span>
+</span><span id="Corr-575"><a href="#Corr-575"><span class="linenos"> 575</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-576"><a href="#Corr-576"><span class="linenos"> 576</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-577"><a href="#Corr-577"><span class="linenos"> 577</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-578"><a href="#Corr-578"><span class="linenos"> 578</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-579"><a href="#Corr-579"><span class="linenos"> 579</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-580"><a href="#Corr-580"><span class="linenos"> 580</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-581"><a href="#Corr-581"><span class="linenos"> 581</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-582"><a href="#Corr-582"><span class="linenos"> 582</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr-583"><a href="#Corr-583"><span class="linenos"> 583</span></a>
+</span><span id="Corr-584"><a href="#Corr-584"><span class="linenos"> 584</span></a>            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr-585"><a href="#Corr-585"><span class="linenos"> 585</span></a>
+</span><span id="Corr-586"><a href="#Corr-586"><span class="linenos"> 586</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">,</span> <span class="s1">&#39;sinh&#39;</span><span class="p">]:</span>
+</span><span id="Corr-587"><a href="#Corr-587"><span class="linenos"> 587</span></a>            <span class="k">if</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">]:</span>
+</span><span id="Corr-588"><a href="#Corr-588"><span class="linenos"> 588</span></a>                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">cosh</span>
+</span><span id="Corr-589"><a href="#Corr-589"><span class="linenos"> 589</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-590"><a href="#Corr-590"><span class="linenos"> 590</span></a>                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sinh</span>
+</span><span id="Corr-591"><a href="#Corr-591"><span class="linenos"> 591</span></a>
+</span><span id="Corr-592"><a href="#Corr-592"><span class="linenos"> 592</span></a>            <span class="k">def</span> <span class="nf">root_function</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
+</span><span id="Corr-593"><a href="#Corr-593"><span class="linenos"> 593</span></a>                <span class="k">return</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">/</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">-</span> <span class="n">d</span>
+</span><span id="Corr-594"><a href="#Corr-594"><span class="linenos"> 594</span></a>
+</span><span id="Corr-595"><a href="#Corr-595"><span class="linenos"> 595</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-596"><a href="#Corr-596"><span class="linenos"> 596</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-597"><a href="#Corr-597"><span class="linenos"> 597</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-598"><a href="#Corr-598"><span class="linenos"> 598</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-599"><a href="#Corr-599"><span class="linenos"> 599</span></a>                <span class="c1"># Fill the two timeslices in the middle of the lattice with their predecessors</span>
+</span><span id="Corr-600"><a href="#Corr-600"><span class="linenos"> 600</span></a>                <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;sinh&#39;</span> <span class="ow">and</span> <span class="n">t</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr-601"><a href="#Corr-601"><span class="linenos"> 601</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-602"><a href="#Corr-602"><span class="linenos"> 602</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-603"><a href="#Corr-603"><span class="linenos"> 603</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">find_root</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">root_function</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="n">guess</span><span class="p">)))</span>
+</span><span id="Corr-604"><a href="#Corr-604"><span class="linenos"> 604</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-605"><a href="#Corr-605"><span class="linenos"> 605</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr-606"><a href="#Corr-606"><span class="linenos"> 606</span></a>
+</span><span id="Corr-607"><a href="#Corr-607"><span class="linenos"> 607</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr-608"><a href="#Corr-608"><span class="linenos"> 608</span></a>
+</span><span id="Corr-609"><a href="#Corr-609"><span class="linenos"> 609</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;arccosh&#39;</span><span class="p">:</span>
+</span><span id="Corr-610"><a href="#Corr-610"><span class="linenos"> 610</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-611"><a href="#Corr-611"><span class="linenos"> 611</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr-612"><a href="#Corr-612"><span class="linenos"> 612</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-613"><a href="#Corr-613"><span class="linenos"> 613</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-614"><a href="#Corr-614"><span class="linenos"> 614</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-615"><a href="#Corr-615"><span class="linenos"> 615</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]))</span>
+</span><span id="Corr-616"><a href="#Corr-616"><span class="linenos"> 616</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr-617"><a href="#Corr-617"><span class="linenos"> 617</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;m_eff is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr-618"><a href="#Corr-618"><span class="linenos"> 618</span></a>            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr-619"><a href="#Corr-619"><span class="linenos"> 619</span></a>
+</span><span id="Corr-620"><a href="#Corr-620"><span class="linenos"> 620</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-621"><a href="#Corr-621"><span class="linenos"> 621</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown variant.&#39;</span><span class="p">)</span>
+</span><span id="Corr-622"><a href="#Corr-622"><span class="linenos"> 622</span></a>
+</span><span id="Corr-623"><a href="#Corr-623"><span class="linenos"> 623</span></a>    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">fitrange</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr-624"><a href="#Corr-624"><span class="linenos"> 624</span></a>        <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Fits function to the data</span>
+</span><span id="Corr-625"><a href="#Corr-625"><span class="linenos"> 625</span></a>
+</span><span id="Corr-626"><a href="#Corr-626"><span class="linenos"> 626</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-627"><a href="#Corr-627"><span class="linenos"> 627</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-628"><a href="#Corr-628"><span class="linenos"> 628</span></a><span class="sd">        function : obj</span>
+</span><span id="Corr-629"><a href="#Corr-629"><span class="linenos"> 629</span></a><span class="sd">            function to fit to the data. See fits.least_squares for details.</span>
+</span><span id="Corr-630"><a href="#Corr-630"><span class="linenos"> 630</span></a><span class="sd">        fitrange : list</span>
+</span><span id="Corr-631"><a href="#Corr-631"><span class="linenos"> 631</span></a><span class="sd">            Two element list containing the timeslices on which the fit is supposed to start and stop.</span>
+</span><span id="Corr-632"><a href="#Corr-632"><span class="linenos"> 632</span></a><span class="sd">            Caution: This range is inclusive as opposed to standard python indexing.</span>
+</span><span id="Corr-633"><a href="#Corr-633"><span class="linenos"> 633</span></a><span class="sd">            `fitrange=[4, 6]` corresponds to the three entries 4, 5 and 6.</span>
+</span><span id="Corr-634"><a href="#Corr-634"><span class="linenos"> 634</span></a><span class="sd">            If not specified, self.prange or all timeslices are used.</span>
+</span><span id="Corr-635"><a href="#Corr-635"><span class="linenos"> 635</span></a><span class="sd">        silent : bool</span>
+</span><span id="Corr-636"><a href="#Corr-636"><span class="linenos"> 636</span></a><span class="sd">            Decides whether output is printed to the standard output.</span>
+</span><span id="Corr-637"><a href="#Corr-637"><span class="linenos"> 637</span></a><span class="sd">        &#39;&#39;&#39;</span>
+</span><span id="Corr-638"><a href="#Corr-638"><span class="linenos"> 638</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-639"><a href="#Corr-639"><span class="linenos"> 639</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before fitting&quot;</span><span class="p">)</span>
+</span><span id="Corr-640"><a href="#Corr-640"><span class="linenos"> 640</span></a>
+</span><span id="Corr-641"><a href="#Corr-641"><span class="linenos"> 641</span></a>        <span class="k">if</span> <span class="n">fitrange</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-642"><a href="#Corr-642"><span class="linenos"> 642</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="Corr-643"><a href="#Corr-643"><span class="linenos"> 643</span></a>                <span class="n">fitrange</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="Corr-644"><a href="#Corr-644"><span class="linenos"> 644</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-645"><a href="#Corr-645"><span class="linenos"> 645</span></a>                <span class="n">fitrange</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="Corr-646"><a href="#Corr-646"><span class="linenos"> 646</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-647"><a href="#Corr-647"><span class="linenos"> 647</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fitrange</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr-648"><a href="#Corr-648"><span class="linenos"> 648</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to be a list with two elements&quot;</span><span class="p">)</span>
+</span><span id="Corr-649"><a href="#Corr-649"><span class="linenos"> 649</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">fitrange</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Corr-650"><a href="#Corr-650"><span class="linenos"> 650</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to have exactly two elements [fit_start, fit_stop]&quot;</span><span class="p">)</span>
+</span><span id="Corr-651"><a href="#Corr-651"><span class="linenos"> 651</span></a>
+</span><span id="Corr-652"><a href="#Corr-652"><span class="linenos"> 652</span></a>        <span class="n">xs</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr-653"><a href="#Corr-653"><span class="linenos"> 653</span></a>        <span class="n">ys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr-654"><a href="#Corr-654"><span class="linenos"> 654</span></a>        <span class="n">result</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">xs</span><span class="p">,</span> <span class="n">ys</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="Corr-655"><a href="#Corr-655"><span class="linenos"> 655</span></a>        <span class="k">return</span> <span class="n">result</span>
+</span><span id="Corr-656"><a href="#Corr-656"><span class="linenos"> 656</span></a>
+</span><span id="Corr-657"><a href="#Corr-657"><span class="linenos"> 657</span></a>    <span class="k">def</span> <span class="nf">plateau</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">plateau_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fit&quot;</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr-658"><a href="#Corr-658"><span class="linenos"> 658</span></a>        <span class="sd">&quot;&quot;&quot; Extract a plateau value from a Corr object</span>
+</span><span id="Corr-659"><a href="#Corr-659"><span class="linenos"> 659</span></a>
+</span><span id="Corr-660"><a href="#Corr-660"><span class="linenos"> 660</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-661"><a href="#Corr-661"><span class="linenos"> 661</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-662"><a href="#Corr-662"><span class="linenos"> 662</span></a><span class="sd">        plateau_range : list</span>
+</span><span id="Corr-663"><a href="#Corr-663"><span class="linenos"> 663</span></a><span class="sd">            list with two entries, indicating the first and the last timeslice</span>
+</span><span id="Corr-664"><a href="#Corr-664"><span class="linenos"> 664</span></a><span class="sd">            of the plateau region.</span>
+</span><span id="Corr-665"><a href="#Corr-665"><span class="linenos"> 665</span></a><span class="sd">        method : str</span>
+</span><span id="Corr-666"><a href="#Corr-666"><span class="linenos"> 666</span></a><span class="sd">            method to extract the plateau.</span>
+</span><span id="Corr-667"><a href="#Corr-667"><span class="linenos"> 667</span></a><span class="sd">                &#39;fit&#39; fits a constant to the plateau region</span>
+</span><span id="Corr-668"><a href="#Corr-668"><span class="linenos"> 668</span></a><span class="sd">                &#39;avg&#39;, &#39;average&#39; or &#39;mean&#39; just average over the given timeslices.</span>
+</span><span id="Corr-669"><a href="#Corr-669"><span class="linenos"> 669</span></a><span class="sd">        auto_gamma : bool</span>
+</span><span id="Corr-670"><a href="#Corr-670"><span class="linenos"> 670</span></a><span class="sd">            apply gamma_method with default parameters to the Corr. Defaults to None</span>
+</span><span id="Corr-671"><a href="#Corr-671"><span class="linenos"> 671</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-672"><a href="#Corr-672"><span class="linenos"> 672</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">plateau_range</span><span class="p">:</span>
+</span><span id="Corr-673"><a href="#Corr-673"><span class="linenos"> 673</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="Corr-674"><a href="#Corr-674"><span class="linenos"> 674</span></a>                <span class="n">plateau_range</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="Corr-675"><a href="#Corr-675"><span class="linenos"> 675</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-676"><a href="#Corr-676"><span class="linenos"> 676</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;no plateau range provided&quot;</span><span class="p">)</span>
+</span><span id="Corr-677"><a href="#Corr-677"><span class="linenos"> 677</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-678"><a href="#Corr-678"><span class="linenos"> 678</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before getting a plateau.&quot;</span><span class="p">)</span>
+</span><span id="Corr-679"><a href="#Corr-679"><span class="linenos"> 679</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)])):</span>
+</span><span id="Corr-680"><a href="#Corr-680"><span class="linenos"> 680</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;plateau is undefined at all timeslices in plateaurange.&quot;</span><span class="p">)</span>
+</span><span id="Corr-681"><a href="#Corr-681"><span class="linenos"> 681</span></a>        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr-682"><a href="#Corr-682"><span class="linenos"> 682</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr-683"><a href="#Corr-683"><span class="linenos"> 683</span></a>        <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;fit&quot;</span><span class="p">:</span>
+</span><span id="Corr-684"><a href="#Corr-684"><span class="linenos"> 684</span></a>            <span class="k">def</span> <span class="nf">const_func</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">t</span><span class="p">):</span>
+</span><span id="Corr-685"><a href="#Corr-685"><span class="linenos"> 685</span></a>                <span class="k">return</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr-686"><a href="#Corr-686"><span class="linenos"> 686</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">const_func</span><span class="p">,</span> <span class="n">plateau_range</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr-687"><a href="#Corr-687"><span class="linenos"> 687</span></a>        <span class="k">elif</span> <span class="n">method</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;avg&quot;</span><span class="p">,</span> <span class="s2">&quot;average&quot;</span><span class="p">,</span> <span class="s2">&quot;mean&quot;</span><span class="p">]:</span>
+</span><span id="Corr-688"><a href="#Corr-688"><span class="linenos"> 688</span></a>            <span class="n">returnvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">([</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
+</span><span id="Corr-689"><a href="#Corr-689"><span class="linenos"> 689</span></a>            <span class="k">return</span> <span class="n">returnvalue</span>
+</span><span id="Corr-690"><a href="#Corr-690"><span class="linenos"> 690</span></a>
+</span><span id="Corr-691"><a href="#Corr-691"><span class="linenos"> 691</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-692"><a href="#Corr-692"><span class="linenos"> 692</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsupported plateau method: &quot;</span> <span class="o">+</span> <span class="n">method</span><span class="p">)</span>
+</span><span id="Corr-693"><a href="#Corr-693"><span class="linenos"> 693</span></a>
+</span><span id="Corr-694"><a href="#Corr-694"><span class="linenos"> 694</span></a>    <span class="k">def</span> <span class="nf">set_prange</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prange</span><span class="p">):</span>
+</span><span id="Corr-695"><a href="#Corr-695"><span class="linenos"> 695</span></a>        <span class="sd">&quot;&quot;&quot;Sets the attribute prange of the Corr object.&quot;&quot;&quot;</span>
+</span><span id="Corr-696"><a href="#Corr-696"><span class="linenos"> 696</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">prange</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Corr-697"><a href="#Corr-697"><span class="linenos"> 697</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;prange must be a list or array with two values&quot;</span><span class="p">)</span>
+</span><span id="Corr-698"><a href="#Corr-698"><span class="linenos"> 698</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">((</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">))</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="nb">int</span><span class="p">))):</span>
+</span><span id="Corr-699"><a href="#Corr-699"><span class="linenos"> 699</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must be integers&quot;</span><span class="p">)</span>
+</span><span id="Corr-700"><a href="#Corr-700"><span class="linenos"> 700</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="Corr-701"><a href="#Corr-701"><span class="linenos"> 701</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must define a range in the interval 0,T&quot;</span><span class="p">)</span>
+</span><span id="Corr-702"><a href="#Corr-702"><span class="linenos"> 702</span></a>
+</span><span id="Corr-703"><a href="#Corr-703"><span class="linenos"> 703</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
+</span><span id="Corr-704"><a href="#Corr-704"><span class="linenos"> 704</span></a>        <span class="k">return</span>
+</span><span id="Corr-705"><a href="#Corr-705"><span class="linenos"> 705</span></a>
+</span><span id="Corr-706"><a href="#Corr-706"><span class="linenos"> 706</span></a>    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">y_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">plateau</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fit_res</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ylabel</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr-707"><a href="#Corr-707"><span class="linenos"> 707</span></a>        <span class="sd">&quot;&quot;&quot;Plots the correlator using the tag of the correlator as label if available.</span>
+</span><span id="Corr-708"><a href="#Corr-708"><span class="linenos"> 708</span></a>
+</span><span id="Corr-709"><a href="#Corr-709"><span class="linenos"> 709</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-710"><a href="#Corr-710"><span class="linenos"> 710</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-711"><a href="#Corr-711"><span class="linenos"> 711</span></a><span class="sd">        x_range : list</span>
+</span><span id="Corr-712"><a href="#Corr-712"><span class="linenos"> 712</span></a><span class="sd">            list of two values, determining the range of the x-axis e.g. [4, 8]</span>
+</span><span id="Corr-713"><a href="#Corr-713"><span class="linenos"> 713</span></a><span class="sd">        comp : Corr or list of Corr</span>
+</span><span id="Corr-714"><a href="#Corr-714"><span class="linenos"> 714</span></a><span class="sd">            Correlator or list of correlators which are plotted for comparison.</span>
+</span><span id="Corr-715"><a href="#Corr-715"><span class="linenos"> 715</span></a><span class="sd">            The tags of these correlators are used as labels if available.</span>
+</span><span id="Corr-716"><a href="#Corr-716"><span class="linenos"> 716</span></a><span class="sd">        logscale : bool</span>
+</span><span id="Corr-717"><a href="#Corr-717"><span class="linenos"> 717</span></a><span class="sd">            Sets y-axis to logscale</span>
+</span><span id="Corr-718"><a href="#Corr-718"><span class="linenos"> 718</span></a><span class="sd">        plateau : Obs</span>
+</span><span id="Corr-719"><a href="#Corr-719"><span class="linenos"> 719</span></a><span class="sd">            Plateau value to be visualized in the figure</span>
+</span><span id="Corr-720"><a href="#Corr-720"><span class="linenos"> 720</span></a><span class="sd">        fit_res : Fit_result</span>
+</span><span id="Corr-721"><a href="#Corr-721"><span class="linenos"> 721</span></a><span class="sd">            Fit_result object to be visualized</span>
+</span><span id="Corr-722"><a href="#Corr-722"><span class="linenos"> 722</span></a><span class="sd">        ylabel : str</span>
+</span><span id="Corr-723"><a href="#Corr-723"><span class="linenos"> 723</span></a><span class="sd">            Label for the y-axis</span>
+</span><span id="Corr-724"><a href="#Corr-724"><span class="linenos"> 724</span></a><span class="sd">        save : str</span>
+</span><span id="Corr-725"><a href="#Corr-725"><span class="linenos"> 725</span></a><span class="sd">            path to file in which the figure should be saved</span>
+</span><span id="Corr-726"><a href="#Corr-726"><span class="linenos"> 726</span></a><span class="sd">        auto_gamma : bool</span>
+</span><span id="Corr-727"><a href="#Corr-727"><span class="linenos"> 727</span></a><span class="sd">            Apply the gamma method with standard parameters to all correlators and plateau values before plotting.</span>
+</span><span id="Corr-728"><a href="#Corr-728"><span class="linenos"> 728</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-729"><a href="#Corr-729"><span class="linenos"> 729</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-730"><a href="#Corr-730"><span class="linenos"> 730</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before plotting&quot;</span><span class="p">)</span>
+</span><span id="Corr-731"><a href="#Corr-731"><span class="linenos"> 731</span></a>
+</span><span id="Corr-732"><a href="#Corr-732"><span class="linenos"> 732</span></a>        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr-733"><a href="#Corr-733"><span class="linenos"> 733</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr-734"><a href="#Corr-734"><span class="linenos"> 734</span></a>
+</span><span id="Corr-735"><a href="#Corr-735"><span class="linenos"> 735</span></a>        <span class="k">if</span> <span class="n">x_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-736"><a href="#Corr-736"><span class="linenos"> 736</span></a>            <span class="n">x_range</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="Corr-737"><a href="#Corr-737"><span class="linenos"> 737</span></a>
+</span><span id="Corr-738"><a href="#Corr-738"><span class="linenos"> 738</span></a>        <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Corr-739"><a href="#Corr-739"><span class="linenos"> 739</span></a>        <span class="n">ax1</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
+</span><span id="Corr-740"><a href="#Corr-740"><span class="linenos"> 740</span></a>
+</span><span id="Corr-741"><a href="#Corr-741"><span class="linenos"> 741</span></a>        <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
+</span><span id="Corr-742"><a href="#Corr-742"><span class="linenos"> 742</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="Corr-743"><a href="#Corr-743"><span class="linenos"> 743</span></a>        <span class="k">if</span> <span class="n">logscale</span><span class="p">:</span>
+</span><span id="Corr-744"><a href="#Corr-744"><span class="linenos"> 744</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
+</span><span id="Corr-745"><a href="#Corr-745"><span class="linenos"> 745</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-746"><a href="#Corr-746"><span class="linenos"> 746</span></a>            <span class="k">if</span> <span class="n">y_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-747"><a href="#Corr-747"><span class="linenos"> 747</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="Corr-748"><a href="#Corr-748"><span class="linenos"> 748</span></a>                    <span class="n">y_min</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Corr-749"><a href="#Corr-749"><span class="linenos"> 749</span></a>                    <span class="n">y_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Corr-750"><a href="#Corr-750"><span class="linenos"> 750</span></a>                    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">([</span><span class="n">y_min</span> <span class="o">-</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">),</span> <span class="n">y_max</span> <span class="o">+</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">)])</span>
+</span><span id="Corr-751"><a href="#Corr-751"><span class="linenos"> 751</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="Corr-752"><a href="#Corr-752"><span class="linenos"> 752</span></a>                    <span class="k">pass</span>
+</span><span id="Corr-753"><a href="#Corr-753"><span class="linenos"> 753</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-754"><a href="#Corr-754"><span class="linenos"> 754</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">y_range</span><span class="p">)</span>
+</span><span id="Corr-755"><a href="#Corr-755"><span class="linenos"> 755</span></a>        <span class="k">if</span> <span class="n">comp</span><span class="p">:</span>
+</span><span id="Corr-756"><a href="#Corr-756"><span class="linenos"> 756</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="p">(</span><span class="n">Corr</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
+</span><span id="Corr-757"><a href="#Corr-757"><span class="linenos"> 757</span></a>                <span class="k">for</span> <span class="n">corr</span> <span class="ow">in</span> <span class="n">comp</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="p">[</span><span class="n">comp</span><span class="p">]:</span>
+</span><span id="Corr-758"><a href="#Corr-758"><span class="linenos"> 758</span></a>                    <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr-759"><a href="#Corr-759"><span class="linenos"> 759</span></a>                        <span class="n">corr</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr-760"><a href="#Corr-760"><span class="linenos"> 760</span></a>                    <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="n">corr</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
+</span><span id="Corr-761"><a href="#Corr-761"><span class="linenos"> 761</span></a>                    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">corr</span><span class="o">.</span><span class="n">tag</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
+</span><span id="Corr-762"><a href="#Corr-762"><span class="linenos"> 762</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-763"><a href="#Corr-763"><span class="linenos"> 763</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;comp&#39; must be a correlator or a list of correlators.&quot;</span><span class="p">)</span>
+</span><span id="Corr-764"><a href="#Corr-764"><span class="linenos"> 764</span></a>
+</span><span id="Corr-765"><a href="#Corr-765"><span class="linenos"> 765</span></a>        <span class="k">if</span> <span class="n">plateau</span><span class="p">:</span>
+</span><span id="Corr-766"><a href="#Corr-766"><span class="linenos"> 766</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">plateau</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Corr-767"><a href="#Corr-767"><span class="linenos"> 767</span></a>                <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr-768"><a href="#Corr-768"><span class="linenos"> 768</span></a>                    <span class="n">plateau</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr-769"><a href="#Corr-769"><span class="linenos"> 769</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.6</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">plateau</span><span class="p">))</span>
+</span><span id="Corr-770"><a href="#Corr-770"><span class="linenos"> 770</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">axhspan</span><span class="p">(</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
+</span><span id="Corr-771"><a href="#Corr-771"><span class="linenos"> 771</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-772"><a href="#Corr-772"><span class="linenos"> 772</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;plateau&#39; must be an Obs&quot;</span><span class="p">)</span>
+</span><span id="Corr-773"><a href="#Corr-773"><span class="linenos"> 773</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="Corr-774"><a href="#Corr-774"><span class="linenos"> 774</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Corr-775"><a href="#Corr-775"><span class="linenos"> 775</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Corr-776"><a href="#Corr-776"><span class="linenos"> 776</span></a>
+</span><span id="Corr-777"><a href="#Corr-777"><span class="linenos"> 777</span></a>        <span class="k">if</span> <span class="n">fit_res</span><span class="p">:</span>
+</span><span id="Corr-778"><a href="#Corr-778"><span class="linenos"> 778</span></a>            <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">)</span>
+</span><span id="Corr-779"><a href="#Corr-779"><span class="linenos"> 779</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span>
+</span><span id="Corr-780"><a href="#Corr-780"><span class="linenos"> 780</span></a>                     <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_function</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span>
+</span><span id="Corr-781"><a href="#Corr-781"><span class="linenos"> 781</span></a>                     <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="Corr-782"><a href="#Corr-782"><span class="linenos"> 782</span></a>
+</span><span id="Corr-783"><a href="#Corr-783"><span class="linenos"> 783</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
+</span><span id="Corr-784"><a href="#Corr-784"><span class="linenos"> 784</span></a>        <span class="k">if</span> <span class="n">ylabel</span><span class="p">:</span>
+</span><span id="Corr-785"><a href="#Corr-785"><span class="linenos"> 785</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="n">ylabel</span><span class="p">)</span>
+</span><span id="Corr-786"><a href="#Corr-786"><span class="linenos"> 786</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">,</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">])</span>
+</span><span id="Corr-787"><a href="#Corr-787"><span class="linenos"> 787</span></a>
+</span><span id="Corr-788"><a href="#Corr-788"><span class="linenos"> 788</span></a>        <span class="n">handles</span><span class="p">,</span> <span class="n">labels</span> <span class="o">=</span> <span class="n">ax1</span><span class="o">.</span><span class="n">get_legend_handles_labels</span><span class="p">()</span>
+</span><span id="Corr-789"><a href="#Corr-789"><span class="linenos"> 789</span></a>        <span class="k">if</span> <span class="n">labels</span><span class="p">:</span>
+</span><span id="Corr-790"><a href="#Corr-790"><span class="linenos"> 790</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="Corr-791"><a href="#Corr-791"><span class="linenos"> 791</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Corr-792"><a href="#Corr-792"><span class="linenos"> 792</span></a>
+</span><span id="Corr-793"><a href="#Corr-793"><span class="linenos"> 793</span></a>        <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="Corr-794"><a href="#Corr-794"><span class="linenos"> 794</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">save</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="Corr-795"><a href="#Corr-795"><span class="linenos"> 795</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
+</span><span id="Corr-796"><a href="#Corr-796"><span class="linenos"> 796</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-797"><a href="#Corr-797"><span class="linenos"> 797</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;save&#39; has to be a string.&quot;</span><span class="p">)</span>
+</span><span id="Corr-798"><a href="#Corr-798"><span class="linenos"> 798</span></a>
+</span><span id="Corr-799"><a href="#Corr-799"><span class="linenos"> 799</span></a>    <span class="k">def</span> <span class="nf">spaghetti_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="Corr-800"><a href="#Corr-800"><span class="linenos"> 800</span></a>        <span class="sd">&quot;&quot;&quot;Produces a spaghetti plot of the correlator suited to monitor exceptional configurations.</span>
+</span><span id="Corr-801"><a href="#Corr-801"><span class="linenos"> 801</span></a>
+</span><span id="Corr-802"><a href="#Corr-802"><span class="linenos"> 802</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-803"><a href="#Corr-803"><span class="linenos"> 803</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-804"><a href="#Corr-804"><span class="linenos"> 804</span></a><span class="sd">        logscale : bool</span>
+</span><span id="Corr-805"><a href="#Corr-805"><span class="linenos"> 805</span></a><span class="sd">            Determines whether the scale of the y-axis is logarithmic or standard.</span>
+</span><span id="Corr-806"><a href="#Corr-806"><span class="linenos"> 806</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-807"><a href="#Corr-807"><span class="linenos"> 807</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-808"><a href="#Corr-808"><span class="linenos"> 808</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator needs to be projected first.&quot;</span><span class="p">)</span>
+</span><span id="Corr-809"><a href="#Corr-809"><span class="linenos"> 809</span></a>
+</span><span id="Corr-810"><a href="#Corr-810"><span class="linenos"> 810</span></a>        <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]))</span>
+</span><span id="Corr-811"><a href="#Corr-811"><span class="linenos"> 811</span></a>        <span class="n">x0_vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">n</span> <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr-812"><a href="#Corr-812"><span class="linenos"> 812</span></a>
+</span><span id="Corr-813"><a href="#Corr-813"><span class="linenos"> 813</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
+</span><span id="Corr-814"><a href="#Corr-814"><span class="linenos"> 814</span></a>            <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr-815"><a href="#Corr-815"><span class="linenos"> 815</span></a>
+</span><span id="Corr-816"><a href="#Corr-816"><span class="linenos"> 816</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Corr-817"><a href="#Corr-817"><span class="linenos"> 817</span></a>            <span class="n">ax</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
+</span><span id="Corr-818"><a href="#Corr-818"><span class="linenos"> 818</span></a>            <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
+</span><span id="Corr-819"><a href="#Corr-819"><span class="linenos"> 819</span></a>                <span class="n">ax</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x0_vals</span><span class="p">,</span> <span class="n">dat</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="Corr-820"><a href="#Corr-820"><span class="linenos"> 820</span></a>
+</span><span id="Corr-821"><a href="#Corr-821"><span class="linenos"> 821</span></a>            <span class="k">if</span> <span class="n">logscale</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="Corr-822"><a href="#Corr-822"><span class="linenos"> 822</span></a>                <span class="n">ax</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
+</span><span id="Corr-823"><a href="#Corr-823"><span class="linenos"> 823</span></a>
+</span><span id="Corr-824"><a href="#Corr-824"><span class="linenos"> 824</span></a>            <span class="n">ax</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
+</span><span id="Corr-825"><a href="#Corr-825"><span class="linenos"> 825</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="Corr-826"><a href="#Corr-826"><span class="linenos"> 826</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Corr-827"><a href="#Corr-827"><span class="linenos"> 827</span></a>
+</span><span id="Corr-828"><a href="#Corr-828"><span class="linenos"> 828</span></a>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr-829"><a href="#Corr-829"><span class="linenos"> 829</span></a>        <span class="sd">&quot;&quot;&quot;Dumps the Corr into a file of chosen type</span>
+</span><span id="Corr-830"><a href="#Corr-830"><span class="linenos"> 830</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr-831"><a href="#Corr-831"><span class="linenos"> 831</span></a><span class="sd">        ----------</span>
+</span><span id="Corr-832"><a href="#Corr-832"><span class="linenos"> 832</span></a><span class="sd">        filename : str</span>
+</span><span id="Corr-833"><a href="#Corr-833"><span class="linenos"> 833</span></a><span class="sd">            Name of the file to be saved.</span>
+</span><span id="Corr-834"><a href="#Corr-834"><span class="linenos"> 834</span></a><span class="sd">        datatype : str</span>
+</span><span id="Corr-835"><a href="#Corr-835"><span class="linenos"> 835</span></a><span class="sd">            Format of the exported file. Supported formats include</span>
+</span><span id="Corr-836"><a href="#Corr-836"><span class="linenos"> 836</span></a><span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
+</span><span id="Corr-837"><a href="#Corr-837"><span class="linenos"> 837</span></a><span class="sd">        path : str</span>
+</span><span id="Corr-838"><a href="#Corr-838"><span class="linenos"> 838</span></a><span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="Corr-839"><a href="#Corr-839"><span class="linenos"> 839</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr-840"><a href="#Corr-840"><span class="linenos"> 840</span></a>        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
+</span><span id="Corr-841"><a href="#Corr-841"><span class="linenos"> 841</span></a>            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
+</span><span id="Corr-842"><a href="#Corr-842"><span class="linenos"> 842</span></a>            <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="Corr-843"><a href="#Corr-843"><span class="linenos"> 843</span></a>                <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
+</span><span id="Corr-844"><a href="#Corr-844"><span class="linenos"> 844</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-845"><a href="#Corr-845"><span class="linenos"> 845</span></a>                <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
+</span><span id="Corr-846"><a href="#Corr-846"><span class="linenos"> 846</span></a>            <span class="n">dump_to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_name</span><span class="p">)</span>
+</span><span id="Corr-847"><a href="#Corr-847"><span class="linenos"> 847</span></a>        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
+</span><span id="Corr-848"><a href="#Corr-848"><span class="linenos"> 848</span></a>            <span class="n">dump_object</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="Corr-849"><a href="#Corr-849"><span class="linenos"> 849</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-850"><a href="#Corr-850"><span class="linenos"> 850</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
+</span><span id="Corr-851"><a href="#Corr-851"><span class="linenos"> 851</span></a>
+</span><span id="Corr-852"><a href="#Corr-852"><span class="linenos"> 852</span></a>    <span class="k">def</span> <span class="nf">print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
+</span><span id="Corr-853"><a href="#Corr-853"><span class="linenos"> 853</span></a>        <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">(</span><span class="nb">range</span><span class="p">))</span>
+</span><span id="Corr-854"><a href="#Corr-854"><span class="linenos"> 854</span></a>
+</span><span id="Corr-855"><a href="#Corr-855"><span class="linenos"> 855</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
+</span><span id="Corr-856"><a href="#Corr-856"><span class="linenos"> 856</span></a>        <span class="n">content_string</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+</span><span id="Corr-857"><a href="#Corr-857"><span class="linenos"> 857</span></a>
+</span><span id="Corr-858"><a href="#Corr-858"><span class="linenos"> 858</span></a>        <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Corr T=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; N=&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>  <span class="c1"># +&quot; filled with&quot;+ str(type(self.content[0][0])) there should be a good solution here</span>
+</span><span id="Corr-859"><a href="#Corr-859"><span class="linenos"> 859</span></a>
+</span><span id="Corr-860"><a href="#Corr-860"><span class="linenos"> 860</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-861"><a href="#Corr-861"><span class="linenos"> 861</span></a>            <span class="n">content_string</span> <span class="o">+=</span> <span class="s2">&quot;Description: &quot;</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span>
+</span><span id="Corr-862"><a href="#Corr-862"><span class="linenos"> 862</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr-863"><a href="#Corr-863"><span class="linenos"> 863</span></a>            <span class="k">return</span> <span class="n">content_string</span>
+</span><span id="Corr-864"><a href="#Corr-864"><span class="linenos"> 864</span></a>
+</span><span id="Corr-865"><a href="#Corr-865"><span class="linenos"> 865</span></a>        <span class="k">if</span> <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr-866"><a href="#Corr-866"><span class="linenos"> 866</span></a>            <span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="Corr-867"><a href="#Corr-867"><span class="linenos"> 867</span></a>        <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;x0/a</span><span class="se">\t</span><span class="s1">Corr(x0/a)</span><span class="se">\n</span><span class="s1">------------------</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Corr-868"><a href="#Corr-868"><span class="linenos"> 868</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">sub_corr</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="nb">range</span><span class="p">[</span><span class="mi">1</span><span class="p">]]):</span>
+</span><span id="Corr-869"><a href="#Corr-869"><span class="linenos"> 869</span></a>            <span class="k">if</span> <span class="n">sub_corr</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-870"><a href="#Corr-870"><span class="linenos"> 870</span></a>                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Corr-871"><a href="#Corr-871"><span class="linenos"> 871</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-872"><a href="#Corr-872"><span class="linenos"> 872</span></a>                <span class="n">content_string</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="nb">range</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="Corr-873"><a href="#Corr-873"><span class="linenos"> 873</span></a>                <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">sub_corr</span><span class="p">:</span>
+</span><span id="Corr-874"><a href="#Corr-874"><span class="linenos"> 874</span></a>                    <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">element</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="Corr-875"><a href="#Corr-875"><span class="linenos"> 875</span></a>                <span class="n">content_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Corr-876"><a href="#Corr-876"><span class="linenos"> 876</span></a>        <span class="k">return</span> <span class="n">content_string</span>
+</span><span id="Corr-877"><a href="#Corr-877"><span class="linenos"> 877</span></a>
+</span><span id="Corr-878"><a href="#Corr-878"><span class="linenos"> 878</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-879"><a href="#Corr-879"><span class="linenos"> 879</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
+</span><span id="Corr-880"><a href="#Corr-880"><span class="linenos"> 880</span></a>
+</span><span id="Corr-881"><a href="#Corr-881"><span class="linenos"> 881</span></a>    <span class="c1"># We define the basic operations, that can be performed with correlators.</span>
+</span><span id="Corr-882"><a href="#Corr-882"><span class="linenos"> 882</span></a>    <span class="c1"># While */+- get defined here, they only work for Corr*Obs and not Obs*Corr.</span>
+</span><span id="Corr-883"><a href="#Corr-883"><span class="linenos"> 883</span></a>    <span class="c1"># This is because Obs*Corr checks Obs.__mul__ first and does not catch an exception.</span>
+</span><span id="Corr-884"><a href="#Corr-884"><span class="linenos"> 884</span></a>    <span class="c1"># One could try and tell Obs to check if the y in __mul__ is a Corr and</span>
+</span><span id="Corr-885"><a href="#Corr-885"><span class="linenos"> 885</span></a>
+</span><span id="Corr-886"><a href="#Corr-886"><span class="linenos"> 886</span></a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-887"><a href="#Corr-887"><span class="linenos"> 887</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="Corr-888"><a href="#Corr-888"><span class="linenos"> 888</span></a>            <span class="k">if</span> <span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">!=</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">)):</span>
+</span><span id="Corr-889"><a href="#Corr-889"><span class="linenos"> 889</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Addition of Corrs with different shape&quot;</span><span class="p">)</span>
+</span><span id="Corr-890"><a href="#Corr-890"><span class="linenos"> 890</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-891"><a href="#Corr-891"><span class="linenos"> 891</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-892"><a href="#Corr-892"><span class="linenos"> 892</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-893"><a href="#Corr-893"><span class="linenos"> 893</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-894"><a href="#Corr-894"><span class="linenos"> 894</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-895"><a href="#Corr-895"><span class="linenos"> 895</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr-896"><a href="#Corr-896"><span class="linenos"> 896</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="Corr-897"><a href="#Corr-897"><span class="linenos"> 897</span></a>
+</span><span id="Corr-898"><a href="#Corr-898"><span class="linenos"> 898</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="Corr-899"><a href="#Corr-899"><span class="linenos"> 899</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-900"><a href="#Corr-900"><span class="linenos"> 900</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-901"><a href="#Corr-901"><span class="linenos"> 901</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-902"><a href="#Corr-902"><span class="linenos"> 902</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-903"><a href="#Corr-903"><span class="linenos"> 903</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-904"><a href="#Corr-904"><span class="linenos"> 904</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="Corr-905"><a href="#Corr-905"><span class="linenos"> 905</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-906"><a href="#Corr-906"><span class="linenos"> 906</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Corr-907"><a href="#Corr-907"><span class="linenos"> 907</span></a>            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
+</span><span id="Corr-908"><a href="#Corr-908"><span class="linenos"> 908</span></a>                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">+</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
+</span><span id="Corr-909"><a href="#Corr-909"><span class="linenos"> 909</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-910"><a href="#Corr-910"><span class="linenos"> 910</span></a>                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
+</span><span id="Corr-911"><a href="#Corr-911"><span class="linenos"> 911</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-912"><a href="#Corr-912"><span class="linenos"> 912</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr + wrong type&quot;</span><span class="p">)</span>
+</span><span id="Corr-913"><a href="#Corr-913"><span class="linenos"> 913</span></a>
+</span><span id="Corr-914"><a href="#Corr-914"><span class="linenos"> 914</span></a>    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-915"><a href="#Corr-915"><span class="linenos"> 915</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="Corr-916"><a href="#Corr-916"><span class="linenos"> 916</span></a>            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-917"><a href="#Corr-917"><span class="linenos"> 917</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
+</span><span id="Corr-918"><a href="#Corr-918"><span class="linenos"> 918</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-919"><a href="#Corr-919"><span class="linenos"> 919</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-920"><a href="#Corr-920"><span class="linenos"> 920</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-921"><a href="#Corr-921"><span class="linenos"> 921</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-922"><a href="#Corr-922"><span class="linenos"> 922</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-923"><a href="#Corr-923"><span class="linenos"> 923</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr-924"><a href="#Corr-924"><span class="linenos"> 924</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="Corr-925"><a href="#Corr-925"><span class="linenos"> 925</span></a>
+</span><span id="Corr-926"><a href="#Corr-926"><span class="linenos"> 926</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="Corr-927"><a href="#Corr-927"><span class="linenos"> 927</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-928"><a href="#Corr-928"><span class="linenos"> 928</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-929"><a href="#Corr-929"><span class="linenos"> 929</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-930"><a href="#Corr-930"><span class="linenos"> 930</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-931"><a href="#Corr-931"><span class="linenos"> 931</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-932"><a href="#Corr-932"><span class="linenos"> 932</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="Corr-933"><a href="#Corr-933"><span class="linenos"> 933</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-934"><a href="#Corr-934"><span class="linenos"> 934</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Corr-935"><a href="#Corr-935"><span class="linenos"> 935</span></a>            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
+</span><span id="Corr-936"><a href="#Corr-936"><span class="linenos"> 936</span></a>                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">*</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
+</span><span id="Corr-937"><a href="#Corr-937"><span class="linenos"> 937</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-938"><a href="#Corr-938"><span class="linenos"> 938</span></a>                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
+</span><span id="Corr-939"><a href="#Corr-939"><span class="linenos"> 939</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-940"><a href="#Corr-940"><span class="linenos"> 940</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Corr * wrong type&quot;</span><span class="p">)</span>
+</span><span id="Corr-941"><a href="#Corr-941"><span class="linenos"> 941</span></a>
+</span><span id="Corr-942"><a href="#Corr-942"><span class="linenos"> 942</span></a>    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-943"><a href="#Corr-943"><span class="linenos"> 943</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="Corr-944"><a href="#Corr-944"><span class="linenos"> 944</span></a>            <span class="k">if</span> <span class="ow">not</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">or</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">==</span> <span class="n">y</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-945"><a href="#Corr-945"><span class="linenos"> 945</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multiplication of Corr object requires N=N or N=1 and T=T&quot;</span><span class="p">)</span>
+</span><span id="Corr-946"><a href="#Corr-946"><span class="linenos"> 946</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-947"><a href="#Corr-947"><span class="linenos"> 947</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-948"><a href="#Corr-948"><span class="linenos"> 948</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-949"><a href="#Corr-949"><span class="linenos"> 949</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-950"><a href="#Corr-950"><span class="linenos"> 950</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-951"><a href="#Corr-951"><span class="linenos"> 951</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr-952"><a href="#Corr-952"><span class="linenos"> 952</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-953"><a href="#Corr-953"><span class="linenos"> 953</span></a>                <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-954"><a href="#Corr-954"><span class="linenos"> 954</span></a>                    <span class="k">continue</span>
+</span><span id="Corr-955"><a href="#Corr-955"><span class="linenos"> 955</span></a>                <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
+</span><span id="Corr-956"><a href="#Corr-956"><span class="linenos"> 956</span></a>                    <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Corr-957"><a href="#Corr-957"><span class="linenos"> 957</span></a>
+</span><span id="Corr-958"><a href="#Corr-958"><span class="linenos"> 958</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
+</span><span id="Corr-959"><a href="#Corr-959"><span class="linenos"> 959</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Division returns completely undefined correlator&quot;</span><span class="p">)</span>
+</span><span id="Corr-960"><a href="#Corr-960"><span class="linenos"> 960</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="Corr-961"><a href="#Corr-961"><span class="linenos"> 961</span></a>
+</span><span id="Corr-962"><a href="#Corr-962"><span class="linenos"> 962</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="Corr-963"><a href="#Corr-963"><span class="linenos"> 963</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Corr-964"><a href="#Corr-964"><span class="linenos"> 964</span></a>                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr-965"><a href="#Corr-965"><span class="linenos"> 965</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="Corr-966"><a href="#Corr-966"><span class="linenos"> 966</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="Corr-967"><a href="#Corr-967"><span class="linenos"> 967</span></a>                <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">is_zero</span><span class="p">():</span>
+</span><span id="Corr-968"><a href="#Corr-968"><span class="linenos"> 968</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="Corr-969"><a href="#Corr-969"><span class="linenos"> 969</span></a>
+</span><span id="Corr-970"><a href="#Corr-970"><span class="linenos"> 970</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-971"><a href="#Corr-971"><span class="linenos"> 971</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-972"><a href="#Corr-972"><span class="linenos"> 972</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-973"><a href="#Corr-973"><span class="linenos"> 973</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-974"><a href="#Corr-974"><span class="linenos"> 974</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-975"><a href="#Corr-975"><span class="linenos"> 975</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="Corr-976"><a href="#Corr-976"><span class="linenos"> 976</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-977"><a href="#Corr-977"><span class="linenos"> 977</span></a>
+</span><span id="Corr-978"><a href="#Corr-978"><span class="linenos"> 978</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+</span><span id="Corr-979"><a href="#Corr-979"><span class="linenos"> 979</span></a>            <span class="k">if</span> <span class="n">y</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr-980"><a href="#Corr-980"><span class="linenos"> 980</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Division by zero will return undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="Corr-981"><a href="#Corr-981"><span class="linenos"> 981</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr-982"><a href="#Corr-982"><span class="linenos"> 982</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-983"><a href="#Corr-983"><span class="linenos"> 983</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr-984"><a href="#Corr-984"><span class="linenos"> 984</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr-985"><a href="#Corr-985"><span class="linenos"> 985</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-986"><a href="#Corr-986"><span class="linenos"> 986</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="Corr-987"><a href="#Corr-987"><span class="linenos"> 987</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-988"><a href="#Corr-988"><span class="linenos"> 988</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Corr-989"><a href="#Corr-989"><span class="linenos"> 989</span></a>            <span class="k">if</span> <span class="n">y</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">,):</span>
+</span><span id="Corr-990"><a href="#Corr-990"><span class="linenos"> 990</span></a>                <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span><span class="o">.</span><span class="n">T</span><span class="p">))</span>
+</span><span id="Corr-991"><a href="#Corr-991"><span class="linenos"> 991</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-992"><a href="#Corr-992"><span class="linenos"> 992</span></a>                <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;operands could not be broadcast together&quot;</span><span class="p">)</span>
+</span><span id="Corr-993"><a href="#Corr-993"><span class="linenos"> 993</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-994"><a href="#Corr-994"><span class="linenos"> 994</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Corr / wrong type&#39;</span><span class="p">)</span>
+</span><span id="Corr-995"><a href="#Corr-995"><span class="linenos"> 995</span></a>
+</span><span id="Corr-996"><a href="#Corr-996"><span class="linenos"> 996</span></a>    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-997"><a href="#Corr-997"><span class="linenos"> 997</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="o">-</span><span class="mf">1.</span> <span class="o">*</span> <span class="n">item</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-998"><a href="#Corr-998"><span class="linenos"> 998</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-999"><a href="#Corr-999"><span class="linenos"> 999</span></a>
+</span><span id="Corr-1000"><a href="#Corr-1000"><span class="linenos">1000</span></a>    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-1001"><a href="#Corr-1001"><span class="linenos">1001</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="p">(</span><span class="o">-</span><span class="n">y</span><span class="p">)</span>
+</span><span id="Corr-1002"><a href="#Corr-1002"><span class="linenos">1002</span></a>
+</span><span id="Corr-1003"><a href="#Corr-1003"><span class="linenos">1003</span></a>    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-1004"><a href="#Corr-1004"><span class="linenos">1004</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">CObs</span><span class="p">)):</span>
+</span><span id="Corr-1005"><a href="#Corr-1005"><span class="linenos">1005</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="o">**</span><span class="n">y</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-1006"><a href="#Corr-1006"><span class="linenos">1006</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-1007"><a href="#Corr-1007"><span class="linenos">1007</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-1008"><a href="#Corr-1008"><span class="linenos">1008</span></a>            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Type of exponent not supported&#39;</span><span class="p">)</span>
+</span><span id="Corr-1009"><a href="#Corr-1009"><span class="linenos">1009</span></a>
+</span><span id="Corr-1010"><a href="#Corr-1010"><span class="linenos">1010</span></a>    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1011"><a href="#Corr-1011"><span class="linenos">1011</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-1012"><a href="#Corr-1012"><span class="linenos">1012</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-1013"><a href="#Corr-1013"><span class="linenos">1013</span></a>
+</span><span id="Corr-1014"><a href="#Corr-1014"><span class="linenos">1014</span></a>    <span class="c1"># The numpy functions:</span>
+</span><span id="Corr-1015"><a href="#Corr-1015"><span class="linenos">1015</span></a>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1016"><a href="#Corr-1016"><span class="linenos">1016</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">**</span><span class="mf">0.5</span>
+</span><span id="Corr-1017"><a href="#Corr-1017"><span class="linenos">1017</span></a>
+</span><span id="Corr-1018"><a href="#Corr-1018"><span class="linenos">1018</span></a>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1019"><a href="#Corr-1019"><span class="linenos">1019</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-1020"><a href="#Corr-1020"><span class="linenos">1020</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-1021"><a href="#Corr-1021"><span class="linenos">1021</span></a>
+</span><span id="Corr-1022"><a href="#Corr-1022"><span class="linenos">1022</span></a>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1023"><a href="#Corr-1023"><span class="linenos">1023</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-1024"><a href="#Corr-1024"><span class="linenos">1024</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span><span id="Corr-1025"><a href="#Corr-1025"><span class="linenos">1025</span></a>
+</span><span id="Corr-1026"><a href="#Corr-1026"><span class="linenos">1026</span></a>    <span class="k">def</span> <span class="nf">_apply_func_to_corr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">func</span><span class="p">):</span>
+</span><span id="Corr-1027"><a href="#Corr-1027"><span class="linenos">1027</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">func</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr-1028"><a href="#Corr-1028"><span class="linenos">1028</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr-1029"><a href="#Corr-1029"><span class="linenos">1029</span></a>            <span class="k">if</span> <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr-1030"><a href="#Corr-1030"><span class="linenos">1030</span></a>                <span class="k">continue</span>
+</span><span id="Corr-1031"><a href="#Corr-1031"><span class="linenos">1031</span></a>            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">])</span><span class="o">.</span><span class="n">value</span><span class="p">):</span>
+</span><span id="Corr-1032"><a href="#Corr-1032"><span class="linenos">1032</span></a>                <span class="n">newcontent</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Corr-1033"><a href="#Corr-1033"><span class="linenos">1033</span></a>        <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">]):</span>
+</span><span id="Corr-1034"><a href="#Corr-1034"><span class="linenos">1034</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Operation returns undefined correlator&#39;</span><span class="p">)</span>
+</span><span id="Corr-1035"><a href="#Corr-1035"><span class="linenos">1035</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span><span id="Corr-1036"><a href="#Corr-1036"><span class="linenos">1036</span></a>
+</span><span id="Corr-1037"><a href="#Corr-1037"><span class="linenos">1037</span></a>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1038"><a href="#Corr-1038"><span class="linenos">1038</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">)</span>
+</span><span id="Corr-1039"><a href="#Corr-1039"><span class="linenos">1039</span></a>
+</span><span id="Corr-1040"><a href="#Corr-1040"><span class="linenos">1040</span></a>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1041"><a href="#Corr-1041"><span class="linenos">1041</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">)</span>
+</span><span id="Corr-1042"><a href="#Corr-1042"><span class="linenos">1042</span></a>
+</span><span id="Corr-1043"><a href="#Corr-1043"><span class="linenos">1043</span></a>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1044"><a href="#Corr-1044"><span class="linenos">1044</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">)</span>
+</span><span id="Corr-1045"><a href="#Corr-1045"><span class="linenos">1045</span></a>
+</span><span id="Corr-1046"><a href="#Corr-1046"><span class="linenos">1046</span></a>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1047"><a href="#Corr-1047"><span class="linenos">1047</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">)</span>
+</span><span id="Corr-1048"><a href="#Corr-1048"><span class="linenos">1048</span></a>
+</span><span id="Corr-1049"><a href="#Corr-1049"><span class="linenos">1049</span></a>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1050"><a href="#Corr-1050"><span class="linenos">1050</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">)</span>
+</span><span id="Corr-1051"><a href="#Corr-1051"><span class="linenos">1051</span></a>
+</span><span id="Corr-1052"><a href="#Corr-1052"><span class="linenos">1052</span></a>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1053"><a href="#Corr-1053"><span class="linenos">1053</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">)</span>
+</span><span id="Corr-1054"><a href="#Corr-1054"><span class="linenos">1054</span></a>
+</span><span id="Corr-1055"><a href="#Corr-1055"><span class="linenos">1055</span></a>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1056"><a href="#Corr-1056"><span class="linenos">1056</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsin</span><span class="p">)</span>
+</span><span id="Corr-1057"><a href="#Corr-1057"><span class="linenos">1057</span></a>
+</span><span id="Corr-1058"><a href="#Corr-1058"><span class="linenos">1058</span></a>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1059"><a href="#Corr-1059"><span class="linenos">1059</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccos</span><span class="p">)</span>
+</span><span id="Corr-1060"><a href="#Corr-1060"><span class="linenos">1060</span></a>
+</span><span id="Corr-1061"><a href="#Corr-1061"><span class="linenos">1061</span></a>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1062"><a href="#Corr-1062"><span class="linenos">1062</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctan</span><span class="p">)</span>
+</span><span id="Corr-1063"><a href="#Corr-1063"><span class="linenos">1063</span></a>
+</span><span id="Corr-1064"><a href="#Corr-1064"><span class="linenos">1064</span></a>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1065"><a href="#Corr-1065"><span class="linenos">1065</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">)</span>
+</span><span id="Corr-1066"><a href="#Corr-1066"><span class="linenos">1066</span></a>
+</span><span id="Corr-1067"><a href="#Corr-1067"><span class="linenos">1067</span></a>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1068"><a href="#Corr-1068"><span class="linenos">1068</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">)</span>
+</span><span id="Corr-1069"><a href="#Corr-1069"><span class="linenos">1069</span></a>
+</span><span id="Corr-1070"><a href="#Corr-1070"><span class="linenos">1070</span></a>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1071"><a href="#Corr-1071"><span class="linenos">1071</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctanh</span><span class="p">)</span>
+</span><span id="Corr-1072"><a href="#Corr-1072"><span class="linenos">1072</span></a>
+</span><span id="Corr-1073"><a href="#Corr-1073"><span class="linenos">1073</span></a>    <span class="c1"># Right hand side operations (require tweak in main module to work)</span>
+</span><span id="Corr-1074"><a href="#Corr-1074"><span class="linenos">1074</span></a>    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-1075"><a href="#Corr-1075"><span class="linenos">1075</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="Corr-1076"><a href="#Corr-1076"><span class="linenos">1076</span></a>
+</span><span id="Corr-1077"><a href="#Corr-1077"><span class="linenos">1077</span></a>    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-1078"><a href="#Corr-1078"><span class="linenos">1078</span></a>        <span class="k">return</span> <span class="o">-</span><span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="Corr-1079"><a href="#Corr-1079"><span class="linenos">1079</span></a>
+</span><span id="Corr-1080"><a href="#Corr-1080"><span class="linenos">1080</span></a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-1081"><a href="#Corr-1081"><span class="linenos">1081</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
+</span><span id="Corr-1082"><a href="#Corr-1082"><span class="linenos">1082</span></a>
+</span><span id="Corr-1083"><a href="#Corr-1083"><span class="linenos">1083</span></a>    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Corr-1084"><a href="#Corr-1084"><span class="linenos">1084</span></a>        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">/</span> <span class="n">y</span><span class="p">)</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="Corr-1085"><a href="#Corr-1085"><span class="linenos">1085</span></a>
+</span><span id="Corr-1086"><a href="#Corr-1086"><span class="linenos">1086</span></a>    <span class="nd">@property</span>
+</span><span id="Corr-1087"><a href="#Corr-1087"><span class="linenos">1087</span></a>    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1088"><a href="#Corr-1088"><span class="linenos">1088</span></a>        <span class="k">def</span> <span class="nf">return_real</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
+</span><span id="Corr-1089"><a href="#Corr-1089"><span class="linenos">1089</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="Corr-1090"><a href="#Corr-1090"><span class="linenos">1090</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">real</span>
+</span><span id="Corr-1091"><a href="#Corr-1091"><span class="linenos">1091</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-1092"><a href="#Corr-1092"><span class="linenos">1092</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span>
+</span><span id="Corr-1093"><a href="#Corr-1093"><span class="linenos">1093</span></a>
+</span><span id="Corr-1094"><a href="#Corr-1094"><span class="linenos">1094</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_real</span><span class="p">)</span>
+</span><span id="Corr-1095"><a href="#Corr-1095"><span class="linenos">1095</span></a>
+</span><span id="Corr-1096"><a href="#Corr-1096"><span class="linenos">1096</span></a>    <span class="nd">@property</span>
+</span><span id="Corr-1097"><a href="#Corr-1097"><span class="linenos">1097</span></a>    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr-1098"><a href="#Corr-1098"><span class="linenos">1098</span></a>        <span class="k">def</span> <span class="nf">return_imag</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">):</span>
+</span><span id="Corr-1099"><a href="#Corr-1099"><span class="linenos">1099</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs_OR_cobs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="Corr-1100"><a href="#Corr-1100"><span class="linenos">1100</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span><span class="o">.</span><span class="n">imag</span>
+</span><span id="Corr-1101"><a href="#Corr-1101"><span class="linenos">1101</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr-1102"><a href="#Corr-1102"><span class="linenos">1102</span></a>                <span class="k">return</span> <span class="n">obs_OR_cobs</span> <span class="o">*</span> <span class="mi">0</span>  <span class="c1"># So it stays the right type</span>
+</span><span id="Corr-1103"><a href="#Corr-1103"><span class="linenos">1103</span></a>
+</span><span id="Corr-1104"><a href="#Corr-1104"><span class="linenos">1104</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">return_imag</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -2478,80 +2478,80 @@ matrix at every timeslice. Other dependency (eg. spatial) are not supported.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data_input</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">prange</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize a Corr object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        data_input : list or array</span>
-<span class="sd">            list of Obs or list of arrays of Obs or array of Corrs</span>
-<span class="sd">        padding : list, optional</span>
-<span class="sd">            List with two entries where the first labels the padding</span>
-<span class="sd">            at the front of the correlator and the second the padding</span>
-<span class="sd">            at the back.</span>
-<span class="sd">        prange : list, optional</span>
-<span class="sd">            List containing the first and last timeslice of the plateau</span>
-<span class="sd">            region indentified for this correlator.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-
-            <span class="c1"># This only works, if the array fulfills the conditions below</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Incompatible array shape&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;If the input is an array, its elements must be of type pe.Corr&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only construct matrix correlator from single valued correlators&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All input Correlators must be defined over the same timeslices.&quot;</span><span class="p">)</span>
-
-            <span class="n">T</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">T</span>
-            <span class="n">N</span> <span class="o">=</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">input_as_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="nb">any</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
-                        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Input ill-defined at different timeslices. Conversion leads to data loss!&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">array_at_timeslace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">array_at_timeslace</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">][</span><span class="n">t</span><span class="p">]</span>
-                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array_at_timeslace</span><span class="p">)</span>
-            <span class="n">data_input</span> <span class="o">=</span> <span class="n">input_as_list</span>
-
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">data_input</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
-            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="n">_assert_equal_properties</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data_input</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
-
-            <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">])</span> <span class="ow">and</span> <span class="nb">any</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="n">data_input</span>
-                <span class="n">noNull</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)]</span>  <span class="c1"># To check if the matrices are correct for all undefined elements</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Smearing matrices are not NxN&quot;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="p">(</span><span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">noNull</span><span class="p">])):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Items in data_input are not of identical shape.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noNull</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;data_input contains item of wrong type&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Data input was not given as list or correct array&quot;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-
-        <span class="c1"># An undefined timeslice is represented by the None object</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">+</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.__init__-26"><a href="#Corr.__init__-26"><span class="linenos">26</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data_input</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">prange</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.__init__-27"><a href="#Corr.__init__-27"><span class="linenos">27</span></a>        <span class="sd">&quot;&quot;&quot; Initialize a Corr object.</span>
+</span><span id="Corr.__init__-28"><a href="#Corr.__init__-28"><span class="linenos">28</span></a>
+</span><span id="Corr.__init__-29"><a href="#Corr.__init__-29"><span class="linenos">29</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.__init__-30"><a href="#Corr.__init__-30"><span class="linenos">30</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.__init__-31"><a href="#Corr.__init__-31"><span class="linenos">31</span></a><span class="sd">        data_input : list or array</span>
+</span><span id="Corr.__init__-32"><a href="#Corr.__init__-32"><span class="linenos">32</span></a><span class="sd">            list of Obs or list of arrays of Obs or array of Corrs</span>
+</span><span id="Corr.__init__-33"><a href="#Corr.__init__-33"><span class="linenos">33</span></a><span class="sd">        padding : list, optional</span>
+</span><span id="Corr.__init__-34"><a href="#Corr.__init__-34"><span class="linenos">34</span></a><span class="sd">            List with two entries where the first labels the padding</span>
+</span><span id="Corr.__init__-35"><a href="#Corr.__init__-35"><span class="linenos">35</span></a><span class="sd">            at the front of the correlator and the second the padding</span>
+</span><span id="Corr.__init__-36"><a href="#Corr.__init__-36"><span class="linenos">36</span></a><span class="sd">            at the back.</span>
+</span><span id="Corr.__init__-37"><a href="#Corr.__init__-37"><span class="linenos">37</span></a><span class="sd">        prange : list, optional</span>
+</span><span id="Corr.__init__-38"><a href="#Corr.__init__-38"><span class="linenos">38</span></a><span class="sd">            List containing the first and last timeslice of the plateau</span>
+</span><span id="Corr.__init__-39"><a href="#Corr.__init__-39"><span class="linenos">39</span></a><span class="sd">            region indentified for this correlator.</span>
+</span><span id="Corr.__init__-40"><a href="#Corr.__init__-40"><span class="linenos">40</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.__init__-41"><a href="#Corr.__init__-41"><span class="linenos">41</span></a>
+</span><span id="Corr.__init__-42"><a href="#Corr.__init__-42"><span class="linenos">42</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Corr.__init__-43"><a href="#Corr.__init__-43"><span class="linenos">43</span></a>
+</span><span id="Corr.__init__-44"><a href="#Corr.__init__-44"><span class="linenos">44</span></a>            <span class="c1"># This only works, if the array fulfills the conditions below</span>
+</span><span id="Corr.__init__-45"><a href="#Corr.__init__-45"><span class="linenos">45</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr.__init__-46"><a href="#Corr.__init__-46"><span class="linenos">46</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Incompatible array shape&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-47"><a href="#Corr.__init__-47"><span class="linenos">47</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">Corr</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr.__init__-48"><a href="#Corr.__init__-48"><span class="linenos">48</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;If the input is an array, its elements must be of type pe.Corr&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-49"><a href="#Corr.__init__-49"><span class="linenos">49</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr.__init__-50"><a href="#Corr.__init__-50"><span class="linenos">50</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only construct matrix correlator from single valued correlators&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-51"><a href="#Corr.__init__-51"><span class="linenos">51</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.__init__-52"><a href="#Corr.__init__-52"><span class="linenos">52</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All input Correlators must be defined over the same timeslices.&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-53"><a href="#Corr.__init__-53"><span class="linenos">53</span></a>
+</span><span id="Corr.__init__-54"><a href="#Corr.__init__-54"><span class="linenos">54</span></a>            <span class="n">T</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr.__init__-55"><a href="#Corr.__init__-55"><span class="linenos">55</span></a>            <span class="n">N</span> <span class="o">=</span> <span class="n">data_input</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr.__init__-56"><a href="#Corr.__init__-56"><span class="linenos">56</span></a>            <span class="n">input_as_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.__init__-57"><a href="#Corr.__init__-57"><span class="linenos">57</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.__init__-58"><a href="#Corr.__init__-58"><span class="linenos">58</span></a>                <span class="k">if</span> <span class="nb">any</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr.__init__-59"><a href="#Corr.__init__-59"><span class="linenos">59</span></a>                    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([(</span><span class="n">item</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="o">.</span><span class="n">flatten</span><span class="p">()]):</span>
+</span><span id="Corr.__init__-60"><a href="#Corr.__init__-60"><span class="linenos">60</span></a>                        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Input ill-defined at different timeslices. Conversion leads to data loss!&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr.__init__-61"><a href="#Corr.__init__-61"><span class="linenos">61</span></a>                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.__init__-62"><a href="#Corr.__init__-62"><span class="linenos">62</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.__init__-63"><a href="#Corr.__init__-63"><span class="linenos">63</span></a>                    <span class="n">array_at_timeslace</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-64"><a href="#Corr.__init__-64"><span class="linenos">64</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.__init__-65"><a href="#Corr.__init__-65"><span class="linenos">65</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.__init__-66"><a href="#Corr.__init__-66"><span class="linenos">66</span></a>                            <span class="n">array_at_timeslace</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">data_input</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">][</span><span class="n">t</span><span class="p">]</span>
+</span><span id="Corr.__init__-67"><a href="#Corr.__init__-67"><span class="linenos">67</span></a>                    <span class="n">input_as_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array_at_timeslace</span><span class="p">)</span>
+</span><span id="Corr.__init__-68"><a href="#Corr.__init__-68"><span class="linenos">68</span></a>            <span class="n">data_input</span> <span class="o">=</span> <span class="n">input_as_list</span>
+</span><span id="Corr.__init__-69"><a href="#Corr.__init__-69"><span class="linenos">69</span></a>
+</span><span id="Corr.__init__-70"><a href="#Corr.__init__-70"><span class="linenos">70</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data_input</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr.__init__-71"><a href="#Corr.__init__-71"><span class="linenos">71</span></a>
+</span><span id="Corr.__init__-72"><a href="#Corr.__init__-72"><span class="linenos">72</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="Corr.__init__-73"><a href="#Corr.__init__-73"><span class="linenos">73</span></a>                <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">data_input</span><span class="p">)</span>
+</span><span id="Corr.__init__-74"><a href="#Corr.__init__-74"><span class="linenos">74</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
+</span><span id="Corr.__init__-75"><a href="#Corr.__init__-75"><span class="linenos">75</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span><span class="p">))</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="Corr.__init__-76"><a href="#Corr.__init__-76"><span class="linenos">76</span></a>                <span class="n">_assert_equal_properties</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data_input</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
+</span><span id="Corr.__init__-77"><a href="#Corr.__init__-77"><span class="linenos">77</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">item</span><span class="p">])</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]</span>
+</span><span id="Corr.__init__-78"><a href="#Corr.__init__-78"><span class="linenos">78</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="Corr.__init__-79"><a href="#Corr.__init__-79"><span class="linenos">79</span></a>
+</span><span id="Corr.__init__-80"><a href="#Corr.__init__-80"><span class="linenos">80</span></a>            <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="ow">or</span> <span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">])</span> <span class="ow">and</span> <span class="nb">any</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">data_input</span><span class="p">]):</span>
+</span><span id="Corr.__init__-81"><a href="#Corr.__init__-81"><span class="linenos">81</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="n">data_input</span>
+</span><span id="Corr.__init__-82"><a href="#Corr.__init__-82"><span class="linenos">82</span></a>                <span class="n">noNull</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">a</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)]</span>  <span class="c1"># To check if the matrices are correct for all undefined elements</span>
+</span><span id="Corr.__init__-83"><a href="#Corr.__init__-83"><span class="linenos">83</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr.__init__-84"><a href="#Corr.__init__-84"><span class="linenos">84</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr.__init__-85"><a href="#Corr.__init__-85"><span class="linenos">85</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Smearing matrices are not NxN&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-86"><a href="#Corr.__init__-86"><span class="linenos">86</span></a>                <span class="k">if</span> <span class="p">(</span><span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">item</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">noNull</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">noNull</span><span class="p">])):</span>
+</span><span id="Corr.__init__-87"><a href="#Corr.__init__-87"><span class="linenos">87</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Items in data_input are not of identical shape.&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noNull</span><span class="p">))</span>
+</span><span id="Corr.__init__-88"><a href="#Corr.__init__-88"><span class="linenos">88</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.__init__-89"><a href="#Corr.__init__-89"><span class="linenos">89</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;data_input contains item of wrong type&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-90"><a href="#Corr.__init__-90"><span class="linenos">90</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.__init__-91"><a href="#Corr.__init__-91"><span class="linenos">91</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Data input was not given as list or correct array&quot;</span><span class="p">)</span>
+</span><span id="Corr.__init__-92"><a href="#Corr.__init__-92"><span class="linenos">92</span></a>
+</span><span id="Corr.__init__-93"><a href="#Corr.__init__-93"><span class="linenos">93</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Corr.__init__-94"><a href="#Corr.__init__-94"><span class="linenos">94</span></a>
+</span><span id="Corr.__init__-95"><a href="#Corr.__init__-95"><span class="linenos">95</span></a>        <span class="c1"># An undefined timeslice is represented by the None object</span>
+</span><span id="Corr.__init__-96"><a href="#Corr.__init__-96"><span class="linenos">96</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="o">+</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">padding</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="Corr.__init__-97"><a href="#Corr.__init__-97"><span class="linenos">97</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span>
+</span><span id="Corr.__init__-98"><a href="#Corr.__init__-98"><span class="linenos">98</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
+</span></pre></div>
 
         </details>
 
@@ -2594,17 +2594,17 @@ region indentified for this correlator.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Apply the gamma method to the content of the Corr.&quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.gamma_method-119"><a href="#Corr.gamma_method-119"><span class="linenos">119</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr.gamma_method-120"><a href="#Corr.gamma_method-120"><span class="linenos">120</span></a>        <span class="sd">&quot;&quot;&quot;Apply the gamma method to the content of the Corr.&quot;&quot;&quot;</span>
+</span><span id="Corr.gamma_method-121"><a href="#Corr.gamma_method-121"><span class="linenos">121</span></a>        <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
+</span><span id="Corr.gamma_method-122"><a href="#Corr.gamma_method-122"><span class="linenos">122</span></a>            <span class="k">if</span> <span class="ow">not</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.gamma_method-123"><a href="#Corr.gamma_method-123"><span class="linenos">123</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.gamma_method-124"><a href="#Corr.gamma_method-124"><span class="linenos">124</span></a>                    <span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="Corr.gamma_method-125"><a href="#Corr.gamma_method-125"><span class="linenos">125</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.gamma_method-126"><a href="#Corr.gamma_method-126"><span class="linenos">126</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.gamma_method-127"><a href="#Corr.gamma_method-127"><span class="linenos">127</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.gamma_method-128"><a href="#Corr.gamma_method-128"><span class="linenos">128</span></a>                            <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -2623,45 +2623,45 @@ region indentified for this correlator.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">projected</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">vector_l</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vector_r</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;We need to project the Correlator with a Vector to get a single value at each timeslice.</span>
-
-<span class="sd">        The method can use one or two vectors.</span>
-<span class="sd">        If two are specified it returns v1@G@v2 (the order might be very important.)</span>
-<span class="sd">        By default it will return the lowest source, which usually means unsmeared-unsmeared (0,0), but it does not have to</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to project a Corr, that already has N=1.&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">vector_l</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">])</span>
-        <span class="k">elif</span><span class="p">(</span><span class="n">vector_r</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-            <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_l</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
-            <span class="n">vector_r</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_r</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_r</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
-            <span class="n">vector_l</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_l</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">vector_l</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">vector_r</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Vectors are of wrong shape!&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
-                <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">)),</span> <span class="n">vector_r</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">)</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">item</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># There are no checks here yet. There are so many possible scenarios, where this can go wrong.</span>
-            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                    <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">])),</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]])</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.projected-130"><a href="#Corr.projected-130"><span class="linenos">130</span></a>    <span class="k">def</span> <span class="nf">projected</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">vector_l</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vector_r</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr.projected-131"><a href="#Corr.projected-131"><span class="linenos">131</span></a>        <span class="sd">&quot;&quot;&quot;We need to project the Correlator with a Vector to get a single value at each timeslice.</span>
+</span><span id="Corr.projected-132"><a href="#Corr.projected-132"><span class="linenos">132</span></a>
+</span><span id="Corr.projected-133"><a href="#Corr.projected-133"><span class="linenos">133</span></a><span class="sd">        The method can use one or two vectors.</span>
+</span><span id="Corr.projected-134"><a href="#Corr.projected-134"><span class="linenos">134</span></a><span class="sd">        If two are specified it returns v1@G@v2 (the order might be very important.)</span>
+</span><span id="Corr.projected-135"><a href="#Corr.projected-135"><span class="linenos">135</span></a><span class="sd">        By default it will return the lowest source, which usually means unsmeared-unsmeared (0,0), but it does not have to</span>
+</span><span id="Corr.projected-136"><a href="#Corr.projected-136"><span class="linenos">136</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.projected-137"><a href="#Corr.projected-137"><span class="linenos">137</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.projected-138"><a href="#Corr.projected-138"><span class="linenos">138</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to project a Corr, that already has N=1.&quot;</span><span class="p">)</span>
+</span><span id="Corr.projected-139"><a href="#Corr.projected-139"><span class="linenos">139</span></a>
+</span><span id="Corr.projected-140"><a href="#Corr.projected-140"><span class="linenos">140</span></a>        <span class="k">if</span> <span class="n">vector_l</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.projected-141"><a href="#Corr.projected-141"><span class="linenos">141</span></a>            <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="mf">1.</span><span class="p">]</span> <span class="o">+</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.</span><span class="p">])</span>
+</span><span id="Corr.projected-142"><a href="#Corr.projected-142"><span class="linenos">142</span></a>        <span class="k">elif</span><span class="p">(</span><span class="n">vector_r</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.projected-143"><a href="#Corr.projected-143"><span class="linenos">143</span></a>            <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span>
+</span><span id="Corr.projected-144"><a href="#Corr.projected-144"><span class="linenos">144</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr.projected-145"><a href="#Corr.projected-145"><span class="linenos">145</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_l</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr.projected-146"><a href="#Corr.projected-146"><span class="linenos">146</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
+</span><span id="Corr.projected-147"><a href="#Corr.projected-147"><span class="linenos">147</span></a>            <span class="n">vector_r</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_r</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr.projected-148"><a href="#Corr.projected-148"><span class="linenos">148</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_r</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr.projected-149"><a href="#Corr.projected-149"><span class="linenos">149</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">vector_r</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr.projected-150"><a href="#Corr.projected-150"><span class="linenos">150</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Length of vector list must be equal to T&quot;</span><span class="p">)</span>
+</span><span id="Corr.projected-151"><a href="#Corr.projected-151"><span class="linenos">151</span></a>            <span class="n">vector_l</span> <span class="o">=</span> <span class="p">[</span><span class="n">vector_l</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr.projected-152"><a href="#Corr.projected-152"><span class="linenos">152</span></a>
+</span><span id="Corr.projected-153"><a href="#Corr.projected-153"><span class="linenos">153</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">vector_l</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr.projected-154"><a href="#Corr.projected-154"><span class="linenos">154</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">vector_l</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="n">vector_r</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,):</span>
+</span><span id="Corr.projected-155"><a href="#Corr.projected-155"><span class="linenos">155</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Vectors are of wrong shape!&quot;</span><span class="p">)</span>
+</span><span id="Corr.projected-156"><a href="#Corr.projected-156"><span class="linenos">156</span></a>            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
+</span><span id="Corr.projected-157"><a href="#Corr.projected-157"><span class="linenos">157</span></a>                <span class="n">vector_l</span><span class="p">,</span> <span class="n">vector_r</span> <span class="o">=</span> <span class="n">vector_l</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">)),</span> <span class="n">vector_r</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">)</span>
+</span><span id="Corr.projected-158"><a href="#Corr.projected-158"><span class="linenos">158</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">item</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">])</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr.projected-159"><a href="#Corr.projected-159"><span class="linenos">159</span></a>
+</span><span id="Corr.projected-160"><a href="#Corr.projected-160"><span class="linenos">160</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.projected-161"><a href="#Corr.projected-161"><span class="linenos">161</span></a>            <span class="c1"># There are no checks here yet. There are so many possible scenarios, where this can go wrong.</span>
+</span><span id="Corr.projected-162"><a href="#Corr.projected-162"><span class="linenos">162</span></a>            <span class="k">if</span> <span class="n">normalize</span><span class="p">:</span>
+</span><span id="Corr.projected-163"><a href="#Corr.projected-163"><span class="linenos">163</span></a>                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.projected-164"><a href="#Corr.projected-164"><span class="linenos">164</span></a>                    <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">])),</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr.projected-165"><a href="#Corr.projected-165"><span class="linenos">165</span></a>
+</span><span id="Corr.projected-166"><a href="#Corr.projected-166"><span class="linenos">166</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">or</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">vector_l</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">@</span> <span class="n">vector_r</span><span class="p">[</span><span class="n">t</span><span class="p">]])</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)]</span>
+</span><span id="Corr.projected-167"><a href="#Corr.projected-167"><span class="linenos">167</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -2684,21 +2684,21 @@ By default it will return the lowest source, which usually means unsmeared-unsme
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Picks the element [i,j] from every matrix and returns a correlator containing one Obs per timeslice.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        i : int</span>
-<span class="sd">            First index to be picked.</span>
-<span class="sd">        j : int</span>
-<span class="sd">            Second index to be picked.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to pick item from projected Corr&quot;</span><span class="p">)</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.item-169"><a href="#Corr.item-169"><span class="linenos">169</span></a>    <span class="k">def</span> <span class="nf">item</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">):</span>
+</span><span id="Corr.item-170"><a href="#Corr.item-170"><span class="linenos">170</span></a>        <span class="sd">&quot;&quot;&quot;Picks the element [i,j] from every matrix and returns a correlator containing one Obs per timeslice.</span>
+</span><span id="Corr.item-171"><a href="#Corr.item-171"><span class="linenos">171</span></a>
+</span><span id="Corr.item-172"><a href="#Corr.item-172"><span class="linenos">172</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.item-173"><a href="#Corr.item-173"><span class="linenos">173</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.item-174"><a href="#Corr.item-174"><span class="linenos">174</span></a><span class="sd">        i : int</span>
+</span><span id="Corr.item-175"><a href="#Corr.item-175"><span class="linenos">175</span></a><span class="sd">            First index to be picked.</span>
+</span><span id="Corr.item-176"><a href="#Corr.item-176"><span class="linenos">176</span></a><span class="sd">        j : int</span>
+</span><span id="Corr.item-177"><a href="#Corr.item-177"><span class="linenos">177</span></a><span class="sd">            Second index to be picked.</span>
+</span><span id="Corr.item-178"><a href="#Corr.item-178"><span class="linenos">178</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.item-179"><a href="#Corr.item-179"><span class="linenos">179</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.item-180"><a href="#Corr.item-180"><span class="linenos">180</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to pick item from projected Corr&quot;</span><span class="p">)</span>
+</span><span id="Corr.item-181"><a href="#Corr.item-181"><span class="linenos">181</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span><span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">item</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr.item-182"><a href="#Corr.item-182"><span class="linenos">182</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -2726,20 +2726,20 @@ Second index to be picked.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">plottable</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Outputs the correlator in a plotable format.</span>
-
-<span class="sd">        Outputs three lists containing the timeslice index, the value on each</span>
-<span class="sd">        timeslice and the error on each timeslice.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only make Corr[N=1] plottable&quot;</span><span class="p">)</span>
-        <span class="n">x_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">y_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">y_err_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">x_list</span><span class="p">,</span> <span class="n">y_list</span><span class="p">,</span> <span class="n">y_err_list</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.plottable-184"><a href="#Corr.plottable-184"><span class="linenos">184</span></a>    <span class="k">def</span> <span class="nf">plottable</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.plottable-185"><a href="#Corr.plottable-185"><span class="linenos">185</span></a>        <span class="sd">&quot;&quot;&quot;Outputs the correlator in a plotable format.</span>
+</span><span id="Corr.plottable-186"><a href="#Corr.plottable-186"><span class="linenos">186</span></a>
+</span><span id="Corr.plottable-187"><a href="#Corr.plottable-187"><span class="linenos">187</span></a><span class="sd">        Outputs three lists containing the timeslice index, the value on each</span>
+</span><span id="Corr.plottable-188"><a href="#Corr.plottable-188"><span class="linenos">188</span></a><span class="sd">        timeslice and the error on each timeslice.</span>
+</span><span id="Corr.plottable-189"><a href="#Corr.plottable-189"><span class="linenos">189</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.plottable-190"><a href="#Corr.plottable-190"><span class="linenos">190</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.plottable-191"><a href="#Corr.plottable-191"><span class="linenos">191</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only make Corr[N=1] plottable&quot;</span><span class="p">)</span>
+</span><span id="Corr.plottable-192"><a href="#Corr.plottable-192"><span class="linenos">192</span></a>        <span class="n">x_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr.plottable-193"><a href="#Corr.plottable-193"><span class="linenos">193</span></a>        <span class="n">y_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr.plottable-194"><a href="#Corr.plottable-194"><span class="linenos">194</span></a>        <span class="n">y_err_list</span> <span class="o">=</span> <span class="p">[</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">y</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr.plottable-195"><a href="#Corr.plottable-195"><span class="linenos">195</span></a>
+</span><span id="Corr.plottable-196"><a href="#Corr.plottable-196"><span class="linenos">196</span></a>        <span class="k">return</span> <span class="n">x_list</span><span class="p">,</span> <span class="n">y_list</span><span class="p">,</span> <span class="n">y_err_list</span>
+</span></pre></div>
 
         </details>
 
@@ -2761,24 +2761,24 @@ timeslice and the error on each timeslice.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">))</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.symmetric-198"><a href="#Corr.symmetric-198"><span class="linenos">198</span></a>    <span class="k">def</span> <span class="nf">symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.symmetric-199"><a href="#Corr.symmetric-199"><span class="linenos">199</span></a>        <span class="sd">&quot;&quot;&quot; Symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
+</span><span id="Corr.symmetric-200"><a href="#Corr.symmetric-200"><span class="linenos">200</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr.symmetric-201"><a href="#Corr.symmetric-201"><span class="linenos">201</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
+</span><span id="Corr.symmetric-202"><a href="#Corr.symmetric-202"><span class="linenos">202</span></a>
+</span><span id="Corr.symmetric-203"><a href="#Corr.symmetric-203"><span class="linenos">203</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">))</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr.symmetric-204"><a href="#Corr.symmetric-204"><span class="linenos">204</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr.symmetric-205"><a href="#Corr.symmetric-205"><span class="linenos">205</span></a>
+</span><span id="Corr.symmetric-206"><a href="#Corr.symmetric-206"><span class="linenos">206</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="Corr.symmetric-207"><a href="#Corr.symmetric-207"><span class="linenos">207</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.symmetric-208"><a href="#Corr.symmetric-208"><span class="linenos">208</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.symmetric-209"><a href="#Corr.symmetric-209"><span class="linenos">209</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.symmetric-210"><a href="#Corr.symmetric-210"><span class="linenos">210</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.symmetric-211"><a href="#Corr.symmetric-211"><span class="linenos">211</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
+</span><span id="Corr.symmetric-212"><a href="#Corr.symmetric-212"><span class="linenos">212</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.symmetric-213"><a href="#Corr.symmetric-213"><span class="linenos">213</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
+</span><span id="Corr.symmetric-214"><a href="#Corr.symmetric-214"><span class="linenos">214</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -2797,26 +2797,26 @@ timeslice and the error on each timeslice.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">anti_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Anti-symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
-
-        <span class="n">test</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
-        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]):</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be anti-symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.anti_symmetric-216"><a href="#Corr.anti_symmetric-216"><span class="linenos">216</span></a>    <span class="k">def</span> <span class="nf">anti_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.anti_symmetric-217"><a href="#Corr.anti_symmetric-217"><span class="linenos">217</span></a>        <span class="sd">&quot;&quot;&quot;Anti-symmetrize the correlator around x0=0.&quot;&quot;&quot;</span>
+</span><span id="Corr.anti_symmetric-218"><a href="#Corr.anti_symmetric-218"><span class="linenos">218</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr.anti_symmetric-219"><a href="#Corr.anti_symmetric-219"><span class="linenos">219</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can not symmetrize odd T&quot;</span><span class="p">)</span>
+</span><span id="Corr.anti_symmetric-220"><a href="#Corr.anti_symmetric-220"><span class="linenos">220</span></a>
+</span><span id="Corr.anti_symmetric-221"><a href="#Corr.anti_symmetric-221"><span class="linenos">221</span></a>        <span class="n">test</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="Corr.anti_symmetric-222"><a href="#Corr.anti_symmetric-222"><span class="linenos">222</span></a>        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr.anti_symmetric-223"><a href="#Corr.anti_symmetric-223"><span class="linenos">223</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">3</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]):</span>
+</span><span id="Corr.anti_symmetric-224"><a href="#Corr.anti_symmetric-224"><span class="linenos">224</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlator does not seem to be anti-symmetric around x0=0.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr.anti_symmetric-225"><a href="#Corr.anti_symmetric-225"><span class="linenos">225</span></a>
+</span><span id="Corr.anti_symmetric-226"><a href="#Corr.anti_symmetric-226"><span class="linenos">226</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="Corr.anti_symmetric-227"><a href="#Corr.anti_symmetric-227"><span class="linenos">227</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.anti_symmetric-228"><a href="#Corr.anti_symmetric-228"><span class="linenos">228</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.anti_symmetric-229"><a href="#Corr.anti_symmetric-229"><span class="linenos">229</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.anti_symmetric-230"><a href="#Corr.anti_symmetric-230"><span class="linenos">230</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.anti_symmetric-231"><a href="#Corr.anti_symmetric-231"><span class="linenos">231</span></a>                <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">t</span><span class="p">]))</span>
+</span><span id="Corr.anti_symmetric-232"><a href="#Corr.anti_symmetric-232"><span class="linenos">232</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.anti_symmetric-233"><a href="#Corr.anti_symmetric-233"><span class="linenos">233</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr could not be symmetrized: No redundant values&quot;</span><span class="p">)</span>
+</span><span id="Corr.anti_symmetric-234"><a href="#Corr.anti_symmetric-234"><span class="linenos">234</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -2835,14 +2835,14 @@ timeslice and the error on each timeslice.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">matrix_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Symmetrizes the correlator matrices on every timeslice.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">transposed</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">G</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">G</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">G</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-            <span class="k">return</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">transposed</span><span class="p">)</span> <span class="o">+</span> <span class="bp">self</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to symmetrize a correlator matrix, that already has N=1.&quot;</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.matrix_symmetric-236"><a href="#Corr.matrix_symmetric-236"><span class="linenos">236</span></a>    <span class="k">def</span> <span class="nf">matrix_symmetric</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.matrix_symmetric-237"><a href="#Corr.matrix_symmetric-237"><span class="linenos">237</span></a>        <span class="sd">&quot;&quot;&quot;Symmetrizes the correlator matrices on every timeslice.&quot;&quot;&quot;</span>
+</span><span id="Corr.matrix_symmetric-238"><a href="#Corr.matrix_symmetric-238"><span class="linenos">238</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.matrix_symmetric-239"><a href="#Corr.matrix_symmetric-239"><span class="linenos">239</span></a>            <span class="n">transposed</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">G</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">G</span><span class="o">.</span><span class="n">T</span> <span class="k">for</span> <span class="n">G</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr.matrix_symmetric-240"><a href="#Corr.matrix_symmetric-240"><span class="linenos">240</span></a>            <span class="k">return</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">transposed</span><span class="p">)</span> <span class="o">+</span> <span class="bp">self</span><span class="p">)</span>
+</span><span id="Corr.matrix_symmetric-241"><a href="#Corr.matrix_symmetric-241"><span class="linenos">241</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.matrix_symmetric-242"><a href="#Corr.matrix_symmetric-242"><span class="linenos">242</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Trying to symmetrize a correlator matrix, that already has N=1.&quot;</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -2861,66 +2861,66 @@ timeslice and the error on each timeslice.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">GEVP</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Solve the general eigenvalue problem on the current correlator</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        t0 : int</span>
-<span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
-<span class="sd">        ts : int</span>
-<span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
-<span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
-<span class="sd">        state : int</span>
-<span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
-<span class="sd">        sorted_list : string</span>
-<span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
-<span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
-<span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
-<span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">sorted_list</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required if sorted_list=None&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">ts</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr not defined at t0/ts&quot;</span><span class="p">)</span>
-            <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
-            <span class="n">symmetric_corr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">matrix_symmetric</span><span class="p">()</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                    <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-                    <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="p">[</span><span class="n">ts</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-
-            <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
-            <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
-            <span class="k">return</span> <span class="n">sp_vec</span>
-        <span class="k">else</span><span class="p">:</span>
-
-            <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-                            <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-                            <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
-
-                    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvalue&quot;</span><span class="p">:</span>
-                        <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
-                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vec</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vecs</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvector&quot;</span><span class="p">:</span>
-                <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required for the Eigenvector sorting method.&quot;</span><span class="p">)</span>
-                <span class="n">all_vecs</span> <span class="o">=</span> <span class="n">_sort_vectors</span><span class="p">(</span><span class="n">all_vecs</span><span class="p">,</span> <span class="n">ts</span><span class="p">)</span>
-                <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span><span class="p">[</span><span class="n">state</span><span class="p">]</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">all_vecs</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">all_vecs</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.GEVP-244"><a href="#Corr.GEVP-244"><span class="linenos">244</span></a>    <span class="k">def</span> <span class="nf">GEVP</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.GEVP-245"><a href="#Corr.GEVP-245"><span class="linenos">245</span></a>        <span class="sd">&quot;&quot;&quot;Solve the general eigenvalue problem on the current correlator</span>
+</span><span id="Corr.GEVP-246"><a href="#Corr.GEVP-246"><span class="linenos">246</span></a>
+</span><span id="Corr.GEVP-247"><a href="#Corr.GEVP-247"><span class="linenos">247</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.GEVP-248"><a href="#Corr.GEVP-248"><span class="linenos">248</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.GEVP-249"><a href="#Corr.GEVP-249"><span class="linenos">249</span></a><span class="sd">        t0 : int</span>
+</span><span id="Corr.GEVP-250"><a href="#Corr.GEVP-250"><span class="linenos">250</span></a><span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
+</span><span id="Corr.GEVP-251"><a href="#Corr.GEVP-251"><span class="linenos">251</span></a><span class="sd">        ts : int</span>
+</span><span id="Corr.GEVP-252"><a href="#Corr.GEVP-252"><span class="linenos">252</span></a><span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
+</span><span id="Corr.GEVP-253"><a href="#Corr.GEVP-253"><span class="linenos">253</span></a><span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
+</span><span id="Corr.GEVP-254"><a href="#Corr.GEVP-254"><span class="linenos">254</span></a><span class="sd">        state : int</span>
+</span><span id="Corr.GEVP-255"><a href="#Corr.GEVP-255"><span class="linenos">255</span></a><span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
+</span><span id="Corr.GEVP-256"><a href="#Corr.GEVP-256"><span class="linenos">256</span></a><span class="sd">        sorted_list : string</span>
+</span><span id="Corr.GEVP-257"><a href="#Corr.GEVP-257"><span class="linenos">257</span></a><span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
+</span><span id="Corr.GEVP-258"><a href="#Corr.GEVP-258"><span class="linenos">258</span></a><span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
+</span><span id="Corr.GEVP-259"><a href="#Corr.GEVP-259"><span class="linenos">259</span></a><span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
+</span><span id="Corr.GEVP-260"><a href="#Corr.GEVP-260"><span class="linenos">260</span></a><span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
+</span><span id="Corr.GEVP-261"><a href="#Corr.GEVP-261"><span class="linenos">261</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.GEVP-262"><a href="#Corr.GEVP-262"><span class="linenos">262</span></a>        <span class="k">if</span> <span class="n">sorted_list</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.GEVP-263"><a href="#Corr.GEVP-263"><span class="linenos">263</span></a>            <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.GEVP-264"><a href="#Corr.GEVP-264"><span class="linenos">264</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required if sorted_list=None&quot;</span><span class="p">)</span>
+</span><span id="Corr.GEVP-265"><a href="#Corr.GEVP-265"><span class="linenos">265</span></a>            <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">ts</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.GEVP-266"><a href="#Corr.GEVP-266"><span class="linenos">266</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Corr not defined at t0/ts&quot;</span><span class="p">)</span>
+</span><span id="Corr.GEVP-267"><a href="#Corr.GEVP-267"><span class="linenos">267</span></a>            <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
+</span><span id="Corr.GEVP-268"><a href="#Corr.GEVP-268"><span class="linenos">268</span></a>            <span class="n">symmetric_corr</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">matrix_symmetric</span><span class="p">()</span>
+</span><span id="Corr.GEVP-269"><a href="#Corr.GEVP-269"><span class="linenos">269</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.GEVP-270"><a href="#Corr.GEVP-270"><span class="linenos">270</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.GEVP-271"><a href="#Corr.GEVP-271"><span class="linenos">271</span></a>                    <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr.GEVP-272"><a href="#Corr.GEVP-272"><span class="linenos">272</span></a>                    <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">symmetric_corr</span><span class="p">[</span><span class="n">ts</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr.GEVP-273"><a href="#Corr.GEVP-273"><span class="linenos">273</span></a>
+</span><span id="Corr.GEVP-274"><a href="#Corr.GEVP-274"><span class="linenos">274</span></a>            <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
+</span><span id="Corr.GEVP-275"><a href="#Corr.GEVP-275"><span class="linenos">275</span></a>            <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
+</span><span id="Corr.GEVP-276"><a href="#Corr.GEVP-276"><span class="linenos">276</span></a>            <span class="k">return</span> <span class="n">sp_vec</span>
+</span><span id="Corr.GEVP-277"><a href="#Corr.GEVP-277"><span class="linenos">277</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.GEVP-278"><a href="#Corr.GEVP-278"><span class="linenos">278</span></a>
+</span><span id="Corr.GEVP-279"><a href="#Corr.GEVP-279"><span class="linenos">279</span></a>            <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.GEVP-280"><a href="#Corr.GEVP-280"><span class="linenos">280</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.GEVP-281"><a href="#Corr.GEVP-281"><span class="linenos">281</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="Corr.GEVP-282"><a href="#Corr.GEVP-282"><span class="linenos">282</span></a>                    <span class="n">G0</span><span class="p">,</span> <span class="n">Gt</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;double&quot;</span><span class="p">)</span>
+</span><span id="Corr.GEVP-283"><a href="#Corr.GEVP-283"><span class="linenos">283</span></a>                    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.GEVP-284"><a href="#Corr.GEVP-284"><span class="linenos">284</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.GEVP-285"><a href="#Corr.GEVP-285"><span class="linenos">285</span></a>                            <span class="n">G0</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t0</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr.GEVP-286"><a href="#Corr.GEVP-286"><span class="linenos">286</span></a>                            <span class="n">Gt</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Corr.GEVP-287"><a href="#Corr.GEVP-287"><span class="linenos">287</span></a>
+</span><span id="Corr.GEVP-288"><a href="#Corr.GEVP-288"><span class="linenos">288</span></a>                    <span class="n">sp_vecs</span> <span class="o">=</span> <span class="n">_GEVP_solver</span><span class="p">(</span><span class="n">Gt</span><span class="p">,</span> <span class="n">G0</span><span class="p">)</span>
+</span><span id="Corr.GEVP-289"><a href="#Corr.GEVP-289"><span class="linenos">289</span></a>                    <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvalue&quot;</span><span class="p">:</span>
+</span><span id="Corr.GEVP-290"><a href="#Corr.GEVP-290"><span class="linenos">290</span></a>                        <span class="n">sp_vec</span> <span class="o">=</span> <span class="n">sp_vecs</span><span class="p">[</span><span class="n">state</span><span class="p">]</span>
+</span><span id="Corr.GEVP-291"><a href="#Corr.GEVP-291"><span class="linenos">291</span></a>                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vec</span><span class="p">)</span>
+</span><span id="Corr.GEVP-292"><a href="#Corr.GEVP-292"><span class="linenos">292</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.GEVP-293"><a href="#Corr.GEVP-293"><span class="linenos">293</span></a>                        <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">sp_vecs</span><span class="p">)</span>
+</span><span id="Corr.GEVP-294"><a href="#Corr.GEVP-294"><span class="linenos">294</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="Corr.GEVP-295"><a href="#Corr.GEVP-295"><span class="linenos">295</span></a>                    <span class="n">all_vecs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.GEVP-296"><a href="#Corr.GEVP-296"><span class="linenos">296</span></a>            <span class="k">if</span> <span class="n">sorted_list</span> <span class="o">==</span> <span class="s2">&quot;Eigenvector&quot;</span><span class="p">:</span>
+</span><span id="Corr.GEVP-297"><a href="#Corr.GEVP-297"><span class="linenos">297</span></a>                <span class="k">if</span> <span class="p">(</span><span class="n">ts</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.GEVP-298"><a href="#Corr.GEVP-298"><span class="linenos">298</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;ts is required for the Eigenvector sorting method.&quot;</span><span class="p">)</span>
+</span><span id="Corr.GEVP-299"><a href="#Corr.GEVP-299"><span class="linenos">299</span></a>                <span class="n">all_vecs</span> <span class="o">=</span> <span class="n">_sort_vectors</span><span class="p">(</span><span class="n">all_vecs</span><span class="p">,</span> <span class="n">ts</span><span class="p">)</span>
+</span><span id="Corr.GEVP-300"><a href="#Corr.GEVP-300"><span class="linenos">300</span></a>                <span class="n">all_vecs</span> <span class="o">=</span> <span class="p">[</span><span class="n">a</span><span class="p">[</span><span class="n">state</span><span class="p">]</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">all_vecs</span><span class="p">]</span>
+</span><span id="Corr.GEVP-301"><a href="#Corr.GEVP-301"><span class="linenos">301</span></a>
+</span><span id="Corr.GEVP-302"><a href="#Corr.GEVP-302"><span class="linenos">302</span></a>        <span class="k">return</span> <span class="n">all_vecs</span>
+</span></pre></div>
 
         </details>
 
@@ -2956,27 +2956,27 @@ if this argument is set, a list of vectors (len=self.T) is returned. If it is le
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">Eigenvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Determines the eigenvalue of the GEVP by solving and projecting the correlator</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        t0 : int</span>
-<span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
-<span class="sd">        ts : int</span>
-<span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
-<span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
-<span class="sd">        state : int</span>
-<span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
-<span class="sd">        sorted_list : string</span>
-<span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
-<span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
-<span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
-<span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">vec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GEVP</span><span class="p">(</span><span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="n">ts</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="n">sorted_list</span><span class="p">)</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">projected</span><span class="p">(</span><span class="n">vec</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.Eigenvalue-304"><a href="#Corr.Eigenvalue-304"><span class="linenos">304</span></a>    <span class="k">def</span> <span class="nf">Eigenvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.Eigenvalue-305"><a href="#Corr.Eigenvalue-305"><span class="linenos">305</span></a>        <span class="sd">&quot;&quot;&quot;Determines the eigenvalue of the GEVP by solving and projecting the correlator</span>
+</span><span id="Corr.Eigenvalue-306"><a href="#Corr.Eigenvalue-306"><span class="linenos">306</span></a>
+</span><span id="Corr.Eigenvalue-307"><a href="#Corr.Eigenvalue-307"><span class="linenos">307</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.Eigenvalue-308"><a href="#Corr.Eigenvalue-308"><span class="linenos">308</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.Eigenvalue-309"><a href="#Corr.Eigenvalue-309"><span class="linenos">309</span></a><span class="sd">        t0 : int</span>
+</span><span id="Corr.Eigenvalue-310"><a href="#Corr.Eigenvalue-310"><span class="linenos">310</span></a><span class="sd">            The time t0 for G(t)v= lambda G(t_0)v</span>
+</span><span id="Corr.Eigenvalue-311"><a href="#Corr.Eigenvalue-311"><span class="linenos">311</span></a><span class="sd">        ts : int</span>
+</span><span id="Corr.Eigenvalue-312"><a href="#Corr.Eigenvalue-312"><span class="linenos">312</span></a><span class="sd">            fixed time G(t_s)v= lambda G(t_0)v  if return_list=False</span>
+</span><span id="Corr.Eigenvalue-313"><a href="#Corr.Eigenvalue-313"><span class="linenos">313</span></a><span class="sd">            If return_list=True and sorting=Eigenvector it gives a reference point for the sorting method.</span>
+</span><span id="Corr.Eigenvalue-314"><a href="#Corr.Eigenvalue-314"><span class="linenos">314</span></a><span class="sd">        state : int</span>
+</span><span id="Corr.Eigenvalue-315"><a href="#Corr.Eigenvalue-315"><span class="linenos">315</span></a><span class="sd">            The state one is interested in ordered by energy. The lowest state is zero.</span>
+</span><span id="Corr.Eigenvalue-316"><a href="#Corr.Eigenvalue-316"><span class="linenos">316</span></a><span class="sd">        sorted_list : string</span>
+</span><span id="Corr.Eigenvalue-317"><a href="#Corr.Eigenvalue-317"><span class="linenos">317</span></a><span class="sd">            if this argument is set, a list of vectors (len=self.T) is returned. If it is left as None, only one vector is returned.</span>
+</span><span id="Corr.Eigenvalue-318"><a href="#Corr.Eigenvalue-318"><span class="linenos">318</span></a><span class="sd">             &quot;Eigenvalue&quot;  -  The eigenvector is chosen according to which eigenvalue it belongs individually on every timeslice.</span>
+</span><span id="Corr.Eigenvalue-319"><a href="#Corr.Eigenvalue-319"><span class="linenos">319</span></a><span class="sd">             &quot;Eigenvector&quot; -  Use the method described in arXiv:2004.10472 [hep-lat] to find the set of v(t) belonging to the state.</span>
+</span><span id="Corr.Eigenvalue-320"><a href="#Corr.Eigenvalue-320"><span class="linenos">320</span></a><span class="sd">                              The reference state is identified by its eigenvalue at t=ts</span>
+</span><span id="Corr.Eigenvalue-321"><a href="#Corr.Eigenvalue-321"><span class="linenos">321</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.Eigenvalue-322"><a href="#Corr.Eigenvalue-322"><span class="linenos">322</span></a>        <span class="n">vec</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GEVP</span><span class="p">(</span><span class="n">t0</span><span class="p">,</span> <span class="n">ts</span><span class="o">=</span><span class="n">ts</span><span class="p">,</span> <span class="n">state</span><span class="o">=</span><span class="n">state</span><span class="p">,</span> <span class="n">sorted_list</span><span class="o">=</span><span class="n">sorted_list</span><span class="p">)</span>
+</span><span id="Corr.Eigenvalue-323"><a href="#Corr.Eigenvalue-323"><span class="linenos">323</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">projected</span><span class="p">(</span><span class="n">vec</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3012,47 +3012,47 @@ if this argument is set, a list of vectors (len=self.T) is returned. If it is le
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">Hankel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">,</span> <span class="n">periodic</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Constructs an NxN Hankel matrix</span>
-
-<span class="sd">        C(t) c(t+1) ... c(t+n-1)</span>
-<span class="sd">        C(t+1) c(t+2) ... c(t+n)</span>
-<span class="sd">        .................</span>
-<span class="sd">        C(t+(n-1)) c(t+n) ... c(t+2(n-1))</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        N : int</span>
-<span class="sd">            Dimension of the Hankel matrix</span>
-<span class="sd">        periodic : bool, optional</span>
-<span class="sd">            determines whether the matrix is extended periodically</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multi-operator Prony not implemented!&quot;</span><span class="p">)</span>
-
-        <span class="n">array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
-
-        <span class="k">def</span> <span class="nf">wrap</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-            <span class="k">while</span> <span class="n">i</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                <span class="n">i</span> <span class="o">-=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
-            <span class="k">return</span> <span class="n">i</span>
-
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">periodic</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">wrap</span><span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)][</span><span class="mi">0</span><span class="p">]</span>
-                    <span class="k">elif</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.Hankel-325"><a href="#Corr.Hankel-325"><span class="linenos">325</span></a>    <span class="k">def</span> <span class="nf">Hankel</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">,</span> <span class="n">periodic</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr.Hankel-326"><a href="#Corr.Hankel-326"><span class="linenos">326</span></a>        <span class="sd">&quot;&quot;&quot;Constructs an NxN Hankel matrix</span>
+</span><span id="Corr.Hankel-327"><a href="#Corr.Hankel-327"><span class="linenos">327</span></a>
+</span><span id="Corr.Hankel-328"><a href="#Corr.Hankel-328"><span class="linenos">328</span></a><span class="sd">        C(t) c(t+1) ... c(t+n-1)</span>
+</span><span id="Corr.Hankel-329"><a href="#Corr.Hankel-329"><span class="linenos">329</span></a><span class="sd">        C(t+1) c(t+2) ... c(t+n)</span>
+</span><span id="Corr.Hankel-330"><a href="#Corr.Hankel-330"><span class="linenos">330</span></a><span class="sd">        .................</span>
+</span><span id="Corr.Hankel-331"><a href="#Corr.Hankel-331"><span class="linenos">331</span></a><span class="sd">        C(t+(n-1)) c(t+n) ... c(t+2(n-1))</span>
+</span><span id="Corr.Hankel-332"><a href="#Corr.Hankel-332"><span class="linenos">332</span></a>
+</span><span id="Corr.Hankel-333"><a href="#Corr.Hankel-333"><span class="linenos">333</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.Hankel-334"><a href="#Corr.Hankel-334"><span class="linenos">334</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.Hankel-335"><a href="#Corr.Hankel-335"><span class="linenos">335</span></a><span class="sd">        N : int</span>
+</span><span id="Corr.Hankel-336"><a href="#Corr.Hankel-336"><span class="linenos">336</span></a><span class="sd">            Dimension of the Hankel matrix</span>
+</span><span id="Corr.Hankel-337"><a href="#Corr.Hankel-337"><span class="linenos">337</span></a><span class="sd">        periodic : bool, optional</span>
+</span><span id="Corr.Hankel-338"><a href="#Corr.Hankel-338"><span class="linenos">338</span></a><span class="sd">            determines whether the matrix is extended periodically</span>
+</span><span id="Corr.Hankel-339"><a href="#Corr.Hankel-339"><span class="linenos">339</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.Hankel-340"><a href="#Corr.Hankel-340"><span class="linenos">340</span></a>
+</span><span id="Corr.Hankel-341"><a href="#Corr.Hankel-341"><span class="linenos">341</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.Hankel-342"><a href="#Corr.Hankel-342"><span class="linenos">342</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Multi-operator Prony not implemented!&quot;</span><span class="p">)</span>
+</span><span id="Corr.Hankel-343"><a href="#Corr.Hankel-343"><span class="linenos">343</span></a>
+</span><span id="Corr.Hankel-344"><a href="#Corr.Hankel-344"><span class="linenos">344</span></a>        <span class="n">array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">([</span><span class="n">N</span><span class="p">,</span> <span class="n">N</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="s2">&quot;object&quot;</span><span class="p">)</span>
+</span><span id="Corr.Hankel-345"><a href="#Corr.Hankel-345"><span class="linenos">345</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.Hankel-346"><a href="#Corr.Hankel-346"><span class="linenos">346</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.Hankel-347"><a href="#Corr.Hankel-347"><span class="linenos">347</span></a>            <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">array</span><span class="o">.</span><span class="n">copy</span><span class="p">())</span>
+</span><span id="Corr.Hankel-348"><a href="#Corr.Hankel-348"><span class="linenos">348</span></a>
+</span><span id="Corr.Hankel-349"><a href="#Corr.Hankel-349"><span class="linenos">349</span></a>        <span class="k">def</span> <span class="nf">wrap</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="Corr.Hankel-350"><a href="#Corr.Hankel-350"><span class="linenos">350</span></a>            <span class="k">while</span> <span class="n">i</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr.Hankel-351"><a href="#Corr.Hankel-351"><span class="linenos">351</span></a>                <span class="n">i</span> <span class="o">-=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr.Hankel-352"><a href="#Corr.Hankel-352"><span class="linenos">352</span></a>            <span class="k">return</span> <span class="n">i</span>
+</span><span id="Corr.Hankel-353"><a href="#Corr.Hankel-353"><span class="linenos">353</span></a>
+</span><span id="Corr.Hankel-354"><a href="#Corr.Hankel-354"><span class="linenos">354</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.Hankel-355"><a href="#Corr.Hankel-355"><span class="linenos">355</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.Hankel-356"><a href="#Corr.Hankel-356"><span class="linenos">356</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Corr.Hankel-357"><a href="#Corr.Hankel-357"><span class="linenos">357</span></a>                    <span class="k">if</span> <span class="n">periodic</span><span class="p">:</span>
+</span><span id="Corr.Hankel-358"><a href="#Corr.Hankel-358"><span class="linenos">358</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">wrap</span><span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr.Hankel-359"><a href="#Corr.Hankel-359"><span class="linenos">359</span></a>                    <span class="k">elif</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">)</span> <span class="o">&gt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="Corr.Hankel-360"><a href="#Corr.Hankel-360"><span class="linenos">360</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Corr.Hankel-361"><a href="#Corr.Hankel-361"><span class="linenos">361</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.Hankel-362"><a href="#Corr.Hankel-362"><span class="linenos">362</span></a>                        <span class="n">new_content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="n">i</span> <span class="o">+</span> <span class="n">j</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr.Hankel-363"><a href="#Corr.Hankel-363"><span class="linenos">363</span></a>
+</span><span id="Corr.Hankel-364"><a href="#Corr.Hankel-364"><span class="linenos">364</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3085,16 +3085,16 @@ determines whether the matrix is extended periodically</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">roll</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dt</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Periodically shift the correlator by dt timeslices</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        dt : int</span>
-<span class="sd">            number of timeslices</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">roll</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">),</span> <span class="n">dt</span><span class="p">)))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.roll-366"><a href="#Corr.roll-366"><span class="linenos">366</span></a>    <span class="k">def</span> <span class="nf">roll</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">dt</span><span class="p">):</span>
+</span><span id="Corr.roll-367"><a href="#Corr.roll-367"><span class="linenos">367</span></a>        <span class="sd">&quot;&quot;&quot;Periodically shift the correlator by dt timeslices</span>
+</span><span id="Corr.roll-368"><a href="#Corr.roll-368"><span class="linenos">368</span></a>
+</span><span id="Corr.roll-369"><a href="#Corr.roll-369"><span class="linenos">369</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.roll-370"><a href="#Corr.roll-370"><span class="linenos">370</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.roll-371"><a href="#Corr.roll-371"><span class="linenos">371</span></a><span class="sd">        dt : int</span>
+</span><span id="Corr.roll-372"><a href="#Corr.roll-372"><span class="linenos">372</span></a><span class="sd">            number of timeslices</span>
+</span><span id="Corr.roll-373"><a href="#Corr.roll-373"><span class="linenos">373</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.roll-374"><a href="#Corr.roll-374"><span class="linenos">374</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">roll</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">),</span> <span class="n">dt</span><span class="p">)))</span>
+</span></pre></div>
 
         </details>
 
@@ -3120,10 +3120,10 @@ number of timeslices</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">reverse</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reverse the time ordering of the Corr&quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[::</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.reverse-376"><a href="#Corr.reverse-376"><span class="linenos">376</span></a>    <span class="k">def</span> <span class="nf">reverse</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.reverse-377"><a href="#Corr.reverse-377"><span class="linenos">377</span></a>        <span class="sd">&quot;&quot;&quot;Reverse the time ordering of the Corr&quot;&quot;&quot;</span>
+</span><span id="Corr.reverse-378"><a href="#Corr.reverse-378"><span class="linenos">378</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[::</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -3142,24 +3142,24 @@ number of timeslices</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">thin</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Thin out a correlator to suppress correlations</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        spacing : int</span>
-<span class="sd">            Keep only every &#39;spacing&#39;th entry of the correlator</span>
-<span class="sd">        offset : int</span>
-<span class="sd">            Offset the equal spacing</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-            <span class="k">if</span> <span class="p">(</span><span class="n">offset</span> <span class="o">+</span> <span class="n">t</span><span class="p">)</span> <span class="o">%</span> <span class="n">spacing</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.thin-380"><a href="#Corr.thin-380"><span class="linenos">380</span></a>    <span class="k">def</span> <span class="nf">thin</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">spacing</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">offset</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
+</span><span id="Corr.thin-381"><a href="#Corr.thin-381"><span class="linenos">381</span></a>        <span class="sd">&quot;&quot;&quot;Thin out a correlator to suppress correlations</span>
+</span><span id="Corr.thin-382"><a href="#Corr.thin-382"><span class="linenos">382</span></a>
+</span><span id="Corr.thin-383"><a href="#Corr.thin-383"><span class="linenos">383</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.thin-384"><a href="#Corr.thin-384"><span class="linenos">384</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.thin-385"><a href="#Corr.thin-385"><span class="linenos">385</span></a><span class="sd">        spacing : int</span>
+</span><span id="Corr.thin-386"><a href="#Corr.thin-386"><span class="linenos">386</span></a><span class="sd">            Keep only every &#39;spacing&#39;th entry of the correlator</span>
+</span><span id="Corr.thin-387"><a href="#Corr.thin-387"><span class="linenos">387</span></a><span class="sd">        offset : int</span>
+</span><span id="Corr.thin-388"><a href="#Corr.thin-388"><span class="linenos">388</span></a><span class="sd">            Offset the equal spacing</span>
+</span><span id="Corr.thin-389"><a href="#Corr.thin-389"><span class="linenos">389</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.thin-390"><a href="#Corr.thin-390"><span class="linenos">390</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.thin-391"><a href="#Corr.thin-391"><span class="linenos">391</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.thin-392"><a href="#Corr.thin-392"><span class="linenos">392</span></a>            <span class="k">if</span> <span class="p">(</span><span class="n">offset</span> <span class="o">+</span> <span class="n">t</span><span class="p">)</span> <span class="o">%</span> <span class="n">spacing</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Corr.thin-393"><a href="#Corr.thin-393"><span class="linenos">393</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.thin-394"><a href="#Corr.thin-394"><span class="linenos">394</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.thin-395"><a href="#Corr.thin-395"><span class="linenos">395</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr.thin-396"><a href="#Corr.thin-396"><span class="linenos">396</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3187,33 +3187,33 @@ Offset the equal spacing</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Correlate the correlator with another correlator or Obs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        partner : Obs or Corr</span>
-<span class="sd">            partner to correlate the correlator with.</span>
-<span class="sd">            Can either be an Obs which is correlated with all entries of the</span>
-<span class="sd">            correlator or a Corr of same length.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
-                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>  <span class="c1"># Should this include CObs?</span>
-                    <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only correlate with an Obs or a Corr.&quot;</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.correlate-398"><a href="#Corr.correlate-398"><span class="linenos">398</span></a>    <span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">):</span>
+</span><span id="Corr.correlate-399"><a href="#Corr.correlate-399"><span class="linenos">399</span></a>        <span class="sd">&quot;&quot;&quot;Correlate the correlator with another correlator or Obs</span>
+</span><span id="Corr.correlate-400"><a href="#Corr.correlate-400"><span class="linenos">400</span></a>
+</span><span id="Corr.correlate-401"><a href="#Corr.correlate-401"><span class="linenos">401</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.correlate-402"><a href="#Corr.correlate-402"><span class="linenos">402</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.correlate-403"><a href="#Corr.correlate-403"><span class="linenos">403</span></a><span class="sd">        partner : Obs or Corr</span>
+</span><span id="Corr.correlate-404"><a href="#Corr.correlate-404"><span class="linenos">404</span></a><span class="sd">            partner to correlate the correlator with.</span>
+</span><span id="Corr.correlate-405"><a href="#Corr.correlate-405"><span class="linenos">405</span></a><span class="sd">            Can either be an Obs which is correlated with all entries of the</span>
+</span><span id="Corr.correlate-406"><a href="#Corr.correlate-406"><span class="linenos">406</span></a><span class="sd">            correlator or a Corr of same length.</span>
+</span><span id="Corr.correlate-407"><a href="#Corr.correlate-407"><span class="linenos">407</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.correlate-408"><a href="#Corr.correlate-408"><span class="linenos">408</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.correlate-409"><a href="#Corr.correlate-409"><span class="linenos">409</span></a>        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
+</span><span id="Corr.correlate-410"><a href="#Corr.correlate-410"><span class="linenos">410</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.correlate-411"><a href="#Corr.correlate-411"><span class="linenos">411</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.correlate-412"><a href="#Corr.correlate-412"><span class="linenos">412</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.correlate-413"><a href="#Corr.correlate-413"><span class="linenos">413</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="Corr.correlate-414"><a href="#Corr.correlate-414"><span class="linenos">414</span></a>                    <span class="k">if</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.correlate-415"><a href="#Corr.correlate-415"><span class="linenos">415</span></a>                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.correlate-416"><a href="#Corr.correlate-416"><span class="linenos">416</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.correlate-417"><a href="#Corr.correlate-417"><span class="linenos">417</span></a>                        <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x0</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
+</span><span id="Corr.correlate-418"><a href="#Corr.correlate-418"><span class="linenos">418</span></a>                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>  <span class="c1"># Should this include CObs?</span>
+</span><span id="Corr.correlate-419"><a href="#Corr.correlate-419"><span class="linenos">419</span></a>                    <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">correlate</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">partner</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t_slice</span><span class="p">]))</span>
+</span><span id="Corr.correlate-420"><a href="#Corr.correlate-420"><span class="linenos">420</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.correlate-421"><a href="#Corr.correlate-421"><span class="linenos">421</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Can only correlate with an Obs or a Corr.&quot;</span><span class="p">)</span>
+</span><span id="Corr.correlate-422"><a href="#Corr.correlate-422"><span class="linenos">422</span></a>
+</span><span id="Corr.correlate-423"><a href="#Corr.correlate-423"><span class="linenos">423</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3241,27 +3241,27 @@ correlator or a Corr of same length.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">weight</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Reweight the correlator.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        weight : Obs</span>
-<span class="sd">            Reweighting factor. An Observable that has to be defined on a superset of the</span>
-<span class="sd">            configurations in obs[i].idl for all i.</span>
-<span class="sd">        all_configs : bool</span>
-<span class="sd">            if True, the reweighted observables are normalized by the average of</span>
-<span class="sd">            the reweighting factor on all configurations in weight.idl and not</span>
-<span class="sd">            on the configurations in obs[i].idl.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">t_slice</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.reweight-425"><a href="#Corr.reweight-425"><span class="linenos">425</span></a>    <span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">weight</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr.reweight-426"><a href="#Corr.reweight-426"><span class="linenos">426</span></a>        <span class="sd">&quot;&quot;&quot;Reweight the correlator.</span>
+</span><span id="Corr.reweight-427"><a href="#Corr.reweight-427"><span class="linenos">427</span></a>
+</span><span id="Corr.reweight-428"><a href="#Corr.reweight-428"><span class="linenos">428</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.reweight-429"><a href="#Corr.reweight-429"><span class="linenos">429</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.reweight-430"><a href="#Corr.reweight-430"><span class="linenos">430</span></a><span class="sd">        weight : Obs</span>
+</span><span id="Corr.reweight-431"><a href="#Corr.reweight-431"><span class="linenos">431</span></a><span class="sd">            Reweighting factor. An Observable that has to be defined on a superset of the</span>
+</span><span id="Corr.reweight-432"><a href="#Corr.reweight-432"><span class="linenos">432</span></a><span class="sd">            configurations in obs[i].idl for all i.</span>
+</span><span id="Corr.reweight-433"><a href="#Corr.reweight-433"><span class="linenos">433</span></a><span class="sd">        all_configs : bool</span>
+</span><span id="Corr.reweight-434"><a href="#Corr.reweight-434"><span class="linenos">434</span></a><span class="sd">            if True, the reweighted observables are normalized by the average of</span>
+</span><span id="Corr.reweight-435"><a href="#Corr.reweight-435"><span class="linenos">435</span></a><span class="sd">            the reweighting factor on all configurations in weight.idl and not</span>
+</span><span id="Corr.reweight-436"><a href="#Corr.reweight-436"><span class="linenos">436</span></a><span class="sd">            on the configurations in obs[i].idl.</span>
+</span><span id="Corr.reweight-437"><a href="#Corr.reweight-437"><span class="linenos">437</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.reweight-438"><a href="#Corr.reweight-438"><span class="linenos">438</span></a>        <span class="n">new_content</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.reweight-439"><a href="#Corr.reweight-439"><span class="linenos">439</span></a>        <span class="k">for</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">:</span>
+</span><span id="Corr.reweight-440"><a href="#Corr.reweight-440"><span class="linenos">440</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.reweight-441"><a href="#Corr.reweight-441"><span class="linenos">441</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.reweight-442"><a href="#Corr.reweight-442"><span class="linenos">442</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.reweight-443"><a href="#Corr.reweight-443"><span class="linenos">443</span></a>                <span class="n">new_content</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">t_slice</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
+</span><span id="Corr.reweight-444"><a href="#Corr.reweight-444"><span class="linenos">444</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">new_content</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3292,34 +3292,34 @@ on the configurations in obs[i].idl.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">T_symmetry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">,</span> <span class="n">parity</span><span class="o">=+</span><span class="mi">1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the time symmetry average of the correlator and its partner</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        partner : Corr</span>
-<span class="sd">            Time symmetry partner of the Corr</span>
-<span class="sd">        partity : int</span>
-<span class="sd">            Parity quantum number of the correlator, can be +1 or -1</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;T partner has to be a Corr object.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">parity</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="o">+</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Parity has to be +1 or -1.&quot;</span><span class="p">)</span>
-        <span class="n">T_partner</span> <span class="o">=</span> <span class="n">parity</span> <span class="o">*</span> <span class="n">partner</span><span class="o">.</span><span class="n">reverse</span><span class="p">()</span>
-
-        <span class="n">t_slices</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">test</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">T_partner</span><span class="p">)</span>
-        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">t_slice</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">5</span><span class="p">):</span>
-                    <span class="n">t_slices</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">t_slices</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;T symmetry partners do not agree within 5 sigma on time slices &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">t_slices</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">+</span> <span class="n">T_partner</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.T_symmetry-446"><a href="#Corr.T_symmetry-446"><span class="linenos">446</span></a>    <span class="k">def</span> <span class="nf">T_symmetry</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">partner</span><span class="p">,</span> <span class="n">parity</span><span class="o">=+</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr.T_symmetry-447"><a href="#Corr.T_symmetry-447"><span class="linenos">447</span></a>        <span class="sd">&quot;&quot;&quot;Return the time symmetry average of the correlator and its partner</span>
+</span><span id="Corr.T_symmetry-448"><a href="#Corr.T_symmetry-448"><span class="linenos">448</span></a>
+</span><span id="Corr.T_symmetry-449"><a href="#Corr.T_symmetry-449"><span class="linenos">449</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.T_symmetry-450"><a href="#Corr.T_symmetry-450"><span class="linenos">450</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.T_symmetry-451"><a href="#Corr.T_symmetry-451"><span class="linenos">451</span></a><span class="sd">        partner : Corr</span>
+</span><span id="Corr.T_symmetry-452"><a href="#Corr.T_symmetry-452"><span class="linenos">452</span></a><span class="sd">            Time symmetry partner of the Corr</span>
+</span><span id="Corr.T_symmetry-453"><a href="#Corr.T_symmetry-453"><span class="linenos">453</span></a><span class="sd">        partity : int</span>
+</span><span id="Corr.T_symmetry-454"><a href="#Corr.T_symmetry-454"><span class="linenos">454</span></a><span class="sd">            Parity quantum number of the correlator, can be +1 or -1</span>
+</span><span id="Corr.T_symmetry-455"><a href="#Corr.T_symmetry-455"><span class="linenos">455</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.T_symmetry-456"><a href="#Corr.T_symmetry-456"><span class="linenos">456</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">partner</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="Corr.T_symmetry-457"><a href="#Corr.T_symmetry-457"><span class="linenos">457</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;T partner has to be a Corr object.&quot;</span><span class="p">)</span>
+</span><span id="Corr.T_symmetry-458"><a href="#Corr.T_symmetry-458"><span class="linenos">458</span></a>        <span class="k">if</span> <span class="n">parity</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="o">+</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr.T_symmetry-459"><a href="#Corr.T_symmetry-459"><span class="linenos">459</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Parity has to be +1 or -1.&quot;</span><span class="p">)</span>
+</span><span id="Corr.T_symmetry-460"><a href="#Corr.T_symmetry-460"><span class="linenos">460</span></a>        <span class="n">T_partner</span> <span class="o">=</span> <span class="n">parity</span> <span class="o">*</span> <span class="n">partner</span><span class="o">.</span><span class="n">reverse</span><span class="p">()</span>
+</span><span id="Corr.T_symmetry-461"><a href="#Corr.T_symmetry-461"><span class="linenos">461</span></a>
+</span><span id="Corr.T_symmetry-462"><a href="#Corr.T_symmetry-462"><span class="linenos">462</span></a>        <span class="n">t_slices</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.T_symmetry-463"><a href="#Corr.T_symmetry-463"><span class="linenos">463</span></a>        <span class="n">test</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">T_partner</span><span class="p">)</span>
+</span><span id="Corr.T_symmetry-464"><a href="#Corr.T_symmetry-464"><span class="linenos">464</span></a>        <span class="n">test</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr.T_symmetry-465"><a href="#Corr.T_symmetry-465"><span class="linenos">465</span></a>        <span class="k">for</span> <span class="n">x0</span><span class="p">,</span> <span class="n">t_slice</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">test</span><span class="o">.</span><span class="n">content</span><span class="p">):</span>
+</span><span id="Corr.T_symmetry-466"><a href="#Corr.T_symmetry-466"><span class="linenos">466</span></a>            <span class="k">if</span> <span class="n">t_slice</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.T_symmetry-467"><a href="#Corr.T_symmetry-467"><span class="linenos">467</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">t_slice</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_zero_within_error</span><span class="p">(</span><span class="mi">5</span><span class="p">):</span>
+</span><span id="Corr.T_symmetry-468"><a href="#Corr.T_symmetry-468"><span class="linenos">468</span></a>                    <span class="n">t_slices</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span>
+</span><span id="Corr.T_symmetry-469"><a href="#Corr.T_symmetry-469"><span class="linenos">469</span></a>        <span class="k">if</span> <span class="n">t_slices</span><span class="p">:</span>
+</span><span id="Corr.T_symmetry-470"><a href="#Corr.T_symmetry-470"><span class="linenos">470</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;T symmetry partners do not agree within 5 sigma on time slices &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">t_slices</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="Corr.T_symmetry-471"><a href="#Corr.T_symmetry-471"><span class="linenos">471</span></a>
+</span><span id="Corr.T_symmetry-472"><a href="#Corr.T_symmetry-472"><span class="linenos">472</span></a>        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">+</span> <span class="n">T_partner</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
+</span></pre></div>
 
         </details>
 
@@ -3347,58 +3347,58 @@ Parity quantum number of the correlator, can be +1 or -1</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the first derivative of the correlator with respect to x0.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            decides which definition of the finite differences derivative is used.</span>
-<span class="sd">            Available choice: symmetric, forward, backward, improved, default: symmetric</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;forward&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;backward&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.deriv-474"><a href="#Corr.deriv-474"><span class="linenos">474</span></a>    <span class="k">def</span> <span class="nf">deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
+</span><span id="Corr.deriv-475"><a href="#Corr.deriv-475"><span class="linenos">475</span></a>        <span class="sd">&quot;&quot;&quot;Return the first derivative of the correlator with respect to x0.</span>
+</span><span id="Corr.deriv-476"><a href="#Corr.deriv-476"><span class="linenos">476</span></a>
+</span><span id="Corr.deriv-477"><a href="#Corr.deriv-477"><span class="linenos">477</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.deriv-478"><a href="#Corr.deriv-478"><span class="linenos">478</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.deriv-479"><a href="#Corr.deriv-479"><span class="linenos">479</span></a><span class="sd">        variant : str</span>
+</span><span id="Corr.deriv-480"><a href="#Corr.deriv-480"><span class="linenos">480</span></a><span class="sd">            decides which definition of the finite differences derivative is used.</span>
+</span><span id="Corr.deriv-481"><a href="#Corr.deriv-481"><span class="linenos">481</span></a><span class="sd">            Available choice: symmetric, forward, backward, improved, default: symmetric</span>
+</span><span id="Corr.deriv-482"><a href="#Corr.deriv-482"><span class="linenos">482</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.deriv-483"><a href="#Corr.deriv-483"><span class="linenos">483</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
+</span><span id="Corr.deriv-484"><a href="#Corr.deriv-484"><span class="linenos">484</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.deriv-485"><a href="#Corr.deriv-485"><span class="linenos">485</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr.deriv-486"><a href="#Corr.deriv-486"><span class="linenos">486</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.deriv-487"><a href="#Corr.deriv-487"><span class="linenos">487</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.deriv-488"><a href="#Corr.deriv-488"><span class="linenos">488</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.deriv-489"><a href="#Corr.deriv-489"><span class="linenos">489</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr.deriv-490"><a href="#Corr.deriv-490"><span class="linenos">490</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.deriv-491"><a href="#Corr.deriv-491"><span class="linenos">491</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr.deriv-492"><a href="#Corr.deriv-492"><span class="linenos">492</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr.deriv-493"><a href="#Corr.deriv-493"><span class="linenos">493</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;forward&quot;</span><span class="p">:</span>
+</span><span id="Corr.deriv-494"><a href="#Corr.deriv-494"><span class="linenos">494</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.deriv-495"><a href="#Corr.deriv-495"><span class="linenos">495</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr.deriv-496"><a href="#Corr.deriv-496"><span class="linenos">496</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.deriv-497"><a href="#Corr.deriv-497"><span class="linenos">497</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.deriv-498"><a href="#Corr.deriv-498"><span class="linenos">498</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.deriv-499"><a href="#Corr.deriv-499"><span class="linenos">499</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">])</span>
+</span><span id="Corr.deriv-500"><a href="#Corr.deriv-500"><span class="linenos">500</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.deriv-501"><a href="#Corr.deriv-501"><span class="linenos">501</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr.deriv-502"><a href="#Corr.deriv-502"><span class="linenos">502</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr.deriv-503"><a href="#Corr.deriv-503"><span class="linenos">503</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;backward&quot;</span><span class="p">:</span>
+</span><span id="Corr.deriv-504"><a href="#Corr.deriv-504"><span class="linenos">504</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.deriv-505"><a href="#Corr.deriv-505"><span class="linenos">505</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">):</span>
+</span><span id="Corr.deriv-506"><a href="#Corr.deriv-506"><span class="linenos">506</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.deriv-507"><a href="#Corr.deriv-507"><span class="linenos">507</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.deriv-508"><a href="#Corr.deriv-508"><span class="linenos">508</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.deriv-509"><a href="#Corr.deriv-509"><span class="linenos">509</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr.deriv-510"><a href="#Corr.deriv-510"><span class="linenos">510</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.deriv-511"><a href="#Corr.deriv-511"><span class="linenos">511</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr.deriv-512"><a href="#Corr.deriv-512"><span class="linenos">512</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">])</span>
+</span><span id="Corr.deriv-513"><a href="#Corr.deriv-513"><span class="linenos">513</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
+</span><span id="Corr.deriv-514"><a href="#Corr.deriv-514"><span class="linenos">514</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.deriv-515"><a href="#Corr.deriv-515"><span class="linenos">515</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="Corr.deriv-516"><a href="#Corr.deriv-516"><span class="linenos">516</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.deriv-517"><a href="#Corr.deriv-517"><span class="linenos">517</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.deriv-518"><a href="#Corr.deriv-518"><span class="linenos">518</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.deriv-519"><a href="#Corr.deriv-519"><span class="linenos">519</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">8</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]))</span>
+</span><span id="Corr.deriv-520"><a href="#Corr.deriv-520"><span class="linenos">520</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.deriv-521"><a href="#Corr.deriv-521"><span class="linenos">521</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Derivative is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr.deriv-522"><a href="#Corr.deriv-522"><span class="linenos">522</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Corr.deriv-523"><a href="#Corr.deriv-523"><span class="linenos">523</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.deriv-524"><a href="#Corr.deriv-524"><span class="linenos">524</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3425,38 +3425,38 @@ Available choice: symmetric, forward, backward, improved, default: symmetric</li
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">second_deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Return the second derivative of the correlator with respect to x0.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            decides which definition of the finite differences derivative is used.</span>
-<span class="sd">            Available choice: symmetric, improved, default: symmetric</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">30</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.second_deriv-526"><a href="#Corr.second_deriv-526"><span class="linenos">526</span></a>    <span class="k">def</span> <span class="nf">second_deriv</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s2">&quot;symmetric&quot;</span><span class="p">):</span>
+</span><span id="Corr.second_deriv-527"><a href="#Corr.second_deriv-527"><span class="linenos">527</span></a>        <span class="sd">&quot;&quot;&quot;Return the second derivative of the correlator with respect to x0.</span>
+</span><span id="Corr.second_deriv-528"><a href="#Corr.second_deriv-528"><span class="linenos">528</span></a>
+</span><span id="Corr.second_deriv-529"><a href="#Corr.second_deriv-529"><span class="linenos">529</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.second_deriv-530"><a href="#Corr.second_deriv-530"><span class="linenos">530</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.second_deriv-531"><a href="#Corr.second_deriv-531"><span class="linenos">531</span></a><span class="sd">        variant : str</span>
+</span><span id="Corr.second_deriv-532"><a href="#Corr.second_deriv-532"><span class="linenos">532</span></a><span class="sd">            decides which definition of the finite differences derivative is used.</span>
+</span><span id="Corr.second_deriv-533"><a href="#Corr.second_deriv-533"><span class="linenos">533</span></a><span class="sd">            Available choice: symmetric, improved, default: symmetric</span>
+</span><span id="Corr.second_deriv-534"><a href="#Corr.second_deriv-534"><span class="linenos">534</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.second_deriv-535"><a href="#Corr.second_deriv-535"><span class="linenos">535</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;symmetric&quot;</span><span class="p">:</span>
+</span><span id="Corr.second_deriv-536"><a href="#Corr.second_deriv-536"><span class="linenos">536</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.second_deriv-537"><a href="#Corr.second_deriv-537"><span class="linenos">537</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr.second_deriv-538"><a href="#Corr.second_deriv-538"><span class="linenos">538</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.second_deriv-539"><a href="#Corr.second_deriv-539"><span class="linenos">539</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.second_deriv-540"><a href="#Corr.second_deriv-540"><span class="linenos">540</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.second_deriv-541"><a href="#Corr.second_deriv-541"><span class="linenos">541</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr.second_deriv-542"><a href="#Corr.second_deriv-542"><span class="linenos">542</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.second_deriv-543"><a href="#Corr.second_deriv-543"><span class="linenos">543</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr.second_deriv-544"><a href="#Corr.second_deriv-544"><span class="linenos">544</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr.second_deriv-545"><a href="#Corr.second_deriv-545"><span class="linenos">545</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s2">&quot;improved&quot;</span><span class="p">:</span>
+</span><span id="Corr.second_deriv-546"><a href="#Corr.second_deriv-546"><span class="linenos">546</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.second_deriv-547"><a href="#Corr.second_deriv-547"><span class="linenos">547</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="Corr.second_deriv-548"><a href="#Corr.second_deriv-548"><span class="linenos">548</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.second_deriv-549"><a href="#Corr.second_deriv-549"><span class="linenos">549</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.second_deriv-550"><a href="#Corr.second_deriv-550"><span class="linenos">550</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.second_deriv-551"><a href="#Corr.second_deriv-551"><span class="linenos">551</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">12</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mi">30</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">+</span> <span class="mi">16</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]))</span>
+</span><span id="Corr.second_deriv-552"><a href="#Corr.second_deriv-552"><span class="linenos">552</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.second_deriv-553"><a href="#Corr.second_deriv-553"><span class="linenos">553</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Derivative is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr.second_deriv-554"><a href="#Corr.second_deriv-554"><span class="linenos">554</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Corr.second_deriv-555"><a href="#Corr.second_deriv-555"><span class="linenos">555</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.second_deriv-556"><a href="#Corr.second_deriv-556"><span class="linenos">556</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown variant.&quot;</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3483,71 +3483,71 @@ Available choice: symmetric, improved, default: symmetric</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">m_eff</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s1">&#39;log&#39;</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Returns the effective mass of the correlator as correlator object</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        variant : str</span>
-<span class="sd">            log : uses the standard effective mass log(C(t) / C(t+1))</span>
-<span class="sd">            cosh, periodic : Use periodicitiy of the correlator by solving C(t) / C(t+1) = cosh(m * (t - T/2)) / cosh(m * (t + 1 - T/2)) for m.</span>
-<span class="sd">            sinh : Use anti-periodicitiy of the correlator by solving C(t) / C(t+1) = sinh(m * (t - T/2)) / sinh(m * (t + 1 - T/2)) for m.</span>
-<span class="sd">            See, e.g., arXiv:1205.5380</span>
-<span class="sd">            arccosh : Uses the explicit form of the symmetrized correlator (not recommended)</span>
-<span class="sd">        guess : float</span>
-<span class="sd">            guess for the root finder, only relevant for the root variant</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator must be projected before getting m_eff&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;log&#39;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
-
-            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
-
-        <span class="k">elif</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">,</span> <span class="s1">&#39;sinh&#39;</span><span class="p">]:</span>
-            <span class="k">if</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">]:</span>
-                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">cosh</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sinh</span>
-
-            <span class="k">def</span> <span class="nf">root_function</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">/</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">-</span> <span class="n">d</span>
-
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="c1"># Fill the two timeslices in the middle of the lattice with their predecessors</span>
-                <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;sinh&#39;</span> <span class="ow">and</span> <span class="n">t</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">find_root</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">root_function</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="n">guess</span><span class="p">)))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
-
-            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-
-        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;arccosh&#39;</span><span class="p">:</span>
-            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]))</span>
-            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;m_eff is undefined at all timeslices&quot;</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown variant.&#39;</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.m_eff-558"><a href="#Corr.m_eff-558"><span class="linenos">558</span></a>    <span class="k">def</span> <span class="nf">m_eff</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">variant</span><span class="o">=</span><span class="s1">&#39;log&#39;</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">):</span>
+</span><span id="Corr.m_eff-559"><a href="#Corr.m_eff-559"><span class="linenos">559</span></a>        <span class="sd">&quot;&quot;&quot;Returns the effective mass of the correlator as correlator object</span>
+</span><span id="Corr.m_eff-560"><a href="#Corr.m_eff-560"><span class="linenos">560</span></a>
+</span><span id="Corr.m_eff-561"><a href="#Corr.m_eff-561"><span class="linenos">561</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.m_eff-562"><a href="#Corr.m_eff-562"><span class="linenos">562</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.m_eff-563"><a href="#Corr.m_eff-563"><span class="linenos">563</span></a><span class="sd">        variant : str</span>
+</span><span id="Corr.m_eff-564"><a href="#Corr.m_eff-564"><span class="linenos">564</span></a><span class="sd">            log : uses the standard effective mass log(C(t) / C(t+1))</span>
+</span><span id="Corr.m_eff-565"><a href="#Corr.m_eff-565"><span class="linenos">565</span></a><span class="sd">            cosh, periodic : Use periodicitiy of the correlator by solving C(t) / C(t+1) = cosh(m * (t - T/2)) / cosh(m * (t + 1 - T/2)) for m.</span>
+</span><span id="Corr.m_eff-566"><a href="#Corr.m_eff-566"><span class="linenos">566</span></a><span class="sd">            sinh : Use anti-periodicitiy of the correlator by solving C(t) / C(t+1) = sinh(m * (t - T/2)) / sinh(m * (t + 1 - T/2)) for m.</span>
+</span><span id="Corr.m_eff-567"><a href="#Corr.m_eff-567"><span class="linenos">567</span></a><span class="sd">            See, e.g., arXiv:1205.5380</span>
+</span><span id="Corr.m_eff-568"><a href="#Corr.m_eff-568"><span class="linenos">568</span></a><span class="sd">            arccosh : Uses the explicit form of the symmetrized correlator (not recommended)</span>
+</span><span id="Corr.m_eff-569"><a href="#Corr.m_eff-569"><span class="linenos">569</span></a><span class="sd">        guess : float</span>
+</span><span id="Corr.m_eff-570"><a href="#Corr.m_eff-570"><span class="linenos">570</span></a><span class="sd">            guess for the root finder, only relevant for the root variant</span>
+</span><span id="Corr.m_eff-571"><a href="#Corr.m_eff-571"><span class="linenos">571</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.m_eff-572"><a href="#Corr.m_eff-572"><span class="linenos">572</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.m_eff-573"><a href="#Corr.m_eff-573"><span class="linenos">573</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator must be projected before getting m_eff&#39;</span><span class="p">)</span>
+</span><span id="Corr.m_eff-574"><a href="#Corr.m_eff-574"><span class="linenos">574</span></a>        <span class="k">if</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;log&#39;</span><span class="p">:</span>
+</span><span id="Corr.m_eff-575"><a href="#Corr.m_eff-575"><span class="linenos">575</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.m_eff-576"><a href="#Corr.m_eff-576"><span class="linenos">576</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr.m_eff-577"><a href="#Corr.m_eff-577"><span class="linenos">577</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.m_eff-578"><a href="#Corr.m_eff-578"><span class="linenos">578</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.m_eff-579"><a href="#Corr.m_eff-579"><span class="linenos">579</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.m_eff-580"><a href="#Corr.m_eff-580"><span class="linenos">580</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr.m_eff-581"><a href="#Corr.m_eff-581"><span class="linenos">581</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.m_eff-582"><a href="#Corr.m_eff-582"><span class="linenos">582</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr.m_eff-583"><a href="#Corr.m_eff-583"><span class="linenos">583</span></a>
+</span><span id="Corr.m_eff-584"><a href="#Corr.m_eff-584"><span class="linenos">584</span></a>            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr.m_eff-585"><a href="#Corr.m_eff-585"><span class="linenos">585</span></a>
+</span><span id="Corr.m_eff-586"><a href="#Corr.m_eff-586"><span class="linenos">586</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">,</span> <span class="s1">&#39;sinh&#39;</span><span class="p">]:</span>
+</span><span id="Corr.m_eff-587"><a href="#Corr.m_eff-587"><span class="linenos">587</span></a>            <span class="k">if</span> <span class="n">variant</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;periodic&#39;</span><span class="p">,</span> <span class="s1">&#39;cosh&#39;</span><span class="p">]:</span>
+</span><span id="Corr.m_eff-588"><a href="#Corr.m_eff-588"><span class="linenos">588</span></a>                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">cosh</span>
+</span><span id="Corr.m_eff-589"><a href="#Corr.m_eff-589"><span class="linenos">589</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.m_eff-590"><a href="#Corr.m_eff-590"><span class="linenos">590</span></a>                <span class="n">func</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sinh</span>
+</span><span id="Corr.m_eff-591"><a href="#Corr.m_eff-591"><span class="linenos">591</span></a>
+</span><span id="Corr.m_eff-592"><a href="#Corr.m_eff-592"><span class="linenos">592</span></a>            <span class="k">def</span> <span class="nf">root_function</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
+</span><span id="Corr.m_eff-593"><a href="#Corr.m_eff-593"><span class="linenos">593</span></a>                <span class="k">return</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">/</span> <span class="n">func</span><span class="p">(</span><span class="n">x</span> <span class="o">*</span> <span class="p">(</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">))</span> <span class="o">-</span> <span class="n">d</span>
+</span><span id="Corr.m_eff-594"><a href="#Corr.m_eff-594"><span class="linenos">594</span></a>
+</span><span id="Corr.m_eff-595"><a href="#Corr.m_eff-595"><span class="linenos">595</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.m_eff-596"><a href="#Corr.m_eff-596"><span class="linenos">596</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr.m_eff-597"><a href="#Corr.m_eff-597"><span class="linenos">597</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.m_eff-598"><a href="#Corr.m_eff-598"><span class="linenos">598</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.m_eff-599"><a href="#Corr.m_eff-599"><span class="linenos">599</span></a>                <span class="c1"># Fill the two timeslices in the middle of the lattice with their predecessors</span>
+</span><span id="Corr.m_eff-600"><a href="#Corr.m_eff-600"><span class="linenos">600</span></a>                <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;sinh&#39;</span> <span class="ow">and</span> <span class="n">t</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]:</span>
+</span><span id="Corr.m_eff-601"><a href="#Corr.m_eff-601"><span class="linenos">601</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">newcontent</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr.m_eff-602"><a href="#Corr.m_eff-602"><span class="linenos">602</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.m_eff-603"><a href="#Corr.m_eff-603"><span class="linenos">603</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">find_root</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">root_function</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="n">guess</span><span class="p">)))</span>
+</span><span id="Corr.m_eff-604"><a href="#Corr.m_eff-604"><span class="linenos">604</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.m_eff-605"><a href="#Corr.m_eff-605"><span class="linenos">605</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;m_eff is undefined at all timeslices&#39;</span><span class="p">)</span>
+</span><span id="Corr.m_eff-606"><a href="#Corr.m_eff-606"><span class="linenos">606</span></a>
+</span><span id="Corr.m_eff-607"><a href="#Corr.m_eff-607"><span class="linenos">607</span></a>            <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Corr.m_eff-608"><a href="#Corr.m_eff-608"><span class="linenos">608</span></a>
+</span><span id="Corr.m_eff-609"><a href="#Corr.m_eff-609"><span class="linenos">609</span></a>        <span class="k">elif</span> <span class="n">variant</span> <span class="o">==</span> <span class="s1">&#39;arccosh&#39;</span><span class="p">:</span>
+</span><span id="Corr.m_eff-610"><a href="#Corr.m_eff-610"><span class="linenos">610</span></a>            <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Corr.m_eff-611"><a href="#Corr.m_eff-611"><span class="linenos">611</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="Corr.m_eff-612"><a href="#Corr.m_eff-612"><span class="linenos">612</span></a>                <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">or</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">):</span>
+</span><span id="Corr.m_eff-613"><a href="#Corr.m_eff-613"><span class="linenos">613</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="Corr.m_eff-614"><a href="#Corr.m_eff-614"><span class="linenos">614</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.m_eff-615"><a href="#Corr.m_eff-615"><span class="linenos">615</span></a>                    <span class="n">newcontent</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span> <span class="o">-</span> <span class="mi">1</span><span class="p">])</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]))</span>
+</span><span id="Corr.m_eff-616"><a href="#Corr.m_eff-616"><span class="linenos">616</span></a>            <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="n">x</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">newcontent</span><span class="p">])):</span>
+</span><span id="Corr.m_eff-617"><a href="#Corr.m_eff-617"><span class="linenos">617</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;m_eff is undefined at all timeslices&quot;</span><span class="p">)</span>
+</span><span id="Corr.m_eff-618"><a href="#Corr.m_eff-618"><span class="linenos">618</span></a>            <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">]))</span>
+</span><span id="Corr.m_eff-619"><a href="#Corr.m_eff-619"><span class="linenos">619</span></a>
+</span><span id="Corr.m_eff-620"><a href="#Corr.m_eff-620"><span class="linenos">620</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.m_eff-621"><a href="#Corr.m_eff-621"><span class="linenos">621</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown variant.&#39;</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3579,40 +3579,40 @@ guess for the root finder, only relevant for the root variant</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">fitrange</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Fits function to the data</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        function : obj</span>
-<span class="sd">            function to fit to the data. See fits.least_squares for details.</span>
-<span class="sd">        fitrange : list</span>
-<span class="sd">            Two element list containing the timeslices on which the fit is supposed to start and stop.</span>
-<span class="sd">            Caution: This range is inclusive as opposed to standard python indexing.</span>
-<span class="sd">            `fitrange=[4, 6]` corresponds to the three entries 4, 5 and 6.</span>
-<span class="sd">            If not specified, self.prange or all timeslices are used.</span>
-<span class="sd">        silent : bool</span>
-<span class="sd">            Decides whether output is printed to the standard output.</span>
-<span class="sd">        &#39;&#39;&#39;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before fitting&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">fitrange</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-                <span class="n">fitrange</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">fitrange</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fitrange</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to be a list with two elements&quot;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">fitrange</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to have exactly two elements [fit_start, fit_stop]&quot;</span><span class="p">)</span>
-
-        <span class="n">xs</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">ys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">xs</span><span class="p">,</span> <span class="n">ys</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.fit-623"><a href="#Corr.fit-623"><span class="linenos">623</span></a>    <span class="k">def</span> <span class="nf">fit</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">fitrange</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr.fit-624"><a href="#Corr.fit-624"><span class="linenos">624</span></a>        <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Fits function to the data</span>
+</span><span id="Corr.fit-625"><a href="#Corr.fit-625"><span class="linenos">625</span></a>
+</span><span id="Corr.fit-626"><a href="#Corr.fit-626"><span class="linenos">626</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.fit-627"><a href="#Corr.fit-627"><span class="linenos">627</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.fit-628"><a href="#Corr.fit-628"><span class="linenos">628</span></a><span class="sd">        function : obj</span>
+</span><span id="Corr.fit-629"><a href="#Corr.fit-629"><span class="linenos">629</span></a><span class="sd">            function to fit to the data. See fits.least_squares for details.</span>
+</span><span id="Corr.fit-630"><a href="#Corr.fit-630"><span class="linenos">630</span></a><span class="sd">        fitrange : list</span>
+</span><span id="Corr.fit-631"><a href="#Corr.fit-631"><span class="linenos">631</span></a><span class="sd">            Two element list containing the timeslices on which the fit is supposed to start and stop.</span>
+</span><span id="Corr.fit-632"><a href="#Corr.fit-632"><span class="linenos">632</span></a><span class="sd">            Caution: This range is inclusive as opposed to standard python indexing.</span>
+</span><span id="Corr.fit-633"><a href="#Corr.fit-633"><span class="linenos">633</span></a><span class="sd">            `fitrange=[4, 6]` corresponds to the three entries 4, 5 and 6.</span>
+</span><span id="Corr.fit-634"><a href="#Corr.fit-634"><span class="linenos">634</span></a><span class="sd">            If not specified, self.prange or all timeslices are used.</span>
+</span><span id="Corr.fit-635"><a href="#Corr.fit-635"><span class="linenos">635</span></a><span class="sd">        silent : bool</span>
+</span><span id="Corr.fit-636"><a href="#Corr.fit-636"><span class="linenos">636</span></a><span class="sd">            Decides whether output is printed to the standard output.</span>
+</span><span id="Corr.fit-637"><a href="#Corr.fit-637"><span class="linenos">637</span></a><span class="sd">        &#39;&#39;&#39;</span>
+</span><span id="Corr.fit-638"><a href="#Corr.fit-638"><span class="linenos">638</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.fit-639"><a href="#Corr.fit-639"><span class="linenos">639</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before fitting&quot;</span><span class="p">)</span>
+</span><span id="Corr.fit-640"><a href="#Corr.fit-640"><span class="linenos">640</span></a>
+</span><span id="Corr.fit-641"><a href="#Corr.fit-641"><span class="linenos">641</span></a>        <span class="k">if</span> <span class="n">fitrange</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.fit-642"><a href="#Corr.fit-642"><span class="linenos">642</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="Corr.fit-643"><a href="#Corr.fit-643"><span class="linenos">643</span></a>                <span class="n">fitrange</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="Corr.fit-644"><a href="#Corr.fit-644"><span class="linenos">644</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.fit-645"><a href="#Corr.fit-645"><span class="linenos">645</span></a>                <span class="n">fitrange</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="Corr.fit-646"><a href="#Corr.fit-646"><span class="linenos">646</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.fit-647"><a href="#Corr.fit-647"><span class="linenos">647</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">fitrange</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="Corr.fit-648"><a href="#Corr.fit-648"><span class="linenos">648</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to be a list with two elements&quot;</span><span class="p">)</span>
+</span><span id="Corr.fit-649"><a href="#Corr.fit-649"><span class="linenos">649</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">fitrange</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Corr.fit-650"><a href="#Corr.fit-650"><span class="linenos">650</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;fitrange has to have exactly two elements [fit_start, fit_stop]&quot;</span><span class="p">)</span>
+</span><span id="Corr.fit-651"><a href="#Corr.fit-651"><span class="linenos">651</span></a>
+</span><span id="Corr.fit-652"><a href="#Corr.fit-652"><span class="linenos">652</span></a>        <span class="n">xs</span> <span class="o">=</span> <span class="p">[</span><span class="n">x</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr.fit-653"><a href="#Corr.fit-653"><span class="linenos">653</span></a>        <span class="n">ys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">fitrange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">fitrange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr.fit-654"><a href="#Corr.fit-654"><span class="linenos">654</span></a>        <span class="n">result</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">xs</span><span class="p">,</span> <span class="n">ys</span><span class="p">,</span> <span class="n">function</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="Corr.fit-655"><a href="#Corr.fit-655"><span class="linenos">655</span></a>        <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -3645,43 +3645,43 @@ Decides whether output is printed to the standard output.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">plateau</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">plateau_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fit&quot;</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Extract a plateau value from a Corr object</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        plateau_range : list</span>
-<span class="sd">            list with two entries, indicating the first and the last timeslice</span>
-<span class="sd">            of the plateau region.</span>
-<span class="sd">        method : str</span>
-<span class="sd">            method to extract the plateau.</span>
-<span class="sd">                &#39;fit&#39; fits a constant to the plateau region</span>
-<span class="sd">                &#39;avg&#39;, &#39;average&#39; or &#39;mean&#39; just average over the given timeslices.</span>
-<span class="sd">        auto_gamma : bool</span>
-<span class="sd">            apply gamma_method with default parameters to the Corr. Defaults to None</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">plateau_range</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-                <span class="n">plateau_range</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;no plateau range provided&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before getting a plateau.&quot;</span><span class="p">)</span>
-        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)])):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;plateau is undefined at all timeslices in plateaurange.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;fit&quot;</span><span class="p">:</span>
-            <span class="k">def</span> <span class="nf">const_func</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">t</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">const_func</span><span class="p">,</span> <span class="n">plateau_range</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">elif</span> <span class="n">method</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;avg&quot;</span><span class="p">,</span> <span class="s2">&quot;average&quot;</span><span class="p">,</span> <span class="s2">&quot;mean&quot;</span><span class="p">]:</span>
-            <span class="n">returnvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">([</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
-            <span class="k">return</span> <span class="n">returnvalue</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsupported plateau method: &quot;</span> <span class="o">+</span> <span class="n">method</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.plateau-657"><a href="#Corr.plateau-657"><span class="linenos">657</span></a>    <span class="k">def</span> <span class="nf">plateau</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">plateau_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s2">&quot;fit&quot;</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr.plateau-658"><a href="#Corr.plateau-658"><span class="linenos">658</span></a>        <span class="sd">&quot;&quot;&quot; Extract a plateau value from a Corr object</span>
+</span><span id="Corr.plateau-659"><a href="#Corr.plateau-659"><span class="linenos">659</span></a>
+</span><span id="Corr.plateau-660"><a href="#Corr.plateau-660"><span class="linenos">660</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.plateau-661"><a href="#Corr.plateau-661"><span class="linenos">661</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.plateau-662"><a href="#Corr.plateau-662"><span class="linenos">662</span></a><span class="sd">        plateau_range : list</span>
+</span><span id="Corr.plateau-663"><a href="#Corr.plateau-663"><span class="linenos">663</span></a><span class="sd">            list with two entries, indicating the first and the last timeslice</span>
+</span><span id="Corr.plateau-664"><a href="#Corr.plateau-664"><span class="linenos">664</span></a><span class="sd">            of the plateau region.</span>
+</span><span id="Corr.plateau-665"><a href="#Corr.plateau-665"><span class="linenos">665</span></a><span class="sd">        method : str</span>
+</span><span id="Corr.plateau-666"><a href="#Corr.plateau-666"><span class="linenos">666</span></a><span class="sd">            method to extract the plateau.</span>
+</span><span id="Corr.plateau-667"><a href="#Corr.plateau-667"><span class="linenos">667</span></a><span class="sd">                &#39;fit&#39; fits a constant to the plateau region</span>
+</span><span id="Corr.plateau-668"><a href="#Corr.plateau-668"><span class="linenos">668</span></a><span class="sd">                &#39;avg&#39;, &#39;average&#39; or &#39;mean&#39; just average over the given timeslices.</span>
+</span><span id="Corr.plateau-669"><a href="#Corr.plateau-669"><span class="linenos">669</span></a><span class="sd">        auto_gamma : bool</span>
+</span><span id="Corr.plateau-670"><a href="#Corr.plateau-670"><span class="linenos">670</span></a><span class="sd">            apply gamma_method with default parameters to the Corr. Defaults to None</span>
+</span><span id="Corr.plateau-671"><a href="#Corr.plateau-671"><span class="linenos">671</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.plateau-672"><a href="#Corr.plateau-672"><span class="linenos">672</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">plateau_range</span><span class="p">:</span>
+</span><span id="Corr.plateau-673"><a href="#Corr.plateau-673"><span class="linenos">673</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="Corr.plateau-674"><a href="#Corr.plateau-674"><span class="linenos">674</span></a>                <span class="n">plateau_range</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="Corr.plateau-675"><a href="#Corr.plateau-675"><span class="linenos">675</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.plateau-676"><a href="#Corr.plateau-676"><span class="linenos">676</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;no plateau range provided&quot;</span><span class="p">)</span>
+</span><span id="Corr.plateau-677"><a href="#Corr.plateau-677"><span class="linenos">677</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.plateau-678"><a href="#Corr.plateau-678"><span class="linenos">678</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before getting a plateau.&quot;</span><span class="p">)</span>
+</span><span id="Corr.plateau-679"><a href="#Corr.plateau-679"><span class="linenos">679</span></a>        <span class="k">if</span><span class="p">(</span><span class="nb">all</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">t</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)])):</span>
+</span><span id="Corr.plateau-680"><a href="#Corr.plateau-680"><span class="linenos">680</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;plateau is undefined at all timeslices in plateaurange.&quot;</span><span class="p">)</span>
+</span><span id="Corr.plateau-681"><a href="#Corr.plateau-681"><span class="linenos">681</span></a>        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr.plateau-682"><a href="#Corr.plateau-682"><span class="linenos">682</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr.plateau-683"><a href="#Corr.plateau-683"><span class="linenos">683</span></a>        <span class="k">if</span> <span class="n">method</span> <span class="o">==</span> <span class="s2">&quot;fit&quot;</span><span class="p">:</span>
+</span><span id="Corr.plateau-684"><a href="#Corr.plateau-684"><span class="linenos">684</span></a>            <span class="k">def</span> <span class="nf">const_func</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">t</span><span class="p">):</span>
+</span><span id="Corr.plateau-685"><a href="#Corr.plateau-685"><span class="linenos">685</span></a>                <span class="k">return</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr.plateau-686"><a href="#Corr.plateau-686"><span class="linenos">686</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">const_func</span><span class="p">,</span> <span class="n">plateau_range</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Corr.plateau-687"><a href="#Corr.plateau-687"><span class="linenos">687</span></a>        <span class="k">elif</span> <span class="n">method</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;avg&quot;</span><span class="p">,</span> <span class="s2">&quot;average&quot;</span><span class="p">,</span> <span class="s2">&quot;mean&quot;</span><span class="p">]:</span>
+</span><span id="Corr.plateau-688"><a href="#Corr.plateau-688"><span class="linenos">688</span></a>            <span class="n">returnvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">([</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span><span class="n">plateau_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="n">item</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span>
+</span><span id="Corr.plateau-689"><a href="#Corr.plateau-689"><span class="linenos">689</span></a>            <span class="k">return</span> <span class="n">returnvalue</span>
+</span><span id="Corr.plateau-690"><a href="#Corr.plateau-690"><span class="linenos">690</span></a>
+</span><span id="Corr.plateau-691"><a href="#Corr.plateau-691"><span class="linenos">691</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.plateau-692"><a href="#Corr.plateau-692"><span class="linenos">692</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsupported plateau method: &quot;</span> <span class="o">+</span> <span class="n">method</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3714,18 +3714,18 @@ apply gamma_method with default parameters to the Corr. Defaults to None</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">set_prange</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prange</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Sets the attribute prange of the Corr object.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">prange</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;prange must be a list or array with two values&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">((</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">))</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="nb">int</span><span class="p">))):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must be integers&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must define a range in the interval 0,T&quot;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
-        <span class="k">return</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.set_prange-694"><a href="#Corr.set_prange-694"><span class="linenos">694</span></a>    <span class="k">def</span> <span class="nf">set_prange</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">prange</span><span class="p">):</span>
+</span><span id="Corr.set_prange-695"><a href="#Corr.set_prange-695"><span class="linenos">695</span></a>        <span class="sd">&quot;&quot;&quot;Sets the attribute prange of the Corr object.&quot;&quot;&quot;</span>
+</span><span id="Corr.set_prange-696"><a href="#Corr.set_prange-696"><span class="linenos">696</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">prange</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Corr.set_prange-697"><a href="#Corr.set_prange-697"><span class="linenos">697</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;prange must be a list or array with two values&quot;</span><span class="p">)</span>
+</span><span id="Corr.set_prange-698"><a href="#Corr.set_prange-698"><span class="linenos">698</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">((</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">))</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="nb">int</span><span class="p">))):</span>
+</span><span id="Corr.set_prange-699"><a href="#Corr.set_prange-699"><span class="linenos">699</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must be integers&quot;</span><span class="p">)</span>
+</span><span id="Corr.set_prange-700"><a href="#Corr.set_prange-700"><span class="linenos">700</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="mi">0</span> <span class="o">&lt;=</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="ow">and</span> <span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="Corr.set_prange-701"><a href="#Corr.set_prange-701"><span class="linenos">701</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Start and end point must define a range in the interval 0,T&quot;</span><span class="p">)</span>
+</span><span id="Corr.set_prange-702"><a href="#Corr.set_prange-702"><span class="linenos">702</span></a>
+</span><span id="Corr.set_prange-703"><a href="#Corr.set_prange-703"><span class="linenos">703</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">prange</span>
+</span><span id="Corr.set_prange-704"><a href="#Corr.set_prange-704"><span class="linenos">704</span></a>        <span class="k">return</span>
+</span></pre></div>
 
         </details>
 
@@ -3755,99 +3755,99 @@ apply gamma_method with default parameters to the Corr. Defaults to None</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">y_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">plateau</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fit_res</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ylabel</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plots the correlator using the tag of the correlator as label if available.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        x_range : list</span>
-<span class="sd">            list of two values, determining the range of the x-axis e.g. [4, 8]</span>
-<span class="sd">        comp : Corr or list of Corr</span>
-<span class="sd">            Correlator or list of correlators which are plotted for comparison.</span>
-<span class="sd">            The tags of these correlators are used as labels if available.</span>
-<span class="sd">        logscale : bool</span>
-<span class="sd">            Sets y-axis to logscale</span>
-<span class="sd">        plateau : Obs</span>
-<span class="sd">            Plateau value to be visualized in the figure</span>
-<span class="sd">        fit_res : Fit_result</span>
-<span class="sd">            Fit_result object to be visualized</span>
-<span class="sd">        ylabel : str</span>
-<span class="sd">            Label for the y-axis</span>
-<span class="sd">        save : str</span>
-<span class="sd">            path to file in which the figure should be saved</span>
-<span class="sd">        auto_gamma : bool</span>
-<span class="sd">            Apply the gamma method with standard parameters to all correlators and plateau values before plotting.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before plotting&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-
-        <span class="k">if</span> <span class="n">x_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">x_range</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-
-        <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-        <span class="n">ax1</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
-
-        <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">logscale</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">y_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">y_min</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-                    <span class="n">y_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-                    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">([</span><span class="n">y_min</span> <span class="o">-</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">),</span> <span class="n">y_max</span> <span class="o">+</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">)])</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">pass</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">y_range</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">comp</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="p">(</span><span class="n">Corr</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
-                <span class="k">for</span> <span class="n">corr</span> <span class="ow">in</span> <span class="n">comp</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="p">[</span><span class="n">comp</span><span class="p">]:</span>
-                    <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-                        <span class="n">corr</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-                    <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="n">corr</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
-                    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">corr</span><span class="o">.</span><span class="n">tag</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;comp&#39; must be a correlator or a list of correlators.&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">plateau</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">plateau</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
-                    <span class="n">plateau</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.6</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">plateau</span><span class="p">))</span>
-                <span class="n">ax1</span><span class="o">.</span><span class="n">axhspan</span><span class="p">(</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;plateau&#39; must be an Obs&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">fit_res</span><span class="p">:</span>
-            <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">)</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span>
-                     <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_function</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span>
-                     <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
-
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ylabel</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="n">ylabel</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">,</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">])</span>
-
-        <span class="n">handles</span><span class="p">,</span> <span class="n">labels</span> <span class="o">=</span> <span class="n">ax1</span><span class="o">.</span><span class="n">get_legend_handles_labels</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">labels</span><span class="p">:</span>
-            <span class="n">ax1</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-        <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">save</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;save&#39; has to be a string.&quot;</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.show-706"><a href="#Corr.show-706"><span class="linenos">706</span></a>    <span class="k">def</span> <span class="nf">show</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">comp</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">y_range</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">plateau</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">fit_res</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ylabel</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">auto_gamma</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="Corr.show-707"><a href="#Corr.show-707"><span class="linenos">707</span></a>        <span class="sd">&quot;&quot;&quot;Plots the correlator using the tag of the correlator as label if available.</span>
+</span><span id="Corr.show-708"><a href="#Corr.show-708"><span class="linenos">708</span></a>
+</span><span id="Corr.show-709"><a href="#Corr.show-709"><span class="linenos">709</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.show-710"><a href="#Corr.show-710"><span class="linenos">710</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.show-711"><a href="#Corr.show-711"><span class="linenos">711</span></a><span class="sd">        x_range : list</span>
+</span><span id="Corr.show-712"><a href="#Corr.show-712"><span class="linenos">712</span></a><span class="sd">            list of two values, determining the range of the x-axis e.g. [4, 8]</span>
+</span><span id="Corr.show-713"><a href="#Corr.show-713"><span class="linenos">713</span></a><span class="sd">        comp : Corr or list of Corr</span>
+</span><span id="Corr.show-714"><a href="#Corr.show-714"><span class="linenos">714</span></a><span class="sd">            Correlator or list of correlators which are plotted for comparison.</span>
+</span><span id="Corr.show-715"><a href="#Corr.show-715"><span class="linenos">715</span></a><span class="sd">            The tags of these correlators are used as labels if available.</span>
+</span><span id="Corr.show-716"><a href="#Corr.show-716"><span class="linenos">716</span></a><span class="sd">        logscale : bool</span>
+</span><span id="Corr.show-717"><a href="#Corr.show-717"><span class="linenos">717</span></a><span class="sd">            Sets y-axis to logscale</span>
+</span><span id="Corr.show-718"><a href="#Corr.show-718"><span class="linenos">718</span></a><span class="sd">        plateau : Obs</span>
+</span><span id="Corr.show-719"><a href="#Corr.show-719"><span class="linenos">719</span></a><span class="sd">            Plateau value to be visualized in the figure</span>
+</span><span id="Corr.show-720"><a href="#Corr.show-720"><span class="linenos">720</span></a><span class="sd">        fit_res : Fit_result</span>
+</span><span id="Corr.show-721"><a href="#Corr.show-721"><span class="linenos">721</span></a><span class="sd">            Fit_result object to be visualized</span>
+</span><span id="Corr.show-722"><a href="#Corr.show-722"><span class="linenos">722</span></a><span class="sd">        ylabel : str</span>
+</span><span id="Corr.show-723"><a href="#Corr.show-723"><span class="linenos">723</span></a><span class="sd">            Label for the y-axis</span>
+</span><span id="Corr.show-724"><a href="#Corr.show-724"><span class="linenos">724</span></a><span class="sd">        save : str</span>
+</span><span id="Corr.show-725"><a href="#Corr.show-725"><span class="linenos">725</span></a><span class="sd">            path to file in which the figure should be saved</span>
+</span><span id="Corr.show-726"><a href="#Corr.show-726"><span class="linenos">726</span></a><span class="sd">        auto_gamma : bool</span>
+</span><span id="Corr.show-727"><a href="#Corr.show-727"><span class="linenos">727</span></a><span class="sd">            Apply the gamma method with standard parameters to all correlators and plateau values before plotting.</span>
+</span><span id="Corr.show-728"><a href="#Corr.show-728"><span class="linenos">728</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.show-729"><a href="#Corr.show-729"><span class="linenos">729</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.show-730"><a href="#Corr.show-730"><span class="linenos">730</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator must be projected before plotting&quot;</span><span class="p">)</span>
+</span><span id="Corr.show-731"><a href="#Corr.show-731"><span class="linenos">731</span></a>
+</span><span id="Corr.show-732"><a href="#Corr.show-732"><span class="linenos">732</span></a>        <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr.show-733"><a href="#Corr.show-733"><span class="linenos">733</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr.show-734"><a href="#Corr.show-734"><span class="linenos">734</span></a>
+</span><span id="Corr.show-735"><a href="#Corr.show-735"><span class="linenos">735</span></a>        <span class="k">if</span> <span class="n">x_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.show-736"><a href="#Corr.show-736"><span class="linenos">736</span></a>            <span class="n">x_range</span> <span class="o">=</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="Corr.show-737"><a href="#Corr.show-737"><span class="linenos">737</span></a>
+</span><span id="Corr.show-738"><a href="#Corr.show-738"><span class="linenos">738</span></a>        <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Corr.show-739"><a href="#Corr.show-739"><span class="linenos">739</span></a>        <span class="n">ax1</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
+</span><span id="Corr.show-740"><a href="#Corr.show-740"><span class="linenos">740</span></a>
+</span><span id="Corr.show-741"><a href="#Corr.show-741"><span class="linenos">741</span></a>        <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
+</span><span id="Corr.show-742"><a href="#Corr.show-742"><span class="linenos">742</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="Corr.show-743"><a href="#Corr.show-743"><span class="linenos">743</span></a>        <span class="k">if</span> <span class="n">logscale</span><span class="p">:</span>
+</span><span id="Corr.show-744"><a href="#Corr.show-744"><span class="linenos">744</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
+</span><span id="Corr.show-745"><a href="#Corr.show-745"><span class="linenos">745</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.show-746"><a href="#Corr.show-746"><span class="linenos">746</span></a>            <span class="k">if</span> <span class="n">y_range</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Corr.show-747"><a href="#Corr.show-747"><span class="linenos">747</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="Corr.show-748"><a href="#Corr.show-748"><span class="linenos">748</span></a>                    <span class="n">y_min</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Corr.show-749"><a href="#Corr.show-749"><span class="linenos">749</span></a>                    <span class="n">y_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">if</span> <span class="p">(</span><span class="n">x</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">)</span> <span class="ow">and</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">&lt;</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Corr.show-750"><a href="#Corr.show-750"><span class="linenos">750</span></a>                    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">([</span><span class="n">y_min</span> <span class="o">-</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">),</span> <span class="n">y_max</span> <span class="o">+</span> <span class="mf">0.1</span> <span class="o">*</span> <span class="p">(</span><span class="n">y_max</span> <span class="o">-</span> <span class="n">y_min</span><span class="p">)])</span>
+</span><span id="Corr.show-751"><a href="#Corr.show-751"><span class="linenos">751</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="Corr.show-752"><a href="#Corr.show-752"><span class="linenos">752</span></a>                    <span class="k">pass</span>
+</span><span id="Corr.show-753"><a href="#Corr.show-753"><span class="linenos">753</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.show-754"><a href="#Corr.show-754"><span class="linenos">754</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">y_range</span><span class="p">)</span>
+</span><span id="Corr.show-755"><a href="#Corr.show-755"><span class="linenos">755</span></a>        <span class="k">if</span> <span class="n">comp</span><span class="p">:</span>
+</span><span id="Corr.show-756"><a href="#Corr.show-756"><span class="linenos">756</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="p">(</span><span class="n">Corr</span><span class="p">,</span> <span class="nb">list</span><span class="p">)):</span>
+</span><span id="Corr.show-757"><a href="#Corr.show-757"><span class="linenos">757</span></a>                <span class="k">for</span> <span class="n">corr</span> <span class="ow">in</span> <span class="n">comp</span> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">comp</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="k">else</span> <span class="p">[</span><span class="n">comp</span><span class="p">]:</span>
+</span><span id="Corr.show-758"><a href="#Corr.show-758"><span class="linenos">758</span></a>                    <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr.show-759"><a href="#Corr.show-759"><span class="linenos">759</span></a>                        <span class="n">corr</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr.show-760"><a href="#Corr.show-760"><span class="linenos">760</span></a>                    <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span> <span class="o">=</span> <span class="n">corr</span><span class="o">.</span><span class="n">plottable</span><span class="p">()</span>
+</span><span id="Corr.show-761"><a href="#Corr.show-761"><span class="linenos">761</span></a>                    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">y_err</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">corr</span><span class="o">.</span><span class="n">tag</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
+</span><span id="Corr.show-762"><a href="#Corr.show-762"><span class="linenos">762</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.show-763"><a href="#Corr.show-763"><span class="linenos">763</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;comp&#39; must be a correlator or a list of correlators.&quot;</span><span class="p">)</span>
+</span><span id="Corr.show-764"><a href="#Corr.show-764"><span class="linenos">764</span></a>
+</span><span id="Corr.show-765"><a href="#Corr.show-765"><span class="linenos">765</span></a>        <span class="k">if</span> <span class="n">plateau</span><span class="p">:</span>
+</span><span id="Corr.show-766"><a href="#Corr.show-766"><span class="linenos">766</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">plateau</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Corr.show-767"><a href="#Corr.show-767"><span class="linenos">767</span></a>                <span class="k">if</span> <span class="n">auto_gamma</span><span class="p">:</span>
+</span><span id="Corr.show-768"><a href="#Corr.show-768"><span class="linenos">768</span></a>                    <span class="n">plateau</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="Corr.show-769"><a href="#Corr.show-769"><span class="linenos">769</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.6</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">plateau</span><span class="p">))</span>
+</span><span id="Corr.show-770"><a href="#Corr.show-770"><span class="linenos">770</span></a>                <span class="n">ax1</span><span class="o">.</span><span class="n">axhspan</span><span class="p">(</span><span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">plateau</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">plateau</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.color&#39;</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
+</span><span id="Corr.show-771"><a href="#Corr.show-771"><span class="linenos">771</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.show-772"><a href="#Corr.show-772"><span class="linenos">772</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;plateau&#39; must be an Obs&quot;</span><span class="p">)</span>
+</span><span id="Corr.show-773"><a href="#Corr.show-773"><span class="linenos">773</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">:</span>
+</span><span id="Corr.show-774"><a href="#Corr.show-774"><span class="linenos">774</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Corr.show-775"><a href="#Corr.show-775"><span class="linenos">775</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Corr.show-776"><a href="#Corr.show-776"><span class="linenos">776</span></a>
+</span><span id="Corr.show-777"><a href="#Corr.show-777"><span class="linenos">777</span></a>        <span class="k">if</span> <span class="n">fit_res</span><span class="p">:</span>
+</span><span id="Corr.show-778"><a href="#Corr.show-778"><span class="linenos">778</span></a>            <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mf">0.05</span><span class="p">)</span>
+</span><span id="Corr.show-779"><a href="#Corr.show-779"><span class="linenos">779</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span>
+</span><span id="Corr.show-780"><a href="#Corr.show-780"><span class="linenos">780</span></a>                     <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_function</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span>
+</span><span id="Corr.show-781"><a href="#Corr.show-781"><span class="linenos">781</span></a>                     <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="Corr.show-782"><a href="#Corr.show-782"><span class="linenos">782</span></a>
+</span><span id="Corr.show-783"><a href="#Corr.show-783"><span class="linenos">783</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
+</span><span id="Corr.show-784"><a href="#Corr.show-784"><span class="linenos">784</span></a>        <span class="k">if</span> <span class="n">ylabel</span><span class="p">:</span>
+</span><span id="Corr.show-785"><a href="#Corr.show-785"><span class="linenos">785</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="n">ylabel</span><span class="p">)</span>
+</span><span id="Corr.show-786"><a href="#Corr.show-786"><span class="linenos">786</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">x_range</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">,</span> <span class="n">x_range</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">])</span>
+</span><span id="Corr.show-787"><a href="#Corr.show-787"><span class="linenos">787</span></a>
+</span><span id="Corr.show-788"><a href="#Corr.show-788"><span class="linenos">788</span></a>        <span class="n">handles</span><span class="p">,</span> <span class="n">labels</span> <span class="o">=</span> <span class="n">ax1</span><span class="o">.</span><span class="n">get_legend_handles_labels</span><span class="p">()</span>
+</span><span id="Corr.show-789"><a href="#Corr.show-789"><span class="linenos">789</span></a>        <span class="k">if</span> <span class="n">labels</span><span class="p">:</span>
+</span><span id="Corr.show-790"><a href="#Corr.show-790"><span class="linenos">790</span></a>            <span class="n">ax1</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="Corr.show-791"><a href="#Corr.show-791"><span class="linenos">791</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Corr.show-792"><a href="#Corr.show-792"><span class="linenos">792</span></a>
+</span><span id="Corr.show-793"><a href="#Corr.show-793"><span class="linenos">793</span></a>        <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="Corr.show-794"><a href="#Corr.show-794"><span class="linenos">794</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">save</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="Corr.show-795"><a href="#Corr.show-795"><span class="linenos">795</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
+</span><span id="Corr.show-796"><a href="#Corr.show-796"><span class="linenos">796</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.show-797"><a href="#Corr.show-797"><span class="linenos">797</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;save&#39; has to be a string.&quot;</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -3888,35 +3888,35 @@ Apply the gamma method with standard parameters to all correlators and plateau v
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">spaghetti_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Produces a spaghetti plot of the correlator suited to monitor exceptional configurations.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        logscale : bool</span>
-<span class="sd">            Determines whether the scale of the y-axis is logarithmic or standard.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator needs to be projected first.&quot;</span><span class="p">)</span>
-
-        <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]))</span>
-        <span class="n">x0_vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">n</span> <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
-
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
-            <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span><span class="o">.</span><span class="n">T</span>
-
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">ax</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
-                <span class="n">ax</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x0_vals</span><span class="p">,</span> <span class="n">dat</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
-
-            <span class="k">if</span> <span class="n">logscale</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-                <span class="n">ax</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
-
-            <span class="n">ax</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.spaghetti_plot-799"><a href="#Corr.spaghetti_plot-799"><span class="linenos">799</span></a>    <span class="k">def</span> <span class="nf">spaghetti_plot</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">logscale</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="Corr.spaghetti_plot-800"><a href="#Corr.spaghetti_plot-800"><span class="linenos">800</span></a>        <span class="sd">&quot;&quot;&quot;Produces a spaghetti plot of the correlator suited to monitor exceptional configurations.</span>
+</span><span id="Corr.spaghetti_plot-801"><a href="#Corr.spaghetti_plot-801"><span class="linenos">801</span></a>
+</span><span id="Corr.spaghetti_plot-802"><a href="#Corr.spaghetti_plot-802"><span class="linenos">802</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.spaghetti_plot-803"><a href="#Corr.spaghetti_plot-803"><span class="linenos">803</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.spaghetti_plot-804"><a href="#Corr.spaghetti_plot-804"><span class="linenos">804</span></a><span class="sd">        logscale : bool</span>
+</span><span id="Corr.spaghetti_plot-805"><a href="#Corr.spaghetti_plot-805"><span class="linenos">805</span></a><span class="sd">            Determines whether the scale of the y-axis is logarithmic or standard.</span>
+</span><span id="Corr.spaghetti_plot-806"><a href="#Corr.spaghetti_plot-806"><span class="linenos">806</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.spaghetti_plot-807"><a href="#Corr.spaghetti_plot-807"><span class="linenos">807</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Corr.spaghetti_plot-808"><a href="#Corr.spaghetti_plot-808"><span class="linenos">808</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Correlator needs to be projected first.&quot;</span><span class="p">)</span>
+</span><span id="Corr.spaghetti_plot-809"><a href="#Corr.spaghetti_plot-809"><span class="linenos">809</span></a>
+</span><span id="Corr.spaghetti_plot-810"><a href="#Corr.spaghetti_plot-810"><span class="linenos">810</span></a>        <span class="n">mc_names</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]))</span>
+</span><span id="Corr.spaghetti_plot-811"><a href="#Corr.spaghetti_plot-811"><span class="linenos">811</span></a>        <span class="n">x0_vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">n</span> <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">T</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">]</span>
+</span><span id="Corr.spaghetti_plot-812"><a href="#Corr.spaghetti_plot-812"><span class="linenos">812</span></a>
+</span><span id="Corr.spaghetti_plot-813"><a href="#Corr.spaghetti_plot-813"><span class="linenos">813</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">mc_names</span><span class="p">:</span>
+</span><span id="Corr.spaghetti_plot-814"><a href="#Corr.spaghetti_plot-814"><span class="linenos">814</span></a>            <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">])</span><span class="o">.</span><span class="n">T</span>
+</span><span id="Corr.spaghetti_plot-815"><a href="#Corr.spaghetti_plot-815"><span class="linenos">815</span></a>
+</span><span id="Corr.spaghetti_plot-816"><a href="#Corr.spaghetti_plot-816"><span class="linenos">816</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Corr.spaghetti_plot-817"><a href="#Corr.spaghetti_plot-817"><span class="linenos">817</span></a>            <span class="n">ax</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">111</span><span class="p">)</span>
+</span><span id="Corr.spaghetti_plot-818"><a href="#Corr.spaghetti_plot-818"><span class="linenos">818</span></a>            <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">data</span><span class="p">:</span>
+</span><span id="Corr.spaghetti_plot-819"><a href="#Corr.spaghetti_plot-819"><span class="linenos">819</span></a>                <span class="n">ax</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x0_vals</span><span class="p">,</span> <span class="n">dat</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="Corr.spaghetti_plot-820"><a href="#Corr.spaghetti_plot-820"><span class="linenos">820</span></a>
+</span><span id="Corr.spaghetti_plot-821"><a href="#Corr.spaghetti_plot-821"><span class="linenos">821</span></a>            <span class="k">if</span> <span class="n">logscale</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="Corr.spaghetti_plot-822"><a href="#Corr.spaghetti_plot-822"><span class="linenos">822</span></a>                <span class="n">ax</span><span class="o">.</span><span class="n">set_yscale</span><span class="p">(</span><span class="s1">&#39;log&#39;</span><span class="p">)</span>
+</span><span id="Corr.spaghetti_plot-823"><a href="#Corr.spaghetti_plot-823"><span class="linenos">823</span></a>
+</span><span id="Corr.spaghetti_plot-824"><a href="#Corr.spaghetti_plot-824"><span class="linenos">824</span></a>            <span class="n">ax</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$x_0 / a$&#39;</span><span class="p">)</span>
+</span><span id="Corr.spaghetti_plot-825"><a href="#Corr.spaghetti_plot-825"><span class="linenos">825</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="Corr.spaghetti_plot-826"><a href="#Corr.spaghetti_plot-826"><span class="linenos">826</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span></pre></div>
 
         </details>
 
@@ -3942,30 +3942,30 @@ Determines whether the scale of the y-axis is logarithmic or standard.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Dumps the Corr into a file of chosen type</span>
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        filename : str</span>
-<span class="sd">            Name of the file to be saved.</span>
-<span class="sd">        datatype : str</span>
-<span class="sd">            Format of the exported file. Supported formats include</span>
-<span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
-<span class="sd">        path : str</span>
-<span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
-            <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
-            <span class="n">dump_to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_name</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
-            <span class="n">dump_object</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.dump-828"><a href="#Corr.dump-828"><span class="linenos">828</span></a>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Corr.dump-829"><a href="#Corr.dump-829"><span class="linenos">829</span></a>        <span class="sd">&quot;&quot;&quot;Dumps the Corr into a file of chosen type</span>
+</span><span id="Corr.dump-830"><a href="#Corr.dump-830"><span class="linenos">830</span></a><span class="sd">        Parameters</span>
+</span><span id="Corr.dump-831"><a href="#Corr.dump-831"><span class="linenos">831</span></a><span class="sd">        ----------</span>
+</span><span id="Corr.dump-832"><a href="#Corr.dump-832"><span class="linenos">832</span></a><span class="sd">        filename : str</span>
+</span><span id="Corr.dump-833"><a href="#Corr.dump-833"><span class="linenos">833</span></a><span class="sd">            Name of the file to be saved.</span>
+</span><span id="Corr.dump-834"><a href="#Corr.dump-834"><span class="linenos">834</span></a><span class="sd">        datatype : str</span>
+</span><span id="Corr.dump-835"><a href="#Corr.dump-835"><span class="linenos">835</span></a><span class="sd">            Format of the exported file. Supported formats include</span>
+</span><span id="Corr.dump-836"><a href="#Corr.dump-836"><span class="linenos">836</span></a><span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
+</span><span id="Corr.dump-837"><a href="#Corr.dump-837"><span class="linenos">837</span></a><span class="sd">        path : str</span>
+</span><span id="Corr.dump-838"><a href="#Corr.dump-838"><span class="linenos">838</span></a><span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="Corr.dump-839"><a href="#Corr.dump-839"><span class="linenos">839</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Corr.dump-840"><a href="#Corr.dump-840"><span class="linenos">840</span></a>        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
+</span><span id="Corr.dump-841"><a href="#Corr.dump-841"><span class="linenos">841</span></a>            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
+</span><span id="Corr.dump-842"><a href="#Corr.dump-842"><span class="linenos">842</span></a>            <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="Corr.dump-843"><a href="#Corr.dump-843"><span class="linenos">843</span></a>                <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
+</span><span id="Corr.dump-844"><a href="#Corr.dump-844"><span class="linenos">844</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.dump-845"><a href="#Corr.dump-845"><span class="linenos">845</span></a>                <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
+</span><span id="Corr.dump-846"><a href="#Corr.dump-846"><span class="linenos">846</span></a>            <span class="n">dump_to_json</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_name</span><span class="p">)</span>
+</span><span id="Corr.dump-847"><a href="#Corr.dump-847"><span class="linenos">847</span></a>        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
+</span><span id="Corr.dump-848"><a href="#Corr.dump-848"><span class="linenos">848</span></a>            <span class="n">dump_object</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="Corr.dump-849"><a href="#Corr.dump-849"><span class="linenos">849</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Corr.dump-850"><a href="#Corr.dump-850"><span class="linenos">850</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -3996,9 +3996,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">(</span><span class="nb">range</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.print-852"><a href="#Corr.print-852"><span class="linenos">852</span></a>    <span class="k">def</span> <span class="nf">print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="nb">range</span><span class="o">=</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="kc">None</span><span class="p">]):</span>
+</span><span id="Corr.print-853"><a href="#Corr.print-853"><span class="linenos">853</span></a>        <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">(</span><span class="nb">range</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -4015,9 +4015,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">**</span><span class="mf">0.5</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.sqrt-1015"><a href="#Corr.sqrt-1015"><span class="linenos">1015</span></a>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.sqrt-1016"><a href="#Corr.sqrt-1016"><span class="linenos">1016</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">**</span><span class="mf">0.5</span>
+</span></pre></div>
 
         </details>
 
@@ -4034,10 +4034,10 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.log-1018"><a href="#Corr.log-1018"><span class="linenos">1018</span></a>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.log-1019"><a href="#Corr.log-1019"><span class="linenos">1019</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr.log-1020"><a href="#Corr.log-1020"><span class="linenos">1020</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4054,10 +4054,10 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.exp-1022"><a href="#Corr.exp-1022"><span class="linenos">1022</span></a>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.exp-1023"><a href="#Corr.exp-1023"><span class="linenos">1023</span></a>        <span class="n">newcontent</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span> <span class="k">if</span> <span class="p">(</span><span class="n">item</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">)</span> <span class="k">else</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">item</span><span class="p">)</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="Corr.exp-1024"><a href="#Corr.exp-1024"><span class="linenos">1024</span></a>        <span class="k">return</span> <span class="n">Corr</span><span class="p">(</span><span class="n">newcontent</span><span class="p">,</span> <span class="n">prange</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">prange</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4074,9 +4074,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.sin-1037"><a href="#Corr.sin-1037"><span class="linenos">1037</span></a>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.sin-1038"><a href="#Corr.sin-1038"><span class="linenos">1038</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4093,9 +4093,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.cos-1040"><a href="#Corr.cos-1040"><span class="linenos">1040</span></a>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.cos-1041"><a href="#Corr.cos-1041"><span class="linenos">1041</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4112,9 +4112,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.tan-1043"><a href="#Corr.tan-1043"><span class="linenos">1043</span></a>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.tan-1044"><a href="#Corr.tan-1044"><span class="linenos">1044</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4131,9 +4131,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.sinh-1046"><a href="#Corr.sinh-1046"><span class="linenos">1046</span></a>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.sinh-1047"><a href="#Corr.sinh-1047"><span class="linenos">1047</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4150,9 +4150,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.cosh-1049"><a href="#Corr.cosh-1049"><span class="linenos">1049</span></a>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.cosh-1050"><a href="#Corr.cosh-1050"><span class="linenos">1050</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4169,9 +4169,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.tanh-1052"><a href="#Corr.tanh-1052"><span class="linenos">1052</span></a>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.tanh-1053"><a href="#Corr.tanh-1053"><span class="linenos">1053</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4188,9 +4188,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsin</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.arcsin-1055"><a href="#Corr.arcsin-1055"><span class="linenos">1055</span></a>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.arcsin-1056"><a href="#Corr.arcsin-1056"><span class="linenos">1056</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsin</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4207,9 +4207,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccos</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.arccos-1058"><a href="#Corr.arccos-1058"><span class="linenos">1058</span></a>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.arccos-1059"><a href="#Corr.arccos-1059"><span class="linenos">1059</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccos</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4226,9 +4226,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctan</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.arctan-1061"><a href="#Corr.arctan-1061"><span class="linenos">1061</span></a>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.arctan-1062"><a href="#Corr.arctan-1062"><span class="linenos">1062</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctan</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4245,9 +4245,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.arcsinh-1064"><a href="#Corr.arcsinh-1064"><span class="linenos">1064</span></a>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.arcsinh-1065"><a href="#Corr.arcsinh-1065"><span class="linenos">1065</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4264,9 +4264,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.arccosh-1067"><a href="#Corr.arccosh-1067"><span class="linenos">1067</span></a>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.arccosh-1068"><a href="#Corr.arccosh-1068"><span class="linenos">1068</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arccosh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4283,9 +4283,9 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctanh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Corr.arctanh-1070"><a href="#Corr.arctanh-1070"><span class="linenos">1070</span></a>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Corr.arctanh-1071"><a href="#Corr.arctanh-1071"><span class="linenos">1071</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_apply_func_to_corr</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arctanh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/covobs.html b/docs/pyerrors/covobs.html
index 8549310b..60de2877 100644
--- a/docs/pyerrors/covobs.html
+++ b/docs/pyerrors/covobs.html
@@ -3,14 +3,14 @@
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@@ -69,7 +69,7 @@
 
 
 
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@@ -84,111 +84,111 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-
-<span class="k">class</span> <span class="nc">Covobs</span><span class="p">:</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mean</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize Covobs object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mean : float</span>
-<span class="sd">            Mean value of the new Obs</span>
-<span class="sd">        cov : list or array</span>
-<span class="sd">            2d Covariance matrix or 1d diagonal entries</span>
-<span class="sd">        name : str</span>
-<span class="sd">            identifier for the covariance matrix</span>
-<span class="sd">        pos : int</span>
-<span class="sd">            Position of the variance belonging to mean in cov.</span>
-<span class="sd">            Is taken to be 1 if cov is 0-dimensional</span>
-<span class="sd">        grad : list or array</span>
-<span class="sd">            Gradient of the Covobs wrt. the means belonging to cov.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_set_cov</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
-        <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Covobs name must not contain replica separator &#39;|&#39;.&quot;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
-        <span class="k">if</span> <span class="n">grad</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">pos</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">pos</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Have to specify position of cov-element belonging to mean!&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">pos</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;pos </span><span class="si">%d</span><span class="s1"> too large for covariance matrix with dimension </span><span class="si">%d</span><span class="s1">x</span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pos</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_set_grad</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">=</span> <span class="n">mean</span>
-
-    <span class="k">def</span> <span class="nf">errsq</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Return the variance (= square of the error) of the Covobs</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
-
-    <span class="k">def</span> <span class="nf">_set_cov</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cov</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Set the covariance matrix of the covobs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        cov : list or array</span>
-<span class="sd">            Has to be either of:</span>
-<span class="sd">            0 dimensional number: variance of a single covobs,</span>
-<span class="sd">            1 dimensional list or array of lenght N: variances of multiple covobs</span>
-<span class="sd">            2 dimensional list or array (N x N): Symmetric, positive-semidefinite covariance matrix</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a square matrix!&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a 2 dimensional square matrix!&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">j</span><span class="p">][</span><span class="n">i</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is non-symmetric for (</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">))</span>
-
-        <span class="n">evals</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigvalsh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">ev</span> <span class="ow">in</span> <span class="n">evals</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">ev</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is not positive-semidefinite!&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_set_grad</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">grad</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Set the gradient of the covobs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        grad : list or array</span>
-<span class="sd">            Has to be either of:</span>
-<span class="sd">            0 dimensional number: gradient w.r.t. a single covobs,</span>
-<span class="sd">            1 dimensional list or array of lenght N: gradient w.r.t. multiple covobs</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Invalid dimension of grad!&#39;</span><span class="p">)</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">cov</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">grad</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="k">class</span> <span class="nc">Covobs</span><span class="p">:</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mean</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a>        <span class="sd">&quot;&quot;&quot; Initialize Covobs object.</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="sd">        Parameters</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="sd">        ----------</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="sd">        mean : float</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="sd">            Mean value of the new Obs</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="sd">        cov : list or array</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="sd">            2d Covariance matrix or 1d diagonal entries</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd">        name : str</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd">            identifier for the covariance matrix</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd">        pos : int</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="sd">            Position of the variance belonging to mean in cov.</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="sd">            Is taken to be 1 if cov is 0-dimensional</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd">        grad : list or array</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd">            Gradient of the Covobs wrt. the means belonging to cov.</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_set_cov</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a>        <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Covobs name must not contain replica separator &#39;|&#39;.&quot;</span><span class="p">)</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>        <span class="k">if</span> <span class="n">grad</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>            <span class="k">if</span> <span class="n">pos</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a>                    <span class="n">pos</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Have to specify position of cov-element belonging to mean!&#39;</span><span class="p">)</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>                <span class="k">if</span> <span class="n">pos</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;pos </span><span class="si">%d</span><span class="s1"> too large for covariance matrix with dimension </span><span class="si">%d</span><span class="s1">x</span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pos</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_set_grad</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a>    <span class="k">def</span> <span class="nf">errsq</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>        <span class="sd">&quot;&quot;&quot; Return the variance (= square of the error) of the Covobs</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>    <span class="k">def</span> <span class="nf">_set_cov</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cov</span><span class="p">):</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>        <span class="sd">&quot;&quot;&quot; Set the covariance matrix of the covobs</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a><span class="sd">        Parameters</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a><span class="sd">        ----------</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a><span class="sd">        cov : list or array</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a><span class="sd">            Has to be either of:</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a><span class="sd">            0 dimensional number: variance of a single covobs,</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a><span class="sd">            1 dimensional list or array of lenght N: variances of multiple covobs</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a><span class="sd">            2 dimensional list or array (N x N): Symmetric, positive-semidefinite covariance matrix</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">])</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a>        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a square matrix!&#39;</span><span class="p">)</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a 2 dimensional square matrix!&#39;</span><span class="p">)</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a>            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">j</span><span class="p">][</span><span class="n">i</span><span class="p">]:</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is non-symmetric for (</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">))</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>        <span class="n">evals</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigvalsh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>        <span class="k">for</span> <span class="n">ev</span> <span class="ow">in</span> <span class="n">evals</span><span class="p">:</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>            <span class="k">if</span> <span class="n">ev</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is not positive-semidefinite!&#39;</span><span class="p">)</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>    <span class="k">def</span> <span class="nf">_set_grad</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">grad</span><span class="p">):</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>        <span class="sd">&quot;&quot;&quot; Set the gradient of the covobs</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a><span class="sd">        Parameters</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a><span class="sd">        ----------</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a><span class="sd">        grad : list or array</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a><span class="sd">            Has to be either of:</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a><span class="sd">            0 dimensional number: gradient w.r.t. a single covobs,</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a><span class="sd">            1 dimensional list or array of lenght N: gradient w.r.t. multiple covobs</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]:</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Invalid dimension of grad!&#39;</span><span class="p">)</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>    <span class="nd">@property</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>    <span class="k">def</span> <span class="nf">cov</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>    <span class="nd">@property</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>    <span class="k">def</span> <span class="nf">grad</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span>
+</span></pre></div>
 
         </details>
 
@@ -204,108 +204,108 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">class</span> <span class="nc">Covobs</span><span class="p">:</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mean</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize Covobs object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mean : float</span>
-<span class="sd">            Mean value of the new Obs</span>
-<span class="sd">        cov : list or array</span>
-<span class="sd">            2d Covariance matrix or 1d diagonal entries</span>
-<span class="sd">        name : str</span>
-<span class="sd">            identifier for the covariance matrix</span>
-<span class="sd">        pos : int</span>
-<span class="sd">            Position of the variance belonging to mean in cov.</span>
-<span class="sd">            Is taken to be 1 if cov is 0-dimensional</span>
-<span class="sd">        grad : list or array</span>
-<span class="sd">            Gradient of the Covobs wrt. the means belonging to cov.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_set_cov</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
-        <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Covobs name must not contain replica separator &#39;|&#39;.&quot;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
-        <span class="k">if</span> <span class="n">grad</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">pos</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">pos</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Have to specify position of cov-element belonging to mean!&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">pos</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;pos </span><span class="si">%d</span><span class="s1"> too large for covariance matrix with dimension </span><span class="si">%d</span><span class="s1">x</span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pos</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_set_grad</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">=</span> <span class="n">mean</span>
-
-    <span class="k">def</span> <span class="nf">errsq</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Return the variance (= square of the error) of the Covobs</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
-
-    <span class="k">def</span> <span class="nf">_set_cov</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cov</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Set the covariance matrix of the covobs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        cov : list or array</span>
-<span class="sd">            Has to be either of:</span>
-<span class="sd">            0 dimensional number: variance of a single covobs,</span>
-<span class="sd">            1 dimensional list or array of lenght N: variances of multiple covobs</span>
-<span class="sd">            2 dimensional list or array (N x N): Symmetric, positive-semidefinite covariance matrix</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">])</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a square matrix!&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a 2 dimensional square matrix!&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">j</span><span class="p">][</span><span class="n">i</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is non-symmetric for (</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">))</span>
-
-        <span class="n">evals</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigvalsh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">ev</span> <span class="ow">in</span> <span class="n">evals</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">ev</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is not positive-semidefinite!&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_set_grad</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">grad</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Set the gradient of the covobs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        grad : list or array</span>
-<span class="sd">            Has to be either of:</span>
-<span class="sd">            0 dimensional number: gradient w.r.t. a single covobs,</span>
-<span class="sd">            1 dimensional list or array of lenght N: gradient w.r.t. multiple covobs</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Invalid dimension of grad!&#39;</span><span class="p">)</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">cov</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">grad</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Covobs-4"><a href="#Covobs-4"><span class="linenos">  4</span></a><span class="k">class</span> <span class="nc">Covobs</span><span class="p">:</span>
+</span><span id="Covobs-5"><a href="#Covobs-5"><span class="linenos">  5</span></a>
+</span><span id="Covobs-6"><a href="#Covobs-6"><span class="linenos">  6</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mean</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Covobs-7"><a href="#Covobs-7"><span class="linenos">  7</span></a>        <span class="sd">&quot;&quot;&quot; Initialize Covobs object.</span>
+</span><span id="Covobs-8"><a href="#Covobs-8"><span class="linenos">  8</span></a>
+</span><span id="Covobs-9"><a href="#Covobs-9"><span class="linenos">  9</span></a><span class="sd">        Parameters</span>
+</span><span id="Covobs-10"><a href="#Covobs-10"><span class="linenos"> 10</span></a><span class="sd">        ----------</span>
+</span><span id="Covobs-11"><a href="#Covobs-11"><span class="linenos"> 11</span></a><span class="sd">        mean : float</span>
+</span><span id="Covobs-12"><a href="#Covobs-12"><span class="linenos"> 12</span></a><span class="sd">            Mean value of the new Obs</span>
+</span><span id="Covobs-13"><a href="#Covobs-13"><span class="linenos"> 13</span></a><span class="sd">        cov : list or array</span>
+</span><span id="Covobs-14"><a href="#Covobs-14"><span class="linenos"> 14</span></a><span class="sd">            2d Covariance matrix or 1d diagonal entries</span>
+</span><span id="Covobs-15"><a href="#Covobs-15"><span class="linenos"> 15</span></a><span class="sd">        name : str</span>
+</span><span id="Covobs-16"><a href="#Covobs-16"><span class="linenos"> 16</span></a><span class="sd">            identifier for the covariance matrix</span>
+</span><span id="Covobs-17"><a href="#Covobs-17"><span class="linenos"> 17</span></a><span class="sd">        pos : int</span>
+</span><span id="Covobs-18"><a href="#Covobs-18"><span class="linenos"> 18</span></a><span class="sd">            Position of the variance belonging to mean in cov.</span>
+</span><span id="Covobs-19"><a href="#Covobs-19"><span class="linenos"> 19</span></a><span class="sd">            Is taken to be 1 if cov is 0-dimensional</span>
+</span><span id="Covobs-20"><a href="#Covobs-20"><span class="linenos"> 20</span></a><span class="sd">        grad : list or array</span>
+</span><span id="Covobs-21"><a href="#Covobs-21"><span class="linenos"> 21</span></a><span class="sd">            Gradient of the Covobs wrt. the means belonging to cov.</span>
+</span><span id="Covobs-22"><a href="#Covobs-22"><span class="linenos"> 22</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Covobs-23"><a href="#Covobs-23"><span class="linenos"> 23</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_set_cov</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
+</span><span id="Covobs-24"><a href="#Covobs-24"><span class="linenos"> 24</span></a>        <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
+</span><span id="Covobs-25"><a href="#Covobs-25"><span class="linenos"> 25</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Covobs name must not contain replica separator &#39;|&#39;.&quot;</span><span class="p">)</span>
+</span><span id="Covobs-26"><a href="#Covobs-26"><span class="linenos"> 26</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
+</span><span id="Covobs-27"><a href="#Covobs-27"><span class="linenos"> 27</span></a>        <span class="k">if</span> <span class="n">grad</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Covobs-28"><a href="#Covobs-28"><span class="linenos"> 28</span></a>            <span class="k">if</span> <span class="n">pos</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Covobs-29"><a href="#Covobs-29"><span class="linenos"> 29</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Covobs-30"><a href="#Covobs-30"><span class="linenos"> 30</span></a>                    <span class="n">pos</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Covobs-31"><a href="#Covobs-31"><span class="linenos"> 31</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Covobs-32"><a href="#Covobs-32"><span class="linenos"> 32</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Have to specify position of cov-element belonging to mean!&#39;</span><span class="p">)</span>
+</span><span id="Covobs-33"><a href="#Covobs-33"><span class="linenos"> 33</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Covobs-34"><a href="#Covobs-34"><span class="linenos"> 34</span></a>                <span class="k">if</span> <span class="n">pos</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
+</span><span id="Covobs-35"><a href="#Covobs-35"><span class="linenos"> 35</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;pos </span><span class="si">%d</span><span class="s1"> too large for covariance matrix with dimension </span><span class="si">%d</span><span class="s1">x</span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pos</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
+</span><span id="Covobs-36"><a href="#Covobs-36"><span class="linenos"> 36</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Covobs-37"><a href="#Covobs-37"><span class="linenos"> 37</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.</span>
+</span><span id="Covobs-38"><a href="#Covobs-38"><span class="linenos"> 38</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Covobs-39"><a href="#Covobs-39"><span class="linenos"> 39</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_set_grad</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
+</span><span id="Covobs-40"><a href="#Covobs-40"><span class="linenos"> 40</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="Covobs-41"><a href="#Covobs-41"><span class="linenos"> 41</span></a>
+</span><span id="Covobs-42"><a href="#Covobs-42"><span class="linenos"> 42</span></a>    <span class="k">def</span> <span class="nf">errsq</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Covobs-43"><a href="#Covobs-43"><span class="linenos"> 43</span></a>        <span class="sd">&quot;&quot;&quot; Return the variance (= square of the error) of the Covobs</span>
+</span><span id="Covobs-44"><a href="#Covobs-44"><span class="linenos"> 44</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Covobs-45"><a href="#Covobs-45"><span class="linenos"> 45</span></a>        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
+</span><span id="Covobs-46"><a href="#Covobs-46"><span class="linenos"> 46</span></a>
+</span><span id="Covobs-47"><a href="#Covobs-47"><span class="linenos"> 47</span></a>    <span class="k">def</span> <span class="nf">_set_cov</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">cov</span><span class="p">):</span>
+</span><span id="Covobs-48"><a href="#Covobs-48"><span class="linenos"> 48</span></a>        <span class="sd">&quot;&quot;&quot; Set the covariance matrix of the covobs</span>
+</span><span id="Covobs-49"><a href="#Covobs-49"><span class="linenos"> 49</span></a>
+</span><span id="Covobs-50"><a href="#Covobs-50"><span class="linenos"> 50</span></a><span class="sd">        Parameters</span>
+</span><span id="Covobs-51"><a href="#Covobs-51"><span class="linenos"> 51</span></a><span class="sd">        ----------</span>
+</span><span id="Covobs-52"><a href="#Covobs-52"><span class="linenos"> 52</span></a><span class="sd">        cov : list or array</span>
+</span><span id="Covobs-53"><a href="#Covobs-53"><span class="linenos"> 53</span></a><span class="sd">            Has to be either of:</span>
+</span><span id="Covobs-54"><a href="#Covobs-54"><span class="linenos"> 54</span></a><span class="sd">            0 dimensional number: variance of a single covobs,</span>
+</span><span id="Covobs-55"><a href="#Covobs-55"><span class="linenos"> 55</span></a><span class="sd">            1 dimensional list or array of lenght N: variances of multiple covobs</span>
+</span><span id="Covobs-56"><a href="#Covobs-56"><span class="linenos"> 56</span></a><span class="sd">            2 dimensional list or array (N x N): Symmetric, positive-semidefinite covariance matrix</span>
+</span><span id="Covobs-57"><a href="#Covobs-57"><span class="linenos"> 57</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Covobs-58"><a href="#Covobs-58"><span class="linenos"> 58</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
+</span><span id="Covobs-59"><a href="#Covobs-59"><span class="linenos"> 59</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Covobs-60"><a href="#Covobs-60"><span class="linenos"> 60</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="Covobs-61"><a href="#Covobs-61"><span class="linenos"> 61</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">])</span>
+</span><span id="Covobs-62"><a href="#Covobs-62"><span class="linenos"> 62</span></a>        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Covobs-63"><a href="#Covobs-63"><span class="linenos"> 63</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
+</span><span id="Covobs-64"><a href="#Covobs-64"><span class="linenos"> 64</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
+</span><span id="Covobs-65"><a href="#Covobs-65"><span class="linenos"> 65</span></a>        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Covobs-66"><a href="#Covobs-66"><span class="linenos"> 66</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Covobs-67"><a href="#Covobs-67"><span class="linenos"> 67</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
+</span><span id="Covobs-68"><a href="#Covobs-68"><span class="linenos"> 68</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a square matrix!&#39;</span><span class="p">)</span>
+</span><span id="Covobs-69"><a href="#Covobs-69"><span class="linenos"> 69</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Covobs-70"><a href="#Covobs-70"><span class="linenos"> 70</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix has to be a 2 dimensional square matrix!&#39;</span><span class="p">)</span>
+</span><span id="Covobs-71"><a href="#Covobs-71"><span class="linenos"> 71</span></a>
+</span><span id="Covobs-72"><a href="#Covobs-72"><span class="linenos"> 72</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">):</span>
+</span><span id="Covobs-73"><a href="#Covobs-73"><span class="linenos"> 73</span></a>            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="Covobs-74"><a href="#Covobs-74"><span class="linenos"> 74</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="n">j</span><span class="p">]</span> <span class="o">==</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">[</span><span class="n">j</span><span class="p">][</span><span class="n">i</span><span class="p">]:</span>
+</span><span id="Covobs-75"><a href="#Covobs-75"><span class="linenos"> 75</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is non-symmetric for (</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">))</span>
+</span><span id="Covobs-76"><a href="#Covobs-76"><span class="linenos"> 76</span></a>
+</span><span id="Covobs-77"><a href="#Covobs-77"><span class="linenos"> 77</span></a>        <span class="n">evals</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigvalsh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_cov</span><span class="p">)</span>
+</span><span id="Covobs-78"><a href="#Covobs-78"><span class="linenos"> 78</span></a>        <span class="k">for</span> <span class="n">ev</span> <span class="ow">in</span> <span class="n">evals</span><span class="p">:</span>
+</span><span id="Covobs-79"><a href="#Covobs-79"><span class="linenos"> 79</span></a>            <span class="k">if</span> <span class="n">ev</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Covobs-80"><a href="#Covobs-80"><span class="linenos"> 80</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Covariance matrix is not positive-semidefinite!&#39;</span><span class="p">)</span>
+</span><span id="Covobs-81"><a href="#Covobs-81"><span class="linenos"> 81</span></a>
+</span><span id="Covobs-82"><a href="#Covobs-82"><span class="linenos"> 82</span></a>    <span class="k">def</span> <span class="nf">_set_grad</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">grad</span><span class="p">):</span>
+</span><span id="Covobs-83"><a href="#Covobs-83"><span class="linenos"> 83</span></a>        <span class="sd">&quot;&quot;&quot; Set the gradient of the covobs</span>
+</span><span id="Covobs-84"><a href="#Covobs-84"><span class="linenos"> 84</span></a>
+</span><span id="Covobs-85"><a href="#Covobs-85"><span class="linenos"> 85</span></a><span class="sd">        Parameters</span>
+</span><span id="Covobs-86"><a href="#Covobs-86"><span class="linenos"> 86</span></a><span class="sd">        ----------</span>
+</span><span id="Covobs-87"><a href="#Covobs-87"><span class="linenos"> 87</span></a><span class="sd">        grad : list or array</span>
+</span><span id="Covobs-88"><a href="#Covobs-88"><span class="linenos"> 88</span></a><span class="sd">            Has to be either of:</span>
+</span><span id="Covobs-89"><a href="#Covobs-89"><span class="linenos"> 89</span></a><span class="sd">            0 dimensional number: gradient w.r.t. a single covobs,</span>
+</span><span id="Covobs-90"><a href="#Covobs-90"><span class="linenos"> 90</span></a><span class="sd">            1 dimensional list or array of lenght N: gradient w.r.t. multiple covobs</span>
+</span><span id="Covobs-91"><a href="#Covobs-91"><span class="linenos"> 91</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Covobs-92"><a href="#Covobs-92"><span class="linenos"> 92</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
+</span><span id="Covobs-93"><a href="#Covobs-93"><span class="linenos"> 93</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]:</span>
+</span><span id="Covobs-94"><a href="#Covobs-94"><span class="linenos"> 94</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Covobs-95"><a href="#Covobs-95"><span class="linenos"> 95</span></a>        <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="o">.</span><span class="n">ndim</span> <span class="o">!=</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Covobs-96"><a href="#Covobs-96"><span class="linenos"> 96</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Invalid dimension of grad!&#39;</span><span class="p">)</span>
+</span><span id="Covobs-97"><a href="#Covobs-97"><span class="linenos"> 97</span></a>
+</span><span id="Covobs-98"><a href="#Covobs-98"><span class="linenos"> 98</span></a>    <span class="nd">@property</span>
+</span><span id="Covobs-99"><a href="#Covobs-99"><span class="linenos"> 99</span></a>    <span class="k">def</span> <span class="nf">cov</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Covobs-100"><a href="#Covobs-100"><span class="linenos">100</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span>
+</span><span id="Covobs-101"><a href="#Covobs-101"><span class="linenos">101</span></a>
+</span><span id="Covobs-102"><a href="#Covobs-102"><span class="linenos">102</span></a>    <span class="nd">@property</span>
+</span><span id="Covobs-103"><a href="#Covobs-103"><span class="linenos">103</span></a>    <span class="k">def</span> <span class="nf">grad</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Covobs-104"><a href="#Covobs-104"><span class="linenos">104</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span>
+</span></pre></div>
 
         </details>
 
@@ -320,42 +320,42 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mean</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize Covobs object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        mean : float</span>
-<span class="sd">            Mean value of the new Obs</span>
-<span class="sd">        cov : list or array</span>
-<span class="sd">            2d Covariance matrix or 1d diagonal entries</span>
-<span class="sd">        name : str</span>
-<span class="sd">            identifier for the covariance matrix</span>
-<span class="sd">        pos : int</span>
-<span class="sd">            Position of the variance belonging to mean in cov.</span>
-<span class="sd">            Is taken to be 1 if cov is 0-dimensional</span>
-<span class="sd">        grad : list or array</span>
-<span class="sd">            Gradient of the Covobs wrt. the means belonging to cov.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_set_cov</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
-        <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Covobs name must not contain replica separator &#39;|&#39;.&quot;</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
-        <span class="k">if</span> <span class="n">grad</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">pos</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">pos</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Have to specify position of cov-element belonging to mean!&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">pos</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;pos </span><span class="si">%d</span><span class="s1"> too large for covariance matrix with dimension </span><span class="si">%d</span><span class="s1">x</span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pos</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_set_grad</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">=</span> <span class="n">mean</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Covobs.__init__-6"><a href="#Covobs.__init__-6"><span class="linenos"> 6</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">mean</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Covobs.__init__-7"><a href="#Covobs.__init__-7"><span class="linenos"> 7</span></a>        <span class="sd">&quot;&quot;&quot; Initialize Covobs object.</span>
+</span><span id="Covobs.__init__-8"><a href="#Covobs.__init__-8"><span class="linenos"> 8</span></a>
+</span><span id="Covobs.__init__-9"><a href="#Covobs.__init__-9"><span class="linenos"> 9</span></a><span class="sd">        Parameters</span>
+</span><span id="Covobs.__init__-10"><a href="#Covobs.__init__-10"><span class="linenos">10</span></a><span class="sd">        ----------</span>
+</span><span id="Covobs.__init__-11"><a href="#Covobs.__init__-11"><span class="linenos">11</span></a><span class="sd">        mean : float</span>
+</span><span id="Covobs.__init__-12"><a href="#Covobs.__init__-12"><span class="linenos">12</span></a><span class="sd">            Mean value of the new Obs</span>
+</span><span id="Covobs.__init__-13"><a href="#Covobs.__init__-13"><span class="linenos">13</span></a><span class="sd">        cov : list or array</span>
+</span><span id="Covobs.__init__-14"><a href="#Covobs.__init__-14"><span class="linenos">14</span></a><span class="sd">            2d Covariance matrix or 1d diagonal entries</span>
+</span><span id="Covobs.__init__-15"><a href="#Covobs.__init__-15"><span class="linenos">15</span></a><span class="sd">        name : str</span>
+</span><span id="Covobs.__init__-16"><a href="#Covobs.__init__-16"><span class="linenos">16</span></a><span class="sd">            identifier for the covariance matrix</span>
+</span><span id="Covobs.__init__-17"><a href="#Covobs.__init__-17"><span class="linenos">17</span></a><span class="sd">        pos : int</span>
+</span><span id="Covobs.__init__-18"><a href="#Covobs.__init__-18"><span class="linenos">18</span></a><span class="sd">            Position of the variance belonging to mean in cov.</span>
+</span><span id="Covobs.__init__-19"><a href="#Covobs.__init__-19"><span class="linenos">19</span></a><span class="sd">            Is taken to be 1 if cov is 0-dimensional</span>
+</span><span id="Covobs.__init__-20"><a href="#Covobs.__init__-20"><span class="linenos">20</span></a><span class="sd">        grad : list or array</span>
+</span><span id="Covobs.__init__-21"><a href="#Covobs.__init__-21"><span class="linenos">21</span></a><span class="sd">            Gradient of the Covobs wrt. the means belonging to cov.</span>
+</span><span id="Covobs.__init__-22"><a href="#Covobs.__init__-22"><span class="linenos">22</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Covobs.__init__-23"><a href="#Covobs.__init__-23"><span class="linenos">23</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_set_cov</span><span class="p">(</span><span class="n">cov</span><span class="p">)</span>
+</span><span id="Covobs.__init__-24"><a href="#Covobs.__init__-24"><span class="linenos">24</span></a>        <span class="k">if</span> <span class="s1">&#39;|&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
+</span><span id="Covobs.__init__-25"><a href="#Covobs.__init__-25"><span class="linenos">25</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Covobs name must not contain replica separator &#39;|&#39;.&quot;</span><span class="p">)</span>
+</span><span id="Covobs.__init__-26"><a href="#Covobs.__init__-26"><span class="linenos">26</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="n">name</span>
+</span><span id="Covobs.__init__-27"><a href="#Covobs.__init__-27"><span class="linenos">27</span></a>        <span class="k">if</span> <span class="n">grad</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Covobs.__init__-28"><a href="#Covobs.__init__-28"><span class="linenos">28</span></a>            <span class="k">if</span> <span class="n">pos</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Covobs.__init__-29"><a href="#Covobs.__init__-29"><span class="linenos">29</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Covobs.__init__-30"><a href="#Covobs.__init__-30"><span class="linenos">30</span></a>                    <span class="n">pos</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Covobs.__init__-31"><a href="#Covobs.__init__-31"><span class="linenos">31</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Covobs.__init__-32"><a href="#Covobs.__init__-32"><span class="linenos">32</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Have to specify position of cov-element belonging to mean!&#39;</span><span class="p">)</span>
+</span><span id="Covobs.__init__-33"><a href="#Covobs.__init__-33"><span class="linenos">33</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Covobs.__init__-34"><a href="#Covobs.__init__-34"><span class="linenos">34</span></a>                <span class="k">if</span> <span class="n">pos</span> <span class="o">&gt;</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">:</span>
+</span><span id="Covobs.__init__-35"><a href="#Covobs.__init__-35"><span class="linenos">35</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;pos </span><span class="si">%d</span><span class="s1"> too large for covariance matrix with dimension </span><span class="si">%d</span><span class="s1">x</span><span class="si">%d</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pos</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
+</span><span id="Covobs.__init__-36"><a href="#Covobs.__init__-36"><span class="linenos">36</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Covobs.__init__-37"><a href="#Covobs.__init__-37"><span class="linenos">37</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_grad</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.</span>
+</span><span id="Covobs.__init__-38"><a href="#Covobs.__init__-38"><span class="linenos">38</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Covobs.__init__-39"><a href="#Covobs.__init__-39"><span class="linenos">39</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_set_grad</span><span class="p">(</span><span class="n">grad</span><span class="p">)</span>
+</span><span id="Covobs.__init__-40"><a href="#Covobs.__init__-40"><span class="linenos">40</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">=</span> <span class="n">mean</span>
+</span></pre></div>
 
         </details>
 
@@ -390,11 +390,11 @@ Gradient of the Covobs wrt. the means belonging to cov.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">errsq</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Return the variance (= square of the error) of the Covobs</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Covobs.errsq-42"><a href="#Covobs.errsq-42"><span class="linenos">42</span></a>    <span class="k">def</span> <span class="nf">errsq</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Covobs.errsq-43"><a href="#Covobs.errsq-43"><span class="linenos">43</span></a>        <span class="sd">&quot;&quot;&quot; Return the variance (= square of the error) of the Covobs</span>
+</span><span id="Covobs.errsq-44"><a href="#Covobs.errsq-44"><span class="linenos">44</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Covobs.errsq-45"><a href="#Covobs.errsq-45"><span class="linenos">45</span></a>        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/dirac.html b/docs/pyerrors/dirac.html
index 79e53b4a..7f633dca 100644
--- a/docs/pyerrors/dirac.html
+++ b/docs/pyerrors/dirac.html
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@@ -60,7 +60,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
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@@ -75,92 +75,92 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-
-
-<span class="n">gammaX</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
-    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
-<span class="n">gammaY</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
-    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
-<span class="n">gammaZ</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">],</span> <span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
-    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
-<span class="n">gammaT</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
-    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
-<span class="n">gamma</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">gammaX</span><span class="p">,</span> <span class="n">gammaY</span><span class="p">,</span> <span class="n">gammaZ</span><span class="p">,</span> <span class="n">gammaT</span><span class="p">])</span>
-<span class="n">gamma5</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-    <span class="p">[[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]],</span>
-    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
-<span class="n">identity</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-    <span class="p">[[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]],</span>
-    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">epsilon_tensor</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Rank-3 epsilon tensor</span>
-
-<span class="sd">    Based on https://codegolf.stackexchange.com/a/160375</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">))):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
-
-
-<span class="k">def</span> <span class="nf">epsilon_tensor_rank4</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Rank-4 epsilon tensor</span>
-
-<span class="sd">    Extension of https://codegolf.stackexchange.com/a/160375</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">o</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">/</span> <span class="mi">12</span>
-
-
-<span class="k">def</span> <span class="nf">Grid_gamma</span><span class="p">(</span><span class="n">gamma_tag</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Returns gamma matrix in Grid labeling.&quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Identity&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">identity</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaX&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaY&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZ&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaXGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaYGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaTGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXZ&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unkown gamma structure&#39;</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">g</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos"> 0</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos"> 1</span></a>
+</span><span id="L-2"><a href="#L-2"><span class="linenos"> 2</span></a>
+</span><span id="L-3"><a href="#L-3"><span class="linenos"> 3</span></a><span class="n">gammaX</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos"> 4</span></a>    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a>    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="n">gammaY</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a>    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a>    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="n">gammaZ</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos">10</span></a>    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">],</span> <span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="n">j</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos">11</span></a>    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos">12</span></a><span class="n">gammaT</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos">13</span></a>    <span class="p">[[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">]],</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos">14</span></a>    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos">15</span></a><span class="n">gamma</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">gammaX</span><span class="p">,</span> <span class="n">gammaY</span><span class="p">,</span> <span class="n">gammaZ</span><span class="p">,</span> <span class="n">gammaT</span><span class="p">])</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos">16</span></a><span class="n">gamma5</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos">17</span></a>    <span class="p">[[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">]],</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos">18</span></a>    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos">19</span></a><span class="n">identity</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos">20</span></a>    <span class="p">[[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">]],</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos">21</span></a>    <span class="n">dtype</span><span class="o">=</span><span class="nb">complex</span><span class="p">)</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos">22</span></a>
+</span><span id="L-23"><a href="#L-23"><span class="linenos">23</span></a>
+</span><span id="L-24"><a href="#L-24"><span class="linenos">24</span></a><span class="k">def</span> <span class="nf">epsilon_tensor</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">):</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos">25</span></a>    <span class="sd">&quot;&quot;&quot;Rank-3 epsilon tensor</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos">26</span></a>
+</span><span id="L-27"><a href="#L-27"><span class="linenos">27</span></a><span class="sd">    Based on https://codegolf.stackexchange.com/a/160375</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos">28</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos">29</span></a>    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos">30</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">))):</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos">31</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos">32</span></a>
+</span><span id="L-33"><a href="#L-33"><span class="linenos">33</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos">34</span></a>
+</span><span id="L-35"><a href="#L-35"><span class="linenos">35</span></a>
+</span><span id="L-36"><a href="#L-36"><span class="linenos">36</span></a><span class="k">def</span> <span class="nf">epsilon_tensor_rank4</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">):</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos">37</span></a>    <span class="sd">&quot;&quot;&quot;Rank-4 epsilon tensor</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos">38</span></a>
+</span><span id="L-39"><a href="#L-39"><span class="linenos">39</span></a><span class="sd">    Extension of https://codegolf.stackexchange.com/a/160375</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos">40</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos">41</span></a>    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos">42</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))):</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos">43</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos">44</span></a>
+</span><span id="L-45"><a href="#L-45"><span class="linenos">45</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">o</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">/</span> <span class="mi">12</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos">46</span></a>
+</span><span id="L-47"><a href="#L-47"><span class="linenos">47</span></a>
+</span><span id="L-48"><a href="#L-48"><span class="linenos">48</span></a><span class="k">def</span> <span class="nf">Grid_gamma</span><span class="p">(</span><span class="n">gamma_tag</span><span class="p">):</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos">49</span></a>    <span class="sd">&quot;&quot;&quot;Returns gamma matrix in Grid labeling.&quot;&quot;&quot;</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos">50</span></a>    <span class="k">if</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Identity&#39;</span><span class="p">:</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos">51</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">identity</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos">52</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">:</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos">53</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma5</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos">54</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaX&#39;</span><span class="p">:</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos">55</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos">56</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaY&#39;</span><span class="p">:</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos">57</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos">58</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZ&#39;</span><span class="p">:</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos">59</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos">60</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaT&#39;</span><span class="p">:</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos">61</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos">62</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaXGamma5&#39;</span><span class="p">:</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos">63</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos">64</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaYGamma5&#39;</span><span class="p">:</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos">65</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos">66</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZGamma5&#39;</span><span class="p">:</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos">67</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos">68</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaTGamma5&#39;</span><span class="p">:</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos">69</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos">70</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">:</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos">71</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos">72</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">:</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos">73</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos">74</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXZ&#39;</span><span class="p">:</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos">75</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos">76</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYT&#39;</span><span class="p">:</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos">77</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos">78</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">:</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos">79</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos">80</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">:</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos">81</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos">82</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos">83</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unkown gamma structure&#39;</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos">84</span></a>    <span class="k">return</span> <span class="n">g</span>
+</span></pre></div>
 
         </details>
 
@@ -175,17 +175,17 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">epsilon_tensor</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Rank-3 epsilon tensor</span>
-
-<span class="sd">    Based on https://codegolf.stackexchange.com/a/160375</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">))):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="epsilon_tensor-25"><a href="#epsilon_tensor-25"><span class="linenos">25</span></a><span class="k">def</span> <span class="nf">epsilon_tensor</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">):</span>
+</span><span id="epsilon_tensor-26"><a href="#epsilon_tensor-26"><span class="linenos">26</span></a>    <span class="sd">&quot;&quot;&quot;Rank-3 epsilon tensor</span>
+</span><span id="epsilon_tensor-27"><a href="#epsilon_tensor-27"><span class="linenos">27</span></a>
+</span><span id="epsilon_tensor-28"><a href="#epsilon_tensor-28"><span class="linenos">28</span></a><span class="sd">    Based on https://codegolf.stackexchange.com/a/160375</span>
+</span><span id="epsilon_tensor-29"><a href="#epsilon_tensor-29"><span class="linenos">29</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="epsilon_tensor-30"><a href="#epsilon_tensor-30"><span class="linenos">30</span></a>    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
+</span><span id="epsilon_tensor-31"><a href="#epsilon_tensor-31"><span class="linenos">31</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">))):</span>
+</span><span id="epsilon_tensor-32"><a href="#epsilon_tensor-32"><span class="linenos">32</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
+</span><span id="epsilon_tensor-33"><a href="#epsilon_tensor-33"><span class="linenos">33</span></a>
+</span><span id="epsilon_tensor-34"><a href="#epsilon_tensor-34"><span class="linenos">34</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
+</span></pre></div>
 
         </details>
 
@@ -206,17 +206,17 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">epsilon_tensor_rank4</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Rank-4 epsilon tensor</span>
-
-<span class="sd">    Extension of https://codegolf.stackexchange.com/a/160375</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">o</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">/</span> <span class="mi">12</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="epsilon_tensor_rank4-37"><a href="#epsilon_tensor_rank4-37"><span class="linenos">37</span></a><span class="k">def</span> <span class="nf">epsilon_tensor_rank4</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">):</span>
+</span><span id="epsilon_tensor_rank4-38"><a href="#epsilon_tensor_rank4-38"><span class="linenos">38</span></a>    <span class="sd">&quot;&quot;&quot;Rank-4 epsilon tensor</span>
+</span><span id="epsilon_tensor_rank4-39"><a href="#epsilon_tensor_rank4-39"><span class="linenos">39</span></a>
+</span><span id="epsilon_tensor_rank4-40"><a href="#epsilon_tensor_rank4-40"><span class="linenos">40</span></a><span class="sd">    Extension of https://codegolf.stackexchange.com/a/160375</span>
+</span><span id="epsilon_tensor_rank4-41"><a href="#epsilon_tensor_rank4-41"><span class="linenos">41</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="epsilon_tensor_rank4-42"><a href="#epsilon_tensor_rank4-42"><span class="linenos">42</span></a>    <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span>
+</span><span id="epsilon_tensor_rank4-43"><a href="#epsilon_tensor_rank4-43"><span class="linenos">43</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))):</span>
+</span><span id="epsilon_tensor_rank4-44"><a href="#epsilon_tensor_rank4-44"><span class="linenos">44</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unexpected input&quot;</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
+</span><span id="epsilon_tensor_rank4-45"><a href="#epsilon_tensor_rank4-45"><span class="linenos">45</span></a>
+</span><span id="epsilon_tensor_rank4-46"><a href="#epsilon_tensor_rank4-46"><span class="linenos">46</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">o</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">/</span> <span class="mi">12</span>
+</span></pre></div>
 
         </details>
 
@@ -237,44 +237,44 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">Grid_gamma</span><span class="p">(</span><span class="n">gamma_tag</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Returns gamma matrix in Grid labeling.&quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Identity&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">identity</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaX&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaY&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZ&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaXGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaYGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaTGamma5&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXZ&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unkown gamma structure&#39;</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">g</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Grid_gamma-49"><a href="#Grid_gamma-49"><span class="linenos">49</span></a><span class="k">def</span> <span class="nf">Grid_gamma</span><span class="p">(</span><span class="n">gamma_tag</span><span class="p">):</span>
+</span><span id="Grid_gamma-50"><a href="#Grid_gamma-50"><span class="linenos">50</span></a>    <span class="sd">&quot;&quot;&quot;Returns gamma matrix in Grid labeling.&quot;&quot;&quot;</span>
+</span><span id="Grid_gamma-51"><a href="#Grid_gamma-51"><span class="linenos">51</span></a>    <span class="k">if</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Identity&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-52"><a href="#Grid_gamma-52"><span class="linenos">52</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">identity</span>
+</span><span id="Grid_gamma-53"><a href="#Grid_gamma-53"><span class="linenos">53</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-54"><a href="#Grid_gamma-54"><span class="linenos">54</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma5</span>
+</span><span id="Grid_gamma-55"><a href="#Grid_gamma-55"><span class="linenos">55</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaX&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-56"><a href="#Grid_gamma-56"><span class="linenos">56</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Grid_gamma-57"><a href="#Grid_gamma-57"><span class="linenos">57</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaY&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-58"><a href="#Grid_gamma-58"><span class="linenos">58</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="Grid_gamma-59"><a href="#Grid_gamma-59"><span class="linenos">59</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZ&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-60"><a href="#Grid_gamma-60"><span class="linenos">60</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="Grid_gamma-61"><a href="#Grid_gamma-61"><span class="linenos">61</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaT&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-62"><a href="#Grid_gamma-62"><span class="linenos">62</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span>
+</span><span id="Grid_gamma-63"><a href="#Grid_gamma-63"><span class="linenos">63</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaXGamma5&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-64"><a href="#Grid_gamma-64"><span class="linenos">64</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="Grid_gamma-65"><a href="#Grid_gamma-65"><span class="linenos">65</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaYGamma5&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-66"><a href="#Grid_gamma-66"><span class="linenos">66</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="Grid_gamma-67"><a href="#Grid_gamma-67"><span class="linenos">67</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaZGamma5&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-68"><a href="#Grid_gamma-68"><span class="linenos">68</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="Grid_gamma-69"><a href="#Grid_gamma-69"><span class="linenos">69</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;GammaTGamma5&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-70"><a href="#Grid_gamma-70"><span class="linenos">70</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma5</span>
+</span><span id="Grid_gamma-71"><a href="#Grid_gamma-71"><span class="linenos">71</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-72"><a href="#Grid_gamma-72"><span class="linenos">72</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="Grid_gamma-73"><a href="#Grid_gamma-73"><span class="linenos">73</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-74"><a href="#Grid_gamma-74"><span class="linenos">74</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="Grid_gamma-75"><a href="#Grid_gamma-75"><span class="linenos">75</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaXZ&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-76"><a href="#Grid_gamma-76"><span class="linenos">76</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="Grid_gamma-77"><a href="#Grid_gamma-77"><span class="linenos">77</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYT&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-78"><a href="#Grid_gamma-78"><span class="linenos">78</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Grid_gamma-79"><a href="#Grid_gamma-79"><span class="linenos">79</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-80"><a href="#Grid_gamma-80"><span class="linenos">80</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Grid_gamma-81"><a href="#Grid_gamma-81"><span class="linenos">81</span></a>    <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">:</span>
+</span><span id="Grid_gamma-82"><a href="#Grid_gamma-82"><span class="linenos">82</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
+</span><span id="Grid_gamma-83"><a href="#Grid_gamma-83"><span class="linenos">83</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="Grid_gamma-84"><a href="#Grid_gamma-84"><span class="linenos">84</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unkown gamma structure&#39;</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
+</span><span id="Grid_gamma-85"><a href="#Grid_gamma-85"><span class="linenos">85</span></a>    <span class="k">return</span> <span class="n">g</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/fits.html b/docs/pyerrors/fits.html
index 0fae9f40..4e746e47 100644
--- a/docs/pyerrors/fits.html
+++ b/docs/pyerrors/fits.html
@@ -3,14 +3,14 @@
 <head>
     <meta charset="utf-8">
     <meta name="viewport" content="width=device-width, initial-scale=1">
-    <meta name="generator" content="pdoc 11.0.0"/>
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     <title>pyerrors.fits API documentation</title>
 
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@@ -84,7 +84,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
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@@ -99,728 +99,728 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">gc</span>
-<span class="kn">from</span> <span class="nn">collections.abc</span> <span class="kn">import</span> <span class="n">Sequence</span>
-<span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>
-<span class="kn">import</span> <span class="nn">scipy.optimize</span>
-<span class="kn">import</span> <span class="nn">scipy.stats</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">gridspec</span>
-<span class="kn">from</span> <span class="nn">scipy.odr</span> <span class="kn">import</span> <span class="n">ODR</span><span class="p">,</span> <span class="n">Model</span><span class="p">,</span> <span class="n">RealData</span>
-<span class="kn">from</span> <span class="nn">scipy.stats</span> <span class="kn">import</span> <span class="n">chi2</span>
-<span class="kn">import</span> <span class="nn">iminuit</span>
-<span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">jacobian</span>
-<span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">elementwise_grad</span> <span class="k">as</span> <span class="n">egrad</span>
-<span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">derived_observable</span><span class="p">,</span> <span class="n">covariance</span><span class="p">,</span> <span class="n">cov_Obs</span>
-
-
-<span class="k">class</span> <span class="nc">Fit_result</span><span class="p">(</span><span class="n">Sequence</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Represents fit results.</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    fit_parameters : list</span>
-<span class="sd">        results for the individual fit parameters,</span>
-<span class="sd">        also accessible via indices.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
-
-    <span class="k">def</span> <span class="fm">__len__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Apply the gamma method to all fit parameters&quot;&quot;&quot;</span>
-        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">]</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">my_str</span> <span class="o">=</span> <span class="s1">&#39;Goodness of fit:</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_dof&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/d.o.f. = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;residual_variance&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;residual variance = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">residual_variance</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_expected_chisquare&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/</span><span class="se">\u03C7\u00b2</span><span class="s1">exp  = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;p_value&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;p-value   = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">p_value</span><span class="si">:</span><span class="s1">2.4f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;Fit parameters:</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">for</span> <span class="n">i_par</span><span class="p">,</span> <span class="n">par</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i_par</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">par</span><span class="p">)</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">))</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">return</span> <span class="n">my_str</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">m</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">len</span><span class="p">,</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">keys</span><span class="p">())))</span> <span class="o">+</span> <span class="mi">1</span>
-        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">key</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="n">m</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="nb">repr</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">())])</span>
-
-
-<span class="k">def</span> <span class="nf">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x).</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    x : list</span>
-<span class="sd">        list of floats.</span>
-<span class="sd">    y : list</span>
-<span class="sd">        list of Obs.</span>
-<span class="sd">    func : object</span>
-<span class="sd">        fit function, has to be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        import autograd.numpy as anp</span>
-
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        For multiple x values func can be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            (x1, x2) = x</span>
-<span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
-<span class="sd">        will not work.</span>
-<span class="sd">    priors : list, optional</span>
-<span class="sd">        priors has to be a list with an entry for every parameter in the fit. The entries can either be</span>
-<span class="sd">        Obs (e.g. results from a previous fit) or strings containing a value and an error formatted like</span>
-<span class="sd">        0.548(23), 500(40) or 0.5(0.4)</span>
-<span class="sd">    silent : bool, optional</span>
-<span class="sd">        If true all output to the console is omitted (default False).</span>
-<span class="sd">    initial_guess : list</span>
-<span class="sd">        can provide an initial guess for the input parameters. Relevant for</span>
-<span class="sd">        non-linear fits with many parameters.</span>
-<span class="sd">    method : str, optional</span>
-<span class="sd">        can be used to choose an alternative method for the minimization of chisquare.</span>
-<span class="sd">        The possible methods are the ones which can be used for scipy.optimize.minimize and</span>
-<span class="sd">        migrad of iminuit. If no method is specified, Levenberg-Marquard is used.</span>
-<span class="sd">        Reliable alternatives are migrad, Powell and Nelder-Mead.</span>
-<span class="sd">    correlated_fit : bool</span>
-<span class="sd">        If True, use the full inverse covariance matrix in the definition of the chisquare cost function.</span>
-<span class="sd">        For details about how the covariance matrix is estimated see `pyerrors.obs.covariance`.</span>
-<span class="sd">        In practice the correlation matrix is Cholesky decomposed and inverted (instead of the covariance matrix).</span>
-<span class="sd">        This procedure should be numerically more stable as the correlation matrix is typically better conditioned (Jacobi preconditioning).</span>
-<span class="sd">        At the moment this option only works for `prior==None` and when no `method` is given.</span>
-<span class="sd">    expected_chisquare : bool</span>
-<span class="sd">        If True estimates the expected chisquare which is</span>
-<span class="sd">        corrected by effects caused by correlated input data (default False).</span>
-<span class="sd">    resplot : bool</span>
-<span class="sd">        If True, a plot which displays fit, data and residuals is generated (default False).</span>
-<span class="sd">    qqplot : bool</span>
-<span class="sd">        If True, a quantile-quantile plot of the fit result is generated (default False).</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-    <span class="k">if</span> <span class="n">priors</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">_prior_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">_standard_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x) and returns a list of Obs corresponding to the fit parameters.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    x : list</span>
-<span class="sd">        list of Obs, or a tuple of lists of Obs</span>
-<span class="sd">    y : list</span>
-<span class="sd">        list of Obs. The dvalues of the Obs are used as x- and yerror for the fit.</span>
-<span class="sd">    func : object</span>
-<span class="sd">        func has to be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        import autograd.numpy as anp</span>
-
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        For multiple x values func can be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            (x1, x2) = x</span>
-<span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
-<span class="sd">        will not work.</span>
-<span class="sd">    silent : bool, optional</span>
-<span class="sd">        If true all output to the console is omitted (default False).</span>
-<span class="sd">    initial_guess : list</span>
-<span class="sd">        can provide an initial guess for the input parameters. Relevant for non-linear</span>
-<span class="sd">        fits with many parameters.</span>
-<span class="sd">    expected_chisquare : bool</span>
-<span class="sd">        If true prints the expected chisquare which is</span>
-<span class="sd">        corrected by effects caused by correlated input data.</span>
-<span class="sd">        This can take a while as the full correlation matrix</span>
-<span class="sd">        has to be calculated (default False).</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    Based on the orthogonal distance regression module of scipy</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-
-    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
-
-    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-
-    <span class="n">x_shape</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
-
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">25</span><span class="p">):</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="n">x</span><span class="o">.</span><span class="n">T</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="k">pass</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">break</span>
-
-    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
-
-    <span class="n">x_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
-    <span class="n">dx_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
-    <span class="n">y_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-    <span class="n">dy_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dx_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No x errors available, run the gamma method first.&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">),</span> <span class="n">n_parms</span><span class="p">))</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">n_parms</span>
-
-    <span class="n">data</span> <span class="o">=</span> <span class="n">RealData</span><span class="p">(</span><span class="n">x_f</span><span class="p">,</span> <span class="n">y_f</span><span class="p">,</span> <span class="n">sx</span><span class="o">=</span><span class="n">dx_f</span><span class="p">,</span> <span class="n">sy</span><span class="o">=</span><span class="n">dy_f</span><span class="p">)</span>
-    <span class="n">model</span> <span class="o">=</span> <span class="n">Model</span><span class="p">(</span><span class="n">func</span><span class="p">)</span>
-    <span class="n">odr</span> <span class="o">=</span> <span class="n">ODR</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">model</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">partol</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span>
-    <span class="n">odr</span><span class="o">.</span><span class="n">set_job</span><span class="p">(</span><span class="n">fit_type</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">deriv</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-    <span class="n">out</span> <span class="o">=</span> <span class="n">odr</span><span class="o">.</span><span class="n">run</span><span class="p">()</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">res_var</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="s1">&#39;ODR&#39;</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">stopreason</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">xplus</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method: ODR&#39;</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="o">*</span><span class="n">out</span><span class="o">.</span><span class="n">stopreason</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Residual variance:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">out</span><span class="o">.</span><span class="n">info</span> <span class="o">&gt;</span> <span class="mi">3</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
-
-    <span class="n">m</span> <span class="o">=</span> <span class="n">x_f</span><span class="o">.</span><span class="n">size</span>
-
-    <span class="k">def</span> <span class="nf">odr_chisquare</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;expected_chisquare&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">W</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">dy_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">dx_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">cov</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
-
-        <span class="n">number_of_x_parameters</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">m</span> <span class="o">/</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-
-        <span class="n">old_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">)</span>
-        <span class="n">fused_row1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">old_jac</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">)]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)))</span>
-        <span class="n">fused_row2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="p">))(</span><span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">number_of_x_parameters</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])))</span>
-        <span class="n">new_jac</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fused_row1</span><span class="p">,</span> <span class="n">fused_row2</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-
-        <span class="n">A</span> <span class="o">=</span> <span class="n">W</span> <span class="o">@</span> <span class="n">new_jac</span>
-        <span class="n">P_phi</span> <span class="o">=</span> <span class="n">A</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">A</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">A</span><span class="p">)</span> <span class="o">@</span> <span class="n">A</span><span class="o">.</span><span class="n">T</span>
-        <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">trace</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">P_phi</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">-</span> <span class="n">P_phi</span><span class="p">)</span> <span class="o">@</span> <span class="n">W</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">W</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">expected_chisquare</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Negative expected_chisquare.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-            <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">expected_chisquare</span><span class="p">)</span>
-        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span> <span class="o">/</span> <span class="n">expected_chisquare</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/expected_chisquare:&#39;</span><span class="p">,</span>
-                  <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="p">)</span>
-
-    <span class="n">fitp</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
-    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within fit functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
-
-    <span class="k">def</span> <span class="nf">odr_chisquare_compact_x</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">)</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="n">jac_jac_x</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_x</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">x_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
-
-    <span class="n">deriv_x</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_x</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
-
-    <span class="k">def</span> <span class="nf">odr_chisquare_compact_y</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="n">jac_jac_y</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_y</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">y_f</span><span class="p">)))</span>
-
-    <span class="n">deriv_y</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_y</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">my_var</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">my_var</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv_x</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">deriv_y</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
-    <span class="n">output</span><span class="o">.</span><span class="n">dof</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span>
-    <span class="n">output</span><span class="o">.</span><span class="n">p_value</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">chi2</span><span class="o">.</span><span class="n">cdf</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">dof</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">output</span>
-
-
-<span class="k">def</span> <span class="nf">_prior_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
-
-    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
-
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="mi">0</span><span class="p">)</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="k">pass</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">break</span>
-
-    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
-
-    <span class="k">if</span> <span class="n">n_parms</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">priors</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Priors does not have the correct length.&#39;</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">extract_val_and_dval</span><span class="p">(</span><span class="n">string</span><span class="p">):</span>
-        <span class="n">split_string</span> <span class="o">=</span> <span class="n">string</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="s1">&#39;.&#39;</span> <span class="ow">in</span> <span class="n">split_string</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">and</span> <span class="s1">&#39;.&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">split_string</span><span class="p">[</span><span class="mi">1</span><span class="p">][:</span><span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
-            <span class="n">factor</span> <span class="o">=</span> <span class="mi">10</span> <span class="o">**</span> <span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">split_string</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">partition</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">factor</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">split_string</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="nb">float</span><span class="p">(</span><span class="n">split_string</span><span class="p">[</span><span class="mi">1</span><span class="p">][:</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="n">factor</span>
-
-    <span class="n">loc_priors</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i_n</span><span class="p">,</span> <span class="n">i_prior</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">priors</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">i_prior</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="n">loc_priors</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">i_prior</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">loc_val</span><span class="p">,</span> <span class="n">loc_dval</span> <span class="o">=</span> <span class="n">extract_val_and_dval</span><span class="p">(</span><span class="n">i_prior</span><span class="p">)</span>
-            <span class="n">loc_priors</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cov_Obs</span><span class="p">(</span><span class="n">loc_val</span><span class="p">,</span> <span class="n">loc_dval</span> <span class="o">**</span> <span class="mi">2</span><span class="p">,</span> <span class="s1">&#39;#prior&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i_n</span><span class="p">)</span> <span class="o">+</span> <span class="sa">f</span><span class="s2">&quot;_</span><span class="si">{</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randint</span><span class="p">(</span><span class="mi">2147483647</span><span class="p">)</span><span class="si">:</span><span class="s2">010d</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">))</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">priors</span> <span class="o">=</span> <span class="n">loc_priors</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
-
-    <span class="n">y_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
-    <span class="n">dy_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
-
-    <span class="n">p_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">loc_priors</span><span class="p">]</span>
-    <span class="n">dp_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">loc_priors</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dp_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No prior errors available, run the gamma method first.&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length.&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="n">p_f</span>
-
-    <span class="k">def</span> <span class="nf">chisqfunc</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">p_f</span> <span class="o">-</span> <span class="n">p</span><span class="p">)</span> <span class="o">/</span> <span class="n">dp_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method: migrad&#39;</span><span class="p">)</span>
-
-    <span class="n">m</span> <span class="o">=</span> <span class="n">iminuit</span><span class="o">.</span><span class="n">Minuit</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">,</span> <span class="n">x0</span><span class="p">)</span>
-    <span class="n">m</span><span class="o">.</span><span class="n">errordef</span> <span class="o">=</span> <span class="mi">1</span>
-    <span class="n">m</span><span class="o">.</span><span class="n">print_level</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="k">if</span> <span class="s1">&#39;tol&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">m</span><span class="o">.</span><span class="n">tol</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tol&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">m</span><span class="o">.</span><span class="n">tol</span> <span class="o">=</span> <span class="mf">1e-4</span>
-    <span class="n">m</span><span class="o">.</span><span class="n">migrad</span><span class="p">()</span>
-    <span class="n">params</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">m</span><span class="o">.</span><span class="n">values</span><span class="p">)</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">fval</span> <span class="o">/</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="s1">&#39;migrad&#39;</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/d.o.f.:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">m</span><span class="o">.</span><span class="n">fmin</span><span class="o">.</span><span class="n">is_valid</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
-
-    <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">))(</span><span class="n">params</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">chisqfunc_compact</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">):]</span> <span class="o">-</span> <span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">])</span> <span class="o">/</span> <span class="n">dp_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="n">jac_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc_compact</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">params</span><span class="p">,</span> <span class="n">y_f</span><span class="p">,</span> <span class="n">p_f</span><span class="p">)))</span>
-
-    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">:]</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">params</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">)</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">loc_priors</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
-    <span class="n">output</span><span class="o">.</span><span class="n">chisquare</span> <span class="o">=</span> <span class="n">chisqfunc</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">params</span><span class="p">))</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;resplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;qqplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">output</span>
-
-
-<span class="k">def</span> <span class="nf">_standard_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-
-    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
-
-    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">y</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;x and y input have to have the same length&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">2</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown format for x values&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
-
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">25</span><span class="p">):</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="n">x</span><span class="o">.</span><span class="n">T</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="k">pass</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">break</span>
-
-    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
-
-    <span class="n">y_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
-    <span class="n">dy_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">),</span> <span class="n">n_parms</span><span class="p">))</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="p">[</span><span class="mf">0.1</span><span class="p">]</span> <span class="o">*</span> <span class="n">n_parms</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">corr</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">correlation</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="n">covdiag</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">))</span>
-        <span class="n">condn</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cond</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">condn</span> <span class="o">&gt;</span> <span class="mf">0.1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Cannot invert correlation matrix as its condition number exceeds machine precision (</span><span class="si">{</span><span class="n">condn</span><span class="si">:</span><span class="s2">1.2e</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">condn</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">):</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlation matrix may be ill-conditioned, condition number: {</span><span class="si">%1.2e</span><span class="s2">}&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">condn</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-        <span class="n">chol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
-        <span class="n">chol_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">chol</span><span class="p">)</span>
-        <span class="n">chol_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="n">covdiag</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">chisqfunc</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
-            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="p">(</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">chisq</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">def</span> <span class="nf">chisqfunc</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
-            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;method&#39;</span><span class="p">,</span> <span class="s1">&#39;Levenberg-Marquardt&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">method</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">!=</span> <span class="s1">&#39;Levenberg-Marquardt&#39;</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">==</span> <span class="s1">&#39;migrad&#39;</span><span class="p">:</span>
-            <span class="n">fit_result</span> <span class="o">=</span> <span class="n">iminuit</span><span class="o">.</span><span class="n">minimize</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">tol</span><span class="o">=</span><span class="mf">1e-4</span><span class="p">)</span>  <span class="c1"># Stopping criterion 0.002 * tol * errordef</span>
-            <span class="n">output</span><span class="o">.</span><span class="n">iterations</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">nfev</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">fit_result</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">minimize</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;method&#39;</span><span class="p">),</span> <span class="n">tol</span><span class="o">=</span><span class="mf">1e-12</span><span class="p">)</span>
-            <span class="n">output</span><span class="o">.</span><span class="n">iterations</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">nit</span>
-
-        <span class="n">chisquare</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">fun</span>
-
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="k">def</span> <span class="nf">chisqfunc_residuals</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
-                <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-                <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="p">(</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">))</span>
-                <span class="k">return</span> <span class="n">chisq</span>
-
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">def</span> <span class="nf">chisqfunc_residuals</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
-                <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-                <span class="n">chisq</span> <span class="o">=</span> <span class="p">((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span>
-                <span class="k">return</span> <span class="n">chisq</span>
-
-        <span class="n">fit_result</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">least_squares</span><span class="p">(</span><span class="n">chisqfunc_residuals</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s1">&#39;lm&#39;</span><span class="p">,</span> <span class="n">ftol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">,</span> <span class="n">gtol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">,</span> <span class="n">xtol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">)</span>
-
-        <span class="n">chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">fun</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-
-        <span class="n">output</span><span class="o">.</span><span class="n">iterations</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">nfev</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span> <span class="o">=</span> <span class="n">chisquare</span> <span class="o">/</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="s1">&#39;nan&#39;</span><span class="p">)</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">message</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">message</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/d.o.f.:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;expected_chisquare&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="n">W</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">))</span>
-            <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
-            <span class="n">A</span> <span class="o">=</span> <span class="n">W</span> <span class="o">@</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">x</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-            <span class="n">P_phi</span> <span class="o">=</span> <span class="n">A</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">A</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">A</span><span class="p">)</span> <span class="o">@</span> <span class="n">A</span><span class="o">.</span><span class="n">T</span>
-            <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">trace</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="n">P_phi</span><span class="p">)</span> <span class="o">@</span> <span class="n">W</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">W</span><span class="p">)</span>
-            <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span> <span class="o">=</span> <span class="n">chisquare</span> <span class="o">/</span> <span class="n">expected_chisquare</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/expected_chisquare:&#39;</span><span class="p">,</span>
-                      <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="p">)</span>
-
-    <span class="n">fitp</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">x</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">))(</span><span class="n">fitp</span><span class="p">))</span>
-    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within fit functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="k">def</span> <span class="nf">chisqfunc_compact</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
-            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">def</span> <span class="nf">chisqfunc_compact</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
-            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-            <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="n">jac_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc_compact</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">y_f</span><span class="p">)))</span>
-
-    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">:]</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">x</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">chisquare</span> <span class="o">=</span> <span class="n">chisqfunc</span><span class="p">(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">x</span><span class="p">)</span>
-    <span class="n">output</span><span class="o">.</span><span class="n">dof</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span>
-    <span class="n">output</span><span class="o">.</span><span class="n">p_value</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">chi2</span><span class="o">.</span><span class="n">cdf</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">chisquare</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">dof</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;resplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;qqplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">output</span>
-
-
-<span class="k">def</span> <span class="nf">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Performs a linear fit to y = n + m * x and returns two Obs n, m.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    x : list</span>
-<span class="sd">        Can either be a list of floats in which case no xerror is assumed, or</span>
-<span class="sd">        a list of Obs, where the dvalues of the Obs are used as xerror for the fit.</span>
-<span class="sd">    y : list</span>
-<span class="sd">        List of Obs, the dvalues of the Obs are used as yerror for the fit.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">f</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span>
-        <span class="n">y</span> <span class="o">=</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span>
-        <span class="k">return</span> <span class="n">y</span>
-
-    <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">):</span>
-        <span class="n">out</span> <span class="o">=</span> <span class="n">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
-    <span class="k">elif</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">int</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-        <span class="n">out</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unsupported types for x&#39;</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">p</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Generates a quantile-quantile plot of the fit result which can be used to</span>
-<span class="sd">       check if the residuals of the fit are gaussian distributed.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">residuals</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i_x</span><span class="p">,</span> <span class="n">i_y</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">):</span>
-        <span class="n">residuals</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">i_y</span> <span class="o">-</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">i_x</span><span class="p">))</span> <span class="o">/</span> <span class="n">i_y</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span>
-    <span class="n">residuals</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">residuals</span><span class="p">)</span>
-    <span class="n">my_y</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">residuals</span><span class="p">]</span>
-    <span class="n">probplot</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">probplot</span><span class="p">(</span><span class="n">my_y</span><span class="p">)</span>
-    <span class="n">my_x</span> <span class="o">=</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">my_x</span><span class="p">,</span> <span class="n">my_y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">)</span>
-    <span class="n">fit_start</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">fit_stop</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">fit_start</span><span class="p">,</span> <span class="n">fit_stop</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">11</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Standard normal distribution&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">samples</span> <span class="o">+</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Least squares fit, r=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">],</span> <span class="mi">3</span><span class="p">)),</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
-
-    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;Theoretical quantiles&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Ordered Values&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-
-<span class="k">def</span> <span class="nf">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">fit_res</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Generates a plot which compares the fit to the data and displays the corresponding residuals&quot;&quot;&quot;</span>
-    <span class="n">sorted_x</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-    <span class="n">xstart</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="n">xstop</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
-    <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span> <span class="o">+</span> <span class="mf">0.01</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
-
-    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
-    <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
-    <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Data&#39;</span><span class="p">)</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Fit&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">ms</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-
-    <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-    <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">subplots_adjust</span><span class="p">(</span><span class="n">wspace</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-
-<span class="k">def</span> <span class="nf">error_band</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">beta</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Returns the error band for an array of sample values x, for given fit function func with optimized parameters beta.&quot;&quot;&quot;</span>
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">beta</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">cov</span> <span class="o">-</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1000</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not symmetric within floating point precision&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">deriv</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-        <span class="n">deriv</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">egrad</span><span class="p">(</span><span class="n">func</span><span class="p">)([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">beta</span><span class="p">],</span> <span class="n">item</span><span class="p">)))</span>
-
-    <span class="n">err</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-        <span class="n">err</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
-    <span class="n">err</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">err</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">err</span>
-
-
-<span class="k">def</span> <span class="nf">ks_test</span><span class="p">(</span><span class="n">objects</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Performs a Kolmogorov–Smirnov test for the p-values of all fit object.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    objects : list</span>
-<span class="sd">        List of fit results to include in the analysis (optional).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="n">objects</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">obs_list</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">obj</span> <span class="ow">in</span> <span class="n">gc</span><span class="o">.</span><span class="n">get_objects</span><span class="p">():</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">Fit_result</span><span class="p">):</span>
-                <span class="n">obs_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">obs_list</span> <span class="o">=</span> <span class="n">objects</span>
-
-    <span class="n">p_values</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">p_value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">]</span>
-
-    <span class="n">bins</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
-    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mf">1.001</span><span class="p">,</span> <span class="mf">0.001</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;p-value&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Cumulative probability&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; p-values&#39;</span><span class="p">)</span>
-
-    <span class="n">n</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">bins</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span>
-    <span class="n">Xs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">step</span><span class="p">(</span><span class="n">Xs</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
-    <span class="n">diffs</span> <span class="o">=</span> <span class="n">n</span> <span class="o">-</span> <span class="n">Xs</span>
-    <span class="n">loc_max_diff</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">diffs</span><span class="p">))</span>
-    <span class="n">loc</span> <span class="o">=</span> <span class="n">Xs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">annotate</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">xy</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span><span class="p">),</span> <span class="n">xytext</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span> <span class="o">+</span> <span class="n">diffs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]),</span> <span class="n">arrowprops</span><span class="o">=</span><span class="nb">dict</span><span class="p">(</span><span class="n">arrowstyle</span><span class="o">=</span><span class="s1">&#39;&lt;-&gt;&#39;</span><span class="p">,</span> <span class="n">shrinkA</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">shrinkB</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">kstest</span><span class="p">(</span><span class="n">p_values</span><span class="p">,</span> <span class="s1">&#39;uniform&#39;</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">gc</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">from</span> <span class="nn">collections.abc</span> <span class="kn">import</span> <span class="n">Sequence</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">import</span> <span class="nn">warnings</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="kn">import</span> <span class="nn">scipy.optimize</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="kn">import</span> <span class="nn">scipy.stats</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">gridspec</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="kn">from</span> <span class="nn">scipy.odr</span> <span class="kn">import</span> <span class="n">ODR</span><span class="p">,</span> <span class="n">Model</span><span class="p">,</span> <span class="n">RealData</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="kn">from</span> <span class="nn">scipy.stats</span> <span class="kn">import</span> <span class="n">chi2</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="kn">import</span> <span class="nn">iminuit</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">jacobian</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">elementwise_grad</span> <span class="k">as</span> <span class="n">egrad</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">derived_observable</span><span class="p">,</span> <span class="n">covariance</span><span class="p">,</span> <span class="n">cov_Obs</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="k">class</span> <span class="nc">Fit_result</span><span class="p">(</span><span class="n">Sequence</span><span class="p">):</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a>    <span class="sd">&quot;&quot;&quot;Represents fit results.</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd">    Attributes</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd">    ----------</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="sd">    fit_parameters : list</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="sd">        results for the individual fit parameters,</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="sd">        also accessible via indices.</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a>    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>    <span class="k">def</span> <span class="fm">__len__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>        <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">)</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>        <span class="sd">&quot;&quot;&quot;Apply the gamma method to all fit parameters&quot;&quot;&quot;</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">]</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a>        <span class="n">my_str</span> <span class="o">=</span> <span class="s1">&#39;Goodness of fit:</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_dof&#39;</span><span class="p">):</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/d.o.f. = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;residual_variance&#39;</span><span class="p">):</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;residual variance = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">residual_variance</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_expected_chisquare&#39;</span><span class="p">):</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/</span><span class="se">\u03C7\u00b2</span><span class="s1">exp  = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;p_value&#39;</span><span class="p">):</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;p-value   = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">p_value</span><span class="si">:</span><span class="s1">2.4f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>        <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;Fit parameters:</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>        <span class="k">for</span> <span class="n">i_par</span><span class="p">,</span> <span class="n">par</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">):</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i_par</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">par</span><span class="p">)</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">))</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>        <span class="k">return</span> <span class="n">my_str</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>        <span class="n">m</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">len</span><span class="p">,</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">keys</span><span class="p">())))</span> <span class="o">+</span> <span class="mi">1</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">key</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="n">m</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="nb">repr</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">())])</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a><span class="k">def</span> <span class="nf">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x).</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a><span class="sd">    Parameters</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a><span class="sd">    ----------</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a><span class="sd">    x : list</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a><span class="sd">        list of floats.</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a><span class="sd">    y : list</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a><span class="sd">        list of Obs.</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a><span class="sd">    func : object</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a><span class="sd">        fit function, has to be of the form</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a><span class="sd">        ```python</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a><span class="sd">        import autograd.numpy as anp</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a><span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a><span class="sd">        ```</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a><span class="sd">        For multiple x values func can be of the form</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a><span class="sd">        ```python</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a><span class="sd">            (x1, x2) = x</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a><span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a><span class="sd">        ```</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a><span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a><span class="sd">        will not work.</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a><span class="sd">    priors : list, optional</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a><span class="sd">        priors has to be a list with an entry for every parameter in the fit. The entries can either be</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a><span class="sd">        Obs (e.g. results from a previous fit) or strings containing a value and an error formatted like</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a><span class="sd">        0.548(23), 500(40) or 0.5(0.4)</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a><span class="sd">    silent : bool, optional</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a><span class="sd">        If true all output to the console is omitted (default False).</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a><span class="sd">    initial_guess : list</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a><span class="sd">        can provide an initial guess for the input parameters. Relevant for</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a><span class="sd">        non-linear fits with many parameters.</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a><span class="sd">    method : str, optional</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a><span class="sd">        can be used to choose an alternative method for the minimization of chisquare.</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a><span class="sd">        The possible methods are the ones which can be used for scipy.optimize.minimize and</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a><span class="sd">        migrad of iminuit. If no method is specified, Levenberg-Marquard is used.</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a><span class="sd">        Reliable alternatives are migrad, Powell and Nelder-Mead.</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a><span class="sd">    correlated_fit : bool</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a><span class="sd">        If True, use the full inverse covariance matrix in the definition of the chisquare cost function.</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a><span class="sd">        For details about how the covariance matrix is estimated see `pyerrors.obs.covariance`.</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a><span class="sd">        In practice the correlation matrix is Cholesky decomposed and inverted (instead of the covariance matrix).</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a><span class="sd">        This procedure should be numerically more stable as the correlation matrix is typically better conditioned (Jacobi preconditioning).</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a><span class="sd">        At the moment this option only works for `prior==None` and when no `method` is given.</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a><span class="sd">    expected_chisquare : bool</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a><span class="sd">        If True estimates the expected chisquare which is</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a><span class="sd">        corrected by effects caused by correlated input data (default False).</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a><span class="sd">    resplot : bool</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a><span class="sd">        If True, a plot which displays fit, data and residuals is generated (default False).</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a><span class="sd">    qqplot : bool</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a><span class="sd">        If True, a quantile-quantile plot of the fit result is generated (default False).</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>    <span class="k">if</span> <span class="n">priors</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>        <span class="k">return</span> <span class="n">_prior_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>        <span class="k">return</span> <span class="n">_standard_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a><span class="k">def</span> <span class="nf">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x) and returns a list of Obs corresponding to the fit parameters.</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a><span class="sd">    Parameters</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a><span class="sd">    ----------</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a><span class="sd">    x : list</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a><span class="sd">        list of Obs, or a tuple of lists of Obs</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a><span class="sd">    y : list</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a><span class="sd">        list of Obs. The dvalues of the Obs are used as x- and yerror for the fit.</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a><span class="sd">    func : object</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a><span class="sd">        func has to be of the form</span>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a><span class="sd">        ```python</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a><span class="sd">        import autograd.numpy as anp</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a><span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a><span class="sd">        ```</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a><span class="sd">        For multiple x values func can be of the form</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a><span class="sd">        ```python</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a><span class="sd">            (x1, x2) = x</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a><span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a><span class="sd">        ```</span>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a><span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a><span class="sd">        will not work.</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a><span class="sd">    silent : bool, optional</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a><span class="sd">        If true all output to the console is omitted (default False).</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a><span class="sd">    initial_guess : list</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a><span class="sd">        can provide an initial guess for the input parameters. Relevant for non-linear</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a><span class="sd">        fits with many parameters.</span>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a><span class="sd">    expected_chisquare : bool</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a><span class="sd">        If true prints the expected chisquare which is</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a><span class="sd">        corrected by effects caused by correlated input data.</span>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a><span class="sd">        This can take a while as the full correlation matrix</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a><span class="sd">        has to be calculated (default False).</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a><span class="sd">    Notes</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a><span class="sd">    -----</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a><span class="sd">    Based on the orthogonal distance regression module of scipy</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a>    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>    <span class="n">x_shape</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">25</span><span class="p">):</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a>        <span class="k">try</span><span class="p">:</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a>            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="n">x</span><span class="o">.</span><span class="n">T</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a>            <span class="k">pass</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a>            <span class="k">break</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a>    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a>    <span class="n">x_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a>    <span class="n">dx_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a>    <span class="n">y_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a>    <span class="n">dy_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dx_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No x errors available, run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a>    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">),</span> <span class="n">n_parms</span><span class="p">))</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">n_parms</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="n">RealData</span><span class="p">(</span><span class="n">x_f</span><span class="p">,</span> <span class="n">y_f</span><span class="p">,</span> <span class="n">sx</span><span class="o">=</span><span class="n">dx_f</span><span class="p">,</span> <span class="n">sy</span><span class="o">=</span><span class="n">dy_f</span><span class="p">)</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>    <span class="n">model</span> <span class="o">=</span> <span class="n">Model</span><span class="p">(</span><span class="n">func</span><span class="p">)</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a>    <span class="n">odr</span> <span class="o">=</span> <span class="n">ODR</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">model</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">partol</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a>    <span class="n">odr</span><span class="o">.</span><span class="n">set_job</span><span class="p">(</span><span class="n">fit_type</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">deriv</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>    <span class="n">out</span> <span class="o">=</span> <span class="n">odr</span><span class="o">.</span><span class="n">run</span><span class="p">()</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">res_var</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="s1">&#39;ODR&#39;</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">stopreason</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">xplus</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method: ODR&#39;</span><span class="p">)</span>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>        <span class="nb">print</span><span class="p">(</span><span class="o">*</span><span class="n">out</span><span class="o">.</span><span class="n">stopreason</span><span class="p">)</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Residual variance:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span><span class="p">)</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>    <span class="k">if</span> <span class="n">out</span><span class="o">.</span><span class="n">info</span> <span class="o">&gt;</span> <span class="mi">3</span><span class="p">:</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a>    <span class="n">m</span> <span class="o">=</span> <span class="n">x_f</span><span class="o">.</span><span class="n">size</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>    <span class="k">def</span> <span class="nf">odr_chisquare</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;expected_chisquare&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a>        <span class="n">W</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">dy_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">dx_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a>            <span class="n">cov</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a>            <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a>        <span class="n">number_of_x_parameters</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">m</span> <span class="o">/</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a>        <span class="n">old_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">)</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a>        <span class="n">fused_row1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">old_jac</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">)]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)))</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a>        <span class="n">fused_row2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="p">))(</span><span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">number_of_x_parameters</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])))</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a>        <span class="n">new_jac</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fused_row1</span><span class="p">,</span> <span class="n">fused_row2</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a>        <span class="n">A</span> <span class="o">=</span> <span class="n">W</span> <span class="o">@</span> <span class="n">new_jac</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a>        <span class="n">P_phi</span> <span class="o">=</span> <span class="n">A</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">A</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">A</span><span class="p">)</span> <span class="o">@</span> <span class="n">A</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a>        <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">trace</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">P_phi</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">-</span> <span class="n">P_phi</span><span class="p">)</span> <span class="o">@</span> <span class="n">W</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">W</span><span class="p">)</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a>        <span class="k">if</span> <span class="n">expected_chisquare</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Negative expected_chisquare.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a>            <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">expected_chisquare</span><span class="p">)</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a>        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span> <span class="o">/</span> <span class="n">expected_chisquare</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/expected_chisquare:&#39;</span><span class="p">,</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a>                  <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="p">)</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a>    <span class="n">fitp</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a>        <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a>    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within fit functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a>    <span class="k">def</span> <span class="nf">odr_chisquare_compact_x</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">)</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a>    <span class="n">jac_jac_x</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_x</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">x_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a>    <span class="n">deriv_x</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_x</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a>    <span class="k">def</span> <span class="nf">odr_chisquare_compact_y</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a>
+</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a>    <span class="n">jac_jac_y</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_y</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">y_f</span><span class="p">)))</span>
+</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a>
+</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a>    <span class="n">deriv_y</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_y</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
+</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a>
+</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">my_var</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">my_var</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv_x</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">deriv_y</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>
+</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
+</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a>
+</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
+</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">dof</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">p_value</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">chi2</span><span class="o">.</span><span class="n">cdf</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">dof</span><span class="p">)</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a>
+</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a>    <span class="k">return</span> <span class="n">output</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a>
+</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a>
+</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a><span class="k">def</span> <span class="nf">_prior_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a>    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
+</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a>
+</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
+</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a>
+</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a>
+</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a>        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a>
+</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a>        <span class="k">try</span><span class="p">:</span>
+</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a>            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="mi">0</span><span class="p">)</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a>        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a>            <span class="k">pass</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a>            <span class="k">break</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a>
+</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a>    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
+</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a>
+</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a>    <span class="k">if</span> <span class="n">n_parms</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">priors</span><span class="p">):</span>
+</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Priors does not have the correct length.&#39;</span><span class="p">)</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a>
+</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a>    <span class="k">def</span> <span class="nf">extract_val_and_dval</span><span class="p">(</span><span class="n">string</span><span class="p">):</span>
+</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a>        <span class="n">split_string</span> <span class="o">=</span> <span class="n">string</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a>        <span class="k">if</span> <span class="s1">&#39;.&#39;</span> <span class="ow">in</span> <span class="n">split_string</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">and</span> <span class="s1">&#39;.&#39;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">split_string</span><span class="p">[</span><span class="mi">1</span><span class="p">][:</span><span class="o">-</span><span class="mi">1</span><span class="p">]:</span>
+</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a>            <span class="n">factor</span> <span class="o">=</span> <span class="mi">10</span> <span class="o">**</span> <span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">split_string</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">partition</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">2</span><span class="p">])</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a>            <span class="n">factor</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a>        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">split_string</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="nb">float</span><span class="p">(</span><span class="n">split_string</span><span class="p">[</span><span class="mi">1</span><span class="p">][:</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="n">factor</span>
+</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a>
+</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a>    <span class="n">loc_priors</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a>    <span class="k">for</span> <span class="n">i_n</span><span class="p">,</span> <span class="n">i_prior</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">priors</span><span class="p">):</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">i_prior</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a>            <span class="n">loc_priors</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">i_prior</span><span class="p">)</span>
+</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a>            <span class="n">loc_val</span><span class="p">,</span> <span class="n">loc_dval</span> <span class="o">=</span> <span class="n">extract_val_and_dval</span><span class="p">(</span><span class="n">i_prior</span><span class="p">)</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a>            <span class="n">loc_priors</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cov_Obs</span><span class="p">(</span><span class="n">loc_val</span><span class="p">,</span> <span class="n">loc_dval</span> <span class="o">**</span> <span class="mi">2</span><span class="p">,</span> <span class="s1">&#39;#prior&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i_n</span><span class="p">)</span> <span class="o">+</span> <span class="sa">f</span><span class="s2">&quot;_</span><span class="si">{</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">randint</span><span class="p">(</span><span class="mi">2147483647</span><span class="p">)</span><span class="si">:</span><span class="s2">010d</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">))</span>
+</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>
+</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">priors</span> <span class="o">=</span> <span class="n">loc_priors</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a>
+</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a>
+</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a>    <span class="n">y_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a>    <span class="n">dy_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
+</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a>
+</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a>
+</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a>    <span class="n">p_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">loc_priors</span><span class="p">]</span>
+</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a>    <span class="n">dp_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">loc_priors</span><span class="p">]</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a>
+</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dp_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No prior errors available, run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a>
+</span><span id="L-357"><a href="#L-357"><span class="linenos">357</span></a>    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-358"><a href="#L-358"><span class="linenos">358</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
+</span><span id="L-359"><a href="#L-359"><span class="linenos">359</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
+</span><span id="L-360"><a href="#L-360"><span class="linenos">360</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length.&#39;</span><span class="p">)</span>
+</span><span id="L-361"><a href="#L-361"><span class="linenos">361</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-362"><a href="#L-362"><span class="linenos">362</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="n">p_f</span>
+</span><span id="L-363"><a href="#L-363"><span class="linenos">363</span></a>
+</span><span id="L-364"><a href="#L-364"><span class="linenos">364</span></a>    <span class="k">def</span> <span class="nf">chisqfunc</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
+</span><span id="L-365"><a href="#L-365"><span class="linenos">365</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-366"><a href="#L-366"><span class="linenos">366</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">p_f</span> <span class="o">-</span> <span class="n">p</span><span class="p">)</span> <span class="o">/</span> <span class="n">dp_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-367"><a href="#L-367"><span class="linenos">367</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-368"><a href="#L-368"><span class="linenos">368</span></a>
+</span><span id="L-369"><a href="#L-369"><span class="linenos">369</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-370"><a href="#L-370"><span class="linenos">370</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method: migrad&#39;</span><span class="p">)</span>
+</span><span id="L-371"><a href="#L-371"><span class="linenos">371</span></a>
+</span><span id="L-372"><a href="#L-372"><span class="linenos">372</span></a>    <span class="n">m</span> <span class="o">=</span> <span class="n">iminuit</span><span class="o">.</span><span class="n">Minuit</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">,</span> <span class="n">x0</span><span class="p">)</span>
+</span><span id="L-373"><a href="#L-373"><span class="linenos">373</span></a>    <span class="n">m</span><span class="o">.</span><span class="n">errordef</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-374"><a href="#L-374"><span class="linenos">374</span></a>    <span class="n">m</span><span class="o">.</span><span class="n">print_level</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-375"><a href="#L-375"><span class="linenos">375</span></a>    <span class="k">if</span> <span class="s1">&#39;tol&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-376"><a href="#L-376"><span class="linenos">376</span></a>        <span class="n">m</span><span class="o">.</span><span class="n">tol</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tol&#39;</span><span class="p">)</span>
+</span><span id="L-377"><a href="#L-377"><span class="linenos">377</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-378"><a href="#L-378"><span class="linenos">378</span></a>        <span class="n">m</span><span class="o">.</span><span class="n">tol</span> <span class="o">=</span> <span class="mf">1e-4</span>
+</span><span id="L-379"><a href="#L-379"><span class="linenos">379</span></a>    <span class="n">m</span><span class="o">.</span><span class="n">migrad</span><span class="p">()</span>
+</span><span id="L-380"><a href="#L-380"><span class="linenos">380</span></a>    <span class="n">params</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">m</span><span class="o">.</span><span class="n">values</span><span class="p">)</span>
+</span><span id="L-381"><a href="#L-381"><span class="linenos">381</span></a>
+</span><span id="L-382"><a href="#L-382"><span class="linenos">382</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span> <span class="o">=</span> <span class="n">m</span><span class="o">.</span><span class="n">fval</span> <span class="o">/</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-383"><a href="#L-383"><span class="linenos">383</span></a>
+</span><span id="L-384"><a href="#L-384"><span class="linenos">384</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="s1">&#39;migrad&#39;</span>
+</span><span id="L-385"><a href="#L-385"><span class="linenos">385</span></a>
+</span><span id="L-386"><a href="#L-386"><span class="linenos">386</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-387"><a href="#L-387"><span class="linenos">387</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/d.o.f.:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="p">)</span>
+</span><span id="L-388"><a href="#L-388"><span class="linenos">388</span></a>
+</span><span id="L-389"><a href="#L-389"><span class="linenos">389</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">m</span><span class="o">.</span><span class="n">fmin</span><span class="o">.</span><span class="n">is_valid</span><span class="p">:</span>
+</span><span id="L-390"><a href="#L-390"><span class="linenos">390</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
+</span><span id="L-391"><a href="#L-391"><span class="linenos">391</span></a>
+</span><span id="L-392"><a href="#L-392"><span class="linenos">392</span></a>    <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">))(</span><span class="n">params</span><span class="p">))</span>
+</span><span id="L-393"><a href="#L-393"><span class="linenos">393</span></a>
+</span><span id="L-394"><a href="#L-394"><span class="linenos">394</span></a>    <span class="k">def</span> <span class="nf">chisqfunc_compact</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-395"><a href="#L-395"><span class="linenos">395</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-396"><a href="#L-396"><span class="linenos">396</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">):]</span> <span class="o">-</span> <span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">])</span> <span class="o">/</span> <span class="n">dp_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-397"><a href="#L-397"><span class="linenos">397</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-398"><a href="#L-398"><span class="linenos">398</span></a>
+</span><span id="L-399"><a href="#L-399"><span class="linenos">399</span></a>    <span class="n">jac_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc_compact</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">params</span><span class="p">,</span> <span class="n">y_f</span><span class="p">,</span> <span class="n">p_f</span><span class="p">)))</span>
+</span><span id="L-400"><a href="#L-400"><span class="linenos">400</span></a>
+</span><span id="L-401"><a href="#L-401"><span class="linenos">401</span></a>    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">:]</span>
+</span><span id="L-402"><a href="#L-402"><span class="linenos">402</span></a>
+</span><span id="L-403"><a href="#L-403"><span class="linenos">403</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-404"><a href="#L-404"><span class="linenos">404</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
+</span><span id="L-405"><a href="#L-405"><span class="linenos">405</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">params</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">)</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">loc_priors</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
+</span><span id="L-406"><a href="#L-406"><span class="linenos">406</span></a>
+</span><span id="L-407"><a href="#L-407"><span class="linenos">407</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
+</span><span id="L-408"><a href="#L-408"><span class="linenos">408</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">chisquare</span> <span class="o">=</span> <span class="n">chisqfunc</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">params</span><span class="p">))</span>
+</span><span id="L-409"><a href="#L-409"><span class="linenos">409</span></a>
+</span><span id="L-410"><a href="#L-410"><span class="linenos">410</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;resplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-411"><a href="#L-411"><span class="linenos">411</span></a>        <span class="n">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
+</span><span id="L-412"><a href="#L-412"><span class="linenos">412</span></a>
+</span><span id="L-413"><a href="#L-413"><span class="linenos">413</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;qqplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-414"><a href="#L-414"><span class="linenos">414</span></a>        <span class="n">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
+</span><span id="L-415"><a href="#L-415"><span class="linenos">415</span></a>
+</span><span id="L-416"><a href="#L-416"><span class="linenos">416</span></a>    <span class="k">return</span> <span class="n">output</span>
+</span><span id="L-417"><a href="#L-417"><span class="linenos">417</span></a>
+</span><span id="L-418"><a href="#L-418"><span class="linenos">418</span></a>
+</span><span id="L-419"><a href="#L-419"><span class="linenos">419</span></a><span class="k">def</span> <span class="nf">_standard_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-420"><a href="#L-420"><span class="linenos">420</span></a>
+</span><span id="L-421"><a href="#L-421"><span class="linenos">421</span></a>    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
+</span><span id="L-422"><a href="#L-422"><span class="linenos">422</span></a>
+</span><span id="L-423"><a href="#L-423"><span class="linenos">423</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
+</span><span id="L-424"><a href="#L-424"><span class="linenos">424</span></a>
+</span><span id="L-425"><a href="#L-425"><span class="linenos">425</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-426"><a href="#L-426"><span class="linenos">426</span></a>
+</span><span id="L-427"><a href="#L-427"><span class="linenos">427</span></a>    <span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">y</span><span class="p">):</span>
+</span><span id="L-428"><a href="#L-428"><span class="linenos">428</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;x and y input have to have the same length&#39;</span><span class="p">)</span>
+</span><span id="L-429"><a href="#L-429"><span class="linenos">429</span></a>
+</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown format for x values&#39;</span><span class="p">)</span>
+</span><span id="L-432"><a href="#L-432"><span class="linenos">432</span></a>
+</span><span id="L-433"><a href="#L-433"><span class="linenos">433</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
+</span><span id="L-434"><a href="#L-434"><span class="linenos">434</span></a>        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
+</span><span id="L-435"><a href="#L-435"><span class="linenos">435</span></a>
+</span><span id="L-436"><a href="#L-436"><span class="linenos">436</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">25</span><span class="p">):</span>
+</span><span id="L-437"><a href="#L-437"><span class="linenos">437</span></a>        <span class="k">try</span><span class="p">:</span>
+</span><span id="L-438"><a href="#L-438"><span class="linenos">438</span></a>            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="n">x</span><span class="o">.</span><span class="n">T</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-439"><a href="#L-439"><span class="linenos">439</span></a>        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-440"><a href="#L-440"><span class="linenos">440</span></a>            <span class="k">pass</span>
+</span><span id="L-441"><a href="#L-441"><span class="linenos">441</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-442"><a href="#L-442"><span class="linenos">442</span></a>            <span class="k">break</span>
+</span><span id="L-443"><a href="#L-443"><span class="linenos">443</span></a>
+</span><span id="L-444"><a href="#L-444"><span class="linenos">444</span></a>    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
+</span><span id="L-445"><a href="#L-445"><span class="linenos">445</span></a>
+</span><span id="L-446"><a href="#L-446"><span class="linenos">446</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-447"><a href="#L-447"><span class="linenos">447</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-448"><a href="#L-448"><span class="linenos">448</span></a>
+</span><span id="L-449"><a href="#L-449"><span class="linenos">449</span></a>    <span class="n">y_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
+</span><span id="L-450"><a href="#L-450"><span class="linenos">450</span></a>    <span class="n">dy_f</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
+</span><span id="L-451"><a href="#L-451"><span class="linenos">451</span></a>
+</span><span id="L-452"><a href="#L-452"><span class="linenos">452</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="L-453"><a href="#L-453"><span class="linenos">453</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-454"><a href="#L-454"><span class="linenos">454</span></a>
+</span><span id="L-455"><a href="#L-455"><span class="linenos">455</span></a>    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-456"><a href="#L-456"><span class="linenos">456</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
+</span><span id="L-457"><a href="#L-457"><span class="linenos">457</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
+</span><span id="L-458"><a href="#L-458"><span class="linenos">458</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">),</span> <span class="n">n_parms</span><span class="p">))</span>
+</span><span id="L-459"><a href="#L-459"><span class="linenos">459</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-460"><a href="#L-460"><span class="linenos">460</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="p">[</span><span class="mf">0.1</span><span class="p">]</span> <span class="o">*</span> <span class="n">n_parms</span>
+</span><span id="L-461"><a href="#L-461"><span class="linenos">461</span></a>
+</span><span id="L-462"><a href="#L-462"><span class="linenos">462</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-463"><a href="#L-463"><span class="linenos">463</span></a>        <span class="n">corr</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">correlation</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-464"><a href="#L-464"><span class="linenos">464</span></a>        <span class="n">covdiag</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">))</span>
+</span><span id="L-465"><a href="#L-465"><span class="linenos">465</span></a>        <span class="n">condn</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cond</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
+</span><span id="L-466"><a href="#L-466"><span class="linenos">466</span></a>        <span class="k">if</span> <span class="n">condn</span> <span class="o">&gt;</span> <span class="mf">0.1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">:</span>
+</span><span id="L-467"><a href="#L-467"><span class="linenos">467</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Cannot invert correlation matrix as its condition number exceeds machine precision (</span><span class="si">{</span><span class="n">condn</span><span class="si">:</span><span class="s2">1.2e</span><span class="si">}</span><span class="s2">)&quot;</span><span class="p">)</span>
+</span><span id="L-468"><a href="#L-468"><span class="linenos">468</span></a>        <span class="k">if</span> <span class="n">condn</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">):</span>
+</span><span id="L-469"><a href="#L-469"><span class="linenos">469</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Correlation matrix may be ill-conditioned, condition number: {</span><span class="si">%1.2e</span><span class="s2">}&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">condn</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-470"><a href="#L-470"><span class="linenos">470</span></a>        <span class="n">chol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
+</span><span id="L-471"><a href="#L-471"><span class="linenos">471</span></a>        <span class="n">chol_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">(</span><span class="n">chol</span><span class="p">)</span>
+</span><span id="L-472"><a href="#L-472"><span class="linenos">472</span></a>        <span class="n">chol_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="n">covdiag</span><span class="p">)</span>
+</span><span id="L-473"><a href="#L-473"><span class="linenos">473</span></a>
+</span><span id="L-474"><a href="#L-474"><span class="linenos">474</span></a>        <span class="k">def</span> <span class="nf">chisqfunc</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
+</span><span id="L-475"><a href="#L-475"><span class="linenos">475</span></a>            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-476"><a href="#L-476"><span class="linenos">476</span></a>            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="p">(</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-477"><a href="#L-477"><span class="linenos">477</span></a>            <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-478"><a href="#L-478"><span class="linenos">478</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-479"><a href="#L-479"><span class="linenos">479</span></a>        <span class="k">def</span> <span class="nf">chisqfunc</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
+</span><span id="L-480"><a href="#L-480"><span class="linenos">480</span></a>            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a>            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a>            <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a>
+</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;method&#39;</span><span class="p">,</span> <span class="s1">&#39;Levenberg-Marquardt&#39;</span><span class="p">)</span>
+</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">method</span><span class="p">)</span>
+</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a>
+</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a>    <span class="k">if</span> <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">!=</span> <span class="s1">&#39;Levenberg-Marquardt&#39;</span><span class="p">:</span>
+</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a>        <span class="k">if</span> <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">==</span> <span class="s1">&#39;migrad&#39;</span><span class="p">:</span>
+</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a>            <span class="n">fit_result</span> <span class="o">=</span> <span class="n">iminuit</span><span class="o">.</span><span class="n">minimize</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">tol</span><span class="o">=</span><span class="mf">1e-4</span><span class="p">)</span>  <span class="c1"># Stopping criterion 0.002 * tol * errordef</span>
+</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a>            <span class="n">output</span><span class="o">.</span><span class="n">iterations</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">nfev</span>
+</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-493"><a href="#L-493"><span class="linenos">493</span></a>            <span class="n">fit_result</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">minimize</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;method&#39;</span><span class="p">),</span> <span class="n">tol</span><span class="o">=</span><span class="mf">1e-12</span><span class="p">)</span>
+</span><span id="L-494"><a href="#L-494"><span class="linenos">494</span></a>            <span class="n">output</span><span class="o">.</span><span class="n">iterations</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">nit</span>
+</span><span id="L-495"><a href="#L-495"><span class="linenos">495</span></a>
+</span><span id="L-496"><a href="#L-496"><span class="linenos">496</span></a>        <span class="n">chisquare</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">fun</span>
+</span><span id="L-497"><a href="#L-497"><span class="linenos">497</span></a>
+</span><span id="L-498"><a href="#L-498"><span class="linenos">498</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-499"><a href="#L-499"><span class="linenos">499</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-500"><a href="#L-500"><span class="linenos">500</span></a>            <span class="k">def</span> <span class="nf">chisqfunc_residuals</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
+</span><span id="L-501"><a href="#L-501"><span class="linenos">501</span></a>                <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-502"><a href="#L-502"><span class="linenos">502</span></a>                <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="p">(</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">))</span>
+</span><span id="L-503"><a href="#L-503"><span class="linenos">503</span></a>                <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-504"><a href="#L-504"><span class="linenos">504</span></a>
+</span><span id="L-505"><a href="#L-505"><span class="linenos">505</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-506"><a href="#L-506"><span class="linenos">506</span></a>            <span class="k">def</span> <span class="nf">chisqfunc_residuals</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
+</span><span id="L-507"><a href="#L-507"><span class="linenos">507</span></a>                <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-508"><a href="#L-508"><span class="linenos">508</span></a>                <span class="n">chisq</span> <span class="o">=</span> <span class="p">((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span>
+</span><span id="L-509"><a href="#L-509"><span class="linenos">509</span></a>                <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-510"><a href="#L-510"><span class="linenos">510</span></a>
+</span><span id="L-511"><a href="#L-511"><span class="linenos">511</span></a>        <span class="n">fit_result</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">least_squares</span><span class="p">(</span><span class="n">chisqfunc_residuals</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s1">&#39;lm&#39;</span><span class="p">,</span> <span class="n">ftol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">,</span> <span class="n">gtol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">,</span> <span class="n">xtol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">)</span>
+</span><span id="L-512"><a href="#L-512"><span class="linenos">512</span></a>
+</span><span id="L-513"><a href="#L-513"><span class="linenos">513</span></a>        <span class="n">chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">fun</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-514"><a href="#L-514"><span class="linenos">514</span></a>
+</span><span id="L-515"><a href="#L-515"><span class="linenos">515</span></a>        <span class="n">output</span><span class="o">.</span><span class="n">iterations</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">nfev</span>
+</span><span id="L-516"><a href="#L-516"><span class="linenos">516</span></a>
+</span><span id="L-517"><a href="#L-517"><span class="linenos">517</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">success</span><span class="p">:</span>
+</span><span id="L-518"><a href="#L-518"><span class="linenos">518</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
+</span><span id="L-519"><a href="#L-519"><span class="linenos">519</span></a>
+</span><span id="L-520"><a href="#L-520"><span class="linenos">520</span></a>    <span class="k">if</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-521"><a href="#L-521"><span class="linenos">521</span></a>        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span> <span class="o">=</span> <span class="n">chisquare</span> <span class="o">/</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span><span class="p">)</span>
+</span><span id="L-522"><a href="#L-522"><span class="linenos">522</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-523"><a href="#L-523"><span class="linenos">523</span></a>        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="s1">&#39;nan&#39;</span><span class="p">)</span>
+</span><span id="L-524"><a href="#L-524"><span class="linenos">524</span></a>
+</span><span id="L-525"><a href="#L-525"><span class="linenos">525</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">message</span>
+</span><span id="L-526"><a href="#L-526"><span class="linenos">526</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-527"><a href="#L-527"><span class="linenos">527</span></a>        <span class="nb">print</span><span class="p">(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">message</span><span class="p">)</span>
+</span><span id="L-528"><a href="#L-528"><span class="linenos">528</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/d.o.f.:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="p">)</span>
+</span><span id="L-529"><a href="#L-529"><span class="linenos">529</span></a>
+</span><span id="L-530"><a href="#L-530"><span class="linenos">530</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;expected_chisquare&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-531"><a href="#L-531"><span class="linenos">531</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-532"><a href="#L-532"><span class="linenos">532</span></a>            <span class="n">W</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">))</span>
+</span><span id="L-533"><a href="#L-533"><span class="linenos">533</span></a>            <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">y</span><span class="p">)</span>
+</span><span id="L-534"><a href="#L-534"><span class="linenos">534</span></a>            <span class="n">A</span> <span class="o">=</span> <span class="n">W</span> <span class="o">@</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">x</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-535"><a href="#L-535"><span class="linenos">535</span></a>            <span class="n">P_phi</span> <span class="o">=</span> <span class="n">A</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">A</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">A</span><span class="p">)</span> <span class="o">@</span> <span class="n">A</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-536"><a href="#L-536"><span class="linenos">536</span></a>            <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">trace</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="n">P_phi</span><span class="p">)</span> <span class="o">@</span> <span class="n">W</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">W</span><span class="p">)</span>
+</span><span id="L-537"><a href="#L-537"><span class="linenos">537</span></a>            <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span> <span class="o">=</span> <span class="n">chisquare</span> <span class="o">/</span> <span class="n">expected_chisquare</span>
+</span><span id="L-538"><a href="#L-538"><span class="linenos">538</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="L-539"><a href="#L-539"><span class="linenos">539</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/expected_chisquare:&#39;</span><span class="p">,</span>
+</span><span id="L-540"><a href="#L-540"><span class="linenos">540</span></a>                      <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="p">)</span>
+</span><span id="L-541"><a href="#L-541"><span class="linenos">541</span></a>
+</span><span id="L-542"><a href="#L-542"><span class="linenos">542</span></a>    <span class="n">fitp</span> <span class="o">=</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">x</span>
+</span><span id="L-543"><a href="#L-543"><span class="linenos">543</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="L-544"><a href="#L-544"><span class="linenos">544</span></a>        <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc</span><span class="p">))(</span><span class="n">fitp</span><span class="p">))</span>
+</span><span id="L-545"><a href="#L-545"><span class="linenos">545</span></a>    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
+</span><span id="L-546"><a href="#L-546"><span class="linenos">546</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within fit functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-547"><a href="#L-547"><span class="linenos">547</span></a>
+</span><span id="L-548"><a href="#L-548"><span class="linenos">548</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;correlated_fit&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-549"><a href="#L-549"><span class="linenos">549</span></a>        <span class="k">def</span> <span class="nf">chisqfunc_compact</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-550"><a href="#L-550"><span class="linenos">550</span></a>            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-551"><a href="#L-551"><span class="linenos">551</span></a>            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">chol_inv</span><span class="p">,</span> <span class="p">(</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-552"><a href="#L-552"><span class="linenos">552</span></a>            <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-553"><a href="#L-553"><span class="linenos">553</span></a>
+</span><span id="L-554"><a href="#L-554"><span class="linenos">554</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-555"><a href="#L-555"><span class="linenos">555</span></a>        <span class="k">def</span> <span class="nf">chisqfunc_compact</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-556"><a href="#L-556"><span class="linenos">556</span></a>            <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-557"><a href="#L-557"><span class="linenos">557</span></a>            <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-558"><a href="#L-558"><span class="linenos">558</span></a>            <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="L-559"><a href="#L-559"><span class="linenos">559</span></a>
+</span><span id="L-560"><a href="#L-560"><span class="linenos">560</span></a>    <span class="n">jac_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">chisqfunc_compact</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">y_f</span><span class="p">)))</span>
+</span><span id="L-561"><a href="#L-561"><span class="linenos">561</span></a>
+</span><span id="L-562"><a href="#L-562"><span class="linenos">562</span></a>    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">:]</span>
+</span><span id="L-563"><a href="#L-563"><span class="linenos">563</span></a>
+</span><span id="L-564"><a href="#L-564"><span class="linenos">564</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-565"><a href="#L-565"><span class="linenos">565</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
+</span><span id="L-566"><a href="#L-566"><span class="linenos">566</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">y</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">fit_result</span><span class="o">.</span><span class="n">x</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
+</span><span id="L-567"><a href="#L-567"><span class="linenos">567</span></a>
+</span><span id="L-568"><a href="#L-568"><span class="linenos">568</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
+</span><span id="L-569"><a href="#L-569"><span class="linenos">569</span></a>
+</span><span id="L-570"><a href="#L-570"><span class="linenos">570</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">chisquare</span> <span class="o">=</span> <span class="n">chisqfunc</span><span class="p">(</span><span class="n">fit_result</span><span class="o">.</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-571"><a href="#L-571"><span class="linenos">571</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">dof</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span>
+</span><span id="L-572"><a href="#L-572"><span class="linenos">572</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">p_value</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">chi2</span><span class="o">.</span><span class="n">cdf</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">chisquare</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">dof</span><span class="p">)</span>
+</span><span id="L-573"><a href="#L-573"><span class="linenos">573</span></a>
+</span><span id="L-574"><a href="#L-574"><span class="linenos">574</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;resplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-575"><a href="#L-575"><span class="linenos">575</span></a>        <span class="n">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
+</span><span id="L-576"><a href="#L-576"><span class="linenos">576</span></a>
+</span><span id="L-577"><a href="#L-577"><span class="linenos">577</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;qqplot&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-578"><a href="#L-578"><span class="linenos">578</span></a>        <span class="n">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">result</span><span class="p">)</span>
+</span><span id="L-579"><a href="#L-579"><span class="linenos">579</span></a>
+</span><span id="L-580"><a href="#L-580"><span class="linenos">580</span></a>    <span class="k">return</span> <span class="n">output</span>
+</span><span id="L-581"><a href="#L-581"><span class="linenos">581</span></a>
+</span><span id="L-582"><a href="#L-582"><span class="linenos">582</span></a>
+</span><span id="L-583"><a href="#L-583"><span class="linenos">583</span></a><span class="k">def</span> <span class="nf">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-584"><a href="#L-584"><span class="linenos">584</span></a>    <span class="sd">&quot;&quot;&quot;Performs a linear fit to y = n + m * x and returns two Obs n, m.</span>
+</span><span id="L-585"><a href="#L-585"><span class="linenos">585</span></a>
+</span><span id="L-586"><a href="#L-586"><span class="linenos">586</span></a><span class="sd">    Parameters</span>
+</span><span id="L-587"><a href="#L-587"><span class="linenos">587</span></a><span class="sd">    ----------</span>
+</span><span id="L-588"><a href="#L-588"><span class="linenos">588</span></a><span class="sd">    x : list</span>
+</span><span id="L-589"><a href="#L-589"><span class="linenos">589</span></a><span class="sd">        Can either be a list of floats in which case no xerror is assumed, or</span>
+</span><span id="L-590"><a href="#L-590"><span class="linenos">590</span></a><span class="sd">        a list of Obs, where the dvalues of the Obs are used as xerror for the fit.</span>
+</span><span id="L-591"><a href="#L-591"><span class="linenos">591</span></a><span class="sd">    y : list</span>
+</span><span id="L-592"><a href="#L-592"><span class="linenos">592</span></a><span class="sd">        List of Obs, the dvalues of the Obs are used as yerror for the fit.</span>
+</span><span id="L-593"><a href="#L-593"><span class="linenos">593</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-594"><a href="#L-594"><span class="linenos">594</span></a>
+</span><span id="L-595"><a href="#L-595"><span class="linenos">595</span></a>    <span class="k">def</span> <span class="nf">f</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span>
+</span><span id="L-596"><a href="#L-596"><span class="linenos">596</span></a>        <span class="n">y</span> <span class="o">=</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span>
+</span><span id="L-597"><a href="#L-597"><span class="linenos">597</span></a>        <span class="k">return</span> <span class="n">y</span>
+</span><span id="L-598"><a href="#L-598"><span class="linenos">598</span></a>
+</span><span id="L-599"><a href="#L-599"><span class="linenos">599</span></a>    <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">):</span>
+</span><span id="L-600"><a href="#L-600"><span class="linenos">600</span></a>        <span class="n">out</span> <span class="o">=</span> <span class="n">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-601"><a href="#L-601"><span class="linenos">601</span></a>        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
+</span><span id="L-602"><a href="#L-602"><span class="linenos">602</span></a>    <span class="k">elif</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">int</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-603"><a href="#L-603"><span class="linenos">603</span></a>        <span class="n">out</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-604"><a href="#L-604"><span class="linenos">604</span></a>        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
+</span><span id="L-605"><a href="#L-605"><span class="linenos">605</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-606"><a href="#L-606"><span class="linenos">606</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unsupported types for x&#39;</span><span class="p">)</span>
+</span><span id="L-607"><a href="#L-607"><span class="linenos">607</span></a>
+</span><span id="L-608"><a href="#L-608"><span class="linenos">608</span></a>
+</span><span id="L-609"><a href="#L-609"><span class="linenos">609</span></a><span class="k">def</span> <span class="nf">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">p</span><span class="p">):</span>
+</span><span id="L-610"><a href="#L-610"><span class="linenos">610</span></a>    <span class="sd">&quot;&quot;&quot;Generates a quantile-quantile plot of the fit result which can be used to</span>
+</span><span id="L-611"><a href="#L-611"><span class="linenos">611</span></a><span class="sd">       check if the residuals of the fit are gaussian distributed.</span>
+</span><span id="L-612"><a href="#L-612"><span class="linenos">612</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-613"><a href="#L-613"><span class="linenos">613</span></a>
+</span><span id="L-614"><a href="#L-614"><span class="linenos">614</span></a>    <span class="n">residuals</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-615"><a href="#L-615"><span class="linenos">615</span></a>    <span class="k">for</span> <span class="n">i_x</span><span class="p">,</span> <span class="n">i_y</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">):</span>
+</span><span id="L-616"><a href="#L-616"><span class="linenos">616</span></a>        <span class="n">residuals</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">i_y</span> <span class="o">-</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">i_x</span><span class="p">))</span> <span class="o">/</span> <span class="n">i_y</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span>
+</span><span id="L-617"><a href="#L-617"><span class="linenos">617</span></a>    <span class="n">residuals</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">residuals</span><span class="p">)</span>
+</span><span id="L-618"><a href="#L-618"><span class="linenos">618</span></a>    <span class="n">my_y</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">residuals</span><span class="p">]</span>
+</span><span id="L-619"><a href="#L-619"><span class="linenos">619</span></a>    <span class="n">probplot</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">probplot</span><span class="p">(</span><span class="n">my_y</span><span class="p">)</span>
+</span><span id="L-620"><a href="#L-620"><span class="linenos">620</span></a>    <span class="n">my_x</span> <span class="o">=</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-621"><a href="#L-621"><span class="linenos">621</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
+</span><span id="L-622"><a href="#L-622"><span class="linenos">622</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">my_x</span><span class="p">,</span> <span class="n">my_y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">)</span>
+</span><span id="L-623"><a href="#L-623"><span class="linenos">623</span></a>    <span class="n">fit_start</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-624"><a href="#L-624"><span class="linenos">624</span></a>    <span class="n">fit_stop</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-625"><a href="#L-625"><span class="linenos">625</span></a>    <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">fit_start</span><span class="p">,</span> <span class="n">fit_stop</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
+</span><span id="L-626"><a href="#L-626"><span class="linenos">626</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">11</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Standard normal distribution&#39;</span><span class="p">)</span>
+</span><span id="L-627"><a href="#L-627"><span class="linenos">627</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">samples</span> <span class="o">+</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Least squares fit, r=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">],</span> <span class="mi">3</span><span class="p">)),</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
+</span><span id="L-628"><a href="#L-628"><span class="linenos">628</span></a>
+</span><span id="L-629"><a href="#L-629"><span class="linenos">629</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;Theoretical quantiles&#39;</span><span class="p">)</span>
+</span><span id="L-630"><a href="#L-630"><span class="linenos">630</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Ordered Values&#39;</span><span class="p">)</span>
+</span><span id="L-631"><a href="#L-631"><span class="linenos">631</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="L-632"><a href="#L-632"><span class="linenos">632</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-633"><a href="#L-633"><span class="linenos">633</span></a>
+</span><span id="L-634"><a href="#L-634"><span class="linenos">634</span></a>
+</span><span id="L-635"><a href="#L-635"><span class="linenos">635</span></a><span class="k">def</span> <span class="nf">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">fit_res</span><span class="p">):</span>
+</span><span id="L-636"><a href="#L-636"><span class="linenos">636</span></a>    <span class="sd">&quot;&quot;&quot; Generates a plot which compares the fit to the data and displays the corresponding residuals&quot;&quot;&quot;</span>
+</span><span id="L-637"><a href="#L-637"><span class="linenos">637</span></a>    <span class="n">sorted_x</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="L-638"><a href="#L-638"><span class="linenos">638</span></a>    <span class="n">xstart</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-639"><a href="#L-639"><span class="linenos">639</span></a>    <span class="n">xstop</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
+</span><span id="L-640"><a href="#L-640"><span class="linenos">640</span></a>    <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span> <span class="o">+</span> <span class="mf">0.01</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
+</span><span id="L-641"><a href="#L-641"><span class="linenos">641</span></a>
+</span><span id="L-642"><a href="#L-642"><span class="linenos">642</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
+</span><span id="L-643"><a href="#L-643"><span class="linenos">643</span></a>    <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
+</span><span id="L-644"><a href="#L-644"><span class="linenos">644</span></a>    <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-645"><a href="#L-645"><span class="linenos">645</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Data&#39;</span><span class="p">)</span>
+</span><span id="L-646"><a href="#L-646"><span class="linenos">646</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Fit&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">ms</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="L-647"><a href="#L-647"><span class="linenos">647</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
+</span><span id="L-648"><a href="#L-648"><span class="linenos">648</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
+</span><span id="L-649"><a href="#L-649"><span class="linenos">649</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
+</span><span id="L-650"><a href="#L-650"><span class="linenos">650</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="L-651"><a href="#L-651"><span class="linenos">651</span></a>
+</span><span id="L-652"><a href="#L-652"><span class="linenos">652</span></a>    <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-653"><a href="#L-653"><span class="linenos">653</span></a>    <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-654"><a href="#L-654"><span class="linenos">654</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+</span><span id="L-655"><a href="#L-655"><span class="linenos">655</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
+</span><span id="L-656"><a href="#L-656"><span class="linenos">656</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-657"><a href="#L-657"><span class="linenos">657</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
+</span><span id="L-658"><a href="#L-658"><span class="linenos">658</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
+</span><span id="L-659"><a href="#L-659"><span class="linenos">659</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
+</span><span id="L-660"><a href="#L-660"><span class="linenos">660</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
+</span><span id="L-661"><a href="#L-661"><span class="linenos">661</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">subplots_adjust</span><span class="p">(</span><span class="n">wspace</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="L-662"><a href="#L-662"><span class="linenos">662</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-663"><a href="#L-663"><span class="linenos">663</span></a>
+</span><span id="L-664"><a href="#L-664"><span class="linenos">664</span></a>
+</span><span id="L-665"><a href="#L-665"><span class="linenos">665</span></a><span class="k">def</span> <span class="nf">error_band</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">beta</span><span class="p">):</span>
+</span><span id="L-666"><a href="#L-666"><span class="linenos">666</span></a>    <span class="sd">&quot;&quot;&quot;Returns the error band for an array of sample values x, for given fit function func with optimized parameters beta.&quot;&quot;&quot;</span>
+</span><span id="L-667"><a href="#L-667"><span class="linenos">667</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">beta</span><span class="p">)</span>
+</span><span id="L-668"><a href="#L-668"><span class="linenos">668</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">cov</span> <span class="o">-</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1000</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">):</span>
+</span><span id="L-669"><a href="#L-669"><span class="linenos">669</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not symmetric within floating point precision&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-670"><a href="#L-670"><span class="linenos">670</span></a>
+</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a>    <span class="n">deriv</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a>    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a>        <span class="n">deriv</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">egrad</span><span class="p">(</span><span class="n">func</span><span class="p">)([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">beta</span><span class="p">],</span> <span class="n">item</span><span class="p">)))</span>
+</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a>
+</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a>    <span class="n">err</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a>    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a>        <span class="n">err</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
+</span><span id="L-678"><a href="#L-678"><span class="linenos">678</span></a>    <span class="n">err</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">err</span><span class="p">)</span>
+</span><span id="L-679"><a href="#L-679"><span class="linenos">679</span></a>
+</span><span id="L-680"><a href="#L-680"><span class="linenos">680</span></a>    <span class="k">return</span> <span class="n">err</span>
+</span><span id="L-681"><a href="#L-681"><span class="linenos">681</span></a>
+</span><span id="L-682"><a href="#L-682"><span class="linenos">682</span></a>
+</span><span id="L-683"><a href="#L-683"><span class="linenos">683</span></a><span class="k">def</span> <span class="nf">ks_test</span><span class="p">(</span><span class="n">objects</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-684"><a href="#L-684"><span class="linenos">684</span></a>    <span class="sd">&quot;&quot;&quot;Performs a Kolmogorov–Smirnov test for the p-values of all fit object.</span>
+</span><span id="L-685"><a href="#L-685"><span class="linenos">685</span></a>
+</span><span id="L-686"><a href="#L-686"><span class="linenos">686</span></a><span class="sd">    Parameters</span>
+</span><span id="L-687"><a href="#L-687"><span class="linenos">687</span></a><span class="sd">    ----------</span>
+</span><span id="L-688"><a href="#L-688"><span class="linenos">688</span></a><span class="sd">    objects : list</span>
+</span><span id="L-689"><a href="#L-689"><span class="linenos">689</span></a><span class="sd">        List of fit results to include in the analysis (optional).</span>
+</span><span id="L-690"><a href="#L-690"><span class="linenos">690</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-691"><a href="#L-691"><span class="linenos">691</span></a>
+</span><span id="L-692"><a href="#L-692"><span class="linenos">692</span></a>    <span class="k">if</span> <span class="n">objects</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-693"><a href="#L-693"><span class="linenos">693</span></a>        <span class="n">obs_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-694"><a href="#L-694"><span class="linenos">694</span></a>        <span class="k">for</span> <span class="n">obj</span> <span class="ow">in</span> <span class="n">gc</span><span class="o">.</span><span class="n">get_objects</span><span class="p">():</span>
+</span><span id="L-695"><a href="#L-695"><span class="linenos">695</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">Fit_result</span><span class="p">):</span>
+</span><span id="L-696"><a href="#L-696"><span class="linenos">696</span></a>                <span class="n">obs_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+</span><span id="L-697"><a href="#L-697"><span class="linenos">697</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-698"><a href="#L-698"><span class="linenos">698</span></a>        <span class="n">obs_list</span> <span class="o">=</span> <span class="n">objects</span>
+</span><span id="L-699"><a href="#L-699"><span class="linenos">699</span></a>
+</span><span id="L-700"><a href="#L-700"><span class="linenos">700</span></a>    <span class="n">p_values</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">p_value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">]</span>
+</span><span id="L-701"><a href="#L-701"><span class="linenos">701</span></a>
+</span><span id="L-702"><a href="#L-702"><span class="linenos">702</span></a>    <span class="n">bins</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
+</span><span id="L-703"><a href="#L-703"><span class="linenos">703</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mf">1.001</span><span class="p">,</span> <span class="mf">0.001</span><span class="p">)</span>
+</span><span id="L-704"><a href="#L-704"><span class="linenos">704</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-705"><a href="#L-705"><span class="linenos">705</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-706"><a href="#L-706"><span class="linenos">706</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-707"><a href="#L-707"><span class="linenos">707</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;p-value&#39;</span><span class="p">)</span>
+</span><span id="L-708"><a href="#L-708"><span class="linenos">708</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Cumulative probability&#39;</span><span class="p">)</span>
+</span><span id="L-709"><a href="#L-709"><span class="linenos">709</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; p-values&#39;</span><span class="p">)</span>
+</span><span id="L-710"><a href="#L-710"><span class="linenos">710</span></a>
+</span><span id="L-711"><a href="#L-711"><span class="linenos">711</span></a>    <span class="n">n</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">bins</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span>
+</span><span id="L-712"><a href="#L-712"><span class="linenos">712</span></a>    <span class="n">Xs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
+</span><span id="L-713"><a href="#L-713"><span class="linenos">713</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">step</span><span class="p">(</span><span class="n">Xs</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
+</span><span id="L-714"><a href="#L-714"><span class="linenos">714</span></a>    <span class="n">diffs</span> <span class="o">=</span> <span class="n">n</span> <span class="o">-</span> <span class="n">Xs</span>
+</span><span id="L-715"><a href="#L-715"><span class="linenos">715</span></a>    <span class="n">loc_max_diff</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">diffs</span><span class="p">))</span>
+</span><span id="L-716"><a href="#L-716"><span class="linenos">716</span></a>    <span class="n">loc</span> <span class="o">=</span> <span class="n">Xs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]</span>
+</span><span id="L-717"><a href="#L-717"><span class="linenos">717</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">annotate</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">xy</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span><span class="p">),</span> <span class="n">xytext</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span> <span class="o">+</span> <span class="n">diffs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]),</span> <span class="n">arrowprops</span><span class="o">=</span><span class="nb">dict</span><span class="p">(</span><span class="n">arrowstyle</span><span class="o">=</span><span class="s1">&#39;&lt;-&gt;&#39;</span><span class="p">,</span> <span class="n">shrinkA</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">shrinkB</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span>
+</span><span id="L-718"><a href="#L-718"><span class="linenos">718</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-719"><a href="#L-719"><span class="linenos">719</span></a>
+</span><span id="L-720"><a href="#L-720"><span class="linenos">720</span></a>    <span class="nb">print</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">kstest</span><span class="p">(</span><span class="n">p_values</span><span class="p">,</span> <span class="s1">&#39;uniform&#39;</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -836,48 +836,48 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">class</span> <span class="nc">Fit_result</span><span class="p">(</span><span class="n">Sequence</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Represents fit results.</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    fit_parameters : list</span>
-<span class="sd">        results for the individual fit parameters,</span>
-<span class="sd">        also accessible via indices.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
-
-    <span class="k">def</span> <span class="fm">__len__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Apply the gamma method to all fit parameters&quot;&quot;&quot;</span>
-        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">]</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">my_str</span> <span class="o">=</span> <span class="s1">&#39;Goodness of fit:</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_dof&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/d.o.f. = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;residual_variance&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;residual variance = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">residual_variance</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_expected_chisquare&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/</span><span class="se">\u03C7\u00b2</span><span class="s1">exp  = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;p_value&#39;</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;p-value   = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">p_value</span><span class="si">:</span><span class="s1">2.4f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;Fit parameters:</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">for</span> <span class="n">i_par</span><span class="p">,</span> <span class="n">par</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">):</span>
-            <span class="n">my_str</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i_par</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">par</span><span class="p">)</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">))</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
-        <span class="k">return</span> <span class="n">my_str</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">m</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">len</span><span class="p">,</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">keys</span><span class="p">())))</span> <span class="o">+</span> <span class="mi">1</span>
-        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">key</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="n">m</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="nb">repr</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">())])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Fit_result-18"><a href="#Fit_result-18"><span class="linenos">18</span></a><span class="k">class</span> <span class="nc">Fit_result</span><span class="p">(</span><span class="n">Sequence</span><span class="p">):</span>
+</span><span id="Fit_result-19"><a href="#Fit_result-19"><span class="linenos">19</span></a>    <span class="sd">&quot;&quot;&quot;Represents fit results.</span>
+</span><span id="Fit_result-20"><a href="#Fit_result-20"><span class="linenos">20</span></a>
+</span><span id="Fit_result-21"><a href="#Fit_result-21"><span class="linenos">21</span></a><span class="sd">    Attributes</span>
+</span><span id="Fit_result-22"><a href="#Fit_result-22"><span class="linenos">22</span></a><span class="sd">    ----------</span>
+</span><span id="Fit_result-23"><a href="#Fit_result-23"><span class="linenos">23</span></a><span class="sd">    fit_parameters : list</span>
+</span><span id="Fit_result-24"><a href="#Fit_result-24"><span class="linenos">24</span></a><span class="sd">        results for the individual fit parameters,</span>
+</span><span id="Fit_result-25"><a href="#Fit_result-25"><span class="linenos">25</span></a><span class="sd">        also accessible via indices.</span>
+</span><span id="Fit_result-26"><a href="#Fit_result-26"><span class="linenos">26</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="Fit_result-27"><a href="#Fit_result-27"><span class="linenos">27</span></a>
+</span><span id="Fit_result-28"><a href="#Fit_result-28"><span class="linenos">28</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Fit_result-29"><a href="#Fit_result-29"><span class="linenos">29</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Fit_result-30"><a href="#Fit_result-30"><span class="linenos">30</span></a>
+</span><span id="Fit_result-31"><a href="#Fit_result-31"><span class="linenos">31</span></a>    <span class="k">def</span> <span class="fm">__getitem__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">idx</span><span class="p">):</span>
+</span><span id="Fit_result-32"><a href="#Fit_result-32"><span class="linenos">32</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">[</span><span class="n">idx</span><span class="p">]</span>
+</span><span id="Fit_result-33"><a href="#Fit_result-33"><span class="linenos">33</span></a>
+</span><span id="Fit_result-34"><a href="#Fit_result-34"><span class="linenos">34</span></a>    <span class="k">def</span> <span class="fm">__len__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Fit_result-35"><a href="#Fit_result-35"><span class="linenos">35</span></a>        <span class="k">return</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">)</span>
+</span><span id="Fit_result-36"><a href="#Fit_result-36"><span class="linenos">36</span></a>
+</span><span id="Fit_result-37"><a href="#Fit_result-37"><span class="linenos">37</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Fit_result-38"><a href="#Fit_result-38"><span class="linenos">38</span></a>        <span class="sd">&quot;&quot;&quot;Apply the gamma method to all fit parameters&quot;&quot;&quot;</span>
+</span><span id="Fit_result-39"><a href="#Fit_result-39"><span class="linenos">39</span></a>        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">]</span>
+</span><span id="Fit_result-40"><a href="#Fit_result-40"><span class="linenos">40</span></a>
+</span><span id="Fit_result-41"><a href="#Fit_result-41"><span class="linenos">41</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Fit_result-42"><a href="#Fit_result-42"><span class="linenos">42</span></a>        <span class="n">my_str</span> <span class="o">=</span> <span class="s1">&#39;Goodness of fit:</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Fit_result-43"><a href="#Fit_result-43"><span class="linenos">43</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_dof&#39;</span><span class="p">):</span>
+</span><span id="Fit_result-44"><a href="#Fit_result-44"><span class="linenos">44</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/d.o.f. = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_dof</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Fit_result-45"><a href="#Fit_result-45"><span class="linenos">45</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;residual_variance&#39;</span><span class="p">):</span>
+</span><span id="Fit_result-46"><a href="#Fit_result-46"><span class="linenos">46</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;residual variance = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">residual_variance</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Fit_result-47"><a href="#Fit_result-47"><span class="linenos">47</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;chisquare_by_expected_chisquare&#39;</span><span class="p">):</span>
+</span><span id="Fit_result-48"><a href="#Fit_result-48"><span class="linenos">48</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\u03C7\u00b2</span><span class="s1">/</span><span class="se">\u03C7\u00b2</span><span class="s1">exp  = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="si">:</span><span class="s1">2.6f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Fit_result-49"><a href="#Fit_result-49"><span class="linenos">49</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;p_value&#39;</span><span class="p">):</span>
+</span><span id="Fit_result-50"><a href="#Fit_result-50"><span class="linenos">50</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;p-value   = &#39;</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">p_value</span><span class="si">:</span><span class="s1">2.4f</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Fit_result-51"><a href="#Fit_result-51"><span class="linenos">51</span></a>        <span class="n">my_str</span> <span class="o">+=</span> <span class="s1">&#39;Fit parameters:</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Fit_result-52"><a href="#Fit_result-52"><span class="linenos">52</span></a>        <span class="k">for</span> <span class="n">i_par</span><span class="p">,</span> <span class="n">par</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">):</span>
+</span><span id="Fit_result-53"><a href="#Fit_result-53"><span class="linenos">53</span></a>            <span class="n">my_str</span> <span class="o">+=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i_par</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">par</span><span class="p">)</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">par</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">))</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span>
+</span><span id="Fit_result-54"><a href="#Fit_result-54"><span class="linenos">54</span></a>        <span class="k">return</span> <span class="n">my_str</span>
+</span><span id="Fit_result-55"><a href="#Fit_result-55"><span class="linenos">55</span></a>
+</span><span id="Fit_result-56"><a href="#Fit_result-56"><span class="linenos">56</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Fit_result-57"><a href="#Fit_result-57"><span class="linenos">57</span></a>        <span class="n">m</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">len</span><span class="p">,</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">keys</span><span class="p">())))</span> <span class="o">+</span> <span class="mi">1</span>
+</span><span id="Fit_result-58"><a href="#Fit_result-58"><span class="linenos">58</span></a>        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">key</span><span class="o">.</span><span class="n">rjust</span><span class="p">(</span><span class="n">m</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="nb">repr</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">items</span><span class="p">())])</span>
+</span></pre></div>
 
         </details>
 
@@ -902,9 +902,9 @@ also accessible via indices.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="kc">None</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Fit_result.__init__-28"><a href="#Fit_result.__init__-28"><span class="linenos">28</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Fit_result.__init__-29"><a href="#Fit_result.__init__-29"><span class="linenos">29</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="kc">None</span>
+</span></pre></div>
 
         </details>
 
@@ -921,10 +921,10 @@ also accessible via indices.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Apply the gamma method to all fit parameters&quot;&quot;&quot;</span>
-        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">]</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Fit_result.gamma_method-37"><a href="#Fit_result.gamma_method-37"><span class="linenos">37</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Fit_result.gamma_method-38"><a href="#Fit_result.gamma_method-38"><span class="linenos">38</span></a>        <span class="sd">&quot;&quot;&quot;Apply the gamma method to all fit parameters&quot;&quot;&quot;</span>
+</span><span id="Fit_result.gamma_method-39"><a href="#Fit_result.gamma_method-39"><span class="linenos">39</span></a>        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">fit_parameters</span><span class="p">]</span>
+</span></pre></div>
 
         </details>
 
@@ -954,68 +954,68 @@ also accessible via indices.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x).</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    x : list</span>
-<span class="sd">        list of floats.</span>
-<span class="sd">    y : list</span>
-<span class="sd">        list of Obs.</span>
-<span class="sd">    func : object</span>
-<span class="sd">        fit function, has to be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        import autograd.numpy as anp</span>
-
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        For multiple x values func can be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            (x1, x2) = x</span>
-<span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
-<span class="sd">        will not work.</span>
-<span class="sd">    priors : list, optional</span>
-<span class="sd">        priors has to be a list with an entry for every parameter in the fit. The entries can either be</span>
-<span class="sd">        Obs (e.g. results from a previous fit) or strings containing a value and an error formatted like</span>
-<span class="sd">        0.548(23), 500(40) or 0.5(0.4)</span>
-<span class="sd">    silent : bool, optional</span>
-<span class="sd">        If true all output to the console is omitted (default False).</span>
-<span class="sd">    initial_guess : list</span>
-<span class="sd">        can provide an initial guess for the input parameters. Relevant for</span>
-<span class="sd">        non-linear fits with many parameters.</span>
-<span class="sd">    method : str, optional</span>
-<span class="sd">        can be used to choose an alternative method for the minimization of chisquare.</span>
-<span class="sd">        The possible methods are the ones which can be used for scipy.optimize.minimize and</span>
-<span class="sd">        migrad of iminuit. If no method is specified, Levenberg-Marquard is used.</span>
-<span class="sd">        Reliable alternatives are migrad, Powell and Nelder-Mead.</span>
-<span class="sd">    correlated_fit : bool</span>
-<span class="sd">        If True, use the full inverse covariance matrix in the definition of the chisquare cost function.</span>
-<span class="sd">        For details about how the covariance matrix is estimated see `pyerrors.obs.covariance`.</span>
-<span class="sd">        In practice the correlation matrix is Cholesky decomposed and inverted (instead of the covariance matrix).</span>
-<span class="sd">        This procedure should be numerically more stable as the correlation matrix is typically better conditioned (Jacobi preconditioning).</span>
-<span class="sd">        At the moment this option only works for `prior==None` and when no `method` is given.</span>
-<span class="sd">    expected_chisquare : bool</span>
-<span class="sd">        If True estimates the expected chisquare which is</span>
-<span class="sd">        corrected by effects caused by correlated input data (default False).</span>
-<span class="sd">    resplot : bool</span>
-<span class="sd">        If True, a plot which displays fit, data and residuals is generated (default False).</span>
-<span class="sd">    qqplot : bool</span>
-<span class="sd">        If True, a quantile-quantile plot of the fit result is generated (default False).</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-    <span class="k">if</span> <span class="n">priors</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">_prior_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">_standard_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="least_squares-61"><a href="#least_squares-61"><span class="linenos"> 61</span></a><span class="k">def</span> <span class="nf">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="least_squares-62"><a href="#least_squares-62"><span class="linenos"> 62</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x).</span>
+</span><span id="least_squares-63"><a href="#least_squares-63"><span class="linenos"> 63</span></a>
+</span><span id="least_squares-64"><a href="#least_squares-64"><span class="linenos"> 64</span></a><span class="sd">    Parameters</span>
+</span><span id="least_squares-65"><a href="#least_squares-65"><span class="linenos"> 65</span></a><span class="sd">    ----------</span>
+</span><span id="least_squares-66"><a href="#least_squares-66"><span class="linenos"> 66</span></a><span class="sd">    x : list</span>
+</span><span id="least_squares-67"><a href="#least_squares-67"><span class="linenos"> 67</span></a><span class="sd">        list of floats.</span>
+</span><span id="least_squares-68"><a href="#least_squares-68"><span class="linenos"> 68</span></a><span class="sd">    y : list</span>
+</span><span id="least_squares-69"><a href="#least_squares-69"><span class="linenos"> 69</span></a><span class="sd">        list of Obs.</span>
+</span><span id="least_squares-70"><a href="#least_squares-70"><span class="linenos"> 70</span></a><span class="sd">    func : object</span>
+</span><span id="least_squares-71"><a href="#least_squares-71"><span class="linenos"> 71</span></a><span class="sd">        fit function, has to be of the form</span>
+</span><span id="least_squares-72"><a href="#least_squares-72"><span class="linenos"> 72</span></a>
+</span><span id="least_squares-73"><a href="#least_squares-73"><span class="linenos"> 73</span></a><span class="sd">        ```python</span>
+</span><span id="least_squares-74"><a href="#least_squares-74"><span class="linenos"> 74</span></a><span class="sd">        import autograd.numpy as anp</span>
+</span><span id="least_squares-75"><a href="#least_squares-75"><span class="linenos"> 75</span></a>
+</span><span id="least_squares-76"><a href="#least_squares-76"><span class="linenos"> 76</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="least_squares-77"><a href="#least_squares-77"><span class="linenos"> 77</span></a><span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
+</span><span id="least_squares-78"><a href="#least_squares-78"><span class="linenos"> 78</span></a><span class="sd">        ```</span>
+</span><span id="least_squares-79"><a href="#least_squares-79"><span class="linenos"> 79</span></a>
+</span><span id="least_squares-80"><a href="#least_squares-80"><span class="linenos"> 80</span></a><span class="sd">        For multiple x values func can be of the form</span>
+</span><span id="least_squares-81"><a href="#least_squares-81"><span class="linenos"> 81</span></a>
+</span><span id="least_squares-82"><a href="#least_squares-82"><span class="linenos"> 82</span></a><span class="sd">        ```python</span>
+</span><span id="least_squares-83"><a href="#least_squares-83"><span class="linenos"> 83</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="least_squares-84"><a href="#least_squares-84"><span class="linenos"> 84</span></a><span class="sd">            (x1, x2) = x</span>
+</span><span id="least_squares-85"><a href="#least_squares-85"><span class="linenos"> 85</span></a><span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
+</span><span id="least_squares-86"><a href="#least_squares-86"><span class="linenos"> 86</span></a><span class="sd">        ```</span>
+</span><span id="least_squares-87"><a href="#least_squares-87"><span class="linenos"> 87</span></a>
+</span><span id="least_squares-88"><a href="#least_squares-88"><span class="linenos"> 88</span></a><span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
+</span><span id="least_squares-89"><a href="#least_squares-89"><span class="linenos"> 89</span></a><span class="sd">        will not work.</span>
+</span><span id="least_squares-90"><a href="#least_squares-90"><span class="linenos"> 90</span></a><span class="sd">    priors : list, optional</span>
+</span><span id="least_squares-91"><a href="#least_squares-91"><span class="linenos"> 91</span></a><span class="sd">        priors has to be a list with an entry for every parameter in the fit. The entries can either be</span>
+</span><span id="least_squares-92"><a href="#least_squares-92"><span class="linenos"> 92</span></a><span class="sd">        Obs (e.g. results from a previous fit) or strings containing a value and an error formatted like</span>
+</span><span id="least_squares-93"><a href="#least_squares-93"><span class="linenos"> 93</span></a><span class="sd">        0.548(23), 500(40) or 0.5(0.4)</span>
+</span><span id="least_squares-94"><a href="#least_squares-94"><span class="linenos"> 94</span></a><span class="sd">    silent : bool, optional</span>
+</span><span id="least_squares-95"><a href="#least_squares-95"><span class="linenos"> 95</span></a><span class="sd">        If true all output to the console is omitted (default False).</span>
+</span><span id="least_squares-96"><a href="#least_squares-96"><span class="linenos"> 96</span></a><span class="sd">    initial_guess : list</span>
+</span><span id="least_squares-97"><a href="#least_squares-97"><span class="linenos"> 97</span></a><span class="sd">        can provide an initial guess for the input parameters. Relevant for</span>
+</span><span id="least_squares-98"><a href="#least_squares-98"><span class="linenos"> 98</span></a><span class="sd">        non-linear fits with many parameters.</span>
+</span><span id="least_squares-99"><a href="#least_squares-99"><span class="linenos"> 99</span></a><span class="sd">    method : str, optional</span>
+</span><span id="least_squares-100"><a href="#least_squares-100"><span class="linenos">100</span></a><span class="sd">        can be used to choose an alternative method for the minimization of chisquare.</span>
+</span><span id="least_squares-101"><a href="#least_squares-101"><span class="linenos">101</span></a><span class="sd">        The possible methods are the ones which can be used for scipy.optimize.minimize and</span>
+</span><span id="least_squares-102"><a href="#least_squares-102"><span class="linenos">102</span></a><span class="sd">        migrad of iminuit. If no method is specified, Levenberg-Marquard is used.</span>
+</span><span id="least_squares-103"><a href="#least_squares-103"><span class="linenos">103</span></a><span class="sd">        Reliable alternatives are migrad, Powell and Nelder-Mead.</span>
+</span><span id="least_squares-104"><a href="#least_squares-104"><span class="linenos">104</span></a><span class="sd">    correlated_fit : bool</span>
+</span><span id="least_squares-105"><a href="#least_squares-105"><span class="linenos">105</span></a><span class="sd">        If True, use the full inverse covariance matrix in the definition of the chisquare cost function.</span>
+</span><span id="least_squares-106"><a href="#least_squares-106"><span class="linenos">106</span></a><span class="sd">        For details about how the covariance matrix is estimated see `pyerrors.obs.covariance`.</span>
+</span><span id="least_squares-107"><a href="#least_squares-107"><span class="linenos">107</span></a><span class="sd">        In practice the correlation matrix is Cholesky decomposed and inverted (instead of the covariance matrix).</span>
+</span><span id="least_squares-108"><a href="#least_squares-108"><span class="linenos">108</span></a><span class="sd">        This procedure should be numerically more stable as the correlation matrix is typically better conditioned (Jacobi preconditioning).</span>
+</span><span id="least_squares-109"><a href="#least_squares-109"><span class="linenos">109</span></a><span class="sd">        At the moment this option only works for `prior==None` and when no `method` is given.</span>
+</span><span id="least_squares-110"><a href="#least_squares-110"><span class="linenos">110</span></a><span class="sd">    expected_chisquare : bool</span>
+</span><span id="least_squares-111"><a href="#least_squares-111"><span class="linenos">111</span></a><span class="sd">        If True estimates the expected chisquare which is</span>
+</span><span id="least_squares-112"><a href="#least_squares-112"><span class="linenos">112</span></a><span class="sd">        corrected by effects caused by correlated input data (default False).</span>
+</span><span id="least_squares-113"><a href="#least_squares-113"><span class="linenos">113</span></a><span class="sd">    resplot : bool</span>
+</span><span id="least_squares-114"><a href="#least_squares-114"><span class="linenos">114</span></a><span class="sd">        If True, a plot which displays fit, data and residuals is generated (default False).</span>
+</span><span id="least_squares-115"><a href="#least_squares-115"><span class="linenos">115</span></a><span class="sd">    qqplot : bool</span>
+</span><span id="least_squares-116"><a href="#least_squares-116"><span class="linenos">116</span></a><span class="sd">        If True, a quantile-quantile plot of the fit result is generated (default False).</span>
+</span><span id="least_squares-117"><a href="#least_squares-117"><span class="linenos">117</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="least_squares-118"><a href="#least_squares-118"><span class="linenos">118</span></a>    <span class="k">if</span> <span class="n">priors</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="least_squares-119"><a href="#least_squares-119"><span class="linenos">119</span></a>        <span class="k">return</span> <span class="n">_prior_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">priors</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="least_squares-120"><a href="#least_squares-120"><span class="linenos">120</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="least_squares-121"><a href="#least_squares-121"><span class="linenos">121</span></a>        <span class="k">return</span> <span class="n">_standard_fit</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="n">silent</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -1088,183 +1088,183 @@ If True, a quantile-quantile plot of the fit result is generated (default False)
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x) and returns a list of Obs corresponding to the fit parameters.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    x : list</span>
-<span class="sd">        list of Obs, or a tuple of lists of Obs</span>
-<span class="sd">    y : list</span>
-<span class="sd">        list of Obs. The dvalues of the Obs are used as x- and yerror for the fit.</span>
-<span class="sd">    func : object</span>
-<span class="sd">        func has to be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        import autograd.numpy as anp</span>
-
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        For multiple x values func can be of the form</span>
-
-<span class="sd">        ```python</span>
-<span class="sd">        def func(a, x):</span>
-<span class="sd">            (x1, x2) = x</span>
-<span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
-<span class="sd">        ```</span>
-
-<span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
-<span class="sd">        will not work.</span>
-<span class="sd">    silent : bool, optional</span>
-<span class="sd">        If true all output to the console is omitted (default False).</span>
-<span class="sd">    initial_guess : list</span>
-<span class="sd">        can provide an initial guess for the input parameters. Relevant for non-linear</span>
-<span class="sd">        fits with many parameters.</span>
-<span class="sd">    expected_chisquare : bool</span>
-<span class="sd">        If true prints the expected chisquare which is</span>
-<span class="sd">        corrected by effects caused by correlated input data.</span>
-<span class="sd">        This can take a while as the full correlation matrix</span>
-<span class="sd">        has to be calculated (default False).</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    Based on the orthogonal distance regression module of scipy</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-
-    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
-
-    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-
-    <span class="n">x_shape</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
-
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">25</span><span class="p">):</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="n">x</span><span class="o">.</span><span class="n">T</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-            <span class="k">pass</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">break</span>
-
-    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
-
-    <span class="n">x_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
-    <span class="n">dx_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
-    <span class="n">y_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-    <span class="n">dy_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dx_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No x errors available, run the gamma method first.&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">),</span> <span class="n">n_parms</span><span class="p">))</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">x0</span> <span class="o">=</span> <span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">n_parms</span>
-
-    <span class="n">data</span> <span class="o">=</span> <span class="n">RealData</span><span class="p">(</span><span class="n">x_f</span><span class="p">,</span> <span class="n">y_f</span><span class="p">,</span> <span class="n">sx</span><span class="o">=</span><span class="n">dx_f</span><span class="p">,</span> <span class="n">sy</span><span class="o">=</span><span class="n">dy_f</span><span class="p">)</span>
-    <span class="n">model</span> <span class="o">=</span> <span class="n">Model</span><span class="p">(</span><span class="n">func</span><span class="p">)</span>
-    <span class="n">odr</span> <span class="o">=</span> <span class="n">ODR</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">model</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">partol</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span>
-    <span class="n">odr</span><span class="o">.</span><span class="n">set_job</span><span class="p">(</span><span class="n">fit_type</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">deriv</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-    <span class="n">out</span> <span class="o">=</span> <span class="n">odr</span><span class="o">.</span><span class="n">run</span><span class="p">()</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">res_var</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="s1">&#39;ODR&#39;</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">stopreason</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">xplus</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method: ODR&#39;</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="o">*</span><span class="n">out</span><span class="o">.</span><span class="n">stopreason</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Residual variance:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">out</span><span class="o">.</span><span class="n">info</span> <span class="o">&gt;</span> <span class="mi">3</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
-
-    <span class="n">m</span> <span class="o">=</span> <span class="n">x_f</span><span class="o">.</span><span class="n">size</span>
-
-    <span class="k">def</span> <span class="nf">odr_chisquare</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;expected_chisquare&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">W</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">dy_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">dx_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">cov</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
-
-        <span class="n">number_of_x_parameters</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">m</span> <span class="o">/</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-
-        <span class="n">old_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">)</span>
-        <span class="n">fused_row1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">old_jac</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">)]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)))</span>
-        <span class="n">fused_row2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="p">))(</span><span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">number_of_x_parameters</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])))</span>
-        <span class="n">new_jac</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fused_row1</span><span class="p">,</span> <span class="n">fused_row2</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-
-        <span class="n">A</span> <span class="o">=</span> <span class="n">W</span> <span class="o">@</span> <span class="n">new_jac</span>
-        <span class="n">P_phi</span> <span class="o">=</span> <span class="n">A</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">A</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">A</span><span class="p">)</span> <span class="o">@</span> <span class="n">A</span><span class="o">.</span><span class="n">T</span>
-        <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">trace</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">P_phi</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">-</span> <span class="n">P_phi</span><span class="p">)</span> <span class="o">@</span> <span class="n">W</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">W</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">expected_chisquare</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Negative expected_chisquare.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-            <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">expected_chisquare</span><span class="p">)</span>
-        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span> <span class="o">/</span> <span class="n">expected_chisquare</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/expected_chisquare:&#39;</span><span class="p">,</span>
-                  <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="p">)</span>
-
-    <span class="n">fitp</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
-    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within fit functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
-
-    <span class="k">def</span> <span class="nf">odr_chisquare_compact_x</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">)</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="n">jac_jac_x</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_x</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">x_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
-
-    <span class="n">deriv_x</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_x</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
-
-    <span class="k">def</span> <span class="nf">odr_chisquare_compact_y</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
-        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">chisq</span>
-
-    <span class="n">jac_jac_y</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_y</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">y_f</span><span class="p">)))</span>
-
-    <span class="n">deriv_y</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_y</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">my_var</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">my_var</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv_x</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">deriv_y</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
-
-    <span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
-    <span class="n">output</span><span class="o">.</span><span class="n">dof</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span>
-    <span class="n">output</span><span class="o">.</span><span class="n">p_value</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">chi2</span><span class="o">.</span><span class="n">cdf</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">dof</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">output</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="total_least_squares-124"><a href="#total_least_squares-124"><span class="linenos">124</span></a><span class="k">def</span> <span class="nf">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">silent</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="total_least_squares-125"><a href="#total_least_squares-125"><span class="linenos">125</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Performs a non-linear fit to y = func(x) and returns a list of Obs corresponding to the fit parameters.</span>
+</span><span id="total_least_squares-126"><a href="#total_least_squares-126"><span class="linenos">126</span></a>
+</span><span id="total_least_squares-127"><a href="#total_least_squares-127"><span class="linenos">127</span></a><span class="sd">    Parameters</span>
+</span><span id="total_least_squares-128"><a href="#total_least_squares-128"><span class="linenos">128</span></a><span class="sd">    ----------</span>
+</span><span id="total_least_squares-129"><a href="#total_least_squares-129"><span class="linenos">129</span></a><span class="sd">    x : list</span>
+</span><span id="total_least_squares-130"><a href="#total_least_squares-130"><span class="linenos">130</span></a><span class="sd">        list of Obs, or a tuple of lists of Obs</span>
+</span><span id="total_least_squares-131"><a href="#total_least_squares-131"><span class="linenos">131</span></a><span class="sd">    y : list</span>
+</span><span id="total_least_squares-132"><a href="#total_least_squares-132"><span class="linenos">132</span></a><span class="sd">        list of Obs. The dvalues of the Obs are used as x- and yerror for the fit.</span>
+</span><span id="total_least_squares-133"><a href="#total_least_squares-133"><span class="linenos">133</span></a><span class="sd">    func : object</span>
+</span><span id="total_least_squares-134"><a href="#total_least_squares-134"><span class="linenos">134</span></a><span class="sd">        func has to be of the form</span>
+</span><span id="total_least_squares-135"><a href="#total_least_squares-135"><span class="linenos">135</span></a>
+</span><span id="total_least_squares-136"><a href="#total_least_squares-136"><span class="linenos">136</span></a><span class="sd">        ```python</span>
+</span><span id="total_least_squares-137"><a href="#total_least_squares-137"><span class="linenos">137</span></a><span class="sd">        import autograd.numpy as anp</span>
+</span><span id="total_least_squares-138"><a href="#total_least_squares-138"><span class="linenos">138</span></a>
+</span><span id="total_least_squares-139"><a href="#total_least_squares-139"><span class="linenos">139</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="total_least_squares-140"><a href="#total_least_squares-140"><span class="linenos">140</span></a><span class="sd">            return a[0] + a[1] * x + a[2] * anp.sinh(x)</span>
+</span><span id="total_least_squares-141"><a href="#total_least_squares-141"><span class="linenos">141</span></a><span class="sd">        ```</span>
+</span><span id="total_least_squares-142"><a href="#total_least_squares-142"><span class="linenos">142</span></a>
+</span><span id="total_least_squares-143"><a href="#total_least_squares-143"><span class="linenos">143</span></a><span class="sd">        For multiple x values func can be of the form</span>
+</span><span id="total_least_squares-144"><a href="#total_least_squares-144"><span class="linenos">144</span></a>
+</span><span id="total_least_squares-145"><a href="#total_least_squares-145"><span class="linenos">145</span></a><span class="sd">        ```python</span>
+</span><span id="total_least_squares-146"><a href="#total_least_squares-146"><span class="linenos">146</span></a><span class="sd">        def func(a, x):</span>
+</span><span id="total_least_squares-147"><a href="#total_least_squares-147"><span class="linenos">147</span></a><span class="sd">            (x1, x2) = x</span>
+</span><span id="total_least_squares-148"><a href="#total_least_squares-148"><span class="linenos">148</span></a><span class="sd">            return a[0] * x1 ** 2 + a[1] * x2</span>
+</span><span id="total_least_squares-149"><a href="#total_least_squares-149"><span class="linenos">149</span></a><span class="sd">        ```</span>
+</span><span id="total_least_squares-150"><a href="#total_least_squares-150"><span class="linenos">150</span></a>
+</span><span id="total_least_squares-151"><a href="#total_least_squares-151"><span class="linenos">151</span></a><span class="sd">        It is important that all numpy functions refer to autograd.numpy, otherwise the differentiation</span>
+</span><span id="total_least_squares-152"><a href="#total_least_squares-152"><span class="linenos">152</span></a><span class="sd">        will not work.</span>
+</span><span id="total_least_squares-153"><a href="#total_least_squares-153"><span class="linenos">153</span></a><span class="sd">    silent : bool, optional</span>
+</span><span id="total_least_squares-154"><a href="#total_least_squares-154"><span class="linenos">154</span></a><span class="sd">        If true all output to the console is omitted (default False).</span>
+</span><span id="total_least_squares-155"><a href="#total_least_squares-155"><span class="linenos">155</span></a><span class="sd">    initial_guess : list</span>
+</span><span id="total_least_squares-156"><a href="#total_least_squares-156"><span class="linenos">156</span></a><span class="sd">        can provide an initial guess for the input parameters. Relevant for non-linear</span>
+</span><span id="total_least_squares-157"><a href="#total_least_squares-157"><span class="linenos">157</span></a><span class="sd">        fits with many parameters.</span>
+</span><span id="total_least_squares-158"><a href="#total_least_squares-158"><span class="linenos">158</span></a><span class="sd">    expected_chisquare : bool</span>
+</span><span id="total_least_squares-159"><a href="#total_least_squares-159"><span class="linenos">159</span></a><span class="sd">        If true prints the expected chisquare which is</span>
+</span><span id="total_least_squares-160"><a href="#total_least_squares-160"><span class="linenos">160</span></a><span class="sd">        corrected by effects caused by correlated input data.</span>
+</span><span id="total_least_squares-161"><a href="#total_least_squares-161"><span class="linenos">161</span></a><span class="sd">        This can take a while as the full correlation matrix</span>
+</span><span id="total_least_squares-162"><a href="#total_least_squares-162"><span class="linenos">162</span></a><span class="sd">        has to be calculated (default False).</span>
+</span><span id="total_least_squares-163"><a href="#total_least_squares-163"><span class="linenos">163</span></a>
+</span><span id="total_least_squares-164"><a href="#total_least_squares-164"><span class="linenos">164</span></a><span class="sd">    Notes</span>
+</span><span id="total_least_squares-165"><a href="#total_least_squares-165"><span class="linenos">165</span></a><span class="sd">    -----</span>
+</span><span id="total_least_squares-166"><a href="#total_least_squares-166"><span class="linenos">166</span></a><span class="sd">    Based on the orthogonal distance regression module of scipy</span>
+</span><span id="total_least_squares-167"><a href="#total_least_squares-167"><span class="linenos">167</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="total_least_squares-168"><a href="#total_least_squares-168"><span class="linenos">168</span></a>
+</span><span id="total_least_squares-169"><a href="#total_least_squares-169"><span class="linenos">169</span></a>    <span class="n">output</span> <span class="o">=</span> <span class="n">Fit_result</span><span class="p">()</span>
+</span><span id="total_least_squares-170"><a href="#total_least_squares-170"><span class="linenos">170</span></a>
+</span><span id="total_least_squares-171"><a href="#total_least_squares-171"><span class="linenos">171</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_function</span> <span class="o">=</span> <span class="n">func</span>
+</span><span id="total_least_squares-172"><a href="#total_least_squares-172"><span class="linenos">172</span></a>
+</span><span id="total_least_squares-173"><a href="#total_least_squares-173"><span class="linenos">173</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="total_least_squares-174"><a href="#total_least_squares-174"><span class="linenos">174</span></a>
+</span><span id="total_least_squares-175"><a href="#total_least_squares-175"><span class="linenos">175</span></a>    <span class="n">x_shape</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span>
+</span><span id="total_least_squares-176"><a href="#total_least_squares-176"><span class="linenos">176</span></a>
+</span><span id="total_least_squares-177"><a href="#total_least_squares-177"><span class="linenos">177</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">callable</span><span class="p">(</span><span class="n">func</span><span class="p">):</span>
+</span><span id="total_least_squares-178"><a href="#total_least_squares-178"><span class="linenos">178</span></a>        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;func has to be a function.&#39;</span><span class="p">)</span>
+</span><span id="total_least_squares-179"><a href="#total_least_squares-179"><span class="linenos">179</span></a>
+</span><span id="total_least_squares-180"><a href="#total_least_squares-180"><span class="linenos">180</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">25</span><span class="p">):</span>
+</span><span id="total_least_squares-181"><a href="#total_least_squares-181"><span class="linenos">181</span></a>        <span class="k">try</span><span class="p">:</span>
+</span><span id="total_least_squares-182"><a href="#total_least_squares-182"><span class="linenos">182</span></a>            <span class="n">func</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">i</span><span class="p">),</span> <span class="n">x</span><span class="o">.</span><span class="n">T</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="total_least_squares-183"><a href="#total_least_squares-183"><span class="linenos">183</span></a>        <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="total_least_squares-184"><a href="#total_least_squares-184"><span class="linenos">184</span></a>            <span class="k">pass</span>
+</span><span id="total_least_squares-185"><a href="#total_least_squares-185"><span class="linenos">185</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="total_least_squares-186"><a href="#total_least_squares-186"><span class="linenos">186</span></a>            <span class="k">break</span>
+</span><span id="total_least_squares-187"><a href="#total_least_squares-187"><span class="linenos">187</span></a>
+</span><span id="total_least_squares-188"><a href="#total_least_squares-188"><span class="linenos">188</span></a>    <span class="n">n_parms</span> <span class="o">=</span> <span class="n">i</span>
+</span><span id="total_least_squares-189"><a href="#total_least_squares-189"><span class="linenos">189</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="total_least_squares-190"><a href="#total_least_squares-190"><span class="linenos">190</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Fit with&#39;</span><span class="p">,</span> <span class="n">n_parms</span><span class="p">,</span> <span class="s1">&#39;parameter&#39;</span> <span class="o">+</span> <span class="s1">&#39;s&#39;</span> <span class="o">*</span> <span class="p">(</span><span class="n">n_parms</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="total_least_squares-191"><a href="#total_least_squares-191"><span class="linenos">191</span></a>
+</span><span id="total_least_squares-192"><a href="#total_least_squares-192"><span class="linenos">192</span></a>    <span class="n">x_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="total_least_squares-193"><a href="#total_least_squares-193"><span class="linenos">193</span></a>    <span class="n">dx_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="total_least_squares-194"><a href="#total_least_squares-194"><span class="linenos">194</span></a>    <span class="n">y_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="total_least_squares-195"><a href="#total_least_squares-195"><span class="linenos">195</span></a>    <span class="n">dy_f</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="total_least_squares-196"><a href="#total_least_squares-196"><span class="linenos">196</span></a>
+</span><span id="total_least_squares-197"><a href="#total_least_squares-197"><span class="linenos">197</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dx_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="total_least_squares-198"><a href="#total_least_squares-198"><span class="linenos">198</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No x errors available, run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="total_least_squares-199"><a href="#total_least_squares-199"><span class="linenos">199</span></a>
+</span><span id="total_least_squares-200"><a href="#total_least_squares-200"><span class="linenos">200</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">dy_f</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="total_least_squares-201"><a href="#total_least_squares-201"><span class="linenos">201</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No y errors available, run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="total_least_squares-202"><a href="#total_least_squares-202"><span class="linenos">202</span></a>
+</span><span id="total_least_squares-203"><a href="#total_least_squares-203"><span class="linenos">203</span></a>    <span class="k">if</span> <span class="s1">&#39;initial_guess&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="total_least_squares-204"><a href="#total_least_squares-204"><span class="linenos">204</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;initial_guess&#39;</span><span class="p">)</span>
+</span><span id="total_least_squares-205"><a href="#total_least_squares-205"><span class="linenos">205</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">)</span> <span class="o">!=</span> <span class="n">n_parms</span><span class="p">:</span>
+</span><span id="total_least_squares-206"><a href="#total_least_squares-206"><span class="linenos">206</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Initial guess does not have the correct length: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x0</span><span class="p">),</span> <span class="n">n_parms</span><span class="p">))</span>
+</span><span id="total_least_squares-207"><a href="#total_least_squares-207"><span class="linenos">207</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="total_least_squares-208"><a href="#total_least_squares-208"><span class="linenos">208</span></a>        <span class="n">x0</span> <span class="o">=</span> <span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">n_parms</span>
+</span><span id="total_least_squares-209"><a href="#total_least_squares-209"><span class="linenos">209</span></a>
+</span><span id="total_least_squares-210"><a href="#total_least_squares-210"><span class="linenos">210</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="n">RealData</span><span class="p">(</span><span class="n">x_f</span><span class="p">,</span> <span class="n">y_f</span><span class="p">,</span> <span class="n">sx</span><span class="o">=</span><span class="n">dx_f</span><span class="p">,</span> <span class="n">sy</span><span class="o">=</span><span class="n">dy_f</span><span class="p">)</span>
+</span><span id="total_least_squares-211"><a href="#total_least_squares-211"><span class="linenos">211</span></a>    <span class="n">model</span> <span class="o">=</span> <span class="n">Model</span><span class="p">(</span><span class="n">func</span><span class="p">)</span>
+</span><span id="total_least_squares-212"><a href="#total_least_squares-212"><span class="linenos">212</span></a>    <span class="n">odr</span> <span class="o">=</span> <span class="n">ODR</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">model</span><span class="p">,</span> <span class="n">x0</span><span class="p">,</span> <span class="n">partol</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span>
+</span><span id="total_least_squares-213"><a href="#total_least_squares-213"><span class="linenos">213</span></a>    <span class="n">odr</span><span class="o">.</span><span class="n">set_job</span><span class="p">(</span><span class="n">fit_type</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">deriv</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="total_least_squares-214"><a href="#total_least_squares-214"><span class="linenos">214</span></a>    <span class="n">out</span> <span class="o">=</span> <span class="n">odr</span><span class="o">.</span><span class="n">run</span><span class="p">()</span>
+</span><span id="total_least_squares-215"><a href="#total_least_squares-215"><span class="linenos">215</span></a>
+</span><span id="total_least_squares-216"><a href="#total_least_squares-216"><span class="linenos">216</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">res_var</span>
+</span><span id="total_least_squares-217"><a href="#total_least_squares-217"><span class="linenos">217</span></a>
+</span><span id="total_least_squares-218"><a href="#total_least_squares-218"><span class="linenos">218</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">method</span> <span class="o">=</span> <span class="s1">&#39;ODR&#39;</span>
+</span><span id="total_least_squares-219"><a href="#total_least_squares-219"><span class="linenos">219</span></a>
+</span><span id="total_least_squares-220"><a href="#total_least_squares-220"><span class="linenos">220</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">message</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">stopreason</span>
+</span><span id="total_least_squares-221"><a href="#total_least_squares-221"><span class="linenos">221</span></a>
+</span><span id="total_least_squares-222"><a href="#total_least_squares-222"><span class="linenos">222</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">xplus</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span>
+</span><span id="total_least_squares-223"><a href="#total_least_squares-223"><span class="linenos">223</span></a>
+</span><span id="total_least_squares-224"><a href="#total_least_squares-224"><span class="linenos">224</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="total_least_squares-225"><a href="#total_least_squares-225"><span class="linenos">225</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Method: ODR&#39;</span><span class="p">)</span>
+</span><span id="total_least_squares-226"><a href="#total_least_squares-226"><span class="linenos">226</span></a>        <span class="nb">print</span><span class="p">(</span><span class="o">*</span><span class="n">out</span><span class="o">.</span><span class="n">stopreason</span><span class="p">)</span>
+</span><span id="total_least_squares-227"><a href="#total_least_squares-227"><span class="linenos">227</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Residual variance:&#39;</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">residual_variance</span><span class="p">)</span>
+</span><span id="total_least_squares-228"><a href="#total_least_squares-228"><span class="linenos">228</span></a>
+</span><span id="total_least_squares-229"><a href="#total_least_squares-229"><span class="linenos">229</span></a>    <span class="k">if</span> <span class="n">out</span><span class="o">.</span><span class="n">info</span> <span class="o">&gt;</span> <span class="mi">3</span><span class="p">:</span>
+</span><span id="total_least_squares-230"><a href="#total_least_squares-230"><span class="linenos">230</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The minimization procedure did not converge.&#39;</span><span class="p">)</span>
+</span><span id="total_least_squares-231"><a href="#total_least_squares-231"><span class="linenos">231</span></a>
+</span><span id="total_least_squares-232"><a href="#total_least_squares-232"><span class="linenos">232</span></a>    <span class="n">m</span> <span class="o">=</span> <span class="n">x_f</span><span class="o">.</span><span class="n">size</span>
+</span><span id="total_least_squares-233"><a href="#total_least_squares-233"><span class="linenos">233</span></a>
+</span><span id="total_least_squares-234"><a href="#total_least_squares-234"><span class="linenos">234</span></a>    <span class="k">def</span> <span class="nf">odr_chisquare</span><span class="p">(</span><span class="n">p</span><span class="p">):</span>
+</span><span id="total_least_squares-235"><a href="#total_least_squares-235"><span class="linenos">235</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
+</span><span id="total_least_squares-236"><a href="#total_least_squares-236"><span class="linenos">236</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">p</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="total_least_squares-237"><a href="#total_least_squares-237"><span class="linenos">237</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="total_least_squares-238"><a href="#total_least_squares-238"><span class="linenos">238</span></a>
+</span><span id="total_least_squares-239"><a href="#total_least_squares-239"><span class="linenos">239</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;expected_chisquare&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="total_least_squares-240"><a href="#total_least_squares-240"><span class="linenos">240</span></a>        <span class="n">W</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">dy_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">dx_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
+</span><span id="total_least_squares-241"><a href="#total_least_squares-241"><span class="linenos">241</span></a>
+</span><span id="total_least_squares-242"><a href="#total_least_squares-242"><span class="linenos">242</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="total_least_squares-243"><a href="#total_least_squares-243"><span class="linenos">243</span></a>            <span class="n">cov</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;covariance&#39;</span><span class="p">)</span>
+</span><span id="total_least_squares-244"><a href="#total_least_squares-244"><span class="linenos">244</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="total_least_squares-245"><a href="#total_least_squares-245"><span class="linenos">245</span></a>            <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
+</span><span id="total_least_squares-246"><a href="#total_least_squares-246"><span class="linenos">246</span></a>
+</span><span id="total_least_squares-247"><a href="#total_least_squares-247"><span class="linenos">247</span></a>        <span class="n">number_of_x_parameters</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">m</span> <span class="o">/</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="total_least_squares-248"><a href="#total_least_squares-248"><span class="linenos">248</span></a>
+</span><span id="total_least_squares-249"><a href="#total_least_squares-249"><span class="linenos">249</span></a>        <span class="n">old_jac</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">)</span>
+</span><span id="total_least_squares-250"><a href="#total_least_squares-250"><span class="linenos">250</span></a>        <span class="n">fused_row1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">old_jac</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">)]),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)))</span>
+</span><span id="total_least_squares-251"><a href="#total_least_squares-251"><span class="linenos">251</span></a>        <span class="n">fused_row2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">x</span><span class="p">))(</span><span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">x_f</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">number_of_x_parameters</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">number_of_x_parameters</span> <span class="o">*</span> <span class="n">old_jac</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])))</span>
+</span><span id="total_least_squares-252"><a href="#total_least_squares-252"><span class="linenos">252</span></a>        <span class="n">new_jac</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fused_row1</span><span class="p">,</span> <span class="n">fused_row2</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="total_least_squares-253"><a href="#total_least_squares-253"><span class="linenos">253</span></a>
+</span><span id="total_least_squares-254"><a href="#total_least_squares-254"><span class="linenos">254</span></a>        <span class="n">A</span> <span class="o">=</span> <span class="n">W</span> <span class="o">@</span> <span class="n">new_jac</span>
+</span><span id="total_least_squares-255"><a href="#total_least_squares-255"><span class="linenos">255</span></a>        <span class="n">P_phi</span> <span class="o">=</span> <span class="n">A</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">A</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">A</span><span class="p">)</span> <span class="o">@</span> <span class="n">A</span><span class="o">.</span><span class="n">T</span>
+</span><span id="total_least_squares-256"><a href="#total_least_squares-256"><span class="linenos">256</span></a>        <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">trace</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">P_phi</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">-</span> <span class="n">P_phi</span><span class="p">)</span> <span class="o">@</span> <span class="n">W</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">W</span><span class="p">)</span>
+</span><span id="total_least_squares-257"><a href="#total_least_squares-257"><span class="linenos">257</span></a>        <span class="k">if</span> <span class="n">expected_chisquare</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="total_least_squares-258"><a href="#total_least_squares-258"><span class="linenos">258</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Negative expected_chisquare.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="total_least_squares-259"><a href="#total_least_squares-259"><span class="linenos">259</span></a>            <span class="n">expected_chisquare</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">expected_chisquare</span><span class="p">)</span>
+</span><span id="total_least_squares-260"><a href="#total_least_squares-260"><span class="linenos">260</span></a>        <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span> <span class="o">/</span> <span class="n">expected_chisquare</span>
+</span><span id="total_least_squares-261"><a href="#total_least_squares-261"><span class="linenos">261</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">silent</span><span class="p">:</span>
+</span><span id="total_least_squares-262"><a href="#total_least_squares-262"><span class="linenos">262</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;chisquare/expected_chisquare:&#39;</span><span class="p">,</span>
+</span><span id="total_least_squares-263"><a href="#total_least_squares-263"><span class="linenos">263</span></a>                  <span class="n">output</span><span class="o">.</span><span class="n">chisquare_by_expected_chisquare</span><span class="p">)</span>
+</span><span id="total_least_squares-264"><a href="#total_least_squares-264"><span class="linenos">264</span></a>
+</span><span id="total_least_squares-265"><a href="#total_least_squares-265"><span class="linenos">265</span></a>    <span class="n">fitp</span> <span class="o">=</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span>
+</span><span id="total_least_squares-266"><a href="#total_least_squares-266"><span class="linenos">266</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="total_least_squares-267"><a href="#total_least_squares-267"><span class="linenos">267</span></a>        <span class="n">hess_inv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))))</span>
+</span><span id="total_least_squares-268"><a href="#total_least_squares-268"><span class="linenos">268</span></a>    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
+</span><span id="total_least_squares-269"><a href="#total_least_squares-269"><span class="linenos">269</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within fit functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="total_least_squares-270"><a href="#total_least_squares-270"><span class="linenos">270</span></a>
+</span><span id="total_least_squares-271"><a href="#total_least_squares-271"><span class="linenos">271</span></a>    <span class="k">def</span> <span class="nf">odr_chisquare_compact_x</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="total_least_squares-272"><a href="#total_least_squares-272"><span class="linenos">272</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
+</span><span id="total_least_squares-273"><a href="#total_least_squares-273"><span class="linenos">273</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">y_f</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">)</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="total_least_squares-274"><a href="#total_least_squares-274"><span class="linenos">274</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="total_least_squares-275"><a href="#total_least_squares-275"><span class="linenos">275</span></a>
+</span><span id="total_least_squares-276"><a href="#total_least_squares-276"><span class="linenos">276</span></a>    <span class="n">jac_jac_x</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_x</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">x_f</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
+</span><span id="total_least_squares-277"><a href="#total_least_squares-277"><span class="linenos">277</span></a>
+</span><span id="total_least_squares-278"><a href="#total_least_squares-278"><span class="linenos">278</span></a>    <span class="n">deriv_x</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_x</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
+</span><span id="total_least_squares-279"><a href="#total_least_squares-279"><span class="linenos">279</span></a>
+</span><span id="total_least_squares-280"><a href="#total_least_squares-280"><span class="linenos">280</span></a>    <span class="k">def</span> <span class="nf">odr_chisquare_compact_y</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="total_least_squares-281"><a href="#total_least_squares-281"><span class="linenos">281</span></a>        <span class="n">model</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">d</span><span class="p">[:</span><span class="n">n_parms</span><span class="p">],</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span>
+</span><span id="total_least_squares-282"><a href="#total_least_squares-282"><span class="linenos">282</span></a>        <span class="n">chisq</span> <span class="o">=</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">d</span><span class="p">[</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span> <span class="o">-</span> <span class="n">model</span><span class="p">)</span> <span class="o">/</span> <span class="n">dy_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">+</span> <span class="n">anp</span><span class="o">.</span><span class="n">sum</span><span class="p">(((</span><span class="n">x_f</span> <span class="o">-</span> <span class="n">d</span><span class="p">[</span><span class="n">n_parms</span><span class="p">:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">x_shape</span><span class="p">))</span> <span class="o">/</span> <span class="n">dx_f</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="total_least_squares-283"><a href="#total_least_squares-283"><span class="linenos">283</span></a>        <span class="k">return</span> <span class="n">chisq</span>
+</span><span id="total_least_squares-284"><a href="#total_least_squares-284"><span class="linenos">284</span></a>
+</span><span id="total_least_squares-285"><a href="#total_least_squares-285"><span class="linenos">285</span></a>    <span class="n">jac_jac_y</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">jacobian</span><span class="p">(</span><span class="n">odr_chisquare_compact_y</span><span class="p">))(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">fitp</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">(),</span> <span class="n">y_f</span><span class="p">)))</span>
+</span><span id="total_least_squares-286"><a href="#total_least_squares-286"><span class="linenos">286</span></a>
+</span><span id="total_least_squares-287"><a href="#total_least_squares-287"><span class="linenos">287</span></a>    <span class="n">deriv_y</span> <span class="o">=</span> <span class="o">-</span><span class="n">hess_inv</span> <span class="o">@</span> <span class="n">jac_jac_y</span><span class="p">[:</span><span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">,</span> <span class="n">n_parms</span> <span class="o">+</span> <span class="n">m</span><span class="p">:]</span>
+</span><span id="total_least_squares-288"><a href="#total_least_squares-288"><span class="linenos">288</span></a>
+</span><span id="total_least_squares-289"><a href="#total_least_squares-289"><span class="linenos">289</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="total_least_squares-290"><a href="#total_least_squares-290"><span class="linenos">290</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n_parms</span><span class="p">):</span>
+</span><span id="total_least_squares-291"><a href="#total_least_squares-291"><span class="linenos">291</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">my_var</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">my_var</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">ravel</span><span class="p">())</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">y</span><span class="p">),</span> <span class="n">man_grad</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">deriv_x</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">+</span> <span class="nb">list</span><span class="p">(</span><span class="n">deriv_y</span><span class="p">[</span><span class="n">i</span><span class="p">])))</span>
+</span><span id="total_least_squares-292"><a href="#total_least_squares-292"><span class="linenos">292</span></a>
+</span><span id="total_least_squares-293"><a href="#total_least_squares-293"><span class="linenos">293</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">fit_parameters</span> <span class="o">=</span> <span class="n">result</span>
+</span><span id="total_least_squares-294"><a href="#total_least_squares-294"><span class="linenos">294</span></a>
+</span><span id="total_least_squares-295"><a href="#total_least_squares-295"><span class="linenos">295</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span> <span class="o">=</span> <span class="n">odr_chisquare</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">((</span><span class="n">out</span><span class="o">.</span><span class="n">beta</span><span class="p">,</span> <span class="n">out</span><span class="o">.</span><span class="n">xplus</span><span class="o">.</span><span class="n">ravel</span><span class="p">())))</span>
+</span><span id="total_least_squares-296"><a href="#total_least_squares-296"><span class="linenos">296</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">dof</span> <span class="o">=</span> <span class="n">x</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">n_parms</span>
+</span><span id="total_least_squares-297"><a href="#total_least_squares-297"><span class="linenos">297</span></a>    <span class="n">output</span><span class="o">.</span><span class="n">p_value</span> <span class="o">=</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">chi2</span><span class="o">.</span><span class="n">cdf</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">odr_chisquare</span><span class="p">,</span> <span class="n">output</span><span class="o">.</span><span class="n">dof</span><span class="p">)</span>
+</span><span id="total_least_squares-298"><a href="#total_least_squares-298"><span class="linenos">298</span></a>
+</span><span id="total_least_squares-299"><a href="#total_least_squares-299"><span class="linenos">299</span></a>    <span class="k">return</span> <span class="n">output</span>
+</span></pre></div>
 
         </details>
 
@@ -1324,31 +1324,31 @@ has to be calculated (default False).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Performs a linear fit to y = n + m * x and returns two Obs n, m.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    x : list</span>
-<span class="sd">        Can either be a list of floats in which case no xerror is assumed, or</span>
-<span class="sd">        a list of Obs, where the dvalues of the Obs are used as xerror for the fit.</span>
-<span class="sd">    y : list</span>
-<span class="sd">        List of Obs, the dvalues of the Obs are used as yerror for the fit.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">f</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span>
-        <span class="n">y</span> <span class="o">=</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span>
-        <span class="k">return</span> <span class="n">y</span>
-
-    <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">):</span>
-        <span class="n">out</span> <span class="o">=</span> <span class="n">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
-    <span class="k">elif</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">int</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-        <span class="n">out</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unsupported types for x&#39;</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="fit_lin-584"><a href="#fit_lin-584"><span class="linenos">584</span></a><span class="k">def</span> <span class="nf">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="fit_lin-585"><a href="#fit_lin-585"><span class="linenos">585</span></a>    <span class="sd">&quot;&quot;&quot;Performs a linear fit to y = n + m * x and returns two Obs n, m.</span>
+</span><span id="fit_lin-586"><a href="#fit_lin-586"><span class="linenos">586</span></a>
+</span><span id="fit_lin-587"><a href="#fit_lin-587"><span class="linenos">587</span></a><span class="sd">    Parameters</span>
+</span><span id="fit_lin-588"><a href="#fit_lin-588"><span class="linenos">588</span></a><span class="sd">    ----------</span>
+</span><span id="fit_lin-589"><a href="#fit_lin-589"><span class="linenos">589</span></a><span class="sd">    x : list</span>
+</span><span id="fit_lin-590"><a href="#fit_lin-590"><span class="linenos">590</span></a><span class="sd">        Can either be a list of floats in which case no xerror is assumed, or</span>
+</span><span id="fit_lin-591"><a href="#fit_lin-591"><span class="linenos">591</span></a><span class="sd">        a list of Obs, where the dvalues of the Obs are used as xerror for the fit.</span>
+</span><span id="fit_lin-592"><a href="#fit_lin-592"><span class="linenos">592</span></a><span class="sd">    y : list</span>
+</span><span id="fit_lin-593"><a href="#fit_lin-593"><span class="linenos">593</span></a><span class="sd">        List of Obs, the dvalues of the Obs are used as yerror for the fit.</span>
+</span><span id="fit_lin-594"><a href="#fit_lin-594"><span class="linenos">594</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="fit_lin-595"><a href="#fit_lin-595"><span class="linenos">595</span></a>
+</span><span id="fit_lin-596"><a href="#fit_lin-596"><span class="linenos">596</span></a>    <span class="k">def</span> <span class="nf">f</span><span class="p">(</span><span class="n">a</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span>
+</span><span id="fit_lin-597"><a href="#fit_lin-597"><span class="linenos">597</span></a>        <span class="n">y</span> <span class="o">=</span> <span class="n">a</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span>
+</span><span id="fit_lin-598"><a href="#fit_lin-598"><span class="linenos">598</span></a>        <span class="k">return</span> <span class="n">y</span>
+</span><span id="fit_lin-599"><a href="#fit_lin-599"><span class="linenos">599</span></a>
+</span><span id="fit_lin-600"><a href="#fit_lin-600"><span class="linenos">600</span></a>    <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">):</span>
+</span><span id="fit_lin-601"><a href="#fit_lin-601"><span class="linenos">601</span></a>        <span class="n">out</span> <span class="o">=</span> <span class="n">total_least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="fit_lin-602"><a href="#fit_lin-602"><span class="linenos">602</span></a>        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
+</span><span id="fit_lin-603"><a href="#fit_lin-603"><span class="linenos">603</span></a>    <span class="k">elif</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">float</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="nb">int</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">x</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="fit_lin-604"><a href="#fit_lin-604"><span class="linenos">604</span></a>        <span class="n">out</span> <span class="o">=</span> <span class="n">least_squares</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">f</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="fit_lin-605"><a href="#fit_lin-605"><span class="linenos">605</span></a>        <span class="k">return</span> <span class="n">out</span><span class="o">.</span><span class="n">fit_parameters</span>
+</span><span id="fit_lin-606"><a href="#fit_lin-606"><span class="linenos">606</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="fit_lin-607"><a href="#fit_lin-607"><span class="linenos">607</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unsupported types for x&#39;</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -1377,31 +1377,31 @@ List of Obs, the dvalues of the Obs are used as yerror for the fit.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">p</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Generates a quantile-quantile plot of the fit result which can be used to</span>
-<span class="sd">       check if the residuals of the fit are gaussian distributed.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">residuals</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i_x</span><span class="p">,</span> <span class="n">i_y</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">):</span>
-        <span class="n">residuals</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">i_y</span> <span class="o">-</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">i_x</span><span class="p">))</span> <span class="o">/</span> <span class="n">i_y</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span>
-    <span class="n">residuals</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">residuals</span><span class="p">)</span>
-    <span class="n">my_y</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">residuals</span><span class="p">]</span>
-    <span class="n">probplot</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">probplot</span><span class="p">(</span><span class="n">my_y</span><span class="p">)</span>
-    <span class="n">my_x</span> <span class="o">=</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">my_x</span><span class="p">,</span> <span class="n">my_y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">)</span>
-    <span class="n">fit_start</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">fit_stop</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">fit_start</span><span class="p">,</span> <span class="n">fit_stop</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">11</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Standard normal distribution&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">samples</span> <span class="o">+</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Least squares fit, r=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">],</span> <span class="mi">3</span><span class="p">)),</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
-
-    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;Theoretical quantiles&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Ordered Values&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="qqplot-610"><a href="#qqplot-610"><span class="linenos">610</span></a><span class="k">def</span> <span class="nf">qqplot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">p</span><span class="p">):</span>
+</span><span id="qqplot-611"><a href="#qqplot-611"><span class="linenos">611</span></a>    <span class="sd">&quot;&quot;&quot;Generates a quantile-quantile plot of the fit result which can be used to</span>
+</span><span id="qqplot-612"><a href="#qqplot-612"><span class="linenos">612</span></a><span class="sd">       check if the residuals of the fit are gaussian distributed.</span>
+</span><span id="qqplot-613"><a href="#qqplot-613"><span class="linenos">613</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="qqplot-614"><a href="#qqplot-614"><span class="linenos">614</span></a>
+</span><span id="qqplot-615"><a href="#qqplot-615"><span class="linenos">615</span></a>    <span class="n">residuals</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="qqplot-616"><a href="#qqplot-616"><span class="linenos">616</span></a>    <span class="k">for</span> <span class="n">i_x</span><span class="p">,</span> <span class="n">i_y</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">o_y</span><span class="p">):</span>
+</span><span id="qqplot-617"><a href="#qqplot-617"><span class="linenos">617</span></a>        <span class="n">residuals</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">i_y</span> <span class="o">-</span> <span class="n">func</span><span class="p">(</span><span class="n">p</span><span class="p">,</span> <span class="n">i_x</span><span class="p">))</span> <span class="o">/</span> <span class="n">i_y</span><span class="o">.</span><span class="n">dvalue</span><span class="p">)</span>
+</span><span id="qqplot-618"><a href="#qqplot-618"><span class="linenos">618</span></a>    <span class="n">residuals</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">residuals</span><span class="p">)</span>
+</span><span id="qqplot-619"><a href="#qqplot-619"><span class="linenos">619</span></a>    <span class="n">my_y</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">residuals</span><span class="p">]</span>
+</span><span id="qqplot-620"><a href="#qqplot-620"><span class="linenos">620</span></a>    <span class="n">probplot</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">probplot</span><span class="p">(</span><span class="n">my_y</span><span class="p">)</span>
+</span><span id="qqplot-621"><a href="#qqplot-621"><span class="linenos">621</span></a>    <span class="n">my_x</span> <span class="o">=</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="qqplot-622"><a href="#qqplot-622"><span class="linenos">622</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
+</span><span id="qqplot-623"><a href="#qqplot-623"><span class="linenos">623</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">my_x</span><span class="p">,</span> <span class="n">my_y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">)</span>
+</span><span id="qqplot-624"><a href="#qqplot-624"><span class="linenos">624</span></a>    <span class="n">fit_start</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="qqplot-625"><a href="#qqplot-625"><span class="linenos">625</span></a>    <span class="n">fit_stop</span> <span class="o">=</span> <span class="n">my_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="qqplot-626"><a href="#qqplot-626"><span class="linenos">626</span></a>    <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">fit_start</span><span class="p">,</span> <span class="n">fit_stop</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
+</span><span id="qqplot-627"><a href="#qqplot-627"><span class="linenos">627</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">11</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Standard normal distribution&#39;</span><span class="p">)</span>
+</span><span id="qqplot-628"><a href="#qqplot-628"><span class="linenos">628</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">samples</span> <span class="o">+</span> <span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Least squares fit, r=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="n">probplot</span><span class="p">[</span><span class="mi">1</span><span class="p">][</span><span class="mi">2</span><span class="p">],</span> <span class="mi">3</span><span class="p">)),</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">)</span>
+</span><span id="qqplot-629"><a href="#qqplot-629"><span class="linenos">629</span></a>
+</span><span id="qqplot-630"><a href="#qqplot-630"><span class="linenos">630</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;Theoretical quantiles&#39;</span><span class="p">)</span>
+</span><span id="qqplot-631"><a href="#qqplot-631"><span class="linenos">631</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Ordered Values&#39;</span><span class="p">)</span>
+</span><span id="qqplot-632"><a href="#qqplot-632"><span class="linenos">632</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="qqplot-633"><a href="#qqplot-633"><span class="linenos">633</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span></pre></div>
 
         </details>
 
@@ -1421,35 +1421,35 @@ check if the residuals of the fit are gaussian distributed.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">fit_res</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Generates a plot which compares the fit to the data and displays the corresponding residuals&quot;&quot;&quot;</span>
-    <span class="n">sorted_x</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
-    <span class="n">xstart</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="n">xstop</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
-    <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span> <span class="o">+</span> <span class="mf">0.01</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
-
-    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
-    <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
-    <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Data&#39;</span><span class="p">)</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Fit&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">ms</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
-    <span class="n">ax0</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-
-    <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-    <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
-    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">subplots_adjust</span><span class="p">(</span><span class="n">wspace</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="residual_plot-636"><a href="#residual_plot-636"><span class="linenos">636</span></a><span class="k">def</span> <span class="nf">residual_plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">fit_res</span><span class="p">):</span>
+</span><span id="residual_plot-637"><a href="#residual_plot-637"><span class="linenos">637</span></a>    <span class="sd">&quot;&quot;&quot; Generates a plot which compares the fit to the data and displays the corresponding residuals&quot;&quot;&quot;</span>
+</span><span id="residual_plot-638"><a href="#residual_plot-638"><span class="linenos">638</span></a>    <span class="n">sorted_x</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
+</span><span id="residual_plot-639"><a href="#residual_plot-639"><span class="linenos">639</span></a>    <span class="n">xstart</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="residual_plot-640"><a href="#residual_plot-640"><span class="linenos">640</span></a>    <span class="n">xstop</span> <span class="o">=</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">sorted_x</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span>
+</span><span id="residual_plot-641"><a href="#residual_plot-641"><span class="linenos">641</span></a>    <span class="n">x_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span> <span class="o">+</span> <span class="mf">0.01</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
+</span><span id="residual_plot-642"><a href="#residual_plot-642"><span class="linenos">642</span></a>
+</span><span id="residual_plot-643"><a href="#residual_plot-643"><span class="linenos">643</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">(</span><span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">8</span><span class="p">,</span> <span class="mi">8</span> <span class="o">/</span> <span class="mf">1.618</span><span class="p">))</span>
+</span><span id="residual_plot-644"><a href="#residual_plot-644"><span class="linenos">644</span></a>    <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
+</span><span id="residual_plot-645"><a href="#residual_plot-645"><span class="linenos">645</span></a>    <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="residual_plot-646"><a href="#residual_plot-646"><span class="linenos">646</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">],</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">3</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Data&#39;</span><span class="p">)</span>
+</span><span id="residual_plot-647"><a href="#residual_plot-647"><span class="linenos">647</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x_samples</span><span class="p">),</span> <span class="n">label</span><span class="o">=</span><span class="s1">&#39;Fit&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;-&#39;</span><span class="p">,</span> <span class="n">ms</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="residual_plot-648"><a href="#residual_plot-648"><span class="linenos">648</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
+</span><span id="residual_plot-649"><a href="#residual_plot-649"><span class="linenos">649</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
+</span><span id="residual_plot-650"><a href="#residual_plot-650"><span class="linenos">650</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">set_xticklabels</span><span class="p">([])</span>
+</span><span id="residual_plot-651"><a href="#residual_plot-651"><span class="linenos">651</span></a>    <span class="n">ax0</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="residual_plot-652"><a href="#residual_plot-652"><span class="linenos">652</span></a>
+</span><span id="residual_plot-653"><a href="#residual_plot-653"><span class="linenos">653</span></a>    <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="n">func</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">],</span> <span class="n">x</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="residual_plot-654"><a href="#residual_plot-654"><span class="linenos">654</span></a>    <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="residual_plot-655"><a href="#residual_plot-655"><span class="linenos">655</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+</span><span id="residual_plot-656"><a href="#residual_plot-656"><span class="linenos">656</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
+</span><span id="residual_plot-657"><a href="#residual_plot-657"><span class="linenos">657</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="residual_plot-658"><a href="#residual_plot-658"><span class="linenos">658</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
+</span><span id="residual_plot-659"><a href="#residual_plot-659"><span class="linenos">659</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">x_samples</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
+</span><span id="residual_plot-660"><a href="#residual_plot-660"><span class="linenos">660</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">([</span><span class="n">xstart</span><span class="p">,</span> <span class="n">xstop</span><span class="p">])</span>
+</span><span id="residual_plot-661"><a href="#residual_plot-661"><span class="linenos">661</span></a>    <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
+</span><span id="residual_plot-662"><a href="#residual_plot-662"><span class="linenos">662</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">subplots_adjust</span><span class="p">(</span><span class="n">wspace</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="kc">None</span><span class="p">)</span>
+</span><span id="residual_plot-663"><a href="#residual_plot-663"><span class="linenos">663</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span></pre></div>
 
         </details>
 
@@ -1468,23 +1468,23 @@ check if the residuals of the fit are gaussian distributed.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">error_band</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">beta</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Returns the error band for an array of sample values x, for given fit function func with optimized parameters beta.&quot;&quot;&quot;</span>
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">beta</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">cov</span> <span class="o">-</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1000</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not symmetric within floating point precision&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">deriv</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-        <span class="n">deriv</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">egrad</span><span class="p">(</span><span class="n">func</span><span class="p">)([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">beta</span><span class="p">],</span> <span class="n">item</span><span class="p">)))</span>
-
-    <span class="n">err</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-        <span class="n">err</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
-    <span class="n">err</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">err</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">err</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="error_band-666"><a href="#error_band-666"><span class="linenos">666</span></a><span class="k">def</span> <span class="nf">error_band</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">beta</span><span class="p">):</span>
+</span><span id="error_band-667"><a href="#error_band-667"><span class="linenos">667</span></a>    <span class="sd">&quot;&quot;&quot;Returns the error band for an array of sample values x, for given fit function func with optimized parameters beta.&quot;&quot;&quot;</span>
+</span><span id="error_band-668"><a href="#error_band-668"><span class="linenos">668</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">covariance</span><span class="p">(</span><span class="n">beta</span><span class="p">)</span>
+</span><span id="error_band-669"><a href="#error_band-669"><span class="linenos">669</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">cov</span> <span class="o">-</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1000</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">):</span>
+</span><span id="error_band-670"><a href="#error_band-670"><span class="linenos">670</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not symmetric within floating point precision&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="error_band-671"><a href="#error_band-671"><span class="linenos">671</span></a>
+</span><span id="error_band-672"><a href="#error_band-672"><span class="linenos">672</span></a>    <span class="n">deriv</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="error_band-673"><a href="#error_band-673"><span class="linenos">673</span></a>    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="error_band-674"><a href="#error_band-674"><span class="linenos">674</span></a>        <span class="n">deriv</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">egrad</span><span class="p">(</span><span class="n">func</span><span class="p">)([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">beta</span><span class="p">],</span> <span class="n">item</span><span class="p">)))</span>
+</span><span id="error_band-675"><a href="#error_band-675"><span class="linenos">675</span></a>
+</span><span id="error_band-676"><a href="#error_band-676"><span class="linenos">676</span></a>    <span class="n">err</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="error_band-677"><a href="#error_band-677"><span class="linenos">677</span></a>    <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="error_band-678"><a href="#error_band-678"><span class="linenos">678</span></a>        <span class="n">err</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
+</span><span id="error_band-679"><a href="#error_band-679"><span class="linenos">679</span></a>    <span class="n">err</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">err</span><span class="p">)</span>
+</span><span id="error_band-680"><a href="#error_band-680"><span class="linenos">680</span></a>
+</span><span id="error_band-681"><a href="#error_band-681"><span class="linenos">681</span></a>    <span class="k">return</span> <span class="n">err</span>
+</span></pre></div>
 
         </details>
 
@@ -1503,45 +1503,45 @@ check if the residuals of the fit are gaussian distributed.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">ks_test</span><span class="p">(</span><span class="n">objects</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Performs a Kolmogorov–Smirnov test for the p-values of all fit object.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    objects : list</span>
-<span class="sd">        List of fit results to include in the analysis (optional).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="n">objects</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">obs_list</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">obj</span> <span class="ow">in</span> <span class="n">gc</span><span class="o">.</span><span class="n">get_objects</span><span class="p">():</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">Fit_result</span><span class="p">):</span>
-                <span class="n">obs_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">obs_list</span> <span class="o">=</span> <span class="n">objects</span>
-
-    <span class="n">p_values</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">p_value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">]</span>
-
-    <span class="n">bins</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
-    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mf">1.001</span><span class="p">,</span> <span class="mf">0.001</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;p-value&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Cumulative probability&#39;</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; p-values&#39;</span><span class="p">)</span>
-
-    <span class="n">n</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">bins</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span>
-    <span class="n">Xs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">step</span><span class="p">(</span><span class="n">Xs</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
-    <span class="n">diffs</span> <span class="o">=</span> <span class="n">n</span> <span class="o">-</span> <span class="n">Xs</span>
-    <span class="n">loc_max_diff</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">diffs</span><span class="p">))</span>
-    <span class="n">loc</span> <span class="o">=</span> <span class="n">Xs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">annotate</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">xy</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span><span class="p">),</span> <span class="n">xytext</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span> <span class="o">+</span> <span class="n">diffs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]),</span> <span class="n">arrowprops</span><span class="o">=</span><span class="nb">dict</span><span class="p">(</span><span class="n">arrowstyle</span><span class="o">=</span><span class="s1">&#39;&lt;-&gt;&#39;</span><span class="p">,</span> <span class="n">shrinkA</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">shrinkB</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span>
-    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">kstest</span><span class="p">(</span><span class="n">p_values</span><span class="p">,</span> <span class="s1">&#39;uniform&#39;</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="ks_test-684"><a href="#ks_test-684"><span class="linenos">684</span></a><span class="k">def</span> <span class="nf">ks_test</span><span class="p">(</span><span class="n">objects</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="ks_test-685"><a href="#ks_test-685"><span class="linenos">685</span></a>    <span class="sd">&quot;&quot;&quot;Performs a Kolmogorov–Smirnov test for the p-values of all fit object.</span>
+</span><span id="ks_test-686"><a href="#ks_test-686"><span class="linenos">686</span></a>
+</span><span id="ks_test-687"><a href="#ks_test-687"><span class="linenos">687</span></a><span class="sd">    Parameters</span>
+</span><span id="ks_test-688"><a href="#ks_test-688"><span class="linenos">688</span></a><span class="sd">    ----------</span>
+</span><span id="ks_test-689"><a href="#ks_test-689"><span class="linenos">689</span></a><span class="sd">    objects : list</span>
+</span><span id="ks_test-690"><a href="#ks_test-690"><span class="linenos">690</span></a><span class="sd">        List of fit results to include in the analysis (optional).</span>
+</span><span id="ks_test-691"><a href="#ks_test-691"><span class="linenos">691</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="ks_test-692"><a href="#ks_test-692"><span class="linenos">692</span></a>
+</span><span id="ks_test-693"><a href="#ks_test-693"><span class="linenos">693</span></a>    <span class="k">if</span> <span class="n">objects</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="ks_test-694"><a href="#ks_test-694"><span class="linenos">694</span></a>        <span class="n">obs_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="ks_test-695"><a href="#ks_test-695"><span class="linenos">695</span></a>        <span class="k">for</span> <span class="n">obj</span> <span class="ow">in</span> <span class="n">gc</span><span class="o">.</span><span class="n">get_objects</span><span class="p">():</span>
+</span><span id="ks_test-696"><a href="#ks_test-696"><span class="linenos">696</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">Fit_result</span><span class="p">):</span>
+</span><span id="ks_test-697"><a href="#ks_test-697"><span class="linenos">697</span></a>                <span class="n">obs_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+</span><span id="ks_test-698"><a href="#ks_test-698"><span class="linenos">698</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="ks_test-699"><a href="#ks_test-699"><span class="linenos">699</span></a>        <span class="n">obs_list</span> <span class="o">=</span> <span class="n">objects</span>
+</span><span id="ks_test-700"><a href="#ks_test-700"><span class="linenos">700</span></a>
+</span><span id="ks_test-701"><a href="#ks_test-701"><span class="linenos">701</span></a>    <span class="n">p_values</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">p_value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">]</span>
+</span><span id="ks_test-702"><a href="#ks_test-702"><span class="linenos">702</span></a>
+</span><span id="ks_test-703"><a href="#ks_test-703"><span class="linenos">703</span></a>    <span class="n">bins</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
+</span><span id="ks_test-704"><a href="#ks_test-704"><span class="linenos">704</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mf">1.001</span><span class="p">,</span> <span class="mf">0.001</span><span class="p">)</span>
+</span><span id="ks_test-705"><a href="#ks_test-705"><span class="linenos">705</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">x</span><span class="p">,</span> <span class="s1">&#39;k&#39;</span><span class="p">,</span> <span class="n">zorder</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="ks_test-706"><a href="#ks_test-706"><span class="linenos">706</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="ks_test-707"><a href="#ks_test-707"><span class="linenos">707</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="ks_test-708"><a href="#ks_test-708"><span class="linenos">708</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;p-value&#39;</span><span class="p">)</span>
+</span><span id="ks_test-709"><a href="#ks_test-709"><span class="linenos">709</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Cumulative probability&#39;</span><span class="p">)</span>
+</span><span id="ks_test-710"><a href="#ks_test-710"><span class="linenos">710</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; p-values&#39;</span><span class="p">)</span>
+</span><span id="ks_test-711"><a href="#ks_test-711"><span class="linenos">711</span></a>
+</span><span id="ks_test-712"><a href="#ks_test-712"><span class="linenos">712</span></a>    <span class="n">n</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">bins</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">(</span><span class="n">bins</span><span class="p">)</span>
+</span><span id="ks_test-713"><a href="#ks_test-713"><span class="linenos">713</span></a>    <span class="n">Xs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">p_values</span><span class="p">)</span>
+</span><span id="ks_test-714"><a href="#ks_test-714"><span class="linenos">714</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">step</span><span class="p">(</span><span class="n">Xs</span><span class="p">,</span> <span class="n">n</span><span class="p">)</span>
+</span><span id="ks_test-715"><a href="#ks_test-715"><span class="linenos">715</span></a>    <span class="n">diffs</span> <span class="o">=</span> <span class="n">n</span> <span class="o">-</span> <span class="n">Xs</span>
+</span><span id="ks_test-716"><a href="#ks_test-716"><span class="linenos">716</span></a>    <span class="n">loc_max_diff</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">diffs</span><span class="p">))</span>
+</span><span id="ks_test-717"><a href="#ks_test-717"><span class="linenos">717</span></a>    <span class="n">loc</span> <span class="o">=</span> <span class="n">Xs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]</span>
+</span><span id="ks_test-718"><a href="#ks_test-718"><span class="linenos">718</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">annotate</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">xy</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span><span class="p">),</span> <span class="n">xytext</span><span class="o">=</span><span class="p">(</span><span class="n">loc</span><span class="p">,</span> <span class="n">loc</span> <span class="o">+</span> <span class="n">diffs</span><span class="p">[</span><span class="n">loc_max_diff</span><span class="p">]),</span> <span class="n">arrowprops</span><span class="o">=</span><span class="nb">dict</span><span class="p">(</span><span class="n">arrowstyle</span><span class="o">=</span><span class="s1">&#39;&lt;-&gt;&#39;</span><span class="p">,</span> <span class="n">shrinkA</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">shrinkB</span><span class="o">=</span><span class="mi">0</span><span class="p">))</span>
+</span><span id="ks_test-719"><a href="#ks_test-719"><span class="linenos">719</span></a>    <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="ks_test-720"><a href="#ks_test-720"><span class="linenos">720</span></a>
+</span><span id="ks_test-721"><a href="#ks_test-721"><span class="linenos">721</span></a>    <span class="nb">print</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">stats</span><span class="o">.</span><span class="n">kstest</span><span class="p">(</span><span class="n">p_values</span><span class="p">,</span> <span class="s1">&#39;uniform&#39;</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input.html b/docs/pyerrors/input.html
index 5517ce83..702e6295 100644
--- a/docs/pyerrors/input.html
+++ b/docs/pyerrors/input.html
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     <title>pyerrors.input API documentation</title>
 
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@@ -51,18 +51,18 @@
 
         <h2>Submodules</h2>
         <ul>
-                <li><a href="input/bdio.html">pyerrors.input.bdio</a></li>
-                <li><a href="input/hadrons.html">pyerrors.input.hadrons</a></li>
-                <li><a href="input/json.html">pyerrors.input.json</a></li>
-                <li><a href="input/misc.html">pyerrors.input.misc</a></li>
-                <li><a href="input/openQCD.html">pyerrors.input.openQCD</a></li>
-                <li><a href="input/sfcf.html">pyerrors.input.sfcf</a></li>
-                <li><a href="input/utils.html">pyerrors.input.utils</a></li>
+                <li><a href="input/bdio.html">bdio</a></li>
+                <li><a href="input/hadrons.html">hadrons</a></li>
+                <li><a href="input/json.html">json</a></li>
+                <li><a href="input/misc.html">misc</a></li>
+                <li><a href="input/openQCD.html">openQCD</a></li>
+                <li><a href="input/sfcf.html">sfcf</a></li>
+                <li><a href="input/utils.html">utils</a></li>
         </ul>
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
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                 src="data:image/svg+xml,%3Csvg%20xmlns%3D%22http%3A//www.w3.org/2000/svg%22%20role%3D%22img%22%20aria-label%3D%22pdoc%20logo%22%20width%3D%22300%22%20height%3D%22150%22%20viewBox%3D%22-1%200%2060%2030%22%3E%3Ctitle%3Epdoc%3C/title%3E%3Cpath%20d%3D%22M29.621%2021.293c-.011-.273-.214-.475-.511-.481a.5.5%200%200%200-.489.503l-.044%201.393c-.097.551-.695%201.215-1.566%201.704-.577.428-1.306.486-2.193.182-1.426-.617-2.467-1.654-3.304-2.487l-.173-.172a3.43%203.43%200%200%200-.365-.306.49.49%200%200%200-.286-.196c-1.718-1.06-4.931-1.47-7.353.191l-.219.15c-1.707%201.187-3.413%202.131-4.328%201.03-.02-.027-.49-.685-.141-1.763.233-.721.546-2.408.772-4.076.042-.09.067-.187.046-.288.166-1.347.277-2.625.241-3.351%201.378-1.008%202.271-2.586%202.271-4.362%200-.976-.272-1.935-.788-2.774-.057-.094-.122-.18-.184-.268.033-.167.052-.339.052-.516%200-1.477-1.202-2.679-2.679-2.679-.791%200-1.496.352-1.987.9a6.3%206.3%200%200%200-1.001.029c-.492-.564-1.207-.929-2.012-.929-1.477%200-2.679%201.202-2.679%202.679A2.65%202.65%200%200%200%20.97%206.554c-.383.747-.595%201.572-.595%202.41%200%202.311%201.507%204.29%203.635%205.107-.037.699-.147%202.27-.423%203.294l-.137.461c-.622%202.042-2.515%208.257%201.727%2010.643%201.614.908%203.06%201.248%204.317%201.248%202.665%200%204.492-1.524%205.322-2.401%201.476-1.559%202.886-1.854%206.491.82%201.877%201.393%203.514%201.753%204.861%201.068%202.223-1.713%202.811-3.867%203.399-6.374.077-.846.056-1.469.054-1.537zm-4.835%204.313c-.054.305-.156.586-.242.629-.034-.007-.131-.022-.307-.157-.145-.111-.314-.478-.456-.908.221.121.432.25.675.355.115.039.219.051.33.081zm-2.251-1.238c-.05.33-.158.648-.252.694-.022.001-.125-.018-.307-.157-.217-.166-.488-.906-.639-1.573.358.344.754.693%201.198%201.036zm-3.887-2.337c-.006-.116-.018-.231-.041-.342.635.145%201.189.368%201.599.625.097.231.166.481.174.642-.03.049-.055.101-.067.158-.046.013-.128.026-.298.004-.278-.037-.901-.57-1.367-1.087zm-1.127-.497c.116.306.176.625.12.71-.019.014-.117.045-.345.016-.206-.027-.604-.332-.986-.695.41-.051.816-.056%201.211-.031zm-4.535%201.535c.209.22.379.47.358.598-.006.041-.088.138-.351.234-.144.055-.539-.063-.979-.259a11.66%2011.66%200%200%200%20.972-.573zm.983-.664c.359-.237.738-.418%201.126-.554.25.237.479.548.457.694-.006.042-.087.138-.351.235-.174.064-.694-.105-1.232-.375zm-3.381%201.794c-.022.145-.061.29-.149.401-.133.166-.358.248-.69.251h-.002c-.133%200-.306-.26-.45-.621.417.091.854.07%201.291-.031zm-2.066-8.077a4.78%204.78%200%200%201-.775-.584c.172-.115.505-.254.88-.378l-.105.962zm-.331%202.302a10.32%2010.32%200%200%201-.828-.502c.202-.143.576-.328.984-.49l-.156.992zm-.45%202.157l-.701-.403c.214-.115.536-.249.891-.376a11.57%2011.57%200%200%201-.19.779zm-.181%201.716c.064.398.194.702.298.893-.194-.051-.435-.162-.736-.398.061-.119.224-.3.438-.495zM8.87%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zm-.735-.389a1.15%201.15%200%200%200-.314.783%201.16%201.16%200%200%200%201.162%201.162c.457%200%20.842-.27%201.032-.653.026.117.042.238.042.362a1.68%201.68%200%200%201-1.679%201.679%201.68%201.68%200%200%201-1.679-1.679c0-.843.626-1.535%201.436-1.654zM5.059%205.406A1.68%201.68%200%200%201%203.38%207.085a1.68%201.68%200%200%201-1.679-1.679c0-.037.009-.072.011-.109.21.3.541.508.935.508a1.16%201.16%200%200%200%201.162-1.162%201.14%201.14%200%200%200-.474-.912c.015%200%20.03-.005.045-.005.926.001%201.679.754%201.679%201.68zM3.198%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zM1.375%208.964c0-.52.103-1.035.288-1.52.466.394%201.06.64%201.717.64%201.144%200%202.116-.725%202.499-1.738.383%201.012%201.355%201.738%202.499%201.738.867%200%201.631-.421%202.121-1.062.307.605.478%201.267.478%201.942%200%202.486-2.153%204.51-4.801%204.51s-4.801-2.023-4.801-4.51zm24.342%2019.349c-.985.498-2.267.168-3.813-.979-3.073-2.281-5.453-3.199-7.813-.705-1.315%201.391-4.163%203.365-8.423.97-3.174-1.786-2.239-6.266-1.261-9.479l.146-.492c.276-1.02.395-2.457.444-3.268a6.11%206.11%200%200%200%201.18.115%206.01%206.01%200%200%200%202.536-.562l-.006.175c-.802.215-1.848.612-2.021%201.25-.079.295.021.601.274.837.219.203.415.364.598.501-.667.304-1.243.698-1.311%201.179-.02.144-.022.507.393.787.213.144.395.26.564.365-1.285.521-1.361.96-1.381%201.126-.018.142-.011.496.427.746l.854.489c-.473.389-.971.914-.999%201.429-.018.278.095.532.316.713.675.556%201.231.721%201.653.721.059%200%20.104-.014.158-.02.207.707.641%201.64%201.513%201.64h.013c.8-.008%201.236-.345%201.462-.626.173-.216.268-.457.325-.692.424.195.93.374%201.372.374.151%200%20.294-.021.423-.068.732-.27.944-.704.993-1.021.009-.061.003-.119.002-.179.266.086.538.147.789.147.15%200%20.294-.021.423-.069.542-.2.797-.489.914-.754.237.147.478.258.704.288.106.014.205.021.296.021.356%200%20.595-.101.767-.229.438.435%201.094.992%201.656%201.067.106.014.205.021.296.021a1.56%201.56%200%200%200%20.323-.035c.17.575.453%201.289.866%201.605.358.273.665.362.914.362a.99.99%200%200%200%20.421-.093%201.03%201.03%200%200%200%20.245-.164c.168.42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@@ -84,20 +84,20 @@ See <code><a href="obs.html#Obs.export_jackknife">pyerrors.obs.Obs.export_jackkn
 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="sa">r</span><span class="sd">&#39;&#39;&#39;</span>
-<span class="sd">`pyerrors` includes an `input` submodule in which input routines and parsers for the output of various numerical programs are contained.</span>
-
-<span class="sd"># Jackknife samples</span>
-<span class="sd">For comparison with other analysis workflows `pyerrors` can also generate jackknife samples from an `Obs` object or import jackknife samples into an `Obs` object.</span>
-<span class="sd">See `pyerrors.obs.Obs.export_jackknife` and `pyerrors.obs.import_jackknife` for details.</span>
-<span class="sd">&#39;&#39;&#39;</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">bdio</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">hadrons</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">json</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">misc</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">openQCD</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">sfcf</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos"> 0</span></a><span class="sa">r</span><span class="sd">&#39;&#39;&#39;</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos"> 1</span></a><span class="sd">`pyerrors` includes an `input` submodule in which input routines and parsers for the output of various numerical programs are contained.</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos"> 2</span></a>
+</span><span id="L-3"><a href="#L-3"><span class="linenos"> 3</span></a><span class="sd"># Jackknife samples</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos"> 4</span></a><span class="sd">For comparison with other analysis workflows `pyerrors` can also generate jackknife samples from an `Obs` object or import jackknife samples into an `Obs` object.</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a><span class="sd">See `pyerrors.obs.Obs.export_jackknife` and `pyerrors.obs.import_jackknife` for details.</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="sd">&#39;&#39;&#39;</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">bdio</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">hadrons</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">json</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos">10</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">misc</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos">11</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">openQCD</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos">12</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">sfcf</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input/bdio.html b/docs/pyerrors/input/bdio.html
index e8bd6210..2db932b6 100644
--- a/docs/pyerrors/input/bdio.html
+++ b/docs/pyerrors/input/bdio.html
@@ -3,14 +3,14 @@
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     <title>pyerrors.input.bdio API documentation</title>
 
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@@ -63,7 +63,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
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src="data:image/svg+xml,%3Csvg%20xmlns%3D%22http%3A//www.w3.org/2000/svg%22%20role%3D%22img%22%20aria-label%3D%22pdoc%20logo%22%20width%3D%22300%22%20height%3D%22150%22%20viewBox%3D%22-1%200%2060%2030%22%3E%3Ctitle%3Epdoc%3C/title%3E%3Cpath%20d%3D%22M29.621%2021.293c-.011-.273-.214-.475-.511-.481a.5.5%200%200%200-.489.503l-.044%201.393c-.097.551-.695%201.215-1.566%201.704-.577.428-1.306.486-2.193.182-1.426-.617-2.467-1.654-3.304-2.487l-.173-.172a3.43%203.43%200%200%200-.365-.306.49.49%200%200%200-.286-.196c-1.718-1.06-4.931-1.47-7.353.191l-.219.15c-1.707%201.187-3.413%202.131-4.328%201.03-.02-.027-.49-.685-.141-1.763.233-.721.546-2.408.772-4.076.042-.09.067-.187.046-.288.166-1.347.277-2.625.241-3.351%201.378-1.008%202.271-2.586%202.271-4.362%200-.976-.272-1.935-.788-2.774-.057-.094-.122-.18-.184-.268.033-.167.052-.339.052-.516%200-1.477-1.202-2.679-2.679-2.679-.791%200-1.496.352-1.987.9a6.3%206.3%200%200%200-1.001.029c-.492-.564-1.207-.929-2.012-.929-1.477%200-2.679%201.202-2.679%202.679A2.65%202.65%200%200%200%20.97%206.554c-.383.747-.595%201.572-.595%202.41%200%202.311%201.507%204.29%203.635%205.107-.037.699-.147%202.27-.423%203.294l-.137.461c-.622%202.042-2.515%208.257%201.727%2010.643%201.614.908%203.06%201.248%204.317%201.248%202.665%200%204.492-1.524%205.322-2.401%201.476-1.559%202.886-1.854%206.491.82%201.877%201.393%203.514%201.753%204.861%201.068%202.223-1.713%202.811-3.867%203.399-6.374.077-.846.056-1.469.054-1.537zm-4.835%204.313c-.054.305-.156.586-.242.629-.034-.007-.131-.022-.307-.157-.145-.111-.314-.478-.456-.908.221.121.432.25.675.355.115.039.219.051.33.081zm-2.251-1.238c-.05.33-.158.648-.252.694-.022.001-.125-.018-.307-.157-.217-.166-.488-.906-.639-1.573.358.344.754.693%201.198%201.036zm-3.887-2.337c-.006-.116-.018-.231-.041-.342.635.145%201.189.368%201.599.625.097.231.166.481.174.642-.03.049-.055.101-.067.158-.046.013-.128.026-.298.004-.278-.037-.901-.57-1.367-1.087zm-1.127-.497c.116.306.176.625.12.71-.019.014-.117.045-.345.016-.206-.027-.604-.332-.986-.695.41-.051.816-.056%201.211-.031zm-4.535%201.535c.209.22.379.47.358.598-.006.041-.088.138-.351.234-.144.055-.539-.063-.979-.259a11.66%2011.66%200%200%200%20.972-.573zm.983-.664c.359-.237.738-.418%201.126-.554.25.237.479.548.457.694-.006.042-.087.138-.351.235-.174.064-.694-.105-1.232-.375zm-3.381%201.794c-.022.145-.061.29-.149.401-.133.166-.358.248-.69.251h-.002c-.133%200-.306-.26-.45-.621.417.091.854.07%201.291-.031zm-2.066-8.077a4.78%204.78%200%200%201-.775-.584c.172-.115.505-.254.88-.378l-.105.962zm-.331%202.302a10.32%2010.32%200%200%201-.828-.502c.202-.143.576-.328.984-.49l-.156.992zm-.45%202.157l-.701-.403c.214-.115.536-.249.891-.376a11.57%2011.57%200%200%201-.19.779zm-.181%201.716c.064.398.194.702.298.893-.194-.051-.435-.162-.736-.398.061-.119.224-.3.438-.495zM8.87%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zm-.735-.389a1.15%201.15%200%200%200-.314.783%201.16%201.16%200%200%200%201.162%201.162c.457%200%20.842-.27%201.032-.653.026.117.042.238.042.362a1.68%201.68%200%200%201-1.679%201.679%201.68%201.68%200%200%201-1.679-1.679c0-.843.626-1.535%201.436-1.654zM5.059%205.406A1.68%201.68%200%200%201%203.38%207.085a1.68%201.68%200%200%201-1.679-1.679c0-.037.009-.072.011-.109.21.3.541.508.935.508a1.16%201.16%200%200%200%201.162-1.162%201.14%201.14%200%200%200-.474-.912c.015%200%20.03-.005.045-.005.926.001%201.679.754%201.679%201.68zM3.198%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zM1.375%208.964c0-.52.103-1.035.288-1.52.466.394%201.06.64%201.717.64%201.144%200%202.116-.725%202.499-1.738.383%201.012%201.355%201.738%202.499%201.738.867%200%201.631-.421%202.121-1.062.307.605.478%201.267.478%201.942%200%202.486-2.153%204.51-4.801%204.51s-4.801-2.023-4.801-4.51zm24.342%2019.349c-.985.498-2.267.168-3.813-.979-3.073-2.281-5.453-3.199-7.813-.705-1.315%201.391-4.163%203.365-8.423.97-3.174-1.786-2.239-6.266-1.261-9.479l.146-.492c.276-1.02.395-2.457.444-3.268a6.11%206.11%200%200%200%201.18.115%206.01%206.01%200%200%200%202.536-.562l-.006.175c-.802.215-1.848.612-2.021%201.25-.079.295.021.601.274.837.219.203.415.364.598.501-.667.304-1.243.698-1.311%201.179-.02.144-.022.507.393.787.213.144.395.26.564.365-1.285.521-1.361.96-1.381%201.126-.018.142-.011.496.427.746l.854.489c-.473.389-.971.914-.999%201.429-.018.278.095.532.316.713.675.556%201.231.721%201.653.721.059%200%20.104-.014.158-.02.207.707.641%201.64%201.513%201.64h.013c.8-.008%201.236-.345%201.462-.626.173-.216.268-.457.325-.692.424.195.93.374%201.372.374.151%200%20.294-.021.423-.068.732-.27.944-.704.993-1.021.009-.061.003-.119.002-.179.266.086.538.147.789.147.15%200%20.294-.021.423-.069.542-.2.797-.489.914-.754.237.147.478.258.704.288.106.014.205.021.296.021.356%200%20.595-.101.767-.229.438.435%201.094.992%201.656%201.067.106.014.205.021.296.021a1.56%201.56%200%200%200%20.323-.035c.17.575.453%201.289.866%201.605.358.273.665.362.914.362a.99.99%200%200%200%20.421-.093%201.03%201.03%200%200%200%20.245-.164c.168.42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@@ -78,686 +78,686 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">ctypes</span>
-<span class="kn">import</span> <span class="nn">hashlib</span>
-<span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
-<span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
-
-
-<span class="k">def</span> <span class="nf">read_ADerrors</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Extract generic MCMC data from a bdio file</span>
-
-<span class="sd">    read_ADerrors requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path -- path to the bdio file</span>
-<span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_int32</span>
-    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
-    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="kc">None</span><span class="p">)</span>
-
-    <span class="n">return_list</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
-    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">7</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;MD5sum found&#39;</span><span class="p">)</span>  <span class="c1"># For now we just ignore these entries and do not perform any checks on them</span>
-            <span class="k">continue</span>
-
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="c1"># EOF reached</span>
-            <span class="k">break</span>
-        <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">read_c_double</span><span class="p">():</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
-
-        <span class="n">mean</span> <span class="o">=</span> <span class="n">read_c_double</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;mean&#39;</span><span class="p">,</span> <span class="n">mean</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">read_c_size_t</span><span class="p">():</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_read_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
-
-        <span class="n">neid</span> <span class="o">=</span> <span class="n">read_c_size_t</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;neid&#39;</span><span class="p">,</span> <span class="n">neid</span><span class="p">)</span>
-
-        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">ndata</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
-
-        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">nrep</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
-
-        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">vrep</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">for</span> <span class="n">jndex</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrep</span><span class="p">[</span><span class="n">index</span><span class="p">]):</span>
-                <span class="n">vrep</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
-
-        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
-
-        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
-
-        <span class="n">zero</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">zero</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
-
-        <span class="n">four</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">four</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
-
-        <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)</span>
-        <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-        <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-        <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-        <span class="n">delta</span> <span class="o">=</span> <span class="n">pd_buf</span><span class="p">[:]</span>
-
-        <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">delta</span><span class="p">)</span> <span class="o">+</span> <span class="n">mean</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">([</span><span class="n">a</span> <span class="k">for</span> <span class="n">su</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">su</span><span class="p">])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-        <span class="n">no_reps</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">no_reps</span><span class="p">)</span>
-        <span class="n">tmp_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">loc_id</span><span class="p">,</span> <span class="n">reps</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">ids</span><span class="p">,</span> <span class="n">no_reps</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">reps</span><span class="p">):</span>
-                <span class="n">missing_chars</span> <span class="o">=</span> <span class="n">ens_length</span> <span class="o">-</span> <span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">))</span>
-                <span class="n">tmp_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="n">missing_chars</span> <span class="o">+</span> <span class="s1">&#39;|r&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">{0:03d}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">index</span><span class="p">))</span>
-
-        <span class="n">return_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">tmp_names</span><span class="p">))</span>
-
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">()</span>
-    <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">return_list</span><span class="p">),</span> <span class="s1">&#39;observable(s) extracted.&#39;</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">return_list</span>
-
-
-<span class="k">def</span> <span class="nf">write_ADerrors</span><span class="p">(</span><span class="n">obs_list</span><span class="p">,</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Write Obs to a bdio file according to ADerrors conventions</span>
-
-<span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path -- path to the bdio file</span>
-<span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="s1">&#39;e_names&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first for all obs.&#39;</span><span class="p">)</span>
-
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_start_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_start_record</span>
-    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_flush_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_flush_record</span>
-    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">argytpes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_write_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_f64</span>
-    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_write_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_int32</span>
-    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">write</span> <span class="o">=</span> <span class="s1">&#39;w&#39;</span>
-    <span class="n">b_write</span> <span class="o">=</span> <span class="n">write</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;pyerrors ADerror export&#39;</span>
-    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_write</span><span class="p">),</span> <span class="n">b_form</span><span class="p">)</span>
-
-    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
-        <span class="c1"># mean = obs.value</span>
-        <span class="n">neid</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span>
-        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span>
-        <span class="n">vrep_write</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]</span>
-        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
-        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
-        <span class="n">keys</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
-        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>  <span class="c1"># Try to convert key to integer</span>
-                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">key</span><span class="p">))</span>
-            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>  <span class="c1"># If not possible construct a hash</span>
-                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">key</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">(),</span> <span class="mi">16</span><span class="p">)</span> <span class="o">%</span> <span class="mi">10</span> <span class="o">**</span> <span class="mi">8</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
-        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-
-            <span class="c1"># e_N = np.sum(r_length)</span>
-            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
-        <span class="n">zero</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.0</span><span class="p">]</span>
-        <span class="n">four</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">4.0</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
-        <span class="n">delta</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">])</span>
-
-        <span class="n">bdio_start_record</span><span class="p">(</span><span class="mh">0x00</span><span class="p">,</span> <span class="mi">8</span><span class="p">,</span> <span class="n">fbdio</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">write_c_double</span><span class="p">(</span><span class="n">double</span><span class="p">):</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span><span class="p">(</span><span class="n">double</span><span class="p">)</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_write_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-
-        <span class="k">def</span> <span class="nf">write_c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">):</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">)</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_write_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-
-        <span class="n">write_c_double</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-        <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">neid</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ndata</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nrep</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">vrep_write</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nt</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">zero</span><span class="p">:</span>
-            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">four</span><span class="p">:</span>
-            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">delta</span><span class="p">:</span>
-            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-    <span class="k">return</span> <span class="mi">0</span>
-
-
-<span class="k">def</span> <span class="nf">_get_kwd</span><span class="p">(</span><span class="n">string</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
-    <span class="k">return</span> <span class="p">(</span><span class="n">string</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-
-
-<span class="k">def</span> <span class="nf">_get_corr_name</span><span class="p">(</span><span class="n">string</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
-    <span class="k">return</span> <span class="p">(</span><span class="n">string</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; NDIM=&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-
-
-<span class="k">def</span> <span class="nf">read_mesons</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Extract mesons data from a bdio file and return it as a dictionary</span>
-
-<span class="sd">    The dictionary can be accessed with a tuple consisting of (type, source_position, kappa1, kappa2)</span>
-
-<span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path : str</span>
-<span class="sd">        path to the bdio file</span>
-<span class="sd">    bdio_path : str</span>
-<span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    start : int</span>
-<span class="sd">        The first configuration to be read (default 1)</span>
-<span class="sd">    stop : int</span>
-<span class="sd">        The last configuration to be read (default None)</span>
-<span class="sd">    step : int</span>
-<span class="sd">        Fixed step size between two measurements (default 1)</span>
-<span class="sd">    alternative_ensemble_name : str</span>
-<span class="sd">        Manually overwrite ensemble name</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
-    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
-    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
-    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
-    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
-    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contanis propagator types (Component of corr_kappa)</span>
-    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
-    <span class="n">d1</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># nnoise</span>
-    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
-    <span class="n">prop_source</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator source positions</span>
-    <span class="c1"># Check noise type for multiple replica?</span>
-    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
-    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
-    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="c1"># EOF reached</span>
-            <span class="k">break</span>
-        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">*</span> <span class="mi">2</span><span class="p">)</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">corr_type</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;complex&#39;</span><span class="p">:</span>
-                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="mi">2</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">-</span> <span class="n">d1</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-
-            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
-            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
-            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
-                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
-            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
-
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
-                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
-                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">),</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP1=&#39;</span><span class="p">)])</span>
-                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">d1</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">d1</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">d1</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">)):</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of random sources&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
-                <span class="n">prop_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;x0=&#39;</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
-                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
-                        <span class="k">break</span>
-                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
-                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
-
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;alternative_ensemble_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;alternative_ensemble_name&#39;</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble name overwritten to&#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of time values: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d1</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span>
-
-    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
-    <span class="n">corr_source</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
-        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]),</span> <span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])])])</span>
-        <span class="k">if</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]</span> <span class="o">!=</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Source position do not match for correlator&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">corr_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]))</span>
-
-    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl_target</span><span class="p">):</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
-        <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">indices</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-        <span class="n">tmp_corr</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">tmp_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">indices</span><span class="p">:</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">][</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">]</span>
-            <span class="n">tmp_corr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">]))</span>
-        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="n">corr_source</span><span class="p">[</span><span class="n">c</span><span class="p">])</span> <span class="o">+</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">])]</span> <span class="o">=</span> <span class="n">tmp_corr</span>
-
-    <span class="c1"># Check that all data entries have the same number of configurations</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-
-
-<span class="k">def</span> <span class="nf">read_dSdm</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Extract dSdm data from a bdio file and return it as a dictionary</span>
-
-<span class="sd">    The dictionary can be accessed with a tuple consisting of (type, kappa)</span>
-
-<span class="sd">    read_dSdm requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path : str</span>
-<span class="sd">        path to the bdio file</span>
-<span class="sd">    bdio_path : str</span>
-<span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    start : int</span>
-<span class="sd">        The first configuration to be read (default 1)</span>
-<span class="sd">    stop : int</span>
-<span class="sd">        The last configuration to be read (default None)</span>
-<span class="sd">    step : int</span>
-<span class="sd">        Fixed step size between two measurements (default 1)</span>
-<span class="sd">    alternative_ensemble_name : str</span>
-<span class="sd">        Manually overwrite ensemble name</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
-    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
-    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
-    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
-    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
-    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator types (Component of corr_kappa)</span>
-    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
-    <span class="c1"># d1 = 0  # nnoise</span>
-    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
-    <span class="c1"># Check noise type for multiple replica?</span>
-    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
-    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
-    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="c1"># EOF reached</span>
-            <span class="k">break</span>
-        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span><span class="p">)</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span><span class="p">:]))</span>
-
-            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
-            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
-            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
-                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
-            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">creator</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CREATOR=&#39;</span><span class="p">)</span>
-                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
-
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
-                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
-                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
-                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
-                        <span class="k">break</span>
-                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
-                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Creator: &#39;</span><span class="p">,</span> <span class="n">creator</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="n">cnfg_no</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-
-    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
-    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
-        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">)]))</span>
-
-    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
-    <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-        <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])[</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
-        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="nb">str</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">]))]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">])</span>
-
-    <span class="c1"># Check that all data entries have the same number of configurations</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">ctypes</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">hashlib</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="k">def</span> <span class="nf">read_ADerrors</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a>    <span class="sd">&quot;&quot;&quot; Extract generic MCMC data from a bdio file</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="sd">    read_ADerrors requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd">    Parameters</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="sd">    ----------</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="sd">    file_path -- path to the bdio file</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a>    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>    <span class="n">bdio_read_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_int32</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>    <span class="n">return_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a>        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">7</span><span class="p">:</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;MD5sum found&#39;</span><span class="p">)</span>  <span class="c1"># For now we just ignore these entries and do not perform any checks on them</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a>            <span class="k">continue</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a>            <span class="c1"># EOF reached</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>            <span class="k">break</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>        <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>        <span class="k">def</span> <span class="nf">read_c_double</span><span class="p">():</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>            <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>        <span class="n">mean</span> <span class="o">=</span> <span class="n">read_c_double</span><span class="p">()</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;mean&#39;</span><span class="p">,</span> <span class="n">mean</span><span class="p">)</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>        <span class="k">def</span> <span class="nf">read_c_size_t</span><span class="p">():</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>            <span class="n">bdio_read_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>        <span class="n">neid</span> <span class="o">=</span> <span class="n">read_c_size_t</span><span class="p">()</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;neid&#39;</span><span class="p">,</span> <span class="n">neid</span><span class="p">)</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>            <span class="n">ndata</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>            <span class="n">nrep</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a>        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>            <span class="n">vrep</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>            <span class="k">for</span> <span class="n">jndex</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrep</span><span class="p">[</span><span class="n">index</span><span class="p">]):</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>                <span class="n">vrep</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>            <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>        <span class="n">zero</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>            <span class="n">zero</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a>        <span class="n">four</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a>            <span class="n">four</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>        <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)</span>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a>        <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a>        <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a>        <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>        <span class="n">delta</span> <span class="o">=</span> <span class="n">pd_buf</span><span class="p">[:]</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a>        <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">delta</span><span class="p">)</span> <span class="o">+</span> <span class="n">mean</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">([</span><span class="n">a</span> <span class="k">for</span> <span class="n">su</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">su</span><span class="p">])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a>        <span class="n">no_reps</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a>        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">no_reps</span><span class="p">)</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a>        <span class="n">tmp_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a>        <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">])</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a>        <span class="k">for</span> <span class="n">loc_id</span><span class="p">,</span> <span class="n">reps</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">ids</span><span class="p">,</span> <span class="n">no_reps</span><span class="p">):</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a>            <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">reps</span><span class="p">):</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a>                <span class="n">missing_chars</span> <span class="o">=</span> <span class="n">ens_length</span> <span class="o">-</span> <span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">))</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a>                <span class="n">tmp_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="n">missing_chars</span> <span class="o">+</span> <span class="s1">&#39;|r&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">{0:03d}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">index</span><span class="p">))</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a>        <span class="n">return_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">tmp_names</span><span class="p">))</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a>    <span class="nb">print</span><span class="p">()</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a>    <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">return_list</span><span class="p">),</span> <span class="s1">&#39;observable(s) extracted.&#39;</span><span class="p">)</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a>    <span class="k">return</span> <span class="n">return_list</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a><span class="k">def</span> <span class="nf">write_ADerrors</span><span class="p">(</span><span class="n">obs_list</span><span class="p">,</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a>    <span class="sd">&quot;&quot;&quot; Write Obs to a bdio file according to ADerrors conventions</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a><span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a><span class="sd">    Parameters</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a><span class="sd">    ----------</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a><span class="sd">    file_path -- path to the bdio file</span>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a><span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a>    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="s1">&#39;e_names&#39;</span><span class="p">):</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first for all obs.&#39;</span><span class="p">)</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a>    <span class="n">bdio_start_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_start_record</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a>    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a>    <span class="n">bdio_flush_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_flush_record</span>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a>    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a>    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">argytpes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a>    <span class="n">bdio_write_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_f64</span>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a>    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a>    <span class="n">bdio_write_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_int32</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a>    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a>    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a>    <span class="n">write</span> <span class="o">=</span> <span class="s1">&#39;w&#39;</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>    <span class="n">b_write</span> <span class="o">=</span> <span class="n">write</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a>    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;pyerrors ADerror export&#39;</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a>    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_write</span><span class="p">),</span> <span class="n">b_form</span><span class="p">)</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a>        <span class="c1"># mean = obs.value</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a>        <span class="n">neid</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a>        <span class="n">vrep_write</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]</span>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a>        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a>        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a>        <span class="n">keys</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a>        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a>        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a>            <span class="k">try</span><span class="p">:</span>  <span class="c1"># Try to convert key to integer</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">key</span><span class="p">))</span>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>  <span class="c1"># If not possible construct a hash</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a>                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">key</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">(),</span> <span class="mi">16</span><span class="p">)</span> <span class="o">%</span> <span class="mi">10</span> <span class="o">**</span> <span class="mi">8</span><span class="p">)</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a>            <span class="c1"># e_N = np.sum(r_length)</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a>            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a>        <span class="n">zero</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.0</span><span class="p">]</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a>        <span class="n">four</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">4.0</span><span class="p">]</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a>        <span class="n">delta</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">])</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a>        <span class="n">bdio_start_record</span><span class="p">(</span><span class="mh">0x00</span><span class="p">,</span> <span class="mi">8</span><span class="p">,</span> <span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a>        <span class="k">def</span> <span class="nf">write_c_double</span><span class="p">(</span><span class="n">double</span><span class="p">):</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span><span class="p">(</span><span class="n">double</span><span class="p">)</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a>            <span class="n">bdio_write_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a>        <span class="k">def</span> <span class="nf">write_c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">):</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">)</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a>            <span class="n">bdio_write_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a>        <span class="n">write_c_double</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a>        <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">neid</span><span class="p">)</span>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ndata</span><span class="p">:</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nrep</span><span class="p">:</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">vrep_write</span><span class="p">:</span>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">:</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nt</span><span class="p">:</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">zero</span><span class="p">:</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a>            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">four</span><span class="p">:</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a>            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">delta</span><span class="p">:</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a>            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a>    <span class="k">return</span> <span class="mi">0</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a>
+</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a><span class="k">def</span> <span class="nf">_get_kwd</span><span class="p">(</span><span class="n">string</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">string</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a>
+</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a>
+</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a><span class="k">def</span> <span class="nf">_get_corr_name</span><span class="p">(</span><span class="n">string</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
+</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">string</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39; NDIM=&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a>
+</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a>
+</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a><span class="k">def</span> <span class="nf">read_mesons</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>    <span class="sd">&quot;&quot;&quot; Extract mesons data from a bdio file and return it as a dictionary</span>
+</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a>
+</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a><span class="sd">    The dictionary can be accessed with a tuple consisting of (type, source_position, kappa1, kappa2)</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a>
+</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a><span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a>
+</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a>
+</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a><span class="sd">    Parameters</span>
+</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a><span class="sd">    ----------</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a><span class="sd">    file_path : str</span>
+</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a><span class="sd">        path to the bdio file</span>
+</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a><span class="sd">    bdio_path : str</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a><span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a><span class="sd">    start : int</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a><span class="sd">        The first configuration to be read (default 1)</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a><span class="sd">    stop : int</span>
+</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a><span class="sd">        The last configuration to be read (default None)</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a><span class="sd">    step : int</span>
+</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a><span class="sd">        Fixed step size between two measurements (default 1)</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a><span class="sd">    alternative_ensemble_name : str</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a><span class="sd">        Manually overwrite ensemble name</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a>
+</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a>    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a>    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a>    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a>
+</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a>
+</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a>
+</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a>
+</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a>    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
+</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a>
+</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a>    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
+</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a>
+</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
+</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a>
+</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a>    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
+</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a>
+</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a>    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
+</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a>
+</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a>    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a>    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a>    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a>
+</span><span id="L-357"><a href="#L-357"><span class="linenos">357</span></a>    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="L-358"><a href="#L-358"><span class="linenos">358</span></a>    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
+</span><span id="L-359"><a href="#L-359"><span class="linenos">359</span></a>    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-360"><a href="#L-360"><span class="linenos">360</span></a>    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
+</span><span id="L-361"><a href="#L-361"><span class="linenos">361</span></a>    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
+</span><span id="L-362"><a href="#L-362"><span class="linenos">362</span></a>    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contanis propagator types (Component of corr_kappa)</span>
+</span><span id="L-363"><a href="#L-363"><span class="linenos">363</span></a>    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
+</span><span id="L-364"><a href="#L-364"><span class="linenos">364</span></a>    <span class="n">d1</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># nnoise</span>
+</span><span id="L-365"><a href="#L-365"><span class="linenos">365</span></a>    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
+</span><span id="L-366"><a href="#L-366"><span class="linenos">366</span></a>    <span class="n">prop_source</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator source positions</span>
+</span><span id="L-367"><a href="#L-367"><span class="linenos">367</span></a>    <span class="c1"># Check noise type for multiple replica?</span>
+</span><span id="L-368"><a href="#L-368"><span class="linenos">368</span></a>    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+</span><span id="L-369"><a href="#L-369"><span class="linenos">369</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-370"><a href="#L-370"><span class="linenos">370</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-371"><a href="#L-371"><span class="linenos">371</span></a>
+</span><span id="L-372"><a href="#L-372"><span class="linenos">372</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
+</span><span id="L-373"><a href="#L-373"><span class="linenos">373</span></a>
+</span><span id="L-374"><a href="#L-374"><span class="linenos">374</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
+</span><span id="L-375"><a href="#L-375"><span class="linenos">375</span></a>    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-376"><a href="#L-376"><span class="linenos">376</span></a>        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-377"><a href="#L-377"><span class="linenos">377</span></a>        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-378"><a href="#L-378"><span class="linenos">378</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-379"><a href="#L-379"><span class="linenos">379</span></a>            <span class="c1"># EOF reached</span>
+</span><span id="L-380"><a href="#L-380"><span class="linenos">380</span></a>            <span class="k">break</span>
+</span><span id="L-381"><a href="#L-381"><span class="linenos">381</span></a>        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-382"><a href="#L-382"><span class="linenos">382</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
+</span><span id="L-383"><a href="#L-383"><span class="linenos">383</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">*</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-384"><a href="#L-384"><span class="linenos">384</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="L-385"><a href="#L-385"><span class="linenos">385</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="L-386"><a href="#L-386"><span class="linenos">386</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-387"><a href="#L-387"><span class="linenos">387</span></a>            <span class="k">if</span> <span class="n">corr_type</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;complex&#39;</span><span class="p">:</span>
+</span><span id="L-388"><a href="#L-388"><span class="linenos">388</span></a>                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="mi">2</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-389"><a href="#L-389"><span class="linenos">389</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-390"><a href="#L-390"><span class="linenos">390</span></a>                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">-</span> <span class="n">d1</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-391"><a href="#L-391"><span class="linenos">391</span></a>
+</span><span id="L-392"><a href="#L-392"><span class="linenos">392</span></a>            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
+</span><span id="L-393"><a href="#L-393"><span class="linenos">393</span></a>            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-394"><a href="#L-394"><span class="linenos">394</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-395"><a href="#L-395"><span class="linenos">395</span></a>            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
+</span><span id="L-396"><a href="#L-396"><span class="linenos">396</span></a>            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
+</span><span id="L-397"><a href="#L-397"><span class="linenos">397</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-398"><a href="#L-398"><span class="linenos">398</span></a>            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
+</span><span id="L-399"><a href="#L-399"><span class="linenos">399</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
+</span><span id="L-400"><a href="#L-400"><span class="linenos">400</span></a>            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
+</span><span id="L-401"><a href="#L-401"><span class="linenos">401</span></a>                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
+</span><span id="L-402"><a href="#L-402"><span class="linenos">402</span></a>                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
+</span><span id="L-403"><a href="#L-403"><span class="linenos">403</span></a>            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
+</span><span id="L-404"><a href="#L-404"><span class="linenos">404</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-405"><a href="#L-405"><span class="linenos">405</span></a>                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
+</span><span id="L-406"><a href="#L-406"><span class="linenos">406</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
+</span><span id="L-407"><a href="#L-407"><span class="linenos">407</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
+</span><span id="L-408"><a href="#L-408"><span class="linenos">408</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
+</span><span id="L-409"><a href="#L-409"><span class="linenos">409</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
+</span><span id="L-410"><a href="#L-410"><span class="linenos">410</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
+</span><span id="L-411"><a href="#L-411"><span class="linenos">411</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
+</span><span id="L-412"><a href="#L-412"><span class="linenos">412</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
+</span><span id="L-413"><a href="#L-413"><span class="linenos">413</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
+</span><span id="L-414"><a href="#L-414"><span class="linenos">414</span></a>
+</span><span id="L-415"><a href="#L-415"><span class="linenos">415</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-416"><a href="#L-416"><span class="linenos">416</span></a>                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
+</span><span id="L-417"><a href="#L-417"><span class="linenos">417</span></a>                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
+</span><span id="L-418"><a href="#L-418"><span class="linenos">418</span></a>                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">),</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP1=&#39;</span><span class="p">)])</span>
+</span><span id="L-419"><a href="#L-419"><span class="linenos">419</span></a>                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-420"><a href="#L-420"><span class="linenos">420</span></a>                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
+</span><span id="L-421"><a href="#L-421"><span class="linenos">421</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-422"><a href="#L-422"><span class="linenos">422</span></a>                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
+</span><span id="L-423"><a href="#L-423"><span class="linenos">423</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
+</span><span id="L-424"><a href="#L-424"><span class="linenos">424</span></a>                <span class="k">if</span> <span class="n">d1</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-425"><a href="#L-425"><span class="linenos">425</span></a>                    <span class="n">d1</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">))</span>
+</span><span id="L-426"><a href="#L-426"><span class="linenos">426</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-427"><a href="#L-427"><span class="linenos">427</span></a>                    <span class="k">if</span> <span class="n">d1</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">)):</span>
+</span><span id="L-428"><a href="#L-428"><span class="linenos">428</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of random sources&#39;</span><span class="p">)</span>
+</span><span id="L-429"><a href="#L-429"><span class="linenos">429</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a>                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
+</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a>                <span class="n">prop_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;x0=&#39;</span><span class="p">))</span>
+</span><span id="L-432"><a href="#L-432"><span class="linenos">432</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="L-433"><a href="#L-433"><span class="linenos">433</span></a>                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
+</span><span id="L-434"><a href="#L-434"><span class="linenos">434</span></a>                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
+</span><span id="L-435"><a href="#L-435"><span class="linenos">435</span></a>                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
+</span><span id="L-436"><a href="#L-436"><span class="linenos">436</span></a>                        <span class="k">break</span>
+</span><span id="L-437"><a href="#L-437"><span class="linenos">437</span></a>                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
+</span><span id="L-438"><a href="#L-438"><span class="linenos">438</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
+</span><span id="L-439"><a href="#L-439"><span class="linenos">439</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-440"><a href="#L-440"><span class="linenos">440</span></a>                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
+</span><span id="L-441"><a href="#L-441"><span class="linenos">441</span></a>                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-442"><a href="#L-442"><span class="linenos">442</span></a>                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="L-443"><a href="#L-443"><span class="linenos">443</span></a>                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-444"><a href="#L-444"><span class="linenos">444</span></a>
+</span><span id="L-445"><a href="#L-445"><span class="linenos">445</span></a>                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-446"><a href="#L-446"><span class="linenos">446</span></a>
+</span><span id="L-447"><a href="#L-447"><span class="linenos">447</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-448"><a href="#L-448"><span class="linenos">448</span></a>
+</span><span id="L-449"><a href="#L-449"><span class="linenos">449</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
+</span><span id="L-450"><a href="#L-450"><span class="linenos">450</span></a>    <span class="k">if</span> <span class="s1">&#39;alternative_ensemble_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-451"><a href="#L-451"><span class="linenos">451</span></a>        <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;alternative_ensemble_name&#39;</span><span class="p">)</span>
+</span><span id="L-452"><a href="#L-452"><span class="linenos">452</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble name overwritten to&#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
+</span><span id="L-453"><a href="#L-453"><span class="linenos">453</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
+</span><span id="L-454"><a href="#L-454"><span class="linenos">454</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
+</span><span id="L-455"><a href="#L-455"><span class="linenos">455</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of time values: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
+</span><span id="L-456"><a href="#L-456"><span class="linenos">456</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d1</span><span class="p">)</span>
+</span><span id="L-457"><a href="#L-457"><span class="linenos">457</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
+</span><span id="L-458"><a href="#L-458"><span class="linenos">458</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span>
+</span><span id="L-459"><a href="#L-459"><span class="linenos">459</span></a>
+</span><span id="L-460"><a href="#L-460"><span class="linenos">460</span></a>    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
+</span><span id="L-461"><a href="#L-461"><span class="linenos">461</span></a>    <span class="n">corr_source</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-462"><a href="#L-462"><span class="linenos">462</span></a>    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
+</span><span id="L-463"><a href="#L-463"><span class="linenos">463</span></a>        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]),</span> <span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])])])</span>
+</span><span id="L-464"><a href="#L-464"><span class="linenos">464</span></a>        <span class="k">if</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]</span> <span class="o">!=</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])]:</span>
+</span><span id="L-465"><a href="#L-465"><span class="linenos">465</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Source position do not match for correlator&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="p">))</span>
+</span><span id="L-466"><a href="#L-466"><span class="linenos">466</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-467"><a href="#L-467"><span class="linenos">467</span></a>            <span class="n">corr_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]))</span>
+</span><span id="L-468"><a href="#L-468"><span class="linenos">468</span></a>
+</span><span id="L-469"><a href="#L-469"><span class="linenos">469</span></a>    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-470"><a href="#L-470"><span class="linenos">470</span></a>        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-471"><a href="#L-471"><span class="linenos">471</span></a>    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
+</span><span id="L-472"><a href="#L-472"><span class="linenos">472</span></a>
+</span><span id="L-473"><a href="#L-473"><span class="linenos">473</span></a>    <span class="k">if</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl_target</span><span class="p">):</span>
+</span><span id="L-474"><a href="#L-474"><span class="linenos">474</span></a>        <span class="k">try</span><span class="p">:</span>
+</span><span id="L-475"><a href="#L-475"><span class="linenos">475</span></a>            <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
+</span><span id="L-476"><a href="#L-476"><span class="linenos">476</span></a>        <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
+</span><span id="L-477"><a href="#L-477"><span class="linenos">477</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
+</span><span id="L-478"><a href="#L-478"><span class="linenos">478</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-479"><a href="#L-479"><span class="linenos">479</span></a>        <span class="n">indices</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-480"><a href="#L-480"><span class="linenos">480</span></a>
+</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a>        <span class="n">tmp_corr</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a>        <span class="n">tmp_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])</span>
+</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a>            <span class="k">if</span> <span class="n">indices</span><span class="p">:</span>
+</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">][</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
+</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">]</span>
+</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a>            <span class="n">tmp_corr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">]))</span>
+</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a>        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="n">corr_source</span><span class="p">[</span><span class="n">c</span><span class="p">])</span> <span class="o">+</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">])]</span> <span class="o">=</span> <span class="n">tmp_corr</span>
+</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a>
+</span><span id="L-493"><a href="#L-493"><span class="linenos">493</span></a>    <span class="c1"># Check that all data entries have the same number of configurations</span>
+</span><span id="L-494"><a href="#L-494"><span class="linenos">494</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-495"><a href="#L-495"><span class="linenos">495</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
+</span><span id="L-496"><a href="#L-496"><span class="linenos">496</span></a>
+</span><span id="L-497"><a href="#L-497"><span class="linenos">497</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span><span id="L-498"><a href="#L-498"><span class="linenos">498</span></a>
+</span><span id="L-499"><a href="#L-499"><span class="linenos">499</span></a>
+</span><span id="L-500"><a href="#L-500"><span class="linenos">500</span></a><span class="k">def</span> <span class="nf">read_dSdm</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-501"><a href="#L-501"><span class="linenos">501</span></a>    <span class="sd">&quot;&quot;&quot; Extract dSdm data from a bdio file and return it as a dictionary</span>
+</span><span id="L-502"><a href="#L-502"><span class="linenos">502</span></a>
+</span><span id="L-503"><a href="#L-503"><span class="linenos">503</span></a><span class="sd">    The dictionary can be accessed with a tuple consisting of (type, kappa)</span>
+</span><span id="L-504"><a href="#L-504"><span class="linenos">504</span></a>
+</span><span id="L-505"><a href="#L-505"><span class="linenos">505</span></a><span class="sd">    read_dSdm requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="L-506"><a href="#L-506"><span class="linenos">506</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="L-507"><a href="#L-507"><span class="linenos">507</span></a>
+</span><span id="L-508"><a href="#L-508"><span class="linenos">508</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="L-509"><a href="#L-509"><span class="linenos">509</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="L-510"><a href="#L-510"><span class="linenos">510</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="L-511"><a href="#L-511"><span class="linenos">511</span></a>
+</span><span id="L-512"><a href="#L-512"><span class="linenos">512</span></a><span class="sd">    Parameters</span>
+</span><span id="L-513"><a href="#L-513"><span class="linenos">513</span></a><span class="sd">    ----------</span>
+</span><span id="L-514"><a href="#L-514"><span class="linenos">514</span></a><span class="sd">    file_path : str</span>
+</span><span id="L-515"><a href="#L-515"><span class="linenos">515</span></a><span class="sd">        path to the bdio file</span>
+</span><span id="L-516"><a href="#L-516"><span class="linenos">516</span></a><span class="sd">    bdio_path : str</span>
+</span><span id="L-517"><a href="#L-517"><span class="linenos">517</span></a><span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="L-518"><a href="#L-518"><span class="linenos">518</span></a><span class="sd">    start : int</span>
+</span><span id="L-519"><a href="#L-519"><span class="linenos">519</span></a><span class="sd">        The first configuration to be read (default 1)</span>
+</span><span id="L-520"><a href="#L-520"><span class="linenos">520</span></a><span class="sd">    stop : int</span>
+</span><span id="L-521"><a href="#L-521"><span class="linenos">521</span></a><span class="sd">        The last configuration to be read (default None)</span>
+</span><span id="L-522"><a href="#L-522"><span class="linenos">522</span></a><span class="sd">    step : int</span>
+</span><span id="L-523"><a href="#L-523"><span class="linenos">523</span></a><span class="sd">        Fixed step size between two measurements (default 1)</span>
+</span><span id="L-524"><a href="#L-524"><span class="linenos">524</span></a><span class="sd">    alternative_ensemble_name : str</span>
+</span><span id="L-525"><a href="#L-525"><span class="linenos">525</span></a><span class="sd">        Manually overwrite ensemble name</span>
+</span><span id="L-526"><a href="#L-526"><span class="linenos">526</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-527"><a href="#L-527"><span class="linenos">527</span></a>
+</span><span id="L-528"><a href="#L-528"><span class="linenos">528</span></a>    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-529"><a href="#L-529"><span class="linenos">529</span></a>    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="L-530"><a href="#L-530"><span class="linenos">530</span></a>    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-531"><a href="#L-531"><span class="linenos">531</span></a>
+</span><span id="L-532"><a href="#L-532"><span class="linenos">532</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="L-533"><a href="#L-533"><span class="linenos">533</span></a>
+</span><span id="L-534"><a href="#L-534"><span class="linenos">534</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="L-535"><a href="#L-535"><span class="linenos">535</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="L-536"><a href="#L-536"><span class="linenos">536</span></a>
+</span><span id="L-537"><a href="#L-537"><span class="linenos">537</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="L-538"><a href="#L-538"><span class="linenos">538</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-539"><a href="#L-539"><span class="linenos">539</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-540"><a href="#L-540"><span class="linenos">540</span></a>
+</span><span id="L-541"><a href="#L-541"><span class="linenos">541</span></a>    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
+</span><span id="L-542"><a href="#L-542"><span class="linenos">542</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-543"><a href="#L-543"><span class="linenos">543</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-544"><a href="#L-544"><span class="linenos">544</span></a>
+</span><span id="L-545"><a href="#L-545"><span class="linenos">545</span></a>    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
+</span><span id="L-546"><a href="#L-546"><span class="linenos">546</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-547"><a href="#L-547"><span class="linenos">547</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-548"><a href="#L-548"><span class="linenos">548</span></a>
+</span><span id="L-549"><a href="#L-549"><span class="linenos">549</span></a>    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
+</span><span id="L-550"><a href="#L-550"><span class="linenos">550</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="L-551"><a href="#L-551"><span class="linenos">551</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-552"><a href="#L-552"><span class="linenos">552</span></a>
+</span><span id="L-553"><a href="#L-553"><span class="linenos">553</span></a>    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
+</span><span id="L-554"><a href="#L-554"><span class="linenos">554</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-555"><a href="#L-555"><span class="linenos">555</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-556"><a href="#L-556"><span class="linenos">556</span></a>
+</span><span id="L-557"><a href="#L-557"><span class="linenos">557</span></a>    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
+</span><span id="L-558"><a href="#L-558"><span class="linenos">558</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="L-559"><a href="#L-559"><span class="linenos">559</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="L-560"><a href="#L-560"><span class="linenos">560</span></a>
+</span><span id="L-561"><a href="#L-561"><span class="linenos">561</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-562"><a href="#L-562"><span class="linenos">562</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
+</span><span id="L-563"><a href="#L-563"><span class="linenos">563</span></a>    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-564"><a href="#L-564"><span class="linenos">564</span></a>    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
+</span><span id="L-565"><a href="#L-565"><span class="linenos">565</span></a>    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-566"><a href="#L-566"><span class="linenos">566</span></a>
+</span><span id="L-567"><a href="#L-567"><span class="linenos">567</span></a>    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="L-568"><a href="#L-568"><span class="linenos">568</span></a>    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
+</span><span id="L-569"><a href="#L-569"><span class="linenos">569</span></a>    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-570"><a href="#L-570"><span class="linenos">570</span></a>    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
+</span><span id="L-571"><a href="#L-571"><span class="linenos">571</span></a>    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
+</span><span id="L-572"><a href="#L-572"><span class="linenos">572</span></a>    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator types (Component of corr_kappa)</span>
+</span><span id="L-573"><a href="#L-573"><span class="linenos">573</span></a>    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
+</span><span id="L-574"><a href="#L-574"><span class="linenos">574</span></a>    <span class="c1"># d1 = 0  # nnoise</span>
+</span><span id="L-575"><a href="#L-575"><span class="linenos">575</span></a>    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
+</span><span id="L-576"><a href="#L-576"><span class="linenos">576</span></a>    <span class="c1"># Check noise type for multiple replica?</span>
+</span><span id="L-577"><a href="#L-577"><span class="linenos">577</span></a>    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+</span><span id="L-578"><a href="#L-578"><span class="linenos">578</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-579"><a href="#L-579"><span class="linenos">579</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-580"><a href="#L-580"><span class="linenos">580</span></a>
+</span><span id="L-581"><a href="#L-581"><span class="linenos">581</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
+</span><span id="L-582"><a href="#L-582"><span class="linenos">582</span></a>
+</span><span id="L-583"><a href="#L-583"><span class="linenos">583</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
+</span><span id="L-584"><a href="#L-584"><span class="linenos">584</span></a>    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-585"><a href="#L-585"><span class="linenos">585</span></a>        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-586"><a href="#L-586"><span class="linenos">586</span></a>        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-587"><a href="#L-587"><span class="linenos">587</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-588"><a href="#L-588"><span class="linenos">588</span></a>            <span class="c1"># EOF reached</span>
+</span><span id="L-589"><a href="#L-589"><span class="linenos">589</span></a>            <span class="k">break</span>
+</span><span id="L-590"><a href="#L-590"><span class="linenos">590</span></a>        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-591"><a href="#L-591"><span class="linenos">591</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
+</span><span id="L-592"><a href="#L-592"><span class="linenos">592</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span><span class="p">)</span>
+</span><span id="L-593"><a href="#L-593"><span class="linenos">593</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="L-594"><a href="#L-594"><span class="linenos">594</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="L-595"><a href="#L-595"><span class="linenos">595</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-596"><a href="#L-596"><span class="linenos">596</span></a>            <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span><span class="p">:]))</span>
+</span><span id="L-597"><a href="#L-597"><span class="linenos">597</span></a>
+</span><span id="L-598"><a href="#L-598"><span class="linenos">598</span></a>            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
+</span><span id="L-599"><a href="#L-599"><span class="linenos">599</span></a>            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-600"><a href="#L-600"><span class="linenos">600</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-601"><a href="#L-601"><span class="linenos">601</span></a>            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
+</span><span id="L-602"><a href="#L-602"><span class="linenos">602</span></a>            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
+</span><span id="L-603"><a href="#L-603"><span class="linenos">603</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="L-604"><a href="#L-604"><span class="linenos">604</span></a>            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
+</span><span id="L-605"><a href="#L-605"><span class="linenos">605</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
+</span><span id="L-606"><a href="#L-606"><span class="linenos">606</span></a>            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
+</span><span id="L-607"><a href="#L-607"><span class="linenos">607</span></a>                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
+</span><span id="L-608"><a href="#L-608"><span class="linenos">608</span></a>                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
+</span><span id="L-609"><a href="#L-609"><span class="linenos">609</span></a>            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
+</span><span id="L-610"><a href="#L-610"><span class="linenos">610</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-611"><a href="#L-611"><span class="linenos">611</span></a>                <span class="n">creator</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CREATOR=&#39;</span><span class="p">)</span>
+</span><span id="L-612"><a href="#L-612"><span class="linenos">612</span></a>                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
+</span><span id="L-613"><a href="#L-613"><span class="linenos">613</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
+</span><span id="L-614"><a href="#L-614"><span class="linenos">614</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
+</span><span id="L-615"><a href="#L-615"><span class="linenos">615</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
+</span><span id="L-616"><a href="#L-616"><span class="linenos">616</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
+</span><span id="L-617"><a href="#L-617"><span class="linenos">617</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
+</span><span id="L-618"><a href="#L-618"><span class="linenos">618</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
+</span><span id="L-619"><a href="#L-619"><span class="linenos">619</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
+</span><span id="L-620"><a href="#L-620"><span class="linenos">620</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
+</span><span id="L-621"><a href="#L-621"><span class="linenos">621</span></a>
+</span><span id="L-622"><a href="#L-622"><span class="linenos">622</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-623"><a href="#L-623"><span class="linenos">623</span></a>                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
+</span><span id="L-624"><a href="#L-624"><span class="linenos">624</span></a>                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
+</span><span id="L-625"><a href="#L-625"><span class="linenos">625</span></a>                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">))</span>
+</span><span id="L-626"><a href="#L-626"><span class="linenos">626</span></a>                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-627"><a href="#L-627"><span class="linenos">627</span></a>                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
+</span><span id="L-628"><a href="#L-628"><span class="linenos">628</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-629"><a href="#L-629"><span class="linenos">629</span></a>                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
+</span><span id="L-630"><a href="#L-630"><span class="linenos">630</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
+</span><span id="L-631"><a href="#L-631"><span class="linenos">631</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-632"><a href="#L-632"><span class="linenos">632</span></a>                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
+</span><span id="L-633"><a href="#L-633"><span class="linenos">633</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="L-634"><a href="#L-634"><span class="linenos">634</span></a>                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
+</span><span id="L-635"><a href="#L-635"><span class="linenos">635</span></a>                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
+</span><span id="L-636"><a href="#L-636"><span class="linenos">636</span></a>                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
+</span><span id="L-637"><a href="#L-637"><span class="linenos">637</span></a>                        <span class="k">break</span>
+</span><span id="L-638"><a href="#L-638"><span class="linenos">638</span></a>                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
+</span><span id="L-639"><a href="#L-639"><span class="linenos">639</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
+</span><span id="L-640"><a href="#L-640"><span class="linenos">640</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-641"><a href="#L-641"><span class="linenos">641</span></a>                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
+</span><span id="L-642"><a href="#L-642"><span class="linenos">642</span></a>                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-643"><a href="#L-643"><span class="linenos">643</span></a>                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="L-644"><a href="#L-644"><span class="linenos">644</span></a>                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-645"><a href="#L-645"><span class="linenos">645</span></a>
+</span><span id="L-646"><a href="#L-646"><span class="linenos">646</span></a>                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-647"><a href="#L-647"><span class="linenos">647</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="L-648"><a href="#L-648"><span class="linenos">648</span></a>
+</span><span id="L-649"><a href="#L-649"><span class="linenos">649</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Creator: &#39;</span><span class="p">,</span> <span class="n">creator</span><span class="p">)</span>
+</span><span id="L-650"><a href="#L-650"><span class="linenos">650</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
+</span><span id="L-651"><a href="#L-651"><span class="linenos">651</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
+</span><span id="L-652"><a href="#L-652"><span class="linenos">652</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
+</span><span id="L-653"><a href="#L-653"><span class="linenos">653</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
+</span><span id="L-654"><a href="#L-654"><span class="linenos">654</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
+</span><span id="L-655"><a href="#L-655"><span class="linenos">655</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="n">cnfg_no</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-656"><a href="#L-656"><span class="linenos">656</span></a>
+</span><span id="L-657"><a href="#L-657"><span class="linenos">657</span></a>    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
+</span><span id="L-658"><a href="#L-658"><span class="linenos">658</span></a>    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
+</span><span id="L-659"><a href="#L-659"><span class="linenos">659</span></a>        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">)]))</span>
+</span><span id="L-660"><a href="#L-660"><span class="linenos">660</span></a>
+</span><span id="L-661"><a href="#L-661"><span class="linenos">661</span></a>    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-662"><a href="#L-662"><span class="linenos">662</span></a>        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-663"><a href="#L-663"><span class="linenos">663</span></a>    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
+</span><span id="L-664"><a href="#L-664"><span class="linenos">664</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="L-665"><a href="#L-665"><span class="linenos">665</span></a>        <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
+</span><span id="L-666"><a href="#L-666"><span class="linenos">666</span></a>    <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
+</span><span id="L-667"><a href="#L-667"><span class="linenos">667</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
+</span><span id="L-668"><a href="#L-668"><span class="linenos">668</span></a>
+</span><span id="L-669"><a href="#L-669"><span class="linenos">669</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-670"><a href="#L-670"><span class="linenos">670</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a>        <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])[</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
+</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a>        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="nb">str</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">]))]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">])</span>
+</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a>
+</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a>    <span class="c1"># Check that all data entries have the same number of configurations</span>
+</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
+</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a>
+</span><span id="L-678"><a href="#L-678"><span class="linenos">678</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -772,156 +772,156 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_ADerrors</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Extract generic MCMC data from a bdio file</span>
-
-<span class="sd">    read_ADerrors requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path -- path to the bdio file</span>
-<span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_int32</span>
-    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
-    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="kc">None</span><span class="p">)</span>
-
-    <span class="n">return_list</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
-    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">7</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;MD5sum found&#39;</span><span class="p">)</span>  <span class="c1"># For now we just ignore these entries and do not perform any checks on them</span>
-            <span class="k">continue</span>
-
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="c1"># EOF reached</span>
-            <span class="k">break</span>
-        <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">read_c_double</span><span class="p">():</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
-
-        <span class="n">mean</span> <span class="o">=</span> <span class="n">read_c_double</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;mean&#39;</span><span class="p">,</span> <span class="n">mean</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">read_c_size_t</span><span class="p">():</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_read_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
-
-        <span class="n">neid</span> <span class="o">=</span> <span class="n">read_c_size_t</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;neid&#39;</span><span class="p">,</span> <span class="n">neid</span><span class="p">)</span>
-
-        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">ndata</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
-
-        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">nrep</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
-
-        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">vrep</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">for</span> <span class="n">jndex</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrep</span><span class="p">[</span><span class="n">index</span><span class="p">]):</span>
-                <span class="n">vrep</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
-
-        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
-
-        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
-
-        <span class="n">zero</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">zero</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
-
-        <span class="n">four</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
-            <span class="n">four</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
-
-        <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)</span>
-        <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-        <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-        <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-        <span class="n">delta</span> <span class="o">=</span> <span class="n">pd_buf</span><span class="p">[:]</span>
-
-        <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">delta</span><span class="p">)</span> <span class="o">+</span> <span class="n">mean</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">([</span><span class="n">a</span> <span class="k">for</span> <span class="n">su</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">su</span><span class="p">])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-        <span class="n">no_reps</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
-        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">no_reps</span><span class="p">)</span>
-        <span class="n">tmp_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">loc_id</span><span class="p">,</span> <span class="n">reps</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">ids</span><span class="p">,</span> <span class="n">no_reps</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">reps</span><span class="p">):</span>
-                <span class="n">missing_chars</span> <span class="o">=</span> <span class="n">ens_length</span> <span class="o">-</span> <span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">))</span>
-                <span class="n">tmp_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="n">missing_chars</span> <span class="o">+</span> <span class="s1">&#39;|r&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">{0:03d}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">index</span><span class="p">))</span>
-
-        <span class="n">return_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">tmp_names</span><span class="p">))</span>
-
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">()</span>
-    <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">return_list</span><span class="p">),</span> <span class="s1">&#39;observable(s) extracted.&#39;</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">return_list</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_ADerrors-7"><a href="#read_ADerrors-7"><span class="linenos">  7</span></a><span class="k">def</span> <span class="nf">read_ADerrors</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_ADerrors-8"><a href="#read_ADerrors-8"><span class="linenos">  8</span></a>    <span class="sd">&quot;&quot;&quot; Extract generic MCMC data from a bdio file</span>
+</span><span id="read_ADerrors-9"><a href="#read_ADerrors-9"><span class="linenos">  9</span></a>
+</span><span id="read_ADerrors-10"><a href="#read_ADerrors-10"><span class="linenos"> 10</span></a><span class="sd">    read_ADerrors requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="read_ADerrors-11"><a href="#read_ADerrors-11"><span class="linenos"> 11</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="read_ADerrors-12"><a href="#read_ADerrors-12"><span class="linenos"> 12</span></a>
+</span><span id="read_ADerrors-13"><a href="#read_ADerrors-13"><span class="linenos"> 13</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="read_ADerrors-14"><a href="#read_ADerrors-14"><span class="linenos"> 14</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="read_ADerrors-15"><a href="#read_ADerrors-15"><span class="linenos"> 15</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="read_ADerrors-16"><a href="#read_ADerrors-16"><span class="linenos"> 16</span></a>
+</span><span id="read_ADerrors-17"><a href="#read_ADerrors-17"><span class="linenos"> 17</span></a><span class="sd">    Parameters</span>
+</span><span id="read_ADerrors-18"><a href="#read_ADerrors-18"><span class="linenos"> 18</span></a><span class="sd">    ----------</span>
+</span><span id="read_ADerrors-19"><a href="#read_ADerrors-19"><span class="linenos"> 19</span></a><span class="sd">    file_path -- path to the bdio file</span>
+</span><span id="read_ADerrors-20"><a href="#read_ADerrors-20"><span class="linenos"> 20</span></a><span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="read_ADerrors-21"><a href="#read_ADerrors-21"><span class="linenos"> 21</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_ADerrors-22"><a href="#read_ADerrors-22"><span class="linenos"> 22</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="read_ADerrors-23"><a href="#read_ADerrors-23"><span class="linenos"> 23</span></a>
+</span><span id="read_ADerrors-24"><a href="#read_ADerrors-24"><span class="linenos"> 24</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="read_ADerrors-25"><a href="#read_ADerrors-25"><span class="linenos"> 25</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="read_ADerrors-26"><a href="#read_ADerrors-26"><span class="linenos"> 26</span></a>
+</span><span id="read_ADerrors-27"><a href="#read_ADerrors-27"><span class="linenos"> 27</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="read_ADerrors-28"><a href="#read_ADerrors-28"><span class="linenos"> 28</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_ADerrors-29"><a href="#read_ADerrors-29"><span class="linenos"> 29</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_ADerrors-30"><a href="#read_ADerrors-30"><span class="linenos"> 30</span></a>
+</span><span id="read_ADerrors-31"><a href="#read_ADerrors-31"><span class="linenos"> 31</span></a>    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
+</span><span id="read_ADerrors-32"><a href="#read_ADerrors-32"><span class="linenos"> 32</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_ADerrors-33"><a href="#read_ADerrors-33"><span class="linenos"> 33</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_ADerrors-34"><a href="#read_ADerrors-34"><span class="linenos"> 34</span></a>
+</span><span id="read_ADerrors-35"><a href="#read_ADerrors-35"><span class="linenos"> 35</span></a>    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
+</span><span id="read_ADerrors-36"><a href="#read_ADerrors-36"><span class="linenos"> 36</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_ADerrors-37"><a href="#read_ADerrors-37"><span class="linenos"> 37</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_ADerrors-38"><a href="#read_ADerrors-38"><span class="linenos"> 38</span></a>
+</span><span id="read_ADerrors-39"><a href="#read_ADerrors-39"><span class="linenos"> 39</span></a>    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
+</span><span id="read_ADerrors-40"><a href="#read_ADerrors-40"><span class="linenos"> 40</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_ADerrors-41"><a href="#read_ADerrors-41"><span class="linenos"> 41</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_ADerrors-42"><a href="#read_ADerrors-42"><span class="linenos"> 42</span></a>
+</span><span id="read_ADerrors-43"><a href="#read_ADerrors-43"><span class="linenos"> 43</span></a>    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
+</span><span id="read_ADerrors-44"><a href="#read_ADerrors-44"><span class="linenos"> 44</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_ADerrors-45"><a href="#read_ADerrors-45"><span class="linenos"> 45</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_ADerrors-46"><a href="#read_ADerrors-46"><span class="linenos"> 46</span></a>
+</span><span id="read_ADerrors-47"><a href="#read_ADerrors-47"><span class="linenos"> 47</span></a>    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
+</span><span id="read_ADerrors-48"><a href="#read_ADerrors-48"><span class="linenos"> 48</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_ADerrors-49"><a href="#read_ADerrors-49"><span class="linenos"> 49</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_ADerrors-50"><a href="#read_ADerrors-50"><span class="linenos"> 50</span></a>
+</span><span id="read_ADerrors-51"><a href="#read_ADerrors-51"><span class="linenos"> 51</span></a>    <span class="n">bdio_read_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_int32</span>
+</span><span id="read_ADerrors-52"><a href="#read_ADerrors-52"><span class="linenos"> 52</span></a>    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_ADerrors-53"><a href="#read_ADerrors-53"><span class="linenos"> 53</span></a>    <span class="n">bdio_read_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_ADerrors-54"><a href="#read_ADerrors-54"><span class="linenos"> 54</span></a>
+</span><span id="read_ADerrors-55"><a href="#read_ADerrors-55"><span class="linenos"> 55</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_ADerrors-56"><a href="#read_ADerrors-56"><span class="linenos"> 56</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
+</span><span id="read_ADerrors-57"><a href="#read_ADerrors-57"><span class="linenos"> 57</span></a>    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_ADerrors-58"><a href="#read_ADerrors-58"><span class="linenos"> 58</span></a>
+</span><span id="read_ADerrors-59"><a href="#read_ADerrors-59"><span class="linenos"> 59</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="read_ADerrors-60"><a href="#read_ADerrors-60"><span class="linenos"> 60</span></a>
+</span><span id="read_ADerrors-61"><a href="#read_ADerrors-61"><span class="linenos"> 61</span></a>    <span class="n">return_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-62"><a href="#read_ADerrors-62"><span class="linenos"> 62</span></a>
+</span><span id="read_ADerrors-63"><a href="#read_ADerrors-63"><span class="linenos"> 63</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
+</span><span id="read_ADerrors-64"><a href="#read_ADerrors-64"><span class="linenos"> 64</span></a>    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_ADerrors-65"><a href="#read_ADerrors-65"><span class="linenos"> 65</span></a>        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_ADerrors-66"><a href="#read_ADerrors-66"><span class="linenos"> 66</span></a>        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_ADerrors-67"><a href="#read_ADerrors-67"><span class="linenos"> 67</span></a>
+</span><span id="read_ADerrors-68"><a href="#read_ADerrors-68"><span class="linenos"> 68</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">7</span><span class="p">:</span>
+</span><span id="read_ADerrors-69"><a href="#read_ADerrors-69"><span class="linenos"> 69</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;MD5sum found&#39;</span><span class="p">)</span>  <span class="c1"># For now we just ignore these entries and do not perform any checks on them</span>
+</span><span id="read_ADerrors-70"><a href="#read_ADerrors-70"><span class="linenos"> 70</span></a>            <span class="k">continue</span>
+</span><span id="read_ADerrors-71"><a href="#read_ADerrors-71"><span class="linenos"> 71</span></a>
+</span><span id="read_ADerrors-72"><a href="#read_ADerrors-72"><span class="linenos"> 72</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_ADerrors-73"><a href="#read_ADerrors-73"><span class="linenos"> 73</span></a>            <span class="c1"># EOF reached</span>
+</span><span id="read_ADerrors-74"><a href="#read_ADerrors-74"><span class="linenos"> 74</span></a>            <span class="k">break</span>
+</span><span id="read_ADerrors-75"><a href="#read_ADerrors-75"><span class="linenos"> 75</span></a>        <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_ADerrors-76"><a href="#read_ADerrors-76"><span class="linenos"> 76</span></a>
+</span><span id="read_ADerrors-77"><a href="#read_ADerrors-77"><span class="linenos"> 77</span></a>        <span class="k">def</span> <span class="nf">read_c_double</span><span class="p">():</span>
+</span><span id="read_ADerrors-78"><a href="#read_ADerrors-78"><span class="linenos"> 78</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span>
+</span><span id="read_ADerrors-79"><a href="#read_ADerrors-79"><span class="linenos"> 79</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="read_ADerrors-80"><a href="#read_ADerrors-80"><span class="linenos"> 80</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="read_ADerrors-81"><a href="#read_ADerrors-81"><span class="linenos"> 81</span></a>            <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="read_ADerrors-82"><a href="#read_ADerrors-82"><span class="linenos"> 82</span></a>            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
+</span><span id="read_ADerrors-83"><a href="#read_ADerrors-83"><span class="linenos"> 83</span></a>
+</span><span id="read_ADerrors-84"><a href="#read_ADerrors-84"><span class="linenos"> 84</span></a>        <span class="n">mean</span> <span class="o">=</span> <span class="n">read_c_double</span><span class="p">()</span>
+</span><span id="read_ADerrors-85"><a href="#read_ADerrors-85"><span class="linenos"> 85</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;mean&#39;</span><span class="p">,</span> <span class="n">mean</span><span class="p">)</span>
+</span><span id="read_ADerrors-86"><a href="#read_ADerrors-86"><span class="linenos"> 86</span></a>
+</span><span id="read_ADerrors-87"><a href="#read_ADerrors-87"><span class="linenos"> 87</span></a>        <span class="k">def</span> <span class="nf">read_c_size_t</span><span class="p">():</span>
+</span><span id="read_ADerrors-88"><a href="#read_ADerrors-88"><span class="linenos"> 88</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_ADerrors-89"><a href="#read_ADerrors-89"><span class="linenos"> 89</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="read_ADerrors-90"><a href="#read_ADerrors-90"><span class="linenos"> 90</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="read_ADerrors-91"><a href="#read_ADerrors-91"><span class="linenos"> 91</span></a>            <span class="n">bdio_read_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="read_ADerrors-92"><a href="#read_ADerrors-92"><span class="linenos"> 92</span></a>            <span class="k">return</span> <span class="n">pd_buf</span><span class="o">.</span><span class="n">value</span>
+</span><span id="read_ADerrors-93"><a href="#read_ADerrors-93"><span class="linenos"> 93</span></a>
+</span><span id="read_ADerrors-94"><a href="#read_ADerrors-94"><span class="linenos"> 94</span></a>        <span class="n">neid</span> <span class="o">=</span> <span class="n">read_c_size_t</span><span class="p">()</span>
+</span><span id="read_ADerrors-95"><a href="#read_ADerrors-95"><span class="linenos"> 95</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;neid&#39;</span><span class="p">,</span> <span class="n">neid</span><span class="p">)</span>
+</span><span id="read_ADerrors-96"><a href="#read_ADerrors-96"><span class="linenos"> 96</span></a>
+</span><span id="read_ADerrors-97"><a href="#read_ADerrors-97"><span class="linenos"> 97</span></a>        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-98"><a href="#read_ADerrors-98"><span class="linenos"> 98</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="read_ADerrors-99"><a href="#read_ADerrors-99"><span class="linenos"> 99</span></a>            <span class="n">ndata</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="read_ADerrors-100"><a href="#read_ADerrors-100"><span class="linenos">100</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
+</span><span id="read_ADerrors-101"><a href="#read_ADerrors-101"><span class="linenos">101</span></a>
+</span><span id="read_ADerrors-102"><a href="#read_ADerrors-102"><span class="linenos">102</span></a>        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-103"><a href="#read_ADerrors-103"><span class="linenos">103</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="read_ADerrors-104"><a href="#read_ADerrors-104"><span class="linenos">104</span></a>            <span class="n">nrep</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="read_ADerrors-105"><a href="#read_ADerrors-105"><span class="linenos">105</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
+</span><span id="read_ADerrors-106"><a href="#read_ADerrors-106"><span class="linenos">106</span></a>
+</span><span id="read_ADerrors-107"><a href="#read_ADerrors-107"><span class="linenos">107</span></a>        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-108"><a href="#read_ADerrors-108"><span class="linenos">108</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="read_ADerrors-109"><a href="#read_ADerrors-109"><span class="linenos">109</span></a>            <span class="n">vrep</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_ADerrors-110"><a href="#read_ADerrors-110"><span class="linenos">110</span></a>            <span class="k">for</span> <span class="n">jndex</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrep</span><span class="p">[</span><span class="n">index</span><span class="p">]):</span>
+</span><span id="read_ADerrors-111"><a href="#read_ADerrors-111"><span class="linenos">111</span></a>                <span class="n">vrep</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="read_ADerrors-112"><a href="#read_ADerrors-112"><span class="linenos">112</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
+</span><span id="read_ADerrors-113"><a href="#read_ADerrors-113"><span class="linenos">113</span></a>
+</span><span id="read_ADerrors-114"><a href="#read_ADerrors-114"><span class="linenos">114</span></a>        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-115"><a href="#read_ADerrors-115"><span class="linenos">115</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="read_ADerrors-116"><a href="#read_ADerrors-116"><span class="linenos">116</span></a>            <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="read_ADerrors-117"><a href="#read_ADerrors-117"><span class="linenos">117</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
+</span><span id="read_ADerrors-118"><a href="#read_ADerrors-118"><span class="linenos">118</span></a>
+</span><span id="read_ADerrors-119"><a href="#read_ADerrors-119"><span class="linenos">119</span></a>        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-120"><a href="#read_ADerrors-120"><span class="linenos">120</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="read_ADerrors-121"><a href="#read_ADerrors-121"><span class="linenos">121</span></a>            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_size_t</span><span class="p">())</span>
+</span><span id="read_ADerrors-122"><a href="#read_ADerrors-122"><span class="linenos">122</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
+</span><span id="read_ADerrors-123"><a href="#read_ADerrors-123"><span class="linenos">123</span></a>
+</span><span id="read_ADerrors-124"><a href="#read_ADerrors-124"><span class="linenos">124</span></a>        <span class="n">zero</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-125"><a href="#read_ADerrors-125"><span class="linenos">125</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="read_ADerrors-126"><a href="#read_ADerrors-126"><span class="linenos">126</span></a>            <span class="n">zero</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
+</span><span id="read_ADerrors-127"><a href="#read_ADerrors-127"><span class="linenos">127</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
+</span><span id="read_ADerrors-128"><a href="#read_ADerrors-128"><span class="linenos">128</span></a>
+</span><span id="read_ADerrors-129"><a href="#read_ADerrors-129"><span class="linenos">129</span></a>        <span class="n">four</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-130"><a href="#read_ADerrors-130"><span class="linenos">130</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">neid</span><span class="p">):</span>
+</span><span id="read_ADerrors-131"><a href="#read_ADerrors-131"><span class="linenos">131</span></a>            <span class="n">four</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">read_c_double</span><span class="p">())</span>
+</span><span id="read_ADerrors-132"><a href="#read_ADerrors-132"><span class="linenos">132</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
+</span><span id="read_ADerrors-133"><a href="#read_ADerrors-133"><span class="linenos">133</span></a>
+</span><span id="read_ADerrors-134"><a href="#read_ADerrors-134"><span class="linenos">134</span></a>        <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)</span>
+</span><span id="read_ADerrors-135"><a href="#read_ADerrors-135"><span class="linenos">135</span></a>        <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="read_ADerrors-136"><a href="#read_ADerrors-136"><span class="linenos">136</span></a>        <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="read_ADerrors-137"><a href="#read_ADerrors-137"><span class="linenos">137</span></a>        <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">ndata</span><span class="p">)),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="read_ADerrors-138"><a href="#read_ADerrors-138"><span class="linenos">138</span></a>        <span class="n">delta</span> <span class="o">=</span> <span class="n">pd_buf</span><span class="p">[:]</span>
+</span><span id="read_ADerrors-139"><a href="#read_ADerrors-139"><span class="linenos">139</span></a>
+</span><span id="read_ADerrors-140"><a href="#read_ADerrors-140"><span class="linenos">140</span></a>        <span class="n">samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">delta</span><span class="p">)</span> <span class="o">+</span> <span class="n">mean</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">([</span><span class="n">a</span> <span class="k">for</span> <span class="n">su</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">a</span> <span class="ow">in</span> <span class="n">su</span><span class="p">])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="read_ADerrors-141"><a href="#read_ADerrors-141"><span class="linenos">141</span></a>        <span class="n">no_reps</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
+</span><span id="read_ADerrors-142"><a href="#read_ADerrors-142"><span class="linenos">142</span></a>        <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">no_reps</span><span class="p">)</span>
+</span><span id="read_ADerrors-143"><a href="#read_ADerrors-143"><span class="linenos">143</span></a>        <span class="n">tmp_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ADerrors-144"><a href="#read_ADerrors-144"><span class="linenos">144</span></a>        <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">o</span><span class="p">))</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">])</span>
+</span><span id="read_ADerrors-145"><a href="#read_ADerrors-145"><span class="linenos">145</span></a>        <span class="k">for</span> <span class="n">loc_id</span><span class="p">,</span> <span class="n">reps</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">ids</span><span class="p">,</span> <span class="n">no_reps</span><span class="p">):</span>
+</span><span id="read_ADerrors-146"><a href="#read_ADerrors-146"><span class="linenos">146</span></a>            <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">reps</span><span class="p">):</span>
+</span><span id="read_ADerrors-147"><a href="#read_ADerrors-147"><span class="linenos">147</span></a>                <span class="n">missing_chars</span> <span class="o">=</span> <span class="n">ens_length</span> <span class="o">-</span> <span class="nb">len</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">))</span>
+</span><span id="read_ADerrors-148"><a href="#read_ADerrors-148"><span class="linenos">148</span></a>                <span class="n">tmp_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">loc_id</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39; &#39;</span> <span class="o">*</span> <span class="n">missing_chars</span> <span class="o">+</span> <span class="s1">&#39;|r&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">{0:03d}</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">index</span><span class="p">))</span>
+</span><span id="read_ADerrors-149"><a href="#read_ADerrors-149"><span class="linenos">149</span></a>
+</span><span id="read_ADerrors-150"><a href="#read_ADerrors-150"><span class="linenos">150</span></a>        <span class="n">return_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">tmp_names</span><span class="p">))</span>
+</span><span id="read_ADerrors-151"><a href="#read_ADerrors-151"><span class="linenos">151</span></a>
+</span><span id="read_ADerrors-152"><a href="#read_ADerrors-152"><span class="linenos">152</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_ADerrors-153"><a href="#read_ADerrors-153"><span class="linenos">153</span></a>    <span class="nb">print</span><span class="p">()</span>
+</span><span id="read_ADerrors-154"><a href="#read_ADerrors-154"><span class="linenos">154</span></a>    <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">return_list</span><span class="p">),</span> <span class="s1">&#39;observable(s) extracted.&#39;</span><span class="p">)</span>
+</span><span id="read_ADerrors-155"><a href="#read_ADerrors-155"><span class="linenos">155</span></a>    <span class="k">return</span> <span class="n">return_list</span>
+</span></pre></div>
 
         </details>
 
@@ -954,130 +954,130 @@ adding the flag -fPIC to CC and changing the all target to</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">write_ADerrors</span><span class="p">(</span><span class="n">obs_list</span><span class="p">,</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Write Obs to a bdio file according to ADerrors conventions</span>
-
-<span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path -- path to the bdio file</span>
-<span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="s1">&#39;e_names&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first for all obs.&#39;</span><span class="p">)</span>
-
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_start_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_start_record</span>
-    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_flush_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_flush_record</span>
-    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">argytpes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_write_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_f64</span>
-    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_write_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_int32</span>
-    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">write</span> <span class="o">=</span> <span class="s1">&#39;w&#39;</span>
-    <span class="n">b_write</span> <span class="o">=</span> <span class="n">write</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;pyerrors ADerror export&#39;</span>
-    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_write</span><span class="p">),</span> <span class="n">b_form</span><span class="p">)</span>
-
-    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
-        <span class="c1"># mean = obs.value</span>
-        <span class="n">neid</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span>
-        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span>
-        <span class="n">vrep_write</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]</span>
-        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
-        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
-        <span class="n">keys</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
-        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>  <span class="c1"># Try to convert key to integer</span>
-                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">key</span><span class="p">))</span>
-            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>  <span class="c1"># If not possible construct a hash</span>
-                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">key</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">(),</span> <span class="mi">16</span><span class="p">)</span> <span class="o">%</span> <span class="mi">10</span> <span class="o">**</span> <span class="mi">8</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
-        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-
-            <span class="c1"># e_N = np.sum(r_length)</span>
-            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
-        <span class="n">zero</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.0</span><span class="p">]</span>
-        <span class="n">four</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">4.0</span><span class="p">]</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
-        <span class="n">delta</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">])</span>
-
-        <span class="n">bdio_start_record</span><span class="p">(</span><span class="mh">0x00</span><span class="p">,</span> <span class="mi">8</span><span class="p">,</span> <span class="n">fbdio</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">write_c_double</span><span class="p">(</span><span class="n">double</span><span class="p">):</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span><span class="p">(</span><span class="n">double</span><span class="p">)</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_write_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-
-        <span class="k">def</span> <span class="nf">write_c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">):</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">)</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">bdio_write_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-
-        <span class="n">write_c_double</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-        <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">neid</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ndata</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nrep</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">vrep_write</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nt</span><span class="p">:</span>
-            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">zero</span><span class="p">:</span>
-            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">four</span><span class="p">:</span>
-            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">delta</span><span class="p">:</span>
-            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
-
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-    <span class="k">return</span> <span class="mi">0</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="write_ADerrors-158"><a href="#write_ADerrors-158"><span class="linenos">158</span></a><span class="k">def</span> <span class="nf">write_ADerrors</span><span class="p">(</span><span class="n">obs_list</span><span class="p">,</span> <span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="write_ADerrors-159"><a href="#write_ADerrors-159"><span class="linenos">159</span></a>    <span class="sd">&quot;&quot;&quot; Write Obs to a bdio file according to ADerrors conventions</span>
+</span><span id="write_ADerrors-160"><a href="#write_ADerrors-160"><span class="linenos">160</span></a>
+</span><span id="write_ADerrors-161"><a href="#write_ADerrors-161"><span class="linenos">161</span></a><span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="write_ADerrors-162"><a href="#write_ADerrors-162"><span class="linenos">162</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="write_ADerrors-163"><a href="#write_ADerrors-163"><span class="linenos">163</span></a>
+</span><span id="write_ADerrors-164"><a href="#write_ADerrors-164"><span class="linenos">164</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="write_ADerrors-165"><a href="#write_ADerrors-165"><span class="linenos">165</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="write_ADerrors-166"><a href="#write_ADerrors-166"><span class="linenos">166</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="write_ADerrors-167"><a href="#write_ADerrors-167"><span class="linenos">167</span></a>
+</span><span id="write_ADerrors-168"><a href="#write_ADerrors-168"><span class="linenos">168</span></a><span class="sd">    Parameters</span>
+</span><span id="write_ADerrors-169"><a href="#write_ADerrors-169"><span class="linenos">169</span></a><span class="sd">    ----------</span>
+</span><span id="write_ADerrors-170"><a href="#write_ADerrors-170"><span class="linenos">170</span></a><span class="sd">    file_path -- path to the bdio file</span>
+</span><span id="write_ADerrors-171"><a href="#write_ADerrors-171"><span class="linenos">171</span></a><span class="sd">    bdio_path -- path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="write_ADerrors-172"><a href="#write_ADerrors-172"><span class="linenos">172</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="write_ADerrors-173"><a href="#write_ADerrors-173"><span class="linenos">173</span></a>
+</span><span id="write_ADerrors-174"><a href="#write_ADerrors-174"><span class="linenos">174</span></a>    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
+</span><span id="write_ADerrors-175"><a href="#write_ADerrors-175"><span class="linenos">175</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="s1">&#39;e_names&#39;</span><span class="p">):</span>
+</span><span id="write_ADerrors-176"><a href="#write_ADerrors-176"><span class="linenos">176</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first for all obs.&#39;</span><span class="p">)</span>
+</span><span id="write_ADerrors-177"><a href="#write_ADerrors-177"><span class="linenos">177</span></a>
+</span><span id="write_ADerrors-178"><a href="#write_ADerrors-178"><span class="linenos">178</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="write_ADerrors-179"><a href="#write_ADerrors-179"><span class="linenos">179</span></a>
+</span><span id="write_ADerrors-180"><a href="#write_ADerrors-180"><span class="linenos">180</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="write_ADerrors-181"><a href="#write_ADerrors-181"><span class="linenos">181</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="write_ADerrors-182"><a href="#write_ADerrors-182"><span class="linenos">182</span></a>
+</span><span id="write_ADerrors-183"><a href="#write_ADerrors-183"><span class="linenos">183</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="write_ADerrors-184"><a href="#write_ADerrors-184"><span class="linenos">184</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="write_ADerrors-185"><a href="#write_ADerrors-185"><span class="linenos">185</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="write_ADerrors-186"><a href="#write_ADerrors-186"><span class="linenos">186</span></a>
+</span><span id="write_ADerrors-187"><a href="#write_ADerrors-187"><span class="linenos">187</span></a>    <span class="n">bdio_start_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_start_record</span>
+</span><span id="write_ADerrors-188"><a href="#write_ADerrors-188"><span class="linenos">188</span></a>    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="write_ADerrors-189"><a href="#write_ADerrors-189"><span class="linenos">189</span></a>    <span class="n">bdio_start_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="write_ADerrors-190"><a href="#write_ADerrors-190"><span class="linenos">190</span></a>
+</span><span id="write_ADerrors-191"><a href="#write_ADerrors-191"><span class="linenos">191</span></a>    <span class="n">bdio_flush_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_flush_record</span>
+</span><span id="write_ADerrors-192"><a href="#write_ADerrors-192"><span class="linenos">192</span></a>    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="write_ADerrors-193"><a href="#write_ADerrors-193"><span class="linenos">193</span></a>    <span class="n">bdio_flush_record</span><span class="o">.</span><span class="n">argytpes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="write_ADerrors-194"><a href="#write_ADerrors-194"><span class="linenos">194</span></a>
+</span><span id="write_ADerrors-195"><a href="#write_ADerrors-195"><span class="linenos">195</span></a>    <span class="n">bdio_write_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_f64</span>
+</span><span id="write_ADerrors-196"><a href="#write_ADerrors-196"><span class="linenos">196</span></a>    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="write_ADerrors-197"><a href="#write_ADerrors-197"><span class="linenos">197</span></a>    <span class="n">bdio_write_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="write_ADerrors-198"><a href="#write_ADerrors-198"><span class="linenos">198</span></a>
+</span><span id="write_ADerrors-199"><a href="#write_ADerrors-199"><span class="linenos">199</span></a>    <span class="n">bdio_write_int32</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_write_int32</span>
+</span><span id="write_ADerrors-200"><a href="#write_ADerrors-200"><span class="linenos">200</span></a>    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="write_ADerrors-201"><a href="#write_ADerrors-201"><span class="linenos">201</span></a>    <span class="n">bdio_write_int32</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="write_ADerrors-202"><a href="#write_ADerrors-202"><span class="linenos">202</span></a>
+</span><span id="write_ADerrors-203"><a href="#write_ADerrors-203"><span class="linenos">203</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="write_ADerrors-204"><a href="#write_ADerrors-204"><span class="linenos">204</span></a>    <span class="n">write</span> <span class="o">=</span> <span class="s1">&#39;w&#39;</span>
+</span><span id="write_ADerrors-205"><a href="#write_ADerrors-205"><span class="linenos">205</span></a>    <span class="n">b_write</span> <span class="o">=</span> <span class="n">write</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="write_ADerrors-206"><a href="#write_ADerrors-206"><span class="linenos">206</span></a>    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;pyerrors ADerror export&#39;</span>
+</span><span id="write_ADerrors-207"><a href="#write_ADerrors-207"><span class="linenos">207</span></a>    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="write_ADerrors-208"><a href="#write_ADerrors-208"><span class="linenos">208</span></a>
+</span><span id="write_ADerrors-209"><a href="#write_ADerrors-209"><span class="linenos">209</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_write</span><span class="p">),</span> <span class="n">b_form</span><span class="p">)</span>
+</span><span id="write_ADerrors-210"><a href="#write_ADerrors-210"><span class="linenos">210</span></a>
+</span><span id="write_ADerrors-211"><a href="#write_ADerrors-211"><span class="linenos">211</span></a>    <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">obs_list</span><span class="p">:</span>
+</span><span id="write_ADerrors-212"><a href="#write_ADerrors-212"><span class="linenos">212</span></a>        <span class="c1"># mean = obs.value</span>
+</span><span id="write_ADerrors-213"><a href="#write_ADerrors-213"><span class="linenos">213</span></a>        <span class="n">neid</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span>
+</span><span id="write_ADerrors-214"><a href="#write_ADerrors-214"><span class="linenos">214</span></a>        <span class="n">vrep</span> <span class="o">=</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span>
+</span><span id="write_ADerrors-215"><a href="#write_ADerrors-215"><span class="linenos">215</span></a>        <span class="n">vrep_write</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="n">vrep</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]</span>
+</span><span id="write_ADerrors-216"><a href="#write_ADerrors-216"><span class="linenos">216</span></a>        <span class="n">ndata</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
+</span><span id="write_ADerrors-217"><a href="#write_ADerrors-217"><span class="linenos">217</span></a>        <span class="n">nrep</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">vrep</span><span class="p">]</span>
+</span><span id="write_ADerrors-218"><a href="#write_ADerrors-218"><span class="linenos">218</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ndata&#39;</span><span class="p">,</span> <span class="n">ndata</span><span class="p">)</span>
+</span><span id="write_ADerrors-219"><a href="#write_ADerrors-219"><span class="linenos">219</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nrep&#39;</span><span class="p">,</span> <span class="n">nrep</span><span class="p">)</span>
+</span><span id="write_ADerrors-220"><a href="#write_ADerrors-220"><span class="linenos">220</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;vrep&#39;</span><span class="p">,</span> <span class="n">vrep</span><span class="p">)</span>
+</span><span id="write_ADerrors-221"><a href="#write_ADerrors-221"><span class="linenos">221</span></a>        <span class="n">keys</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+</span><span id="write_ADerrors-222"><a href="#write_ADerrors-222"><span class="linenos">222</span></a>        <span class="n">ids</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="write_ADerrors-223"><a href="#write_ADerrors-223"><span class="linenos">223</span></a>        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
+</span><span id="write_ADerrors-224"><a href="#write_ADerrors-224"><span class="linenos">224</span></a>            <span class="k">try</span><span class="p">:</span>  <span class="c1"># Try to convert key to integer</span>
+</span><span id="write_ADerrors-225"><a href="#write_ADerrors-225"><span class="linenos">225</span></a>                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">key</span><span class="p">))</span>
+</span><span id="write_ADerrors-226"><a href="#write_ADerrors-226"><span class="linenos">226</span></a>            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>  <span class="c1"># If not possible construct a hash</span>
+</span><span id="write_ADerrors-227"><a href="#write_ADerrors-227"><span class="linenos">227</span></a>                <span class="n">ids</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">hashlib</span><span class="o">.</span><span class="n">sha256</span><span class="p">(</span><span class="n">key</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span><span class="o">.</span><span class="n">hexdigest</span><span class="p">(),</span> <span class="mi">16</span><span class="p">)</span> <span class="o">%</span> <span class="mi">10</span> <span class="o">**</span> <span class="mi">8</span><span class="p">)</span>
+</span><span id="write_ADerrors-228"><a href="#write_ADerrors-228"><span class="linenos">228</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;ids&#39;</span><span class="p">,</span> <span class="n">ids</span><span class="p">)</span>
+</span><span id="write_ADerrors-229"><a href="#write_ADerrors-229"><span class="linenos">229</span></a>        <span class="n">nt</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="write_ADerrors-230"><a href="#write_ADerrors-230"><span class="linenos">230</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="write_ADerrors-231"><a href="#write_ADerrors-231"><span class="linenos">231</span></a>
+</span><span id="write_ADerrors-232"><a href="#write_ADerrors-232"><span class="linenos">232</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="write_ADerrors-233"><a href="#write_ADerrors-233"><span class="linenos">233</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="write_ADerrors-234"><a href="#write_ADerrors-234"><span class="linenos">234</span></a>                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="write_ADerrors-235"><a href="#write_ADerrors-235"><span class="linenos">235</span></a>
+</span><span id="write_ADerrors-236"><a href="#write_ADerrors-236"><span class="linenos">236</span></a>            <span class="c1"># e_N = np.sum(r_length)</span>
+</span><span id="write_ADerrors-237"><a href="#write_ADerrors-237"><span class="linenos">237</span></a>            <span class="n">nt</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="write_ADerrors-238"><a href="#write_ADerrors-238"><span class="linenos">238</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nt&#39;</span><span class="p">,</span> <span class="n">nt</span><span class="p">)</span>
+</span><span id="write_ADerrors-239"><a href="#write_ADerrors-239"><span class="linenos">239</span></a>        <span class="n">zero</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">0.0</span><span class="p">]</span>
+</span><span id="write_ADerrors-240"><a href="#write_ADerrors-240"><span class="linenos">240</span></a>        <span class="n">four</span> <span class="o">=</span> <span class="n">neid</span> <span class="o">*</span> <span class="p">[</span><span class="mf">4.0</span><span class="p">]</span>
+</span><span id="write_ADerrors-241"><a href="#write_ADerrors-241"><span class="linenos">241</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;zero&#39;</span><span class="p">,</span> <span class="n">zero</span><span class="p">)</span>
+</span><span id="write_ADerrors-242"><a href="#write_ADerrors-242"><span class="linenos">242</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;four&#39;</span><span class="p">,</span> <span class="n">four</span><span class="p">)</span>
+</span><span id="write_ADerrors-243"><a href="#write_ADerrors-243"><span class="linenos">243</span></a>        <span class="n">delta</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[[</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">o</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">sl</span><span class="p">]</span> <span class="k">for</span> <span class="n">sl</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">values</span><span class="p">())]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">])</span>
+</span><span id="write_ADerrors-244"><a href="#write_ADerrors-244"><span class="linenos">244</span></a>
+</span><span id="write_ADerrors-245"><a href="#write_ADerrors-245"><span class="linenos">245</span></a>        <span class="n">bdio_start_record</span><span class="p">(</span><span class="mh">0x00</span><span class="p">,</span> <span class="mi">8</span><span class="p">,</span> <span class="n">fbdio</span><span class="p">)</span>
+</span><span id="write_ADerrors-246"><a href="#write_ADerrors-246"><span class="linenos">246</span></a>
+</span><span id="write_ADerrors-247"><a href="#write_ADerrors-247"><span class="linenos">247</span></a>        <span class="k">def</span> <span class="nf">write_c_double</span><span class="p">(</span><span class="n">double</span><span class="p">):</span>
+</span><span id="write_ADerrors-248"><a href="#write_ADerrors-248"><span class="linenos">248</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span><span class="p">(</span><span class="n">double</span><span class="p">)</span>
+</span><span id="write_ADerrors-249"><a href="#write_ADerrors-249"><span class="linenos">249</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="write_ADerrors-250"><a href="#write_ADerrors-250"><span class="linenos">250</span></a>            <span class="n">bdio_write_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">8</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="write_ADerrors-251"><a href="#write_ADerrors-251"><span class="linenos">251</span></a>
+</span><span id="write_ADerrors-252"><a href="#write_ADerrors-252"><span class="linenos">252</span></a>        <span class="k">def</span> <span class="nf">write_c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">):</span>
+</span><span id="write_ADerrors-253"><a href="#write_ADerrors-253"><span class="linenos">253</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">int32</span><span class="p">)</span>
+</span><span id="write_ADerrors-254"><a href="#write_ADerrors-254"><span class="linenos">254</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="write_ADerrors-255"><a href="#write_ADerrors-255"><span class="linenos">255</span></a>            <span class="n">bdio_write_int32</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="mi">4</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="write_ADerrors-256"><a href="#write_ADerrors-256"><span class="linenos">256</span></a>
+</span><span id="write_ADerrors-257"><a href="#write_ADerrors-257"><span class="linenos">257</span></a>        <span class="n">write_c_double</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="write_ADerrors-258"><a href="#write_ADerrors-258"><span class="linenos">258</span></a>        <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">neid</span><span class="p">)</span>
+</span><span id="write_ADerrors-259"><a href="#write_ADerrors-259"><span class="linenos">259</span></a>
+</span><span id="write_ADerrors-260"><a href="#write_ADerrors-260"><span class="linenos">260</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ndata</span><span class="p">:</span>
+</span><span id="write_ADerrors-261"><a href="#write_ADerrors-261"><span class="linenos">261</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-262"><a href="#write_ADerrors-262"><span class="linenos">262</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nrep</span><span class="p">:</span>
+</span><span id="write_ADerrors-263"><a href="#write_ADerrors-263"><span class="linenos">263</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-264"><a href="#write_ADerrors-264"><span class="linenos">264</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">vrep_write</span><span class="p">:</span>
+</span><span id="write_ADerrors-265"><a href="#write_ADerrors-265"><span class="linenos">265</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-266"><a href="#write_ADerrors-266"><span class="linenos">266</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">ids</span><span class="p">:</span>
+</span><span id="write_ADerrors-267"><a href="#write_ADerrors-267"><span class="linenos">267</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-268"><a href="#write_ADerrors-268"><span class="linenos">268</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">nt</span><span class="p">:</span>
+</span><span id="write_ADerrors-269"><a href="#write_ADerrors-269"><span class="linenos">269</span></a>            <span class="n">write_c_size_t</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-270"><a href="#write_ADerrors-270"><span class="linenos">270</span></a>
+</span><span id="write_ADerrors-271"><a href="#write_ADerrors-271"><span class="linenos">271</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">zero</span><span class="p">:</span>
+</span><span id="write_ADerrors-272"><a href="#write_ADerrors-272"><span class="linenos">272</span></a>            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-273"><a href="#write_ADerrors-273"><span class="linenos">273</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">four</span><span class="p">:</span>
+</span><span id="write_ADerrors-274"><a href="#write_ADerrors-274"><span class="linenos">274</span></a>            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-275"><a href="#write_ADerrors-275"><span class="linenos">275</span></a>
+</span><span id="write_ADerrors-276"><a href="#write_ADerrors-276"><span class="linenos">276</span></a>        <span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">delta</span><span class="p">:</span>
+</span><span id="write_ADerrors-277"><a href="#write_ADerrors-277"><span class="linenos">277</span></a>            <span class="n">write_c_double</span><span class="p">(</span><span class="n">element</span><span class="p">)</span>
+</span><span id="write_ADerrors-278"><a href="#write_ADerrors-278"><span class="linenos">278</span></a>
+</span><span id="write_ADerrors-279"><a href="#write_ADerrors-279"><span class="linenos">279</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="write_ADerrors-280"><a href="#write_ADerrors-280"><span class="linenos">280</span></a>    <span class="k">return</span> <span class="mi">0</span>
+</span></pre></div>
 
         </details>
 
@@ -1110,215 +1110,215 @@ adding the flag -fPIC to CC and changing the all target to</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_mesons</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Extract mesons data from a bdio file and return it as a dictionary</span>
-
-<span class="sd">    The dictionary can be accessed with a tuple consisting of (type, source_position, kappa1, kappa2)</span>
-
-<span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path : str</span>
-<span class="sd">        path to the bdio file</span>
-<span class="sd">    bdio_path : str</span>
-<span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    start : int</span>
-<span class="sd">        The first configuration to be read (default 1)</span>
-<span class="sd">    stop : int</span>
-<span class="sd">        The last configuration to be read (default None)</span>
-<span class="sd">    step : int</span>
-<span class="sd">        Fixed step size between two measurements (default 1)</span>
-<span class="sd">    alternative_ensemble_name : str</span>
-<span class="sd">        Manually overwrite ensemble name</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
-    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
-    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
-    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
-    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
-    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contanis propagator types (Component of corr_kappa)</span>
-    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
-    <span class="n">d1</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># nnoise</span>
-    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
-    <span class="n">prop_source</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator source positions</span>
-    <span class="c1"># Check noise type for multiple replica?</span>
-    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
-    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
-    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="c1"># EOF reached</span>
-            <span class="k">break</span>
-        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">*</span> <span class="mi">2</span><span class="p">)</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">corr_type</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;complex&#39;</span><span class="p">:</span>
-                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="mi">2</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">-</span> <span class="n">d1</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-
-            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
-            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
-            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
-                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
-            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
-
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
-                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
-                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">),</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP1=&#39;</span><span class="p">)])</span>
-                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">d1</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">d1</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">d1</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">)):</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of random sources&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
-                <span class="n">prop_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;x0=&#39;</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
-                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
-                        <span class="k">break</span>
-                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
-                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
-
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;alternative_ensemble_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;alternative_ensemble_name&#39;</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble name overwritten to&#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of time values: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d1</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span>
-
-    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
-    <span class="n">corr_source</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
-        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]),</span> <span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])])])</span>
-        <span class="k">if</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]</span> <span class="o">!=</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Source position do not match for correlator&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">corr_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]))</span>
-
-    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl_target</span><span class="p">):</span>
-        <span class="k">try</span><span class="p">:</span>
-            <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
-        <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">indices</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-        <span class="n">tmp_corr</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">tmp_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">indices</span><span class="p">:</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">][</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">]</span>
-            <span class="n">tmp_corr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">]))</span>
-        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="n">corr_source</span><span class="p">[</span><span class="n">c</span><span class="p">])</span> <span class="o">+</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">])]</span> <span class="o">=</span> <span class="n">tmp_corr</span>
-
-    <span class="c1"># Check that all data entries have the same number of configurations</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_mesons-291"><a href="#read_mesons-291"><span class="linenos">291</span></a><span class="k">def</span> <span class="nf">read_mesons</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_mesons-292"><a href="#read_mesons-292"><span class="linenos">292</span></a>    <span class="sd">&quot;&quot;&quot; Extract mesons data from a bdio file and return it as a dictionary</span>
+</span><span id="read_mesons-293"><a href="#read_mesons-293"><span class="linenos">293</span></a>
+</span><span id="read_mesons-294"><a href="#read_mesons-294"><span class="linenos">294</span></a><span class="sd">    The dictionary can be accessed with a tuple consisting of (type, source_position, kappa1, kappa2)</span>
+</span><span id="read_mesons-295"><a href="#read_mesons-295"><span class="linenos">295</span></a>
+</span><span id="read_mesons-296"><a href="#read_mesons-296"><span class="linenos">296</span></a><span class="sd">    read_mesons requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="read_mesons-297"><a href="#read_mesons-297"><span class="linenos">297</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="read_mesons-298"><a href="#read_mesons-298"><span class="linenos">298</span></a>
+</span><span id="read_mesons-299"><a href="#read_mesons-299"><span class="linenos">299</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="read_mesons-300"><a href="#read_mesons-300"><span class="linenos">300</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="read_mesons-301"><a href="#read_mesons-301"><span class="linenos">301</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="read_mesons-302"><a href="#read_mesons-302"><span class="linenos">302</span></a>
+</span><span id="read_mesons-303"><a href="#read_mesons-303"><span class="linenos">303</span></a><span class="sd">    Parameters</span>
+</span><span id="read_mesons-304"><a href="#read_mesons-304"><span class="linenos">304</span></a><span class="sd">    ----------</span>
+</span><span id="read_mesons-305"><a href="#read_mesons-305"><span class="linenos">305</span></a><span class="sd">    file_path : str</span>
+</span><span id="read_mesons-306"><a href="#read_mesons-306"><span class="linenos">306</span></a><span class="sd">        path to the bdio file</span>
+</span><span id="read_mesons-307"><a href="#read_mesons-307"><span class="linenos">307</span></a><span class="sd">    bdio_path : str</span>
+</span><span id="read_mesons-308"><a href="#read_mesons-308"><span class="linenos">308</span></a><span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="read_mesons-309"><a href="#read_mesons-309"><span class="linenos">309</span></a><span class="sd">    start : int</span>
+</span><span id="read_mesons-310"><a href="#read_mesons-310"><span class="linenos">310</span></a><span class="sd">        The first configuration to be read (default 1)</span>
+</span><span id="read_mesons-311"><a href="#read_mesons-311"><span class="linenos">311</span></a><span class="sd">    stop : int</span>
+</span><span id="read_mesons-312"><a href="#read_mesons-312"><span class="linenos">312</span></a><span class="sd">        The last configuration to be read (default None)</span>
+</span><span id="read_mesons-313"><a href="#read_mesons-313"><span class="linenos">313</span></a><span class="sd">    step : int</span>
+</span><span id="read_mesons-314"><a href="#read_mesons-314"><span class="linenos">314</span></a><span class="sd">        Fixed step size between two measurements (default 1)</span>
+</span><span id="read_mesons-315"><a href="#read_mesons-315"><span class="linenos">315</span></a><span class="sd">    alternative_ensemble_name : str</span>
+</span><span id="read_mesons-316"><a href="#read_mesons-316"><span class="linenos">316</span></a><span class="sd">        Manually overwrite ensemble name</span>
+</span><span id="read_mesons-317"><a href="#read_mesons-317"><span class="linenos">317</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_mesons-318"><a href="#read_mesons-318"><span class="linenos">318</span></a>
+</span><span id="read_mesons-319"><a href="#read_mesons-319"><span class="linenos">319</span></a>    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="read_mesons-320"><a href="#read_mesons-320"><span class="linenos">320</span></a>    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="read_mesons-321"><a href="#read_mesons-321"><span class="linenos">321</span></a>    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="read_mesons-322"><a href="#read_mesons-322"><span class="linenos">322</span></a>
+</span><span id="read_mesons-323"><a href="#read_mesons-323"><span class="linenos">323</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="read_mesons-324"><a href="#read_mesons-324"><span class="linenos">324</span></a>
+</span><span id="read_mesons-325"><a href="#read_mesons-325"><span class="linenos">325</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="read_mesons-326"><a href="#read_mesons-326"><span class="linenos">326</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="read_mesons-327"><a href="#read_mesons-327"><span class="linenos">327</span></a>
+</span><span id="read_mesons-328"><a href="#read_mesons-328"><span class="linenos">328</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="read_mesons-329"><a href="#read_mesons-329"><span class="linenos">329</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_mesons-330"><a href="#read_mesons-330"><span class="linenos">330</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_mesons-331"><a href="#read_mesons-331"><span class="linenos">331</span></a>
+</span><span id="read_mesons-332"><a href="#read_mesons-332"><span class="linenos">332</span></a>    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
+</span><span id="read_mesons-333"><a href="#read_mesons-333"><span class="linenos">333</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_mesons-334"><a href="#read_mesons-334"><span class="linenos">334</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_mesons-335"><a href="#read_mesons-335"><span class="linenos">335</span></a>
+</span><span id="read_mesons-336"><a href="#read_mesons-336"><span class="linenos">336</span></a>    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
+</span><span id="read_mesons-337"><a href="#read_mesons-337"><span class="linenos">337</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_mesons-338"><a href="#read_mesons-338"><span class="linenos">338</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_mesons-339"><a href="#read_mesons-339"><span class="linenos">339</span></a>
+</span><span id="read_mesons-340"><a href="#read_mesons-340"><span class="linenos">340</span></a>    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
+</span><span id="read_mesons-341"><a href="#read_mesons-341"><span class="linenos">341</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_mesons-342"><a href="#read_mesons-342"><span class="linenos">342</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_mesons-343"><a href="#read_mesons-343"><span class="linenos">343</span></a>
+</span><span id="read_mesons-344"><a href="#read_mesons-344"><span class="linenos">344</span></a>    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
+</span><span id="read_mesons-345"><a href="#read_mesons-345"><span class="linenos">345</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_mesons-346"><a href="#read_mesons-346"><span class="linenos">346</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_mesons-347"><a href="#read_mesons-347"><span class="linenos">347</span></a>
+</span><span id="read_mesons-348"><a href="#read_mesons-348"><span class="linenos">348</span></a>    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
+</span><span id="read_mesons-349"><a href="#read_mesons-349"><span class="linenos">349</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_mesons-350"><a href="#read_mesons-350"><span class="linenos">350</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_mesons-351"><a href="#read_mesons-351"><span class="linenos">351</span></a>
+</span><span id="read_mesons-352"><a href="#read_mesons-352"><span class="linenos">352</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-353"><a href="#read_mesons-353"><span class="linenos">353</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
+</span><span id="read_mesons-354"><a href="#read_mesons-354"><span class="linenos">354</span></a>    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-355"><a href="#read_mesons-355"><span class="linenos">355</span></a>    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
+</span><span id="read_mesons-356"><a href="#read_mesons-356"><span class="linenos">356</span></a>    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-357"><a href="#read_mesons-357"><span class="linenos">357</span></a>
+</span><span id="read_mesons-358"><a href="#read_mesons-358"><span class="linenos">358</span></a>    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="read_mesons-359"><a href="#read_mesons-359"><span class="linenos">359</span></a>    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
+</span><span id="read_mesons-360"><a href="#read_mesons-360"><span class="linenos">360</span></a>    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_mesons-361"><a href="#read_mesons-361"><span class="linenos">361</span></a>    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
+</span><span id="read_mesons-362"><a href="#read_mesons-362"><span class="linenos">362</span></a>    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
+</span><span id="read_mesons-363"><a href="#read_mesons-363"><span class="linenos">363</span></a>    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contanis propagator types (Component of corr_kappa)</span>
+</span><span id="read_mesons-364"><a href="#read_mesons-364"><span class="linenos">364</span></a>    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
+</span><span id="read_mesons-365"><a href="#read_mesons-365"><span class="linenos">365</span></a>    <span class="n">d1</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># nnoise</span>
+</span><span id="read_mesons-366"><a href="#read_mesons-366"><span class="linenos">366</span></a>    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
+</span><span id="read_mesons-367"><a href="#read_mesons-367"><span class="linenos">367</span></a>    <span class="n">prop_source</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator source positions</span>
+</span><span id="read_mesons-368"><a href="#read_mesons-368"><span class="linenos">368</span></a>    <span class="c1"># Check noise type for multiple replica?</span>
+</span><span id="read_mesons-369"><a href="#read_mesons-369"><span class="linenos">369</span></a>    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+</span><span id="read_mesons-370"><a href="#read_mesons-370"><span class="linenos">370</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_mesons-371"><a href="#read_mesons-371"><span class="linenos">371</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_mesons-372"><a href="#read_mesons-372"><span class="linenos">372</span></a>
+</span><span id="read_mesons-373"><a href="#read_mesons-373"><span class="linenos">373</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
+</span><span id="read_mesons-374"><a href="#read_mesons-374"><span class="linenos">374</span></a>
+</span><span id="read_mesons-375"><a href="#read_mesons-375"><span class="linenos">375</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-376"><a href="#read_mesons-376"><span class="linenos">376</span></a>    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_mesons-377"><a href="#read_mesons-377"><span class="linenos">377</span></a>        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_mesons-378"><a href="#read_mesons-378"><span class="linenos">378</span></a>        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_mesons-379"><a href="#read_mesons-379"><span class="linenos">379</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_mesons-380"><a href="#read_mesons-380"><span class="linenos">380</span></a>            <span class="c1"># EOF reached</span>
+</span><span id="read_mesons-381"><a href="#read_mesons-381"><span class="linenos">381</span></a>            <span class="k">break</span>
+</span><span id="read_mesons-382"><a href="#read_mesons-382"><span class="linenos">382</span></a>        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_mesons-383"><a href="#read_mesons-383"><span class="linenos">383</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
+</span><span id="read_mesons-384"><a href="#read_mesons-384"><span class="linenos">384</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">*</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="read_mesons-385"><a href="#read_mesons-385"><span class="linenos">385</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="read_mesons-386"><a href="#read_mesons-386"><span class="linenos">386</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="read_mesons-387"><a href="#read_mesons-387"><span class="linenos">387</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="read_mesons-388"><a href="#read_mesons-388"><span class="linenos">388</span></a>            <span class="k">if</span> <span class="n">corr_type</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;complex&#39;</span><span class="p">:</span>
+</span><span id="read_mesons-389"><a href="#read_mesons-389"><span class="linenos">389</span></a>                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span> <span class="o">*</span> <span class="n">d1</span><span class="p">:</span><span class="mi">2</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="read_mesons-390"><a href="#read_mesons-390"><span class="linenos">390</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_mesons-391"><a href="#read_mesons-391"><span class="linenos">391</span></a>                <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d1</span><span class="p">:</span><span class="o">-</span><span class="n">d0</span> <span class="o">*</span> <span class="n">d1</span> <span class="o">-</span> <span class="n">d1</span><span class="p">]),</span> <span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="read_mesons-392"><a href="#read_mesons-392"><span class="linenos">392</span></a>
+</span><span id="read_mesons-393"><a href="#read_mesons-393"><span class="linenos">393</span></a>            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
+</span><span id="read_mesons-394"><a href="#read_mesons-394"><span class="linenos">394</span></a>            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="read_mesons-395"><a href="#read_mesons-395"><span class="linenos">395</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_mesons-396"><a href="#read_mesons-396"><span class="linenos">396</span></a>            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
+</span><span id="read_mesons-397"><a href="#read_mesons-397"><span class="linenos">397</span></a>            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
+</span><span id="read_mesons-398"><a href="#read_mesons-398"><span class="linenos">398</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="read_mesons-399"><a href="#read_mesons-399"><span class="linenos">399</span></a>            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
+</span><span id="read_mesons-400"><a href="#read_mesons-400"><span class="linenos">400</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-401"><a href="#read_mesons-401"><span class="linenos">401</span></a>            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
+</span><span id="read_mesons-402"><a href="#read_mesons-402"><span class="linenos">402</span></a>                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
+</span><span id="read_mesons-403"><a href="#read_mesons-403"><span class="linenos">403</span></a>                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
+</span><span id="read_mesons-404"><a href="#read_mesons-404"><span class="linenos">404</span></a>            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
+</span><span id="read_mesons-405"><a href="#read_mesons-405"><span class="linenos">405</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_mesons-406"><a href="#read_mesons-406"><span class="linenos">406</span></a>                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-407"><a href="#read_mesons-407"><span class="linenos">407</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
+</span><span id="read_mesons-408"><a href="#read_mesons-408"><span class="linenos">408</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
+</span><span id="read_mesons-409"><a href="#read_mesons-409"><span class="linenos">409</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
+</span><span id="read_mesons-410"><a href="#read_mesons-410"><span class="linenos">410</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
+</span><span id="read_mesons-411"><a href="#read_mesons-411"><span class="linenos">411</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-412"><a href="#read_mesons-412"><span class="linenos">412</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-413"><a href="#read_mesons-413"><span class="linenos">413</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-414"><a href="#read_mesons-414"><span class="linenos">414</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-415"><a href="#read_mesons-415"><span class="linenos">415</span></a>
+</span><span id="read_mesons-416"><a href="#read_mesons-416"><span class="linenos">416</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_mesons-417"><a href="#read_mesons-417"><span class="linenos">417</span></a>                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-418"><a href="#read_mesons-418"><span class="linenos">418</span></a>                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-419"><a href="#read_mesons-419"><span class="linenos">419</span></a>                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">),</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP1=&#39;</span><span class="p">)])</span>
+</span><span id="read_mesons-420"><a href="#read_mesons-420"><span class="linenos">420</span></a>                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_mesons-421"><a href="#read_mesons-421"><span class="linenos">421</span></a>                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-422"><a href="#read_mesons-422"><span class="linenos">422</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_mesons-423"><a href="#read_mesons-423"><span class="linenos">423</span></a>                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
+</span><span id="read_mesons-424"><a href="#read_mesons-424"><span class="linenos">424</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-425"><a href="#read_mesons-425"><span class="linenos">425</span></a>                <span class="k">if</span> <span class="n">d1</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_mesons-426"><a href="#read_mesons-426"><span class="linenos">426</span></a>                    <span class="n">d1</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-427"><a href="#read_mesons-427"><span class="linenos">427</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_mesons-428"><a href="#read_mesons-428"><span class="linenos">428</span></a>                    <span class="k">if</span> <span class="n">d1</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D1=&#39;</span><span class="p">)):</span>
+</span><span id="read_mesons-429"><a href="#read_mesons-429"><span class="linenos">429</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of random sources&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-430"><a href="#read_mesons-430"><span class="linenos">430</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="read_mesons-431"><a href="#read_mesons-431"><span class="linenos">431</span></a>                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-432"><a href="#read_mesons-432"><span class="linenos">432</span></a>                <span class="n">prop_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;x0=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-433"><a href="#read_mesons-433"><span class="linenos">433</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="read_mesons-434"><a href="#read_mesons-434"><span class="linenos">434</span></a>                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
+</span><span id="read_mesons-435"><a href="#read_mesons-435"><span class="linenos">435</span></a>                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
+</span><span id="read_mesons-436"><a href="#read_mesons-436"><span class="linenos">436</span></a>                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
+</span><span id="read_mesons-437"><a href="#read_mesons-437"><span class="linenos">437</span></a>                        <span class="k">break</span>
+</span><span id="read_mesons-438"><a href="#read_mesons-438"><span class="linenos">438</span></a>                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
+</span><span id="read_mesons-439"><a href="#read_mesons-439"><span class="linenos">439</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-440"><a href="#read_mesons-440"><span class="linenos">440</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_mesons-441"><a href="#read_mesons-441"><span class="linenos">441</span></a>                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
+</span><span id="read_mesons-442"><a href="#read_mesons-442"><span class="linenos">442</span></a>                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_mesons-443"><a href="#read_mesons-443"><span class="linenos">443</span></a>                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="read_mesons-444"><a href="#read_mesons-444"><span class="linenos">444</span></a>                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_mesons-445"><a href="#read_mesons-445"><span class="linenos">445</span></a>
+</span><span id="read_mesons-446"><a href="#read_mesons-446"><span class="linenos">446</span></a>                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_mesons-447"><a href="#read_mesons-447"><span class="linenos">447</span></a>
+</span><span id="read_mesons-448"><a href="#read_mesons-448"><span class="linenos">448</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_mesons-449"><a href="#read_mesons-449"><span class="linenos">449</span></a>
+</span><span id="read_mesons-450"><a href="#read_mesons-450"><span class="linenos">450</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
+</span><span id="read_mesons-451"><a href="#read_mesons-451"><span class="linenos">451</span></a>    <span class="k">if</span> <span class="s1">&#39;alternative_ensemble_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_mesons-452"><a href="#read_mesons-452"><span class="linenos">452</span></a>        <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;alternative_ensemble_name&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-453"><a href="#read_mesons-453"><span class="linenos">453</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble name overwritten to&#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
+</span><span id="read_mesons-454"><a href="#read_mesons-454"><span class="linenos">454</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
+</span><span id="read_mesons-455"><a href="#read_mesons-455"><span class="linenos">455</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
+</span><span id="read_mesons-456"><a href="#read_mesons-456"><span class="linenos">456</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of time values: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
+</span><span id="read_mesons-457"><a href="#read_mesons-457"><span class="linenos">457</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d1</span><span class="p">)</span>
+</span><span id="read_mesons-458"><a href="#read_mesons-458"><span class="linenos">458</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
+</span><span id="read_mesons-459"><a href="#read_mesons-459"><span class="linenos">459</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span>
+</span><span id="read_mesons-460"><a href="#read_mesons-460"><span class="linenos">460</span></a>
+</span><span id="read_mesons-461"><a href="#read_mesons-461"><span class="linenos">461</span></a>    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
+</span><span id="read_mesons-462"><a href="#read_mesons-462"><span class="linenos">462</span></a>    <span class="n">corr_source</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_mesons-463"><a href="#read_mesons-463"><span class="linenos">463</span></a>    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
+</span><span id="read_mesons-464"><a href="#read_mesons-464"><span class="linenos">464</span></a>        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]),</span> <span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])])])</span>
+</span><span id="read_mesons-465"><a href="#read_mesons-465"><span class="linenos">465</span></a>        <span class="k">if</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]</span> <span class="o">!=</span> <span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">1</span><span class="p">])]:</span>
+</span><span id="read_mesons-466"><a href="#read_mesons-466"><span class="linenos">466</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Source position do not match for correlator&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">item</span><span class="p">))</span>
+</span><span id="read_mesons-467"><a href="#read_mesons-467"><span class="linenos">467</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_mesons-468"><a href="#read_mesons-468"><span class="linenos">468</span></a>            <span class="n">corr_source</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">prop_source</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="mi">0</span><span class="p">])]))</span>
+</span><span id="read_mesons-469"><a href="#read_mesons-469"><span class="linenos">469</span></a>
+</span><span id="read_mesons-470"><a href="#read_mesons-470"><span class="linenos">470</span></a>    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_mesons-471"><a href="#read_mesons-471"><span class="linenos">471</span></a>        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="read_mesons-472"><a href="#read_mesons-472"><span class="linenos">472</span></a>    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
+</span><span id="read_mesons-473"><a href="#read_mesons-473"><span class="linenos">473</span></a>
+</span><span id="read_mesons-474"><a href="#read_mesons-474"><span class="linenos">474</span></a>    <span class="k">if</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">set</span><span class="p">(</span><span class="n">idl_target</span><span class="p">):</span>
+</span><span id="read_mesons-475"><a href="#read_mesons-475"><span class="linenos">475</span></a>        <span class="k">try</span><span class="p">:</span>
+</span><span id="read_mesons-476"><a href="#read_mesons-476"><span class="linenos">476</span></a>            <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
+</span><span id="read_mesons-477"><a href="#read_mesons-477"><span class="linenos">477</span></a>        <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
+</span><span id="read_mesons-478"><a href="#read_mesons-478"><span class="linenos">478</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
+</span><span id="read_mesons-479"><a href="#read_mesons-479"><span class="linenos">479</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_mesons-480"><a href="#read_mesons-480"><span class="linenos">480</span></a>        <span class="n">indices</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="read_mesons-481"><a href="#read_mesons-481"><span class="linenos">481</span></a>
+</span><span id="read_mesons-482"><a href="#read_mesons-482"><span class="linenos">482</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="read_mesons-483"><a href="#read_mesons-483"><span class="linenos">483</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="read_mesons-484"><a href="#read_mesons-484"><span class="linenos">484</span></a>        <span class="n">tmp_corr</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_mesons-485"><a href="#read_mesons-485"><span class="linenos">485</span></a>        <span class="n">tmp_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])</span>
+</span><span id="read_mesons-486"><a href="#read_mesons-486"><span class="linenos">486</span></a>        <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">d0</span> <span class="o">-</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="read_mesons-487"><a href="#read_mesons-487"><span class="linenos">487</span></a>            <span class="k">if</span> <span class="n">indices</span><span class="p">:</span>
+</span><span id="read_mesons-488"><a href="#read_mesons-488"><span class="linenos">488</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">][</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
+</span><span id="read_mesons-489"><a href="#read_mesons-489"><span class="linenos">489</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_mesons-490"><a href="#read_mesons-490"><span class="linenos">490</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="n">tmp_data</span><span class="p">[:,</span> <span class="n">t</span><span class="p">]</span>
+</span><span id="read_mesons-491"><a href="#read_mesons-491"><span class="linenos">491</span></a>            <span class="n">tmp_corr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">]))</span>
+</span><span id="read_mesons-492"><a href="#read_mesons-492"><span class="linenos">492</span></a>        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="n">corr_source</span><span class="p">[</span><span class="n">c</span><span class="p">])</span> <span class="o">+</span> <span class="nb">tuple</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">])]</span> <span class="o">=</span> <span class="n">tmp_corr</span>
+</span><span id="read_mesons-493"><a href="#read_mesons-493"><span class="linenos">493</span></a>
+</span><span id="read_mesons-494"><a href="#read_mesons-494"><span class="linenos">494</span></a>    <span class="c1"># Check that all data entries have the same number of configurations</span>
+</span><span id="read_mesons-495"><a href="#read_mesons-495"><span class="linenos">495</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_mesons-496"><a href="#read_mesons-496"><span class="linenos">496</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
+</span><span id="read_mesons-497"><a href="#read_mesons-497"><span class="linenos">497</span></a>
+</span><span id="read_mesons-498"><a href="#read_mesons-498"><span class="linenos">498</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -1363,186 +1363,186 @@ Manually overwrite ensemble name</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_dSdm</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Extract dSdm data from a bdio file and return it as a dictionary</span>
-
-<span class="sd">    The dictionary can be accessed with a tuple consisting of (type, kappa)</span>
-
-<span class="sd">    read_dSdm requires bdio to be compiled into a shared library. This can be achieved by</span>
-<span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
-
-<span class="sd">    all:		bdio.o $(LIBDIR)</span>
-<span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
-<span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    file_path : str</span>
-<span class="sd">        path to the bdio file</span>
-<span class="sd">    bdio_path : str</span>
-<span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
-<span class="sd">    start : int</span>
-<span class="sd">        The first configuration to be read (default 1)</span>
-<span class="sd">    stop : int</span>
-<span class="sd">        The last configuration to be read (default None)</span>
-<span class="sd">    step : int</span>
-<span class="sd">        Fixed step size between two measurements (default 1)</span>
-<span class="sd">    alternative_ensemble_name : str</span>
-<span class="sd">        Manually overwrite ensemble name</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
-
-    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
-
-    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
-    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
-
-    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
-    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
-    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
-
-    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
-    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
-    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-
-    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
-    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
-    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
-    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator types (Component of corr_kappa)</span>
-    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
-    <span class="c1"># d1 = 0  # nnoise</span>
-    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
-    <span class="c1"># Check noise type for multiple replica?</span>
-    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
-    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
-    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="c1"># EOF reached</span>
-            <span class="k">break</span>
-        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
-            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span><span class="p">)</span>
-            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
-            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span><span class="p">:]))</span>
-
-            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
-            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
-            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
-            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
-                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
-            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">creator</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CREATOR=&#39;</span><span class="p">)</span>
-                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
-                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
-                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
-
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
-                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
-                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
-                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
-                        <span class="k">break</span>
-                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
-                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
-                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Creator: &#39;</span><span class="p">,</span> <span class="n">creator</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="n">cnfg_no</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-
-    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
-    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
-        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">)]))</span>
-
-    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
-    <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
-
-    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
-        <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])[</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
-        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="nb">str</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">]))]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">])</span>
-
-    <span class="c1"># Check that all data entries have the same number of configurations</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_dSdm-501"><a href="#read_dSdm-501"><span class="linenos">501</span></a><span class="k">def</span> <span class="nf">read_dSdm</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="n">bdio_path</span><span class="o">=</span><span class="s1">&#39;./libbdio.so&#39;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_dSdm-502"><a href="#read_dSdm-502"><span class="linenos">502</span></a>    <span class="sd">&quot;&quot;&quot; Extract dSdm data from a bdio file and return it as a dictionary</span>
+</span><span id="read_dSdm-503"><a href="#read_dSdm-503"><span class="linenos">503</span></a>
+</span><span id="read_dSdm-504"><a href="#read_dSdm-504"><span class="linenos">504</span></a><span class="sd">    The dictionary can be accessed with a tuple consisting of (type, kappa)</span>
+</span><span id="read_dSdm-505"><a href="#read_dSdm-505"><span class="linenos">505</span></a>
+</span><span id="read_dSdm-506"><a href="#read_dSdm-506"><span class="linenos">506</span></a><span class="sd">    read_dSdm requires bdio to be compiled into a shared library. This can be achieved by</span>
+</span><span id="read_dSdm-507"><a href="#read_dSdm-507"><span class="linenos">507</span></a><span class="sd">    adding the flag -fPIC to CC and changing the all target to</span>
+</span><span id="read_dSdm-508"><a href="#read_dSdm-508"><span class="linenos">508</span></a>
+</span><span id="read_dSdm-509"><a href="#read_dSdm-509"><span class="linenos">509</span></a><span class="sd">    all:		bdio.o $(LIBDIR)</span>
+</span><span id="read_dSdm-510"><a href="#read_dSdm-510"><span class="linenos">510</span></a><span class="sd">                gcc -shared -Wl,-soname,libbdio.so -o $(BUILDDIR)/libbdio.so $(BUILDDIR)/bdio.o</span>
+</span><span id="read_dSdm-511"><a href="#read_dSdm-511"><span class="linenos">511</span></a><span class="sd">                cp $(BUILDDIR)/libbdio.so $(LIBDIR)/</span>
+</span><span id="read_dSdm-512"><a href="#read_dSdm-512"><span class="linenos">512</span></a>
+</span><span id="read_dSdm-513"><a href="#read_dSdm-513"><span class="linenos">513</span></a><span class="sd">    Parameters</span>
+</span><span id="read_dSdm-514"><a href="#read_dSdm-514"><span class="linenos">514</span></a><span class="sd">    ----------</span>
+</span><span id="read_dSdm-515"><a href="#read_dSdm-515"><span class="linenos">515</span></a><span class="sd">    file_path : str</span>
+</span><span id="read_dSdm-516"><a href="#read_dSdm-516"><span class="linenos">516</span></a><span class="sd">        path to the bdio file</span>
+</span><span id="read_dSdm-517"><a href="#read_dSdm-517"><span class="linenos">517</span></a><span class="sd">    bdio_path : str</span>
+</span><span id="read_dSdm-518"><a href="#read_dSdm-518"><span class="linenos">518</span></a><span class="sd">        path to the shared bdio library libbdio.so (default ./libbdio.so)</span>
+</span><span id="read_dSdm-519"><a href="#read_dSdm-519"><span class="linenos">519</span></a><span class="sd">    start : int</span>
+</span><span id="read_dSdm-520"><a href="#read_dSdm-520"><span class="linenos">520</span></a><span class="sd">        The first configuration to be read (default 1)</span>
+</span><span id="read_dSdm-521"><a href="#read_dSdm-521"><span class="linenos">521</span></a><span class="sd">    stop : int</span>
+</span><span id="read_dSdm-522"><a href="#read_dSdm-522"><span class="linenos">522</span></a><span class="sd">        The last configuration to be read (default None)</span>
+</span><span id="read_dSdm-523"><a href="#read_dSdm-523"><span class="linenos">523</span></a><span class="sd">    step : int</span>
+</span><span id="read_dSdm-524"><a href="#read_dSdm-524"><span class="linenos">524</span></a><span class="sd">        Fixed step size between two measurements (default 1)</span>
+</span><span id="read_dSdm-525"><a href="#read_dSdm-525"><span class="linenos">525</span></a><span class="sd">    alternative_ensemble_name : str</span>
+</span><span id="read_dSdm-526"><a href="#read_dSdm-526"><span class="linenos">526</span></a><span class="sd">        Manually overwrite ensemble name</span>
+</span><span id="read_dSdm-527"><a href="#read_dSdm-527"><span class="linenos">527</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_dSdm-528"><a href="#read_dSdm-528"><span class="linenos">528</span></a>
+</span><span id="read_dSdm-529"><a href="#read_dSdm-529"><span class="linenos">529</span></a>    <span class="n">start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;start&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="read_dSdm-530"><a href="#read_dSdm-530"><span class="linenos">530</span></a>    <span class="n">stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="read_dSdm-531"><a href="#read_dSdm-531"><span class="linenos">531</span></a>    <span class="n">step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;step&#39;</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="read_dSdm-532"><a href="#read_dSdm-532"><span class="linenos">532</span></a>
+</span><span id="read_dSdm-533"><a href="#read_dSdm-533"><span class="linenos">533</span></a>    <span class="n">bdio</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">cdll</span><span class="o">.</span><span class="n">LoadLibrary</span><span class="p">(</span><span class="n">bdio_path</span><span class="p">)</span>
+</span><span id="read_dSdm-534"><a href="#read_dSdm-534"><span class="linenos">534</span></a>
+</span><span id="read_dSdm-535"><a href="#read_dSdm-535"><span class="linenos">535</span></a>    <span class="n">bdio_open</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_open</span>
+</span><span id="read_dSdm-536"><a href="#read_dSdm-536"><span class="linenos">536</span></a>    <span class="n">bdio_open</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span>
+</span><span id="read_dSdm-537"><a href="#read_dSdm-537"><span class="linenos">537</span></a>
+</span><span id="read_dSdm-538"><a href="#read_dSdm-538"><span class="linenos">538</span></a>    <span class="n">bdio_close</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_close</span>
+</span><span id="read_dSdm-539"><a href="#read_dSdm-539"><span class="linenos">539</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_dSdm-540"><a href="#read_dSdm-540"><span class="linenos">540</span></a>    <span class="n">bdio_close</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_dSdm-541"><a href="#read_dSdm-541"><span class="linenos">541</span></a>
+</span><span id="read_dSdm-542"><a href="#read_dSdm-542"><span class="linenos">542</span></a>    <span class="n">bdio_seek_record</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_seek_record</span>
+</span><span id="read_dSdm-543"><a href="#read_dSdm-543"><span class="linenos">543</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_dSdm-544"><a href="#read_dSdm-544"><span class="linenos">544</span></a>    <span class="n">bdio_seek_record</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_dSdm-545"><a href="#read_dSdm-545"><span class="linenos">545</span></a>
+</span><span id="read_dSdm-546"><a href="#read_dSdm-546"><span class="linenos">546</span></a>    <span class="n">bdio_get_rlen</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_rlen</span>
+</span><span id="read_dSdm-547"><a href="#read_dSdm-547"><span class="linenos">547</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_dSdm-548"><a href="#read_dSdm-548"><span class="linenos">548</span></a>    <span class="n">bdio_get_rlen</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_dSdm-549"><a href="#read_dSdm-549"><span class="linenos">549</span></a>
+</span><span id="read_dSdm-550"><a href="#read_dSdm-550"><span class="linenos">550</span></a>    <span class="n">bdio_get_ruinfo</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_get_ruinfo</span>
+</span><span id="read_dSdm-551"><a href="#read_dSdm-551"><span class="linenos">551</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_int</span>
+</span><span id="read_dSdm-552"><a href="#read_dSdm-552"><span class="linenos">552</span></a>    <span class="n">bdio_get_ruinfo</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_dSdm-553"><a href="#read_dSdm-553"><span class="linenos">553</span></a>
+</span><span id="read_dSdm-554"><a href="#read_dSdm-554"><span class="linenos">554</span></a>    <span class="n">bdio_read</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read</span>
+</span><span id="read_dSdm-555"><a href="#read_dSdm-555"><span class="linenos">555</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_dSdm-556"><a href="#read_dSdm-556"><span class="linenos">556</span></a>    <span class="n">bdio_read</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_dSdm-557"><a href="#read_dSdm-557"><span class="linenos">557</span></a>
+</span><span id="read_dSdm-558"><a href="#read_dSdm-558"><span class="linenos">558</span></a>    <span class="n">bdio_read_f64</span> <span class="o">=</span> <span class="n">bdio</span><span class="o">.</span><span class="n">bdio_read_f64</span>
+</span><span id="read_dSdm-559"><a href="#read_dSdm-559"><span class="linenos">559</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">restype</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span>
+</span><span id="read_dSdm-560"><a href="#read_dSdm-560"><span class="linenos">560</span></a>    <span class="n">bdio_read_f64</span><span class="o">.</span><span class="n">argtypes</span> <span class="o">=</span> <span class="p">[</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">]</span>
+</span><span id="read_dSdm-561"><a href="#read_dSdm-561"><span class="linenos">561</span></a>
+</span><span id="read_dSdm-562"><a href="#read_dSdm-562"><span class="linenos">562</span></a>    <span class="n">b_path</span> <span class="o">=</span> <span class="n">file_path</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-563"><a href="#read_dSdm-563"><span class="linenos">563</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="s1">&#39;r&#39;</span>
+</span><span id="read_dSdm-564"><a href="#read_dSdm-564"><span class="linenos">564</span></a>    <span class="n">b_read</span> <span class="o">=</span> <span class="n">read</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-565"><a href="#read_dSdm-565"><span class="linenos">565</span></a>    <span class="n">form</span> <span class="o">=</span> <span class="s1">&#39;Generic Correlator Format 1.0&#39;</span>
+</span><span id="read_dSdm-566"><a href="#read_dSdm-566"><span class="linenos">566</span></a>    <span class="n">b_form</span> <span class="o">=</span> <span class="n">form</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-567"><a href="#read_dSdm-567"><span class="linenos">567</span></a>
+</span><span id="read_dSdm-568"><a href="#read_dSdm-568"><span class="linenos">568</span></a>    <span class="n">ensemble_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="read_dSdm-569"><a href="#read_dSdm-569"><span class="linenos">569</span></a>    <span class="n">volume</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># lattice volume</span>
+</span><span id="read_dSdm-570"><a href="#read_dSdm-570"><span class="linenos">570</span></a>    <span class="n">boundary_conditions</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_dSdm-571"><a href="#read_dSdm-571"><span class="linenos">571</span></a>    <span class="n">corr_name</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator names</span>
+</span><span id="read_dSdm-572"><a href="#read_dSdm-572"><span class="linenos">572</span></a>    <span class="n">corr_type</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains correlator data type (important for reading out numerical data)</span>
+</span><span id="read_dSdm-573"><a href="#read_dSdm-573"><span class="linenos">573</span></a>    <span class="n">corr_props</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator types (Component of corr_kappa)</span>
+</span><span id="read_dSdm-574"><a href="#read_dSdm-574"><span class="linenos">574</span></a>    <span class="n">d0</span> <span class="o">=</span> <span class="mi">0</span>  <span class="c1"># tvals</span>
+</span><span id="read_dSdm-575"><a href="#read_dSdm-575"><span class="linenos">575</span></a>    <span class="c1"># d1 = 0  # nnoise</span>
+</span><span id="read_dSdm-576"><a href="#read_dSdm-576"><span class="linenos">576</span></a>    <span class="n">prop_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains propagator kappas (Component of corr_kappa)</span>
+</span><span id="read_dSdm-577"><a href="#read_dSdm-577"><span class="linenos">577</span></a>    <span class="c1"># Check noise type for multiple replica?</span>
+</span><span id="read_dSdm-578"><a href="#read_dSdm-578"><span class="linenos">578</span></a>    <span class="n">corr_no</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+</span><span id="read_dSdm-579"><a href="#read_dSdm-579"><span class="linenos">579</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_dSdm-580"><a href="#read_dSdm-580"><span class="linenos">580</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_dSdm-581"><a href="#read_dSdm-581"><span class="linenos">581</span></a>
+</span><span id="read_dSdm-582"><a href="#read_dSdm-582"><span class="linenos">582</span></a>    <span class="n">fbdio</span> <span class="o">=</span> <span class="n">bdio_open</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_path</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_read</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">b_form</span><span class="p">))</span>
+</span><span id="read_dSdm-583"><a href="#read_dSdm-583"><span class="linenos">583</span></a>
+</span><span id="read_dSdm-584"><a href="#read_dSdm-584"><span class="linenos">584</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Reading of bdio file started&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-585"><a href="#read_dSdm-585"><span class="linenos">585</span></a>    <span class="k">while</span> <span class="mi">1</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_dSdm-586"><a href="#read_dSdm-586"><span class="linenos">586</span></a>        <span class="n">bdio_seek_record</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_dSdm-587"><a href="#read_dSdm-587"><span class="linenos">587</span></a>        <span class="n">ruinfo</span> <span class="o">=</span> <span class="n">bdio_get_ruinfo</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_dSdm-588"><a href="#read_dSdm-588"><span class="linenos">588</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_dSdm-589"><a href="#read_dSdm-589"><span class="linenos">589</span></a>            <span class="c1"># EOF reached</span>
+</span><span id="read_dSdm-590"><a href="#read_dSdm-590"><span class="linenos">590</span></a>            <span class="k">break</span>
+</span><span id="read_dSdm-591"><a href="#read_dSdm-591"><span class="linenos">591</span></a>        <span class="n">rlen</span> <span class="o">=</span> <span class="n">bdio_get_rlen</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_dSdm-592"><a href="#read_dSdm-592"><span class="linenos">592</span></a>        <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">5</span><span class="p">:</span>
+</span><span id="read_dSdm-593"><a href="#read_dSdm-593"><span class="linenos">593</span></a>            <span class="n">d_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_double</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">+</span> <span class="n">d0</span><span class="p">)</span>
+</span><span id="read_dSdm-594"><a href="#read_dSdm-594"><span class="linenos">594</span></a>            <span class="n">pd_buf</span> <span class="o">=</span> <span class="n">d_buf</span><span class="p">()</span>
+</span><span id="read_dSdm-595"><a href="#read_dSdm-595"><span class="linenos">595</span></a>            <span class="n">ppd_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">))</span>
+</span><span id="read_dSdm-596"><a href="#read_dSdm-596"><span class="linenos">596</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read_f64</span><span class="p">(</span><span class="n">ppd_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="read_dSdm-597"><a href="#read_dSdm-597"><span class="linenos">597</span></a>            <span class="n">tmp_mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">pd_buf</span><span class="p">[</span><span class="mi">2</span><span class="p">:]))</span>
+</span><span id="read_dSdm-598"><a href="#read_dSdm-598"><span class="linenos">598</span></a>
+</span><span id="read_dSdm-599"><a href="#read_dSdm-599"><span class="linenos">599</span></a>            <span class="n">data</span><span class="p">[</span><span class="n">corr_no</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_mean</span><span class="p">)</span>
+</span><span id="read_dSdm-600"><a href="#read_dSdm-600"><span class="linenos">600</span></a>            <span class="n">corr_no</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="read_dSdm-601"><a href="#read_dSdm-601"><span class="linenos">601</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_dSdm-602"><a href="#read_dSdm-602"><span class="linenos">602</span></a>            <span class="n">alt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">create_string_buffer</span><span class="p">(</span><span class="mi">1024</span><span class="p">)</span>
+</span><span id="read_dSdm-603"><a href="#read_dSdm-603"><span class="linenos">603</span></a>            <span class="n">palt_buf</span> <span class="o">=</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_char_p</span><span class="p">(</span><span class="n">ctypes</span><span class="o">.</span><span class="n">addressof</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">))</span>
+</span><span id="read_dSdm-604"><a href="#read_dSdm-604"><span class="linenos">604</span></a>            <span class="n">iread</span> <span class="o">=</span> <span class="n">bdio_read</span><span class="p">(</span><span class="n">palt_buf</span><span class="p">,</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_size_t</span><span class="p">(</span><span class="n">rlen</span><span class="p">),</span> <span class="n">ctypes</span><span class="o">.</span><span class="n">c_void_p</span><span class="p">(</span><span class="n">fbdio</span><span class="p">))</span>
+</span><span id="read_dSdm-605"><a href="#read_dSdm-605"><span class="linenos">605</span></a>            <span class="k">if</span> <span class="n">rlen</span> <span class="o">!=</span> <span class="n">iread</span><span class="p">:</span>
+</span><span id="read_dSdm-606"><a href="#read_dSdm-606"><span class="linenos">606</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-607"><a href="#read_dSdm-607"><span class="linenos">607</span></a>            <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">alt_buf</span><span class="p">):</span>
+</span><span id="read_dSdm-608"><a href="#read_dSdm-608"><span class="linenos">608</span></a>                <span class="k">if</span> <span class="n">item</span> <span class="o">==</span> <span class="sa">b</span><span class="s1">&#39;</span><span class="se">\x00</span><span class="s1">&#39;</span><span class="p">:</span>
+</span><span id="read_dSdm-609"><a href="#read_dSdm-609"><span class="linenos">609</span></a>                    <span class="n">alt_buf</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="sa">b</span><span class="s1">&#39; &#39;</span>
+</span><span id="read_dSdm-610"><a href="#read_dSdm-610"><span class="linenos">610</span></a>            <span class="n">tmp_string</span> <span class="o">=</span> <span class="p">(</span><span class="n">alt_buf</span><span class="p">[:]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s2">&quot;utf-8&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">rstrip</span><span class="p">()</span>
+</span><span id="read_dSdm-611"><a href="#read_dSdm-611"><span class="linenos">611</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_dSdm-612"><a href="#read_dSdm-612"><span class="linenos">612</span></a>                <span class="n">creator</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CREATOR=&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-613"><a href="#read_dSdm-613"><span class="linenos">613</span></a>                <span class="n">ensemble_name</span> <span class="o">=</span> <span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;ENSEMBLE=&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-614"><a href="#read_dSdm-614"><span class="linenos">614</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L0=&#39;</span><span class="p">)))</span>
+</span><span id="read_dSdm-615"><a href="#read_dSdm-615"><span class="linenos">615</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L1=&#39;</span><span class="p">)))</span>
+</span><span id="read_dSdm-616"><a href="#read_dSdm-616"><span class="linenos">616</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L2=&#39;</span><span class="p">)))</span>
+</span><span id="read_dSdm-617"><a href="#read_dSdm-617"><span class="linenos">617</span></a>                <span class="n">volume</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;L3=&#39;</span><span class="p">)))</span>
+</span><span id="read_dSdm-618"><a href="#read_dSdm-618"><span class="linenos">618</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC0=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-619"><a href="#read_dSdm-619"><span class="linenos">619</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC1=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-620"><a href="#read_dSdm-620"><span class="linenos">620</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC2=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-621"><a href="#read_dSdm-621"><span class="linenos">621</span></a>                <span class="n">boundary_conditions</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;BC3=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-622"><a href="#read_dSdm-622"><span class="linenos">622</span></a>
+</span><span id="read_dSdm-623"><a href="#read_dSdm-623"><span class="linenos">623</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_dSdm-624"><a href="#read_dSdm-624"><span class="linenos">624</span></a>                <span class="n">corr_name</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_corr_name</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CORR_NAME=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-625"><a href="#read_dSdm-625"><span class="linenos">625</span></a>                <span class="n">corr_type</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;DATATYPE=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-626"><a href="#read_dSdm-626"><span class="linenos">626</span></a>                <span class="n">corr_props</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;PROP0=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-627"><a href="#read_dSdm-627"><span class="linenos">627</span></a>                <span class="k">if</span> <span class="n">d0</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_dSdm-628"><a href="#read_dSdm-628"><span class="linenos">628</span></a>                    <span class="n">d0</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-629"><a href="#read_dSdm-629"><span class="linenos">629</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_dSdm-630"><a href="#read_dSdm-630"><span class="linenos">630</span></a>                    <span class="k">if</span> <span class="n">d0</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;D0=&#39;</span><span class="p">)):</span>
+</span><span id="read_dSdm-631"><a href="#read_dSdm-631"><span class="linenos">631</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Error: Varying number of time values&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-632"><a href="#read_dSdm-632"><span class="linenos">632</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="read_dSdm-633"><a href="#read_dSdm-633"><span class="linenos">633</span></a>                <span class="n">prop_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;KAPPA=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-634"><a href="#read_dSdm-634"><span class="linenos">634</span></a>            <span class="k">if</span> <span class="n">ruinfo</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="read_dSdm-635"><a href="#read_dSdm-635"><span class="linenos">635</span></a>                <span class="n">cnfg_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">_get_kwd</span><span class="p">(</span><span class="n">tmp_string</span><span class="p">,</span> <span class="s1">&#39;CNFG_ID=&#39;</span><span class="p">))</span>
+</span><span id="read_dSdm-636"><a href="#read_dSdm-636"><span class="linenos">636</span></a>                <span class="k">if</span> <span class="n">stop</span><span class="p">:</span>
+</span><span id="read_dSdm-637"><a href="#read_dSdm-637"><span class="linenos">637</span></a>                    <span class="k">if</span> <span class="n">cnfg_no</span> <span class="o">&gt;</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;stop&#39;</span><span class="p">):</span>
+</span><span id="read_dSdm-638"><a href="#read_dSdm-638"><span class="linenos">638</span></a>                        <span class="k">break</span>
+</span><span id="read_dSdm-639"><a href="#read_dSdm-639"><span class="linenos">639</span></a>                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg_no</span><span class="p">)</span>
+</span><span id="read_dSdm-640"><a href="#read_dSdm-640"><span class="linenos">640</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\r</span><span class="si">%s</span><span class="s1"> </span><span class="si">%i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="s1">&#39;Reading configuration&#39;</span><span class="p">,</span> <span class="n">cnfg_no</span><span class="p">),</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\r</span><span class="s1">&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-641"><a href="#read_dSdm-641"><span class="linenos">641</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_dSdm-642"><a href="#read_dSdm-642"><span class="linenos">642</span></a>                    <span class="n">no_corrs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">)</span>
+</span><span id="read_dSdm-643"><a href="#read_dSdm-643"><span class="linenos">643</span></a>                    <span class="n">data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_dSdm-644"><a href="#read_dSdm-644"><span class="linenos">644</span></a>                    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="read_dSdm-645"><a href="#read_dSdm-645"><span class="linenos">645</span></a>                        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_dSdm-646"><a href="#read_dSdm-646"><span class="linenos">646</span></a>
+</span><span id="read_dSdm-647"><a href="#read_dSdm-647"><span class="linenos">647</span></a>                <span class="n">corr_no</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_dSdm-648"><a href="#read_dSdm-648"><span class="linenos">648</span></a>    <span class="n">bdio_close</span><span class="p">(</span><span class="n">fbdio</span><span class="p">)</span>
+</span><span id="read_dSdm-649"><a href="#read_dSdm-649"><span class="linenos">649</span></a>
+</span><span id="read_dSdm-650"><a href="#read_dSdm-650"><span class="linenos">650</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">Creator: &#39;</span><span class="p">,</span> <span class="n">creator</span><span class="p">)</span>
+</span><span id="read_dSdm-651"><a href="#read_dSdm-651"><span class="linenos">651</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Ensemble: &#39;</span><span class="p">,</span> <span class="n">ensemble_name</span><span class="p">)</span>
+</span><span id="read_dSdm-652"><a href="#read_dSdm-652"><span class="linenos">652</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Lattice volume: &#39;</span><span class="p">,</span> <span class="n">volume</span><span class="p">)</span>
+</span><span id="read_dSdm-653"><a href="#read_dSdm-653"><span class="linenos">653</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Boundary conditions: &#39;</span><span class="p">,</span> <span class="n">boundary_conditions</span><span class="p">)</span>
+</span><span id="read_dSdm-654"><a href="#read_dSdm-654"><span class="linenos">654</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of random sources: &#39;</span><span class="p">,</span> <span class="n">d0</span><span class="p">)</span>
+</span><span id="read_dSdm-655"><a href="#read_dSdm-655"><span class="linenos">655</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of corrs: &#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">corr_name</span><span class="p">))</span>
+</span><span id="read_dSdm-656"><a href="#read_dSdm-656"><span class="linenos">656</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Number of configurations: &#39;</span><span class="p">,</span> <span class="n">cnfg_no</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="read_dSdm-657"><a href="#read_dSdm-657"><span class="linenos">657</span></a>
+</span><span id="read_dSdm-658"><a href="#read_dSdm-658"><span class="linenos">658</span></a>    <span class="n">corr_kappa</span> <span class="o">=</span> <span class="p">[]</span>  <span class="c1"># Contains kappa values for both propagators of given correlation function</span>
+</span><span id="read_dSdm-659"><a href="#read_dSdm-659"><span class="linenos">659</span></a>    <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">corr_props</span><span class="p">:</span>
+</span><span id="read_dSdm-660"><a href="#read_dSdm-660"><span class="linenos">660</span></a>        <span class="n">corr_kappa</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">prop_kappa</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">item</span><span class="p">)]))</span>
+</span><span id="read_dSdm-661"><a href="#read_dSdm-661"><span class="linenos">661</span></a>
+</span><span id="read_dSdm-662"><a href="#read_dSdm-662"><span class="linenos">662</span></a>    <span class="k">if</span> <span class="n">stop</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_dSdm-663"><a href="#read_dSdm-663"><span class="linenos">663</span></a>        <span class="n">stop</span> <span class="o">=</span> <span class="n">idl</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="read_dSdm-664"><a href="#read_dSdm-664"><span class="linenos">664</span></a>    <span class="n">idl_target</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="n">stop</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">step</span><span class="p">)</span>
+</span><span id="read_dSdm-665"><a href="#read_dSdm-665"><span class="linenos">665</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="read_dSdm-666"><a href="#read_dSdm-666"><span class="linenos">666</span></a>        <span class="n">indices</span> <span class="o">=</span> <span class="p">[</span><span class="n">idl</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">idl_target</span><span class="p">]</span>
+</span><span id="read_dSdm-667"><a href="#read_dSdm-667"><span class="linenos">667</span></a>    <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">err</span><span class="p">:</span>
+</span><span id="read_dSdm-668"><a href="#read_dSdm-668"><span class="linenos">668</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Configurations in file do no match target list!&#39;</span><span class="p">,</span> <span class="n">err</span><span class="p">)</span>
+</span><span id="read_dSdm-669"><a href="#read_dSdm-669"><span class="linenos">669</span></a>
+</span><span id="read_dSdm-670"><a href="#read_dSdm-670"><span class="linenos">670</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="read_dSdm-671"><a href="#read_dSdm-671"><span class="linenos">671</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_corrs</span><span class="p">):</span>
+</span><span id="read_dSdm-672"><a href="#read_dSdm-672"><span class="linenos">672</span></a>        <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">c</span><span class="p">])[</span><span class="n">index</span><span class="p">]</span> <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">indices</span><span class="p">]</span>
+</span><span id="read_dSdm-673"><a href="#read_dSdm-673"><span class="linenos">673</span></a>        <span class="n">result</span><span class="p">[(</span><span class="n">corr_name</span><span class="p">[</span><span class="n">c</span><span class="p">],</span> <span class="nb">str</span><span class="p">(</span><span class="n">corr_kappa</span><span class="p">[</span><span class="n">c</span><span class="p">]))]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">deltas</span><span class="p">],</span> <span class="p">[</span><span class="n">ensemble_name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_target</span><span class="p">])</span>
+</span><span id="read_dSdm-674"><a href="#read_dSdm-674"><span class="linenos">674</span></a>
+</span><span id="read_dSdm-675"><a href="#read_dSdm-675"><span class="linenos">675</span></a>    <span class="c1"># Check that all data entries have the same number of configurations</span>
+</span><span id="read_dSdm-676"><a href="#read_dSdm-676"><span class="linenos">676</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">result</span><span class="o">.</span><span class="n">values</span><span class="p">())]))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_dSdm-677"><a href="#read_dSdm-677"><span class="linenos">677</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not all correlators have the same number of configurations. bdio file is possibly corrupted.&#39;</span><span class="p">)</span>
+</span><span id="read_dSdm-678"><a href="#read_dSdm-678"><span class="linenos">678</span></a>
+</span><span id="read_dSdm-679"><a href="#read_dSdm-679"><span class="linenos">679</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input/hadrons.html b/docs/pyerrors/input/hadrons.html
index 9f7bbbf9..95d118ca 100644
--- a/docs/pyerrors/input/hadrons.html
+++ b/docs/pyerrors/input/hadrons.html
@@ -3,14 +3,14 @@
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@@ -75,7 +75,7 @@
 
 
 
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@@ -90,364 +90,364 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">Counter</span>
-<span class="kn">import</span> <span class="nn">h5py</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span>
-<span class="kn">from</span> <span class="nn">..correlators</span> <span class="kn">import</span> <span class="n">Corr</span>
-<span class="kn">from</span> <span class="nn">..dirac</span> <span class="kn">import</span> <span class="n">epsilon_tensor_rank4</span>
-
-
-<span class="k">def</span> <span class="nf">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-    <span class="n">ls</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
-
-    <span class="c1"># Clean up file list</span>
-    <span class="n">files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">filestem</span><span class="p">),</span> <span class="n">ls</span><span class="p">))</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">files</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No files starting with&#39;</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="s1">&#39;in folder&#39;</span><span class="p">,</span> <span class="n">path</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">get_cnfg_number</span><span class="p">(</span><span class="n">n</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">n</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">filestem</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">3</span><span class="p">])</span>
-
-    <span class="c1"># Sort according to configuration number</span>
-    <span class="n">files</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="n">get_cnfg_number</span><span class="p">)</span>
-
-    <span class="n">cnfg_numbers</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">filtered_files</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">no</span> <span class="o">=</span> <span class="n">get_cnfg_number</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">idl</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">no</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">idl</span><span class="p">):</span>
-                <span class="n">filtered_files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
-                <span class="n">cnfg_numbers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">no</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">filtered_files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
-            <span class="n">cnfg_numbers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">no</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">idl</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">Counter</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span> <span class="o">!=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Not all configurations specified in idl found, configurations &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">Counter</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span> <span class="o">-</span> <span class="n">Counter</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">)))</span> <span class="o">+</span> <span class="s2">&quot; are missing.&quot;</span><span class="p">)</span>
-
-    <span class="c1"># Check that configurations are evenly spaced</span>
-    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">))</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted files&quot;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="n">idx</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">cnfg_numbers</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">elif</span> <span class="n">idl</span><span class="p">:</span>
-        <span class="n">idx</span> <span class="o">=</span> <span class="n">idl</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Configurations are not evenly spaced.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Configurations are not evenly spaced.&quot;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">filtered_files</span><span class="p">,</span> <span class="n">idx</span>
-
-
-<span class="k">def</span> <span class="nf">read_meson_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">meson</span><span class="o">=</span><span class="s1">&#39;meson_0&#39;</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons meson hdf5 file and extract the meson labeled &#39;meson&#39;</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    meson : str</span>
-<span class="sd">        label of the meson to be extracted, standard value meson_0 which</span>
-<span class="sd">        corresponds to the pseudoscalar pseudoscalar two-point function.</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">tree</span> <span class="o">=</span> <span class="n">meson</span><span class="o">.</span><span class="n">rsplit</span><span class="p">(</span><span class="s1">&#39;_&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">infos</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">h5file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Entry &#39;&quot;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s2">&quot;&#39; not contained in the files.&quot;</span><span class="p">)</span>
-        <span class="n">raw_data</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">])</span>
-        <span class="n">real_data</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raw_data</span><span class="p">]</span>
-        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">real_data</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">infos</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="n">infos</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="n">i</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
-        <span class="n">h5file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
-
-    <span class="n">l_obs</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-        <span class="n">l_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">c</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">]))</span>
-
-    <span class="n">corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">(</span><span class="n">l_obs</span><span class="p">)</span>
-    <span class="n">corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="sa">r</span><span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">infos</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">corr</span>
-
-
-<span class="k">class</span> <span class="nc">Npr_matrix</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-
-    <span class="k">def</span> <span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">input_array</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="n">obj</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">input_array</span><span class="p">)</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="n">obj</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="n">mom_in</span>
-        <span class="n">obj</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="n">mom_out</span>
-        <span class="k">return</span> <span class="n">obj</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">g5H</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Gamma_5 hermitean conjugate</span>
-
-<span class="sd">        Uses the fact that the propagator is gamma5 hermitean, so just the</span>
-<span class="sd">        in and out momenta of the propagator are exchanged.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                          <span class="n">mom_in</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span><span class="p">,</span>
-                          <span class="n">mom_out</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_propagate_mom</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
-        <span class="n">s_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-        <span class="n">o_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">s_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">s_mom</span><span class="p">,</span> <span class="n">o_mom</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">name</span> <span class="o">+</span> <span class="s1">&#39; does not match.&#39;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">o_mom</span> <span class="k">if</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">s_mom</span>
-
-    <span class="k">def</span> <span class="fm">__matmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="n">Npr_matrix</span><span class="p">,</span>
-                            <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__matmul__</span><span class="p">(</span><span class="n">other</span><span class="p">),</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">),</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">__array_finalize__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
-        <span class="k">if</span> <span class="n">obj</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">return</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">read_ExternalLeg_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons ExternalLeg hdf5 file and output an array of CObs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">mom</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-        <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
-        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">mom</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">mom</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
-
-    <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">corr_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
-
-    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-        <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">read_Bilinear_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons Bilinear hdf5 file and output an array of CObs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
-    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">16</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gamma&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
-                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
-            <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-
-        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-        <span class="n">local_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-
-        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">local_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
-
-        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
-
-        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result_dict</span>
-
-
-<span class="k">def</span> <span class="nf">read_Fourquark_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vertices</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;VA&quot;</span><span class="p">,</span> <span class="s2">&quot;AV&quot;</span><span class="p">]):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons FourquarkFullyConnected hdf5 file and output an array of CObs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    vertices : list</span>
-<span class="sd">        Vertex functions to be extracted.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
-    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">vertex_names</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
-        <span class="n">vertex_names</span> <span class="o">+=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
-
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="n">tree</span> <span class="o">=</span> <span class="s1">&#39;FourQuarkFullyConnected/FourQuarkFullyConnected_&#39;</span>
-
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">32</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaA&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">),</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaB&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">vertex_names</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
-                    <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
-                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-
-        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="n">intermediate_dict</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
-        <span class="n">lorentz_names</span> <span class="o">=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="n">lorentz_names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="p">[(</span><span class="s1">&#39;SigmaXY&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">),</span>
-                          <span class="p">(</span><span class="s1">&#39;SigmaXT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">),</span>
-                          <span class="p">(</span><span class="s1">&#39;SigmaYZ&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">),</span>
-                          <span class="p">(</span><span class="s1">&#39;SigmaZT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">)]:</span>
-                <span class="n">sign</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">sign</span> <span class="o">=</span> <span class="mi">1</span>
-            <span class="k">if</span> <span class="n">vertex</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="p">:</span>
-                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">+=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
-
-    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-
-        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">moveaxis</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">8</span><span class="p">)</span>
-
-        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
-
-        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result_dict</span>
-
-
-<span class="k">def</span> <span class="nf">_get_lorentz_names</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
-    <span class="n">lorentz_index</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;X&#39;</span><span class="p">,</span> <span class="s1">&#39;Y&#39;</span><span class="p">,</span> <span class="s1">&#39;Z&#39;</span><span class="p">,</span> <span class="s1">&#39;T&#39;</span><span class="p">]</span>
-
-    <span class="n">res</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">if</span> <span class="n">name</span> <span class="o">==</span> <span class="s2">&quot;TT&quot;</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">):</span>
-                <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">j</span><span class="p">],</span> <span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">j</span><span class="p">]))</span>
-        <span class="k">return</span> <span class="n">res</span>
-
-    <span class="k">if</span> <span class="n">name</span> <span class="o">==</span> <span class="s2">&quot;TTtilde&quot;</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
-            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
-                    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">):</span>
-                        <span class="n">fac</span> <span class="o">=</span> <span class="n">epsilon_tensor_rank4</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
-                        <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="n">fac</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">):</span>
-                            <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">j</span><span class="p">],</span> <span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">o</span><span class="p">]))</span>
-        <span class="k">return</span> <span class="n">res</span>
-
-    <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span>
-
-    <span class="k">if</span> <span class="s1">&#39;S&#39;</span> <span class="ow">in</span> <span class="n">name</span> <span class="ow">or</span> <span class="s1">&#39;P&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">([</span><span class="s1">&#39;S&#39;</span><span class="p">,</span> <span class="s1">&#39;P&#39;</span><span class="p">]):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;&quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot;&#39; is not a Lorentz scalar&quot;</span><span class="p">)</span>
-
-        <span class="n">g_names</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;S&#39;</span><span class="p">:</span> <span class="s1">&#39;Identity&#39;</span><span class="p">,</span>
-                   <span class="s1">&#39;P&#39;</span><span class="p">:</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">}</span>
-
-        <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">g_names</span><span class="p">[</span><span class="n">name</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">g_names</span><span class="p">[</span><span class="n">name</span><span class="p">[</span><span class="mi">1</span><span class="p">]]))</span>
-
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">([</span><span class="s1">&#39;V&#39;</span><span class="p">,</span> <span class="s1">&#39;A&#39;</span><span class="p">]):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;&quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot;&#39; is not a Lorentz scalar&quot;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">ind</span> <span class="ow">in</span> <span class="n">lorentz_index</span><span class="p">:</span>
-            <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="s1">&#39;Gamma&#39;</span> <span class="o">+</span> <span class="n">ind</span> <span class="o">+</span> <span class="p">(</span><span class="n">name</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;A&#39;</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">,</span>
-                        <span class="s1">&#39;Gamma&#39;</span> <span class="o">+</span> <span class="n">ind</span> <span class="o">+</span> <span class="p">(</span><span class="n">name</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;A&#39;</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">))</span>
-
-    <span class="k">return</span> <span class="n">res</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">os</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">warnings</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">from</span> <span class="nn">collections</span> <span class="kn">import</span> <span class="n">Counter</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="kn">import</span> <span class="nn">h5py</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">CObs</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="kn">from</span> <span class="nn">..correlators</span> <span class="kn">import</span> <span class="n">Corr</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a><span class="kn">from</span> <span class="nn">..dirac</span> <span class="kn">import</span> <span class="n">epsilon_tensor_rank4</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="k">def</span> <span class="nf">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">listdir</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a>    <span class="c1"># Clean up file list</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a>    <span class="n">files</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">filestem</span><span class="p">),</span> <span class="n">ls</span><span class="p">))</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No files starting with&#39;</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="s1">&#39;in folder&#39;</span><span class="p">,</span> <span class="n">path</span><span class="p">)</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a>    <span class="k">def</span> <span class="nf">get_cnfg_number</span><span class="p">(</span><span class="n">n</span><span class="p">):</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a>        <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">n</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">filestem</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">3</span><span class="p">])</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a>    <span class="c1"># Sort according to configuration number</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a>    <span class="n">files</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="n">get_cnfg_number</span><span class="p">)</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a>    <span class="n">cnfg_numbers</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>    <span class="n">filtered_files</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>    <span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a>        <span class="n">no</span> <span class="o">=</span> <span class="n">get_cnfg_number</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a>        <span class="k">if</span> <span class="n">idl</span><span class="p">:</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a>            <span class="k">if</span> <span class="n">no</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">idl</span><span class="p">):</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a>                <span class="n">filtered_files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a>                <span class="n">cnfg_numbers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">no</span><span class="p">)</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>            <span class="n">filtered_files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">line</span><span class="p">)</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>            <span class="n">cnfg_numbers</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">no</span><span class="p">)</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>    <span class="k">if</span> <span class="n">idl</span><span class="p">:</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>        <span class="k">if</span> <span class="n">Counter</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span> <span class="o">!=</span> <span class="n">Counter</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">):</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Not all configurations specified in idl found, configurations &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">Counter</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">idl</span><span class="p">))</span> <span class="o">-</span> <span class="n">Counter</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">)))</span> <span class="o">+</span> <span class="s2">&quot; are missing.&quot;</span><span class="p">)</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a>    <span class="c1"># Check that configurations are evenly spaced</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">))</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted files&quot;</span><span class="p">)</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>        <span class="n">idx</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">cnfg_numbers</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">cnfg_numbers</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>    <span class="k">elif</span> <span class="n">idl</span><span class="p">:</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>        <span class="n">idx</span> <span class="o">=</span> <span class="n">idl</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Configurations are not evenly spaced.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Configurations are not evenly spaced.&quot;</span><span class="p">)</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>    <span class="k">return</span> <span class="n">filtered_files</span><span class="p">,</span> <span class="n">idx</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a><span class="k">def</span> <span class="nf">read_meson_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">meson</span><span class="o">=</span><span class="s1">&#39;meson_0&#39;</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons meson hdf5 file and extract the meson labeled &#39;meson&#39;</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a><span class="sd">    Parameters</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a><span class="sd">    -----------------</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a><span class="sd">    path : str</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a><span class="sd">        path to the files to read</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a><span class="sd">    filestem : str</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a><span class="sd">    ens_id : str</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a><span class="sd">    meson : str</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a><span class="sd">        label of the meson to be extracted, standard value meson_0 which</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a><span class="sd">        corresponds to the pseudoscalar pseudoscalar two-point function.</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a><span class="sd">    idl : range</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>    <span class="n">tree</span> <span class="o">=</span> <span class="n">meson</span><span class="o">.</span><span class="n">rsplit</span><span class="p">(</span><span class="s1">&#39;_&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>    <span class="n">infos</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>        <span class="n">h5file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Entry &#39;&quot;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s2">&quot;&#39; not contained in the files.&quot;</span><span class="p">)</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>        <span class="n">raw_data</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">])</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a>        <span class="n">real_data</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raw_data</span><span class="p">]</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">real_data</span><span class="p">)</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">infos</span><span class="p">:</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>            <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>                <span class="n">infos</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="n">i</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>        <span class="n">h5file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>    <span class="n">l_obs</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>        <span class="n">l_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">c</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">]))</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>    <span class="n">corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">(</span><span class="n">l_obs</span><span class="p">)</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>    <span class="n">corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="sa">r</span><span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">infos</span><span class="p">)</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>    <span class="k">return</span> <span class="n">corr</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a><span class="k">class</span> <span class="nc">Npr_matrix</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>    <span class="k">def</span> <span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">input_array</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>        <span class="n">obj</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">input_array</span><span class="p">)</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>        <span class="n">obj</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="n">mom_in</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a>        <span class="n">obj</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="n">mom_out</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>        <span class="k">return</span> <span class="n">obj</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>    <span class="nd">@property</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>    <span class="k">def</span> <span class="nf">g5H</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>        <span class="sd">&quot;&quot;&quot;Gamma_5 hermitean conjugate</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a><span class="sd">        Uses the fact that the propagator is gamma5 hermitean, so just the</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a><span class="sd">        in and out momenta of the propagator are exchanged.</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>        <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>                          <span class="n">mom_in</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span><span class="p">,</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>                          <span class="n">mom_out</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span><span class="p">)</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>    <span class="k">def</span> <span class="nf">_propagate_mom</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>        <span class="n">s_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>        <span class="n">o_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>        <span class="k">if</span> <span class="n">s_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">s_mom</span><span class="p">,</span> <span class="n">o_mom</span><span class="p">):</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">name</span> <span class="o">+</span> <span class="s1">&#39; does not match.&#39;</span><span class="p">)</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a>        <span class="k">return</span> <span class="n">o_mom</span> <span class="k">if</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">s_mom</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a>    <span class="k">def</span> <span class="fm">__matmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="n">Npr_matrix</span><span class="p">,</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a>                            <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__matmul__</span><span class="p">(</span><span class="n">other</span><span class="p">),</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">),</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">))</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a>    <span class="k">def</span> <span class="nf">__array_finalize__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a>        <span class="k">if</span> <span class="n">obj</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a>            <span class="k">return</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a><span class="k">def</span> <span class="nf">read_ExternalLeg_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons ExternalLeg hdf5 file and output an array of CObs</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a><span class="sd">    Parameters</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a><span class="sd">    ----------</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a><span class="sd">    path : str</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a><span class="sd">        path to the files to read</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a><span class="sd">    filestem : str</span>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a><span class="sd">    ens_id : str</span>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a><span class="sd">    idl : range</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a>    <span class="n">mom</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a>        <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a>        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a>        <span class="k">if</span> <span class="n">mom</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a>            <span class="n">mom</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a>        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a>    <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">corr_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a>    <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>        <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a>        <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a>        <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>    <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom</span><span class="p">)</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a><span class="k">def</span> <span class="nf">read_Bilinear_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons Bilinear hdf5 file and output an array of CObs</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a><span class="sd">    Parameters</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a><span class="sd">    ----------</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a><span class="sd">    path : str</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a><span class="sd">        path to the files to read</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a><span class="sd">    filestem : str</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a><span class="sd">    ens_id : str</span>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a><span class="sd">    idl : range</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a>    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a>    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a>        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">16</span><span class="p">):</span>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gamma&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">)</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a>                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a>            <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a>            <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>            <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a>                <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a>            <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>                <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a>        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a>    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a>        <span class="n">local_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a>        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">local_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>        <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a>            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a>            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>            <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a>    <span class="k">return</span> <span class="n">result_dict</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a><span class="k">def</span> <span class="nf">read_Fourquark_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vertices</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;VA&quot;</span><span class="p">,</span> <span class="s2">&quot;AV&quot;</span><span class="p">]):</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons FourquarkFullyConnected hdf5 file and output an array of CObs</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a><span class="sd">    Parameters</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a><span class="sd">    ----------</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a><span class="sd">    path : str</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a><span class="sd">        path to the files to read</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a><span class="sd">    filestem : str</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a><span class="sd">    ens_id : str</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a><span class="sd">    idl : range</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a><span class="sd">    vertices : list</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a><span class="sd">        Vertex functions to be extracted.</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a>    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a>    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a>    <span class="n">vertex_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a>    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a>        <span class="n">vertex_names</span> <span class="o">+=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a>    <span class="n">tree</span> <span class="o">=</span> <span class="s1">&#39;FourQuarkFullyConnected/FourQuarkFullyConnected_&#39;</span>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a>        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">32</span><span class="p">):</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaA&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">),</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaB&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">))</span>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">vertex_names</span><span class="p">:</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a>                <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a>                    <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a>                <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a>                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a>                <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a>                    <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a>                <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a>                    <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a>        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a>
+</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a>    <span class="n">intermediate_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a>
+</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a>    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
+</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a>        <span class="n">lorentz_names</span> <span class="o">=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
+</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a>        <span class="k">for</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="n">lorentz_names</span><span class="p">:</span>
+</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a>            <span class="k">if</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="p">[(</span><span class="s1">&#39;SigmaXY&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">),</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a>                          <span class="p">(</span><span class="s1">&#39;SigmaXT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">),</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a>                          <span class="p">(</span><span class="s1">&#39;SigmaYZ&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">),</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a>                          <span class="p">(</span><span class="s1">&#39;SigmaZT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">)]:</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>                <span class="n">sign</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a>                <span class="n">sign</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a>            <span class="k">if</span> <span class="n">vertex</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="p">:</span>
+</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a>                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a>                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">+=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
+</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a>
+</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a>    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a>
+</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a>    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a>
+</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a>        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">moveaxis</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">8</span><span class="p">)</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a>
+</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a>        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a>            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a>            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a>            <span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a>
+</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a>        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a>
+</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a>    <span class="k">return</span> <span class="n">result_dict</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a>
+</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a>
+</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a><span class="k">def</span> <span class="nf">_get_lorentz_names</span><span class="p">(</span><span class="n">name</span><span class="p">):</span>
+</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a>    <span class="n">lorentz_index</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;X&#39;</span><span class="p">,</span> <span class="s1">&#39;Y&#39;</span><span class="p">,</span> <span class="s1">&#39;Z&#39;</span><span class="p">,</span> <span class="s1">&#39;T&#39;</span><span class="p">]</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a>
+</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a>    <span class="n">res</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a>
+</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a>    <span class="k">if</span> <span class="n">name</span> <span class="o">==</span> <span class="s2">&quot;TT&quot;</span><span class="p">:</span>
+</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a>            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a>                <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">j</span><span class="p">],</span> <span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">j</span><span class="p">]))</span>
+</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a>
+</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a>    <span class="k">if</span> <span class="n">name</span> <span class="o">==</span> <span class="s2">&quot;TTtilde&quot;</span><span class="p">:</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a>            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a>                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">4</span><span class="p">):</span>
+</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a>                    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a>                        <span class="n">fac</span> <span class="o">=</span> <span class="n">epsilon_tensor_rank4</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a>                        <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="n">fac</span><span class="p">,</span> <span class="mf">0.0</span><span class="p">):</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a>                            <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">j</span><span class="p">],</span> <span class="s2">&quot;Sigma&quot;</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">+</span> <span class="n">lorentz_index</span><span class="p">[</span><span class="n">o</span><span class="p">]))</span>
+</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a>
+</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a>    <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a>
+</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>    <span class="k">if</span> <span class="s1">&#39;S&#39;</span> <span class="ow">in</span> <span class="n">name</span> <span class="ow">or</span> <span class="s1">&#39;P&#39;</span> <span class="ow">in</span> <span class="n">name</span><span class="p">:</span>
+</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">([</span><span class="s1">&#39;S&#39;</span><span class="p">,</span> <span class="s1">&#39;P&#39;</span><span class="p">]):</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;&quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot;&#39; is not a Lorentz scalar&quot;</span><span class="p">)</span>
+</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a>
+</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a>        <span class="n">g_names</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;S&#39;</span><span class="p">:</span> <span class="s1">&#39;Identity&#39;</span><span class="p">,</span>
+</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a>                   <span class="s1">&#39;P&#39;</span><span class="p">:</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">}</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a>
+</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a>        <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">g_names</span><span class="p">[</span><span class="n">name</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="n">g_names</span><span class="p">[</span><span class="n">name</span><span class="p">[</span><span class="mi">1</span><span class="p">]]))</span>
+</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a>
+</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="nb">set</span><span class="p">([</span><span class="s1">&#39;V&#39;</span><span class="p">,</span> <span class="s1">&#39;A&#39;</span><span class="p">]):</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;&quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot;&#39; is not a Lorentz scalar&quot;</span><span class="p">)</span>
+</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a>
+</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a>        <span class="k">for</span> <span class="n">ind</span> <span class="ow">in</span> <span class="n">lorentz_index</span><span class="p">:</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a>            <span class="n">res</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="s1">&#39;Gamma&#39;</span> <span class="o">+</span> <span class="n">ind</span> <span class="o">+</span> <span class="p">(</span><span class="n">name</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;A&#39;</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">,</span>
+</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a>                        <span class="s1">&#39;Gamma&#39;</span> <span class="o">+</span> <span class="n">ind</span> <span class="o">+</span> <span class="p">(</span><span class="n">name</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;A&#39;</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;Gamma5&#39;</span><span class="p">))</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a>
+</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a>    <span class="k">return</span> <span class="n">res</span>
+</span></pre></div>
 
         </details>
 
@@ -462,50 +462,50 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_meson_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">meson</span><span class="o">=</span><span class="s1">&#39;meson_0&#39;</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons meson hdf5 file and extract the meson labeled &#39;meson&#39;</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    meson : str</span>
-<span class="sd">        label of the meson to be extracted, standard value meson_0 which</span>
-<span class="sd">        corresponds to the pseudoscalar pseudoscalar two-point function.</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">tree</span> <span class="o">=</span> <span class="n">meson</span><span class="o">.</span><span class="n">rsplit</span><span class="p">(</span><span class="s1">&#39;_&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">infos</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">h5file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Entry &#39;&quot;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s2">&quot;&#39; not contained in the files.&quot;</span><span class="p">)</span>
-        <span class="n">raw_data</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">])</span>
-        <span class="n">real_data</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raw_data</span><span class="p">]</span>
-        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">real_data</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">infos</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-                <span class="n">infos</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="n">i</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
-        <span class="n">h5file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
-
-    <span class="n">l_obs</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
-        <span class="n">l_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">c</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">]))</span>
-
-    <span class="n">corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">(</span><span class="n">l_obs</span><span class="p">)</span>
-    <span class="n">corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="sa">r</span><span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">infos</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">corr</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_meson_hd5-57"><a href="#read_meson_hd5-57"><span class="linenos">57</span></a><span class="k">def</span> <span class="nf">read_meson_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">meson</span><span class="o">=</span><span class="s1">&#39;meson_0&#39;</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="read_meson_hd5-58"><a href="#read_meson_hd5-58"><span class="linenos">58</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons meson hdf5 file and extract the meson labeled &#39;meson&#39;</span>
+</span><span id="read_meson_hd5-59"><a href="#read_meson_hd5-59"><span class="linenos">59</span></a>
+</span><span id="read_meson_hd5-60"><a href="#read_meson_hd5-60"><span class="linenos">60</span></a><span class="sd">    Parameters</span>
+</span><span id="read_meson_hd5-61"><a href="#read_meson_hd5-61"><span class="linenos">61</span></a><span class="sd">    -----------------</span>
+</span><span id="read_meson_hd5-62"><a href="#read_meson_hd5-62"><span class="linenos">62</span></a><span class="sd">    path : str</span>
+</span><span id="read_meson_hd5-63"><a href="#read_meson_hd5-63"><span class="linenos">63</span></a><span class="sd">        path to the files to read</span>
+</span><span id="read_meson_hd5-64"><a href="#read_meson_hd5-64"><span class="linenos">64</span></a><span class="sd">    filestem : str</span>
+</span><span id="read_meson_hd5-65"><a href="#read_meson_hd5-65"><span class="linenos">65</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="read_meson_hd5-66"><a href="#read_meson_hd5-66"><span class="linenos">66</span></a><span class="sd">    ens_id : str</span>
+</span><span id="read_meson_hd5-67"><a href="#read_meson_hd5-67"><span class="linenos">67</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="read_meson_hd5-68"><a href="#read_meson_hd5-68"><span class="linenos">68</span></a><span class="sd">    meson : str</span>
+</span><span id="read_meson_hd5-69"><a href="#read_meson_hd5-69"><span class="linenos">69</span></a><span class="sd">        label of the meson to be extracted, standard value meson_0 which</span>
+</span><span id="read_meson_hd5-70"><a href="#read_meson_hd5-70"><span class="linenos">70</span></a><span class="sd">        corresponds to the pseudoscalar pseudoscalar two-point function.</span>
+</span><span id="read_meson_hd5-71"><a href="#read_meson_hd5-71"><span class="linenos">71</span></a><span class="sd">    idl : range</span>
+</span><span id="read_meson_hd5-72"><a href="#read_meson_hd5-72"><span class="linenos">72</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="read_meson_hd5-73"><a href="#read_meson_hd5-73"><span class="linenos">73</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_meson_hd5-74"><a href="#read_meson_hd5-74"><span class="linenos">74</span></a>
+</span><span id="read_meson_hd5-75"><a href="#read_meson_hd5-75"><span class="linenos">75</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="read_meson_hd5-76"><a href="#read_meson_hd5-76"><span class="linenos">76</span></a>
+</span><span id="read_meson_hd5-77"><a href="#read_meson_hd5-77"><span class="linenos">77</span></a>    <span class="n">tree</span> <span class="o">=</span> <span class="n">meson</span><span class="o">.</span><span class="n">rsplit</span><span class="p">(</span><span class="s1">&#39;_&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_meson_hd5-78"><a href="#read_meson_hd5-78"><span class="linenos">78</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_meson_hd5-79"><a href="#read_meson_hd5-79"><span class="linenos">79</span></a>    <span class="n">infos</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_meson_hd5-80"><a href="#read_meson_hd5-80"><span class="linenos">80</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="read_meson_hd5-81"><a href="#read_meson_hd5-81"><span class="linenos">81</span></a>        <span class="n">h5file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="read_meson_hd5-82"><a href="#read_meson_hd5-82"><span class="linenos">82</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
+</span><span id="read_meson_hd5-83"><a href="#read_meson_hd5-83"><span class="linenos">83</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Entry &#39;&quot;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s2">&quot;&#39; not contained in the files.&quot;</span><span class="p">)</span>
+</span><span id="read_meson_hd5-84"><a href="#read_meson_hd5-84"><span class="linenos">84</span></a>        <span class="n">raw_data</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">])</span>
+</span><span id="read_meson_hd5-85"><a href="#read_meson_hd5-85"><span class="linenos">85</span></a>        <span class="n">real_data</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raw_data</span><span class="p">]</span>
+</span><span id="read_meson_hd5-86"><a href="#read_meson_hd5-86"><span class="linenos">86</span></a>        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">real_data</span><span class="p">)</span>
+</span><span id="read_meson_hd5-87"><a href="#read_meson_hd5-87"><span class="linenos">87</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">infos</span><span class="p">:</span>
+</span><span id="read_meson_hd5-88"><a href="#read_meson_hd5-88"><span class="linenos">88</span></a>            <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">meson</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="read_meson_hd5-89"><a href="#read_meson_hd5-89"><span class="linenos">89</span></a>                <span class="n">infos</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span> <span class="o">+</span> <span class="s1">&#39;: &#39;</span> <span class="o">+</span> <span class="n">i</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
+</span><span id="read_meson_hd5-90"><a href="#read_meson_hd5-90"><span class="linenos">90</span></a>        <span class="n">h5file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="read_meson_hd5-91"><a href="#read_meson_hd5-91"><span class="linenos">91</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
+</span><span id="read_meson_hd5-92"><a href="#read_meson_hd5-92"><span class="linenos">92</span></a>
+</span><span id="read_meson_hd5-93"><a href="#read_meson_hd5-93"><span class="linenos">93</span></a>    <span class="n">l_obs</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_meson_hd5-94"><a href="#read_meson_hd5-94"><span class="linenos">94</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">:</span>
+</span><span id="read_meson_hd5-95"><a href="#read_meson_hd5-95"><span class="linenos">95</span></a>        <span class="n">l_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">c</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">]))</span>
+</span><span id="read_meson_hd5-96"><a href="#read_meson_hd5-96"><span class="linenos">96</span></a>
+</span><span id="read_meson_hd5-97"><a href="#read_meson_hd5-97"><span class="linenos">97</span></a>    <span class="n">corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">(</span><span class="n">l_obs</span><span class="p">)</span>
+</span><span id="read_meson_hd5-98"><a href="#read_meson_hd5-98"><span class="linenos">98</span></a>    <span class="n">corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="sa">r</span><span class="s2">&quot;, &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">infos</span><span class="p">)</span>
+</span><span id="read_meson_hd5-99"><a href="#read_meson_hd5-99"><span class="linenos">99</span></a>    <span class="k">return</span> <span class="n">corr</span>
+</span></pre></div>
 
         </details>
 
@@ -541,45 +541,45 @@ If specified only configurations in the given range are read in.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">class</span> <span class="nc">Npr_matrix</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-
-    <span class="k">def</span> <span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">input_array</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="n">obj</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">input_array</span><span class="p">)</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
-        <span class="n">obj</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="n">mom_in</span>
-        <span class="n">obj</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="n">mom_out</span>
-        <span class="k">return</span> <span class="n">obj</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">g5H</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Gamma_5 hermitean conjugate</span>
-
-<span class="sd">        Uses the fact that the propagator is gamma5 hermitean, so just the</span>
-<span class="sd">        in and out momenta of the propagator are exchanged.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
-                          <span class="n">mom_in</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span><span class="p">,</span>
-                          <span class="n">mom_out</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_propagate_mom</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
-        <span class="n">s_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-        <span class="n">o_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">s_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">s_mom</span><span class="p">,</span> <span class="n">o_mom</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">name</span> <span class="o">+</span> <span class="s1">&#39; does not match.&#39;</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">o_mom</span> <span class="k">if</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">s_mom</span>
-
-    <span class="k">def</span> <span class="fm">__matmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="n">Npr_matrix</span><span class="p">,</span>
-                            <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__matmul__</span><span class="p">(</span><span class="n">other</span><span class="p">),</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">),</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">__array_finalize__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
-        <span class="k">if</span> <span class="n">obj</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">return</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Npr_matrix-102"><a href="#Npr_matrix-102"><span class="linenos">102</span></a><span class="k">class</span> <span class="nc">Npr_matrix</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Npr_matrix-103"><a href="#Npr_matrix-103"><span class="linenos">103</span></a>
+</span><span id="Npr_matrix-104"><a href="#Npr_matrix-104"><span class="linenos">104</span></a>    <span class="k">def</span> <span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">input_array</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Npr_matrix-105"><a href="#Npr_matrix-105"><span class="linenos">105</span></a>        <span class="n">obj</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">input_array</span><span class="p">)</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="bp">cls</span><span class="p">)</span>
+</span><span id="Npr_matrix-106"><a href="#Npr_matrix-106"><span class="linenos">106</span></a>        <span class="n">obj</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="n">mom_in</span>
+</span><span id="Npr_matrix-107"><a href="#Npr_matrix-107"><span class="linenos">107</span></a>        <span class="n">obj</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="n">mom_out</span>
+</span><span id="Npr_matrix-108"><a href="#Npr_matrix-108"><span class="linenos">108</span></a>        <span class="k">return</span> <span class="n">obj</span>
+</span><span id="Npr_matrix-109"><a href="#Npr_matrix-109"><span class="linenos">109</span></a>
+</span><span id="Npr_matrix-110"><a href="#Npr_matrix-110"><span class="linenos">110</span></a>    <span class="nd">@property</span>
+</span><span id="Npr_matrix-111"><a href="#Npr_matrix-111"><span class="linenos">111</span></a>    <span class="k">def</span> <span class="nf">g5H</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Npr_matrix-112"><a href="#Npr_matrix-112"><span class="linenos">112</span></a>        <span class="sd">&quot;&quot;&quot;Gamma_5 hermitean conjugate</span>
+</span><span id="Npr_matrix-113"><a href="#Npr_matrix-113"><span class="linenos">113</span></a>
+</span><span id="Npr_matrix-114"><a href="#Npr_matrix-114"><span class="linenos">114</span></a><span class="sd">        Uses the fact that the propagator is gamma5 hermitean, so just the</span>
+</span><span id="Npr_matrix-115"><a href="#Npr_matrix-115"><span class="linenos">115</span></a><span class="sd">        in and out momenta of the propagator are exchanged.</span>
+</span><span id="Npr_matrix-116"><a href="#Npr_matrix-116"><span class="linenos">116</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Npr_matrix-117"><a href="#Npr_matrix-117"><span class="linenos">117</span></a>        <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
+</span><span id="Npr_matrix-118"><a href="#Npr_matrix-118"><span class="linenos">118</span></a>                          <span class="n">mom_in</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span><span class="p">,</span>
+</span><span id="Npr_matrix-119"><a href="#Npr_matrix-119"><span class="linenos">119</span></a>                          <span class="n">mom_out</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span><span class="p">)</span>
+</span><span id="Npr_matrix-120"><a href="#Npr_matrix-120"><span class="linenos">120</span></a>
+</span><span id="Npr_matrix-121"><a href="#Npr_matrix-121"><span class="linenos">121</span></a>    <span class="k">def</span> <span class="nf">_propagate_mom</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">):</span>
+</span><span id="Npr_matrix-122"><a href="#Npr_matrix-122"><span class="linenos">122</span></a>        <span class="n">s_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="Npr_matrix-123"><a href="#Npr_matrix-123"><span class="linenos">123</span></a>        <span class="n">o_mom</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="Npr_matrix-124"><a href="#Npr_matrix-124"><span class="linenos">124</span></a>        <span class="k">if</span> <span class="n">s_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Npr_matrix-125"><a href="#Npr_matrix-125"><span class="linenos">125</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">s_mom</span><span class="p">,</span> <span class="n">o_mom</span><span class="p">):</span>
+</span><span id="Npr_matrix-126"><a href="#Npr_matrix-126"><span class="linenos">126</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">name</span> <span class="o">+</span> <span class="s1">&#39; does not match.&#39;</span><span class="p">)</span>
+</span><span id="Npr_matrix-127"><a href="#Npr_matrix-127"><span class="linenos">127</span></a>        <span class="k">return</span> <span class="n">o_mom</span> <span class="k">if</span> <span class="n">o_mom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">s_mom</span>
+</span><span id="Npr_matrix-128"><a href="#Npr_matrix-128"><span class="linenos">128</span></a>
+</span><span id="Npr_matrix-129"><a href="#Npr_matrix-129"><span class="linenos">129</span></a>    <span class="k">def</span> <span class="fm">__matmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="Npr_matrix-130"><a href="#Npr_matrix-130"><span class="linenos">130</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__new__</span><span class="p">(</span><span class="n">Npr_matrix</span><span class="p">,</span>
+</span><span id="Npr_matrix-131"><a href="#Npr_matrix-131"><span class="linenos">131</span></a>                            <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__matmul__</span><span class="p">(</span><span class="n">other</span><span class="p">),</span>
+</span><span id="Npr_matrix-132"><a href="#Npr_matrix-132"><span class="linenos">132</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">),</span>
+</span><span id="Npr_matrix-133"><a href="#Npr_matrix-133"><span class="linenos">133</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">_propagate_mom</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">))</span>
+</span><span id="Npr_matrix-134"><a href="#Npr_matrix-134"><span class="linenos">134</span></a>
+</span><span id="Npr_matrix-135"><a href="#Npr_matrix-135"><span class="linenos">135</span></a>    <span class="k">def</span> <span class="nf">__array_finalize__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
+</span><span id="Npr_matrix-136"><a href="#Npr_matrix-136"><span class="linenos">136</span></a>        <span class="k">if</span> <span class="n">obj</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Npr_matrix-137"><a href="#Npr_matrix-137"><span class="linenos">137</span></a>            <span class="k">return</span>
+</span><span id="Npr_matrix-138"><a href="#Npr_matrix-138"><span class="linenos">138</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">mom_in</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_in&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span><span id="Npr_matrix-139"><a href="#Npr_matrix-139"><span class="linenos">139</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">mom_out</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="s1">&#39;mom_out&#39;</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -827,45 +827,45 @@ in and out momenta of the propagator are exchanged.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_ExternalLeg_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons ExternalLeg hdf5 file and output an array of CObs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">mom</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-        <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
-        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">mom</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">mom</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
-
-    <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">corr_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
-
-    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-        <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-        <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_ExternalLeg_hd5-142"><a href="#read_ExternalLeg_hd5-142"><span class="linenos">142</span></a><span class="k">def</span> <span class="nf">read_ExternalLeg_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="read_ExternalLeg_hd5-143"><a href="#read_ExternalLeg_hd5-143"><span class="linenos">143</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons ExternalLeg hdf5 file and output an array of CObs</span>
+</span><span id="read_ExternalLeg_hd5-144"><a href="#read_ExternalLeg_hd5-144"><span class="linenos">144</span></a>
+</span><span id="read_ExternalLeg_hd5-145"><a href="#read_ExternalLeg_hd5-145"><span class="linenos">145</span></a><span class="sd">    Parameters</span>
+</span><span id="read_ExternalLeg_hd5-146"><a href="#read_ExternalLeg_hd5-146"><span class="linenos">146</span></a><span class="sd">    ----------</span>
+</span><span id="read_ExternalLeg_hd5-147"><a href="#read_ExternalLeg_hd5-147"><span class="linenos">147</span></a><span class="sd">    path : str</span>
+</span><span id="read_ExternalLeg_hd5-148"><a href="#read_ExternalLeg_hd5-148"><span class="linenos">148</span></a><span class="sd">        path to the files to read</span>
+</span><span id="read_ExternalLeg_hd5-149"><a href="#read_ExternalLeg_hd5-149"><span class="linenos">149</span></a><span class="sd">    filestem : str</span>
+</span><span id="read_ExternalLeg_hd5-150"><a href="#read_ExternalLeg_hd5-150"><span class="linenos">150</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="read_ExternalLeg_hd5-151"><a href="#read_ExternalLeg_hd5-151"><span class="linenos">151</span></a><span class="sd">    ens_id : str</span>
+</span><span id="read_ExternalLeg_hd5-152"><a href="#read_ExternalLeg_hd5-152"><span class="linenos">152</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="read_ExternalLeg_hd5-153"><a href="#read_ExternalLeg_hd5-153"><span class="linenos">153</span></a><span class="sd">    idl : range</span>
+</span><span id="read_ExternalLeg_hd5-154"><a href="#read_ExternalLeg_hd5-154"><span class="linenos">154</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="read_ExternalLeg_hd5-155"><a href="#read_ExternalLeg_hd5-155"><span class="linenos">155</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_ExternalLeg_hd5-156"><a href="#read_ExternalLeg_hd5-156"><span class="linenos">156</span></a>
+</span><span id="read_ExternalLeg_hd5-157"><a href="#read_ExternalLeg_hd5-157"><span class="linenos">157</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-158"><a href="#read_ExternalLeg_hd5-158"><span class="linenos">158</span></a>
+</span><span id="read_ExternalLeg_hd5-159"><a href="#read_ExternalLeg_hd5-159"><span class="linenos">159</span></a>    <span class="n">mom</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="read_ExternalLeg_hd5-160"><a href="#read_ExternalLeg_hd5-160"><span class="linenos">160</span></a>
+</span><span id="read_ExternalLeg_hd5-161"><a href="#read_ExternalLeg_hd5-161"><span class="linenos">161</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_ExternalLeg_hd5-162"><a href="#read_ExternalLeg_hd5-162"><span class="linenos">162</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="read_ExternalLeg_hd5-163"><a href="#read_ExternalLeg_hd5-163"><span class="linenos">163</span></a>        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-164"><a href="#read_ExternalLeg_hd5-164"><span class="linenos">164</span></a>        <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-165"><a href="#read_ExternalLeg_hd5-165"><span class="linenos">165</span></a>        <span class="n">corr_data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-166"><a href="#read_ExternalLeg_hd5-166"><span class="linenos">166</span></a>        <span class="k">if</span> <span class="n">mom</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_ExternalLeg_hd5-167"><a href="#read_ExternalLeg_hd5-167"><span class="linenos">167</span></a>            <span class="n">mom</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;ExternalLeg/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-168"><a href="#read_ExternalLeg_hd5-168"><span class="linenos">168</span></a>        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="read_ExternalLeg_hd5-169"><a href="#read_ExternalLeg_hd5-169"><span class="linenos">169</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-170"><a href="#read_ExternalLeg_hd5-170"><span class="linenos">170</span></a>
+</span><span id="read_ExternalLeg_hd5-171"><a href="#read_ExternalLeg_hd5-171"><span class="linenos">171</span></a>    <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">corr_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-172"><a href="#read_ExternalLeg_hd5-172"><span class="linenos">172</span></a>
+</span><span id="read_ExternalLeg_hd5-173"><a href="#read_ExternalLeg_hd5-173"><span class="linenos">173</span></a>    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-174"><a href="#read_ExternalLeg_hd5-174"><span class="linenos">174</span></a>    <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="read_ExternalLeg_hd5-175"><a href="#read_ExternalLeg_hd5-175"><span class="linenos">175</span></a>        <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="read_ExternalLeg_hd5-176"><a href="#read_ExternalLeg_hd5-176"><span class="linenos">176</span></a>        <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="read_ExternalLeg_hd5-177"><a href="#read_ExternalLeg_hd5-177"><span class="linenos">177</span></a>        <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
+</span><span id="read_ExternalLeg_hd5-178"><a href="#read_ExternalLeg_hd5-178"><span class="linenos">178</span></a>
+</span><span id="read_ExternalLeg_hd5-179"><a href="#read_ExternalLeg_hd5-179"><span class="linenos">179</span></a>    <span class="k">return</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -897,59 +897,59 @@ If specified only configurations in the given range are read in.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_Bilinear_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons Bilinear hdf5 file and output an array of CObs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
-    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">16</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gamma&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
-                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
-            <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-
-        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-        <span class="n">local_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-
-        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">local_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
-
-        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
-
-        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result_dict</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_Bilinear_hd5-182"><a href="#read_Bilinear_hd5-182"><span class="linenos">182</span></a><span class="k">def</span> <span class="nf">read_Bilinear_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="read_Bilinear_hd5-183"><a href="#read_Bilinear_hd5-183"><span class="linenos">183</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons Bilinear hdf5 file and output an array of CObs</span>
+</span><span id="read_Bilinear_hd5-184"><a href="#read_Bilinear_hd5-184"><span class="linenos">184</span></a>
+</span><span id="read_Bilinear_hd5-185"><a href="#read_Bilinear_hd5-185"><span class="linenos">185</span></a><span class="sd">    Parameters</span>
+</span><span id="read_Bilinear_hd5-186"><a href="#read_Bilinear_hd5-186"><span class="linenos">186</span></a><span class="sd">    ----------</span>
+</span><span id="read_Bilinear_hd5-187"><a href="#read_Bilinear_hd5-187"><span class="linenos">187</span></a><span class="sd">    path : str</span>
+</span><span id="read_Bilinear_hd5-188"><a href="#read_Bilinear_hd5-188"><span class="linenos">188</span></a><span class="sd">        path to the files to read</span>
+</span><span id="read_Bilinear_hd5-189"><a href="#read_Bilinear_hd5-189"><span class="linenos">189</span></a><span class="sd">    filestem : str</span>
+</span><span id="read_Bilinear_hd5-190"><a href="#read_Bilinear_hd5-190"><span class="linenos">190</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="read_Bilinear_hd5-191"><a href="#read_Bilinear_hd5-191"><span class="linenos">191</span></a><span class="sd">    ens_id : str</span>
+</span><span id="read_Bilinear_hd5-192"><a href="#read_Bilinear_hd5-192"><span class="linenos">192</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="read_Bilinear_hd5-193"><a href="#read_Bilinear_hd5-193"><span class="linenos">193</span></a><span class="sd">    idl : range</span>
+</span><span id="read_Bilinear_hd5-194"><a href="#read_Bilinear_hd5-194"><span class="linenos">194</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="read_Bilinear_hd5-195"><a href="#read_Bilinear_hd5-195"><span class="linenos">195</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_Bilinear_hd5-196"><a href="#read_Bilinear_hd5-196"><span class="linenos">196</span></a>
+</span><span id="read_Bilinear_hd5-197"><a href="#read_Bilinear_hd5-197"><span class="linenos">197</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-198"><a href="#read_Bilinear_hd5-198"><span class="linenos">198</span></a>
+</span><span id="read_Bilinear_hd5-199"><a href="#read_Bilinear_hd5-199"><span class="linenos">199</span></a>    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="read_Bilinear_hd5-200"><a href="#read_Bilinear_hd5-200"><span class="linenos">200</span></a>    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="read_Bilinear_hd5-201"><a href="#read_Bilinear_hd5-201"><span class="linenos">201</span></a>
+</span><span id="read_Bilinear_hd5-202"><a href="#read_Bilinear_hd5-202"><span class="linenos">202</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="read_Bilinear_hd5-203"><a href="#read_Bilinear_hd5-203"><span class="linenos">203</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="read_Bilinear_hd5-204"><a href="#read_Bilinear_hd5-204"><span class="linenos">204</span></a>        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-205"><a href="#read_Bilinear_hd5-205"><span class="linenos">205</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">16</span><span class="p">):</span>
+</span><span id="read_Bilinear_hd5-206"><a href="#read_Bilinear_hd5-206"><span class="linenos">206</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gamma&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-207"><a href="#read_Bilinear_hd5-207"><span class="linenos">207</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
+</span><span id="read_Bilinear_hd5-208"><a href="#read_Bilinear_hd5-208"><span class="linenos">208</span></a>                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_Bilinear_hd5-209"><a href="#read_Bilinear_hd5-209"><span class="linenos">209</span></a>            <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-210"><a href="#read_Bilinear_hd5-210"><span class="linenos">210</span></a>            <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-211"><a href="#read_Bilinear_hd5-211"><span class="linenos">211</span></a>            <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_Bilinear_hd5-212"><a href="#read_Bilinear_hd5-212"><span class="linenos">212</span></a>                <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-213"><a href="#read_Bilinear_hd5-213"><span class="linenos">213</span></a>            <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_Bilinear_hd5-214"><a href="#read_Bilinear_hd5-214"><span class="linenos">214</span></a>                <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="s1">&#39;Bilinear/Bilinear_&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-215"><a href="#read_Bilinear_hd5-215"><span class="linenos">215</span></a>
+</span><span id="read_Bilinear_hd5-216"><a href="#read_Bilinear_hd5-216"><span class="linenos">216</span></a>        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="read_Bilinear_hd5-217"><a href="#read_Bilinear_hd5-217"><span class="linenos">217</span></a>
+</span><span id="read_Bilinear_hd5-218"><a href="#read_Bilinear_hd5-218"><span class="linenos">218</span></a>    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="read_Bilinear_hd5-219"><a href="#read_Bilinear_hd5-219"><span class="linenos">219</span></a>
+</span><span id="read_Bilinear_hd5-220"><a href="#read_Bilinear_hd5-220"><span class="linenos">220</span></a>    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="read_Bilinear_hd5-221"><a href="#read_Bilinear_hd5-221"><span class="linenos">221</span></a>        <span class="n">local_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-222"><a href="#read_Bilinear_hd5-222"><span class="linenos">222</span></a>
+</span><span id="read_Bilinear_hd5-223"><a href="#read_Bilinear_hd5-223"><span class="linenos">223</span></a>        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">rollaxis</span><span class="p">(</span><span class="n">local_data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">5</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-224"><a href="#read_Bilinear_hd5-224"><span class="linenos">224</span></a>
+</span><span id="read_Bilinear_hd5-225"><a href="#read_Bilinear_hd5-225"><span class="linenos">225</span></a>        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-226"><a href="#read_Bilinear_hd5-226"><span class="linenos">226</span></a>        <span class="k">for</span> <span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="read_Bilinear_hd5-227"><a href="#read_Bilinear_hd5-227"><span class="linenos">227</span></a>            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="read_Bilinear_hd5-228"><a href="#read_Bilinear_hd5-228"><span class="linenos">228</span></a>            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="read_Bilinear_hd5-229"><a href="#read_Bilinear_hd5-229"><span class="linenos">229</span></a>            <span class="n">matrix</span><span class="p">[</span><span class="n">si</span><span class="p">,</span> <span class="n">sj</span><span class="p">,</span> <span class="n">ci</span><span class="p">,</span> <span class="n">cj</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-230"><a href="#read_Bilinear_hd5-230"><span class="linenos">230</span></a>
+</span><span id="read_Bilinear_hd5-231"><a href="#read_Bilinear_hd5-231"><span class="linenos">231</span></a>        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
+</span><span id="read_Bilinear_hd5-232"><a href="#read_Bilinear_hd5-232"><span class="linenos">232</span></a>
+</span><span id="read_Bilinear_hd5-233"><a href="#read_Bilinear_hd5-233"><span class="linenos">233</span></a>    <span class="k">return</span> <span class="n">result_dict</span>
+</span></pre></div>
 
         </details>
 
@@ -981,86 +981,86 @@ If specified only configurations in the given range are read in.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_Fourquark_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vertices</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;VA&quot;</span><span class="p">,</span> <span class="s2">&quot;AV&quot;</span><span class="p">]):</span>
-    <span class="sd">&quot;&quot;&quot;Read hadrons FourquarkFullyConnected hdf5 file and output an array of CObs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the files to read</span>
-<span class="sd">    filestem : str</span>
-<span class="sd">        namestem of the files to read</span>
-<span class="sd">    ens_id : str</span>
-<span class="sd">        name of the ensemble, required for internal bookkeeping</span>
-<span class="sd">    idl : range</span>
-<span class="sd">        If specified only configurations in the given range are read in.</span>
-<span class="sd">    vertices : list</span>
-<span class="sd">        Vertex functions to be extracted.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
-    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="n">vertex_names</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
-        <span class="n">vertex_names</span> <span class="o">+=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
-
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="n">tree</span> <span class="o">=</span> <span class="s1">&#39;FourQuarkFullyConnected/FourQuarkFullyConnected_&#39;</span>
-
-    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
-        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">32</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaA&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">),</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaB&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">vertex_names</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
-                    <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
-                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                    <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
-
-        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-    <span class="n">intermediate_dict</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
-        <span class="n">lorentz_names</span> <span class="o">=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="n">lorentz_names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="p">[(</span><span class="s1">&#39;SigmaXY&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">),</span>
-                          <span class="p">(</span><span class="s1">&#39;SigmaXT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">),</span>
-                          <span class="p">(</span><span class="s1">&#39;SigmaYZ&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">),</span>
-                          <span class="p">(</span><span class="s1">&#39;SigmaZT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">)]:</span>
-                <span class="n">sign</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">sign</span> <span class="o">=</span> <span class="mi">1</span>
-            <span class="k">if</span> <span class="n">vertex</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="p">:</span>
-                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">+=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
-
-    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
-
-    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-
-        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">moveaxis</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">8</span><span class="p">)</span>
-
-        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
-            <span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
-
-        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">result_dict</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_Fourquark_hd5-236"><a href="#read_Fourquark_hd5-236"><span class="linenos">236</span></a><span class="k">def</span> <span class="nf">read_Fourquark_hd5</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">ens_id</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">vertices</span><span class="o">=</span><span class="p">[</span><span class="s2">&quot;VA&quot;</span><span class="p">,</span> <span class="s2">&quot;AV&quot;</span><span class="p">]):</span>
+</span><span id="read_Fourquark_hd5-237"><a href="#read_Fourquark_hd5-237"><span class="linenos">237</span></a>    <span class="sd">&quot;&quot;&quot;Read hadrons FourquarkFullyConnected hdf5 file and output an array of CObs</span>
+</span><span id="read_Fourquark_hd5-238"><a href="#read_Fourquark_hd5-238"><span class="linenos">238</span></a>
+</span><span id="read_Fourquark_hd5-239"><a href="#read_Fourquark_hd5-239"><span class="linenos">239</span></a><span class="sd">    Parameters</span>
+</span><span id="read_Fourquark_hd5-240"><a href="#read_Fourquark_hd5-240"><span class="linenos">240</span></a><span class="sd">    ----------</span>
+</span><span id="read_Fourquark_hd5-241"><a href="#read_Fourquark_hd5-241"><span class="linenos">241</span></a><span class="sd">    path : str</span>
+</span><span id="read_Fourquark_hd5-242"><a href="#read_Fourquark_hd5-242"><span class="linenos">242</span></a><span class="sd">        path to the files to read</span>
+</span><span id="read_Fourquark_hd5-243"><a href="#read_Fourquark_hd5-243"><span class="linenos">243</span></a><span class="sd">    filestem : str</span>
+</span><span id="read_Fourquark_hd5-244"><a href="#read_Fourquark_hd5-244"><span class="linenos">244</span></a><span class="sd">        namestem of the files to read</span>
+</span><span id="read_Fourquark_hd5-245"><a href="#read_Fourquark_hd5-245"><span class="linenos">245</span></a><span class="sd">    ens_id : str</span>
+</span><span id="read_Fourquark_hd5-246"><a href="#read_Fourquark_hd5-246"><span class="linenos">246</span></a><span class="sd">        name of the ensemble, required for internal bookkeeping</span>
+</span><span id="read_Fourquark_hd5-247"><a href="#read_Fourquark_hd5-247"><span class="linenos">247</span></a><span class="sd">    idl : range</span>
+</span><span id="read_Fourquark_hd5-248"><a href="#read_Fourquark_hd5-248"><span class="linenos">248</span></a><span class="sd">        If specified only configurations in the given range are read in.</span>
+</span><span id="read_Fourquark_hd5-249"><a href="#read_Fourquark_hd5-249"><span class="linenos">249</span></a><span class="sd">    vertices : list</span>
+</span><span id="read_Fourquark_hd5-250"><a href="#read_Fourquark_hd5-250"><span class="linenos">250</span></a><span class="sd">        Vertex functions to be extracted.</span>
+</span><span id="read_Fourquark_hd5-251"><a href="#read_Fourquark_hd5-251"><span class="linenos">251</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_Fourquark_hd5-252"><a href="#read_Fourquark_hd5-252"><span class="linenos">252</span></a>
+</span><span id="read_Fourquark_hd5-253"><a href="#read_Fourquark_hd5-253"><span class="linenos">253</span></a>    <span class="n">files</span><span class="p">,</span> <span class="n">idx</span> <span class="o">=</span> <span class="n">_get_files</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">filestem</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-254"><a href="#read_Fourquark_hd5-254"><span class="linenos">254</span></a>
+</span><span id="read_Fourquark_hd5-255"><a href="#read_Fourquark_hd5-255"><span class="linenos">255</span></a>    <span class="n">mom_in</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="read_Fourquark_hd5-256"><a href="#read_Fourquark_hd5-256"><span class="linenos">256</span></a>    <span class="n">mom_out</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="read_Fourquark_hd5-257"><a href="#read_Fourquark_hd5-257"><span class="linenos">257</span></a>
+</span><span id="read_Fourquark_hd5-258"><a href="#read_Fourquark_hd5-258"><span class="linenos">258</span></a>    <span class="n">vertex_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_Fourquark_hd5-259"><a href="#read_Fourquark_hd5-259"><span class="linenos">259</span></a>    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-260"><a href="#read_Fourquark_hd5-260"><span class="linenos">260</span></a>        <span class="n">vertex_names</span> <span class="o">+=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-261"><a href="#read_Fourquark_hd5-261"><span class="linenos">261</span></a>
+</span><span id="read_Fourquark_hd5-262"><a href="#read_Fourquark_hd5-262"><span class="linenos">262</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="read_Fourquark_hd5-263"><a href="#read_Fourquark_hd5-263"><span class="linenos">263</span></a>
+</span><span id="read_Fourquark_hd5-264"><a href="#read_Fourquark_hd5-264"><span class="linenos">264</span></a>    <span class="n">tree</span> <span class="o">=</span> <span class="s1">&#39;FourQuarkFullyConnected/FourQuarkFullyConnected_&#39;</span>
+</span><span id="read_Fourquark_hd5-265"><a href="#read_Fourquark_hd5-265"><span class="linenos">265</span></a>
+</span><span id="read_Fourquark_hd5-266"><a href="#read_Fourquark_hd5-266"><span class="linenos">266</span></a>    <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-267"><a href="#read_Fourquark_hd5-267"><span class="linenos">267</span></a>        <span class="n">file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-268"><a href="#read_Fourquark_hd5-268"><span class="linenos">268</span></a>
+</span><span id="read_Fourquark_hd5-269"><a href="#read_Fourquark_hd5-269"><span class="linenos">269</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">32</span><span class="p">):</span>
+</span><span id="read_Fourquark_hd5-270"><a href="#read_Fourquark_hd5-270"><span class="linenos">270</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaA&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">),</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;gammaB&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">decode</span><span class="p">(</span><span class="s1">&#39;UTF-8&#39;</span><span class="p">))</span>
+</span><span id="read_Fourquark_hd5-271"><a href="#read_Fourquark_hd5-271"><span class="linenos">271</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">vertex_names</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-272"><a href="#read_Fourquark_hd5-272"><span class="linenos">272</span></a>                <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-273"><a href="#read_Fourquark_hd5-273"><span class="linenos">273</span></a>                    <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_Fourquark_hd5-274"><a href="#read_Fourquark_hd5-274"><span class="linenos">274</span></a>                <span class="n">raw_data</span> <span class="o">=</span> <span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/corr&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s1">&#39;complex&#39;</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-275"><a href="#read_Fourquark_hd5-275"><span class="linenos">275</span></a>                <span class="n">corr_data</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">raw_data</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-276"><a href="#read_Fourquark_hd5-276"><span class="linenos">276</span></a>                <span class="k">if</span> <span class="n">mom_in</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-277"><a href="#read_Fourquark_hd5-277"><span class="linenos">277</span></a>                    <span class="n">mom_in</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pIn&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-278"><a href="#read_Fourquark_hd5-278"><span class="linenos">278</span></a>                <span class="k">if</span> <span class="n">mom_out</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-279"><a href="#read_Fourquark_hd5-279"><span class="linenos">279</span></a>                    <span class="n">mom_out</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/info&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="s1">&#39;pOut&#39;</span><span class="p">])[</span><span class="mi">3</span><span class="p">:</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-280"><a href="#read_Fourquark_hd5-280"><span class="linenos">280</span></a>
+</span><span id="read_Fourquark_hd5-281"><a href="#read_Fourquark_hd5-281"><span class="linenos">281</span></a>        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="read_Fourquark_hd5-282"><a href="#read_Fourquark_hd5-282"><span class="linenos">282</span></a>
+</span><span id="read_Fourquark_hd5-283"><a href="#read_Fourquark_hd5-283"><span class="linenos">283</span></a>    <span class="n">intermediate_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="read_Fourquark_hd5-284"><a href="#read_Fourquark_hd5-284"><span class="linenos">284</span></a>
+</span><span id="read_Fourquark_hd5-285"><a href="#read_Fourquark_hd5-285"><span class="linenos">285</span></a>    <span class="k">for</span> <span class="n">vertex</span> <span class="ow">in</span> <span class="n">vertices</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-286"><a href="#read_Fourquark_hd5-286"><span class="linenos">286</span></a>        <span class="n">lorentz_names</span> <span class="o">=</span> <span class="n">_get_lorentz_names</span><span class="p">(</span><span class="n">vertex</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-287"><a href="#read_Fourquark_hd5-287"><span class="linenos">287</span></a>        <span class="k">for</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="n">lorentz_names</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-288"><a href="#read_Fourquark_hd5-288"><span class="linenos">288</span></a>            <span class="k">if</span> <span class="n">v_name</span> <span class="ow">in</span> <span class="p">[(</span><span class="s1">&#39;SigmaXY&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaZT&#39;</span><span class="p">),</span>
+</span><span id="read_Fourquark_hd5-289"><a href="#read_Fourquark_hd5-289"><span class="linenos">289</span></a>                          <span class="p">(</span><span class="s1">&#39;SigmaXT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaYZ&#39;</span><span class="p">),</span>
+</span><span id="read_Fourquark_hd5-290"><a href="#read_Fourquark_hd5-290"><span class="linenos">290</span></a>                          <span class="p">(</span><span class="s1">&#39;SigmaYZ&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXT&#39;</span><span class="p">),</span>
+</span><span id="read_Fourquark_hd5-291"><a href="#read_Fourquark_hd5-291"><span class="linenos">291</span></a>                          <span class="p">(</span><span class="s1">&#39;SigmaZT&#39;</span><span class="p">,</span> <span class="s1">&#39;SigmaXY&#39;</span><span class="p">)]:</span>
+</span><span id="read_Fourquark_hd5-292"><a href="#read_Fourquark_hd5-292"><span class="linenos">292</span></a>                <span class="n">sign</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+</span><span id="read_Fourquark_hd5-293"><a href="#read_Fourquark_hd5-293"><span class="linenos">293</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-294"><a href="#read_Fourquark_hd5-294"><span class="linenos">294</span></a>                <span class="n">sign</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_Fourquark_hd5-295"><a href="#read_Fourquark_hd5-295"><span class="linenos">295</span></a>            <span class="k">if</span> <span class="n">vertex</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-296"><a href="#read_Fourquark_hd5-296"><span class="linenos">296</span></a>                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
+</span><span id="read_Fourquark_hd5-297"><a href="#read_Fourquark_hd5-297"><span class="linenos">297</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_Fourquark_hd5-298"><a href="#read_Fourquark_hd5-298"><span class="linenos">298</span></a>                <span class="n">intermediate_dict</span><span class="p">[</span><span class="n">vertex</span><span class="p">]</span> <span class="o">+=</span> <span class="n">sign</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">corr_data</span><span class="p">[</span><span class="n">v_name</span><span class="p">])</span>
+</span><span id="read_Fourquark_hd5-299"><a href="#read_Fourquark_hd5-299"><span class="linenos">299</span></a>
+</span><span id="read_Fourquark_hd5-300"><a href="#read_Fourquark_hd5-300"><span class="linenos">300</span></a>    <span class="n">result_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="read_Fourquark_hd5-301"><a href="#read_Fourquark_hd5-301"><span class="linenos">301</span></a>
+</span><span id="read_Fourquark_hd5-302"><a href="#read_Fourquark_hd5-302"><span class="linenos">302</span></a>    <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">intermediate_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="read_Fourquark_hd5-303"><a href="#read_Fourquark_hd5-303"><span class="linenos">303</span></a>
+</span><span id="read_Fourquark_hd5-304"><a href="#read_Fourquark_hd5-304"><span class="linenos">304</span></a>        <span class="n">rolled_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">moveaxis</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">8</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-305"><a href="#read_Fourquark_hd5-305"><span class="linenos">305</span></a>
+</span><span id="read_Fourquark_hd5-306"><a href="#read_Fourquark_hd5-306"><span class="linenos">306</span></a>        <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-307"><a href="#read_Fourquark_hd5-307"><span class="linenos">307</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">rolled_array</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="read_Fourquark_hd5-308"><a href="#read_Fourquark_hd5-308"><span class="linenos">308</span></a>            <span class="n">real</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="read_Fourquark_hd5-309"><a href="#read_Fourquark_hd5-309"><span class="linenos">309</span></a>            <span class="n">imag</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">rolled_array</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span> <span class="p">[</span><span class="n">ens_id</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idx</span><span class="p">])</span>
+</span><span id="read_Fourquark_hd5-310"><a href="#read_Fourquark_hd5-310"><span class="linenos">310</span></a>            <span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-311"><a href="#read_Fourquark_hd5-311"><span class="linenos">311</span></a>
+</span><span id="read_Fourquark_hd5-312"><a href="#read_Fourquark_hd5-312"><span class="linenos">312</span></a>        <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">Npr_matrix</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">mom_in</span><span class="o">=</span><span class="n">mom_in</span><span class="p">,</span> <span class="n">mom_out</span><span class="o">=</span><span class="n">mom_out</span><span class="p">)</span>
+</span><span id="read_Fourquark_hd5-313"><a href="#read_Fourquark_hd5-313"><span class="linenos">313</span></a>
+</span><span id="read_Fourquark_hd5-314"><a href="#read_Fourquark_hd5-314"><span class="linenos">314</span></a>    <span class="k">return</span> <span class="n">result_dict</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input/json.html b/docs/pyerrors/input/json.html
index 1d5dc4a9..6591965a 100644
--- a/docs/pyerrors/input/json.html
+++ b/docs/pyerrors/input/json.html
@@ -3,14 +3,14 @@
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@@ -84,767 +84,767 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">json</span>
-<span class="kn">import</span> <span class="nn">gzip</span>
-<span class="kn">import</span> <span class="nn">getpass</span>
-<span class="kn">import</span> <span class="nn">socket</span>
-<span class="kn">import</span> <span class="nn">datetime</span>
-<span class="kn">import</span> <span class="nn">platform</span>
-<span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">import</span> <span class="nn">gc</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
-<span class="kn">from</span> <span class="nn">..covobs</span> <span class="kn">import</span> <span class="n">Covobs</span>
-<span class="kn">from</span> <span class="nn">..correlators</span> <span class="kn">import</span> <span class="n">Corr</span>
-<span class="kn">from</span> <span class="nn">..misc</span> <span class="kn">import</span> <span class="n">_assert_equal_properties</span>
-<span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">version</span> <span class="k">as</span> <span class="n">pyerrorsversion</span>
-
-
-<span class="k">def</span> <span class="nf">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Generate the string for the export of a list of Obs or structures containing Obs</span>
-<span class="sd">    to a .json(.gz) file</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    ol : list</span>
-<span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
-<span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    description : str</span>
-<span class="sd">        Optional string that describes the contents of the json file.</span>
-<span class="sd">    indent : int</span>
-<span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
-<span class="sd">        saves disk space.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">_default</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
-    <span class="n">my_encoder</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span>
-    <span class="n">_default</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span><span class="p">()</span><span class="o">.</span><span class="n">default</span>
-    <span class="n">my_encoder</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">_default</span>
-
-    <span class="k">class</span> <span class="nc">Deltalist</span><span class="p">:</span>
-        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;cnfg&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">]</span>
-
-        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
-
-        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
-                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, </span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">d</span><span class="p">)</span>
-            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
-            <span class="k">return</span> <span class="n">s</span>
-
-        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
-
-    <span class="k">class</span> <span class="nc">Floatlist</span><span class="p">:</span>
-        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;li&#39;</span><span class="p">]</span>
-
-        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">li</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">li</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[&#39;</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">)):</span>
-                <span class="k">if</span> <span class="n">i</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, &#39;</span>
-                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
-            <span class="k">return</span> <span class="n">s</span>
-
-        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
-        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
-            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-                <span class="n">rd</span> <span class="o">=</span> <span class="p">{}</span>
-                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">r_name</span>
-                <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">r_name</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
-                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
-                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">])):</span>
-                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">]])</span>
-                    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
-                        <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
-                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Deltalist</span><span class="p">(</span><span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rd</span><span class="p">)</span>
-            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">dl</span>
-
-    <span class="k">def</span> <span class="nf">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
-        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">))</span>
-            <span class="n">ncov</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
-                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-                <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
-                    <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
-                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">dl</span>
-
-    <span class="k">def</span> <span class="nf">write_Obs_to_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Obs&#39;</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1&#39;</span>
-        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">]</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
-        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
-        <span class="k">return</span> <span class="n">d</span>
-
-    <span class="k">def</span> <span class="nf">write_List_to_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
-        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;List&#39;</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
-        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
-        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
-        <span class="k">return</span> <span class="n">d</span>
-
-    <span class="k">def</span> <span class="nf">write_Array_to_dict</span><span class="p">(</span><span class="n">oa</span><span class="p">):</span>
-        <span class="n">ol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">oa</span><span class="p">)</span>
-        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Array&#39;</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">oa</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
-        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
-        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
-        <span class="k">return</span> <span class="n">d</span>
-
-    <span class="k">def</span> <span class="nf">_nan_Obs_like</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
-        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">))</span>
-            <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
-            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
-        <span class="n">my_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-        <span class="n">my_obs</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span><span class="p">:</span>
-            <span class="n">my_obs</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">my_obs</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">my_obs</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">is_merged</span>
-        <span class="k">return</span> <span class="n">my_obs</span>
-
-    <span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
-        <span class="n">first_not_none</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
-        <span class="n">dummy_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="n">dummy_array</span><span class="p">[:]</span> <span class="o">=</span> <span class="n">_nan_Obs_like</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">first_not_none</span><span class="p">]</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">dummy_array</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">))</span>
-        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Corr&#39;</span>
-        <span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="s1">&#39;tag&#39;</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">corr_meta_data</span><span class="p">]</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
-        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>  <span class="c1"># tag is now a dictionary, that contains the previous taglist in the key &quot;tag&quot;</span>
-        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
-        <span class="k">if</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;prange&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span>
-        <span class="k">return</span> <span class="n">dat</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-        <span class="n">ol</span> <span class="o">=</span> <span class="p">[</span><span class="n">ol</span><span class="p">]</span>
-
-    <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;pyerrors </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1.0&#39;</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z&#39;</span><span class="p">)</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">&#39;, &#39;</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
-
-    <span class="k">if</span> <span class="n">description</span><span class="p">:</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">io</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Obs_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_List_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Corr_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unkown datatype.&quot;</span><span class="p">)</span>
-
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="k">for</span> <span class="n">chunk</span> <span class="ow">in</span> <span class="n">my_encoder</span><span class="p">(</span><span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">ensure_ascii</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">iterencode</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">jsonstring</span> <span class="o">+=</span> <span class="n">chunk</span>
-
-    <span class="k">del</span> <span class="n">d</span>
-    <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">remove_quotationmarks_split</span><span class="p">(</span><span class="n">split</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Workaround for un-quoting of delta lists, adds 5% of work</span>
-<span class="sd">           but is save, compared to a simple replace that could destroy the structure</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">split</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="s1">&#39;&quot;deltas&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;cov&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;grad&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]:</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="kc">True</span>
-            <span class="k">if</span> <span class="n">deltas</span><span class="p">:</span>
-                <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;&quot;[&#39;</span><span class="p">,</span> <span class="s1">&#39;[&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;]&quot;&#39;</span><span class="p">,</span> <span class="s1">&#39;]&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;]&#39;</span><span class="p">:</span>
-                    <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
-
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks_split</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;nan&#39;</span><span class="p">,</span> <span class="s1">&#39;NaN&#39;</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">jsonstring</span>
-
-
-<span class="k">def</span> <span class="nf">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .json(.gz) file</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    ol : list</span>
-<span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
-<span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the output file.</span>
-<span class="sd">    description : str</span>
-<span class="sd">        Optional string that describes the contents of the json file.</span>
-<span class="sd">    indent : int</span>
-<span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
-<span class="sd">        saves disk space.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="p">,</span> <span class="n">indent</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
-
-    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
-
-        <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
-        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
-    <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-
-
-<span class="k">def</span> <span class="nf">_parse_json_dict</span><span class="p">(</span><span class="n">json_dict</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reconstruct a list of Obs or structures containing Obs from a dict that</span>
-<span class="sd">    was built out of a json string.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-<span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    json_string : str</span>
-<span class="sd">        json string containing the data.</span>
-<span class="sd">    verbose : bool</span>
-<span class="sd">        Print additional information that was written to the file.</span>
-<span class="sd">    full_output : bool</span>
-<span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
-<span class="sd">        If False, only the data is returned.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">if</span> <span class="n">d</span><span class="p">:</span>
-            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
-            <span class="k">for</span> <span class="n">ens</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="n">ens</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]:</span>
-                    <span class="n">rep_name</span> <span class="o">=</span> <span class="n">rep</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span>
-                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">rep_name</span><span class="p">)</span> <span class="o">&gt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">]):</span>
-                        <span class="k">if</span> <span class="n">rep_name</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">])]</span> <span class="o">!=</span> <span class="s2">&quot;|&quot;</span><span class="p">:</span>
-                            <span class="n">tmp_list</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">rep_name</span><span class="p">)</span>
-                            <span class="n">tmp_list</span> <span class="o">=</span> <span class="n">tmp_list</span><span class="p">[:</span><span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">])]</span> <span class="o">+</span> <span class="p">[</span><span class="s2">&quot;|&quot;</span><span class="p">]</span> <span class="o">+</span> <span class="n">tmp_list</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">]):]</span>
-                            <span class="n">rep_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tmp_list</span><span class="p">)</span>
-                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_name</span><span class="p">)</span>
-                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">di</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]])</span>
-                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">di</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]]))</span>
-                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">][</span><span class="n">rep_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">rep</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;is_merged&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">retd</span>
-
-    <span class="k">def</span> <span class="nf">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">ens</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
-            <span class="n">retl</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">ens</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span>
-            <span class="n">layouts</span> <span class="o">=</span> <span class="n">ens</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
-            <span class="n">layout</span> <span class="o">=</span> <span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">ls</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span> <span class="k">for</span> <span class="n">ls</span> <span class="ow">in</span> <span class="n">layouts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">]</span>
-            <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">layout</span><span class="p">)</span>
-            <span class="n">grad</span> <span class="o">=</span> <span class="n">ens</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span>
-            <span class="n">nobs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">grad</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nobs</span><span class="p">):</span>
-                <span class="n">retl</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;cov&#39;</span><span class="p">:</span> <span class="n">cov</span><span class="p">,</span> <span class="s1">&#39;grad&#39;</span><span class="p">:</span> <span class="p">[</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">g</span> <span class="ow">in</span> <span class="n">grad</span><span class="p">]})</span>
-            <span class="n">retd</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">retl</span>
-        <span class="k">return</span> <span class="n">retd</span>
-
-    <span class="k">def</span> <span class="nf">get_Obs_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
-        <span class="n">layouts</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
-        <span class="k">if</span> <span class="n">layouts</span> <span class="o">!=</span> <span class="s1">&#39;1&#39;</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;layout is </span><span class="si">%s</span><span class="s2"> has to be 1 for type Obs.&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">layouts</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-        <span class="n">values</span> <span class="o">=</span> <span class="n">o</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span>
-        <span class="n">od</span> <span class="o">=</span> <span class="n">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="p">{}))</span>
-        <span class="n">cd</span> <span class="o">=</span> <span class="n">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;cdata&#39;</span><span class="p">,</span> <span class="p">{}))</span>
-
-        <span class="k">if</span> <span class="n">od</span><span class="p">:</span>
-            <span class="n">ret</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([[</span><span class="n">ddi</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">values</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">ddi</span> <span class="ow">in</span> <span class="n">di</span><span class="p">]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]],</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">od</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">])</span>
-            <span class="n">ret</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">ret</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[])</span>
-            <span class="n">ret</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">values</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cd</span><span class="p">:</span>
-            <span class="n">co</span> <span class="o">=</span> <span class="n">cd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">ret</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Covobs</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">grad</span><span class="o">=</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">])</span>
-            <span class="n">ret</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">])</span>
-
-        <span class="n">ret</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-        <span class="n">ret</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="p">[</span><span class="kc">None</span><span class="p">])[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">ret</span>
-
-    <span class="k">def</span> <span class="nf">get_List_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
-        <span class="n">layouts</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
-        <span class="n">layout</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">layouts</span><span class="p">)</span>
-        <span class="n">values</span> <span class="o">=</span> <span class="n">o</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span>
-        <span class="n">od</span> <span class="o">=</span> <span class="n">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="p">{}))</span>
-        <span class="n">cd</span> <span class="o">=</span> <span class="n">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;cdata&#39;</span><span class="p">,</span> <span class="p">{}))</span>
-
-        <span class="n">ret</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="n">layout</span> <span class="o">*</span> <span class="p">[</span><span class="kc">None</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">layout</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">od</span><span class="p">:</span>
-                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="nb">list</span><span class="p">(</span><span class="n">di</span><span class="p">[:,</span> <span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]],</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">od</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]))</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[]))</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Created Obs with means= &#39;</span><span class="p">,</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cd</span><span class="p">:</span>
-                <span class="n">co</span> <span class="o">=</span> <span class="n">cd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Covobs</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">grad</span><span class="o">=</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">])</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">])</span>
-
-            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">ret</span>
-
-    <span class="k">def</span> <span class="nf">get_Array_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
-        <span class="n">layouts</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
-        <span class="n">layout</span> <span class="o">=</span> <span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">ls</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span> <span class="k">for</span> <span class="n">ls</span> <span class="ow">in</span> <span class="n">layouts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">]</span>
-        <span class="n">N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">layout</span><span class="p">)</span>
-        <span class="n">values</span> <span class="o">=</span> <span class="n">o</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span>
-        <span class="n">od</span> <span class="o">=</span> <span class="n">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="p">{}))</span>
-        <span class="n">cd</span> <span class="o">=</span> <span class="n">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;cdata&#39;</span><span class="p">,</span> <span class="p">{}))</span>
-
-        <span class="n">ret</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="n">N</span> <span class="o">*</span> <span class="p">[</span><span class="kc">None</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">od</span><span class="p">:</span>
-                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">di</span><span class="p">[:,</span> <span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]],</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">od</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]))</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[]))</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cd</span><span class="p">:</span>
-                <span class="n">co</span> <span class="o">=</span> <span class="n">cd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Covobs</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">grad</span><span class="o">=</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">])</span>
-                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">])</span>
-            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">ret</span><span class="p">,</span> <span class="n">layout</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">get_Corr_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">),</span> <span class="nb">list</span><span class="p">):</span>  <span class="c1"># supports the old way</span>
-            <span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">)</span>  <span class="c1"># This had to be modified to get the taglist from the dictionary</span>
-            <span class="n">temp_prange</span> <span class="o">=</span> <span class="kc">None</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">),</span> <span class="nb">dict</span><span class="p">):</span>
-            <span class="n">tagdic</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">)</span>
-            <span class="n">taglist</span> <span class="o">=</span> <span class="n">tagdic</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
-            <span class="k">if</span> <span class="s1">&#39;prange&#39;</span> <span class="ow">in</span> <span class="n">tagdic</span><span class="p">:</span>
-                <span class="n">temp_prange</span> <span class="o">=</span> <span class="n">tagdic</span><span class="p">[</span><span class="s1">&#39;prange&#39;</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">temp_prange</span> <span class="o">=</span> <span class="kc">None</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;The tag is not a list or dict&quot;</span><span class="p">)</span>
-
-        <span class="n">corr_tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-        <span class="n">tmp_o</span> <span class="o">=</span> <span class="n">o</span>
-        <span class="n">tmp_o</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">del</span> <span class="n">tmp_o</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
-        <span class="n">dat</span> <span class="o">=</span> <span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">)</span>
-        <span class="n">my_corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">([</span><span class="kc">None</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="k">else</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">dat</span><span class="p">)])</span>
-        <span class="k">if</span> <span class="n">corr_tag</span> <span class="o">!=</span> <span class="s1">&#39;None&#39;</span><span class="p">:</span>
-            <span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">corr_tag</span>
-
-        <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">temp_prange</span>
-        <span class="k">return</span> <span class="n">my_corr</span>
-
-    <span class="n">prog</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;program&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
-    <span class="n">version</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;version&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
-    <span class="n">who</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;who&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
-    <span class="n">date</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
-    <span class="n">host</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;host&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">prog</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Data has been written using </span><span class="si">%s</span><span class="s1">.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">prog</span><span class="p">))</span>
-    <span class="k">if</span> <span class="n">version</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Format version </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">version</span><span class="p">))</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">who</span><span class="p">,</span> <span class="n">date</span><span class="p">,</span> <span class="n">host</span><span class="p">]</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Written by </span><span class="si">%s</span><span class="s1"> on </span><span class="si">%s</span><span class="s1"> on host </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">who</span><span class="p">,</span> <span class="n">date</span><span class="p">,</span> <span class="n">host</span><span class="p">))</span>
-    <span class="n">description</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;description&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">description</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">()</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Description: &#39;</span><span class="p">,</span> <span class="n">description</span><span class="p">)</span>
-    <span class="n">obsdata</span> <span class="o">=</span> <span class="n">json_dict</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span>
-    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">io</span> <span class="ow">in</span> <span class="n">obsdata</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Obs&#39;</span><span class="p">:</span>
-            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_Obs_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;List&#39;</span><span class="p">:</span>
-            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_List_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Array&#39;</span><span class="p">:</span>
-            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Corr&#39;</span><span class="p">:</span>
-            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_Corr_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unkown datatype.&quot;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
-        <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">prog</span>
-        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">version</span>
-        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">who</span>
-        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">date</span>
-        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">host</span>
-        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
-        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span>
-
-        <span class="k">return</span> <span class="n">retd</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsdata</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">ol</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-        <span class="k">return</span> <span class="n">ol</span>
-
-
-<span class="k">def</span> <span class="nf">import_json_string</span><span class="p">(</span><span class="n">json_string</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reconstruct a list of Obs or structures containing Obs from a json string.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-<span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    json_string : str</span>
-<span class="sd">        json string containing the data.</span>
-<span class="sd">    verbose : bool</span>
-<span class="sd">        Print additional information that was written to the file.</span>
-<span class="sd">    full_output : bool</span>
-<span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
-<span class="sd">        If False, only the data is returned.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-<span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the input file.</span>
-<span class="sd">    verbose : bool</span>
-<span class="sd">        Print additional information that was written to the file.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
-<span class="sd">    full_output : bool</span>
-<span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
-<span class="sd">        If False, only the data is returned.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
-    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
-        <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
-            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
-            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
-
-    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_ol_from_dict</span><span class="p">(</span><span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Convert a dictionary of Obs objects to a list and a dictionary that contains</span>
-<span class="sd">    placeholders instead of the Obs objects.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    ind : dict</span>
-<span class="sd">        Dict of JSON valid structures and objects that will be exported.</span>
-<span class="sd">        At the moment, these object can be either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    reps : str</span>
-<span class="sd">        Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">obstypes</span> <span class="o">=</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">Corr</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Placeholder string has to be alphanumeric!&#39;</span><span class="p">)</span>
-    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
-
-    <span class="k">def</span> <span class="nf">dict_replace_obs</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="k">nonlocal</span> <span class="n">ol</span>
-        <span class="k">nonlocal</span> <span class="n">counter</span>
-        <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
-                <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">v</span><span class="p">]):</span>
-                <span class="n">v</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-                <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
-                <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
-                <span class="n">v</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
-                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-                <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
-            <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
-        <span class="k">return</span> <span class="n">x</span>
-
-    <span class="k">def</span> <span class="nf">list_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
-        <span class="k">nonlocal</span> <span class="n">ol</span>
-        <span class="k">nonlocal</span> <span class="n">counter</span>
-        <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-                <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">e</span><span class="p">]):</span>
-                <span class="n">e</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
-                <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
-                <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-                <span class="n">e</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
-                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-                <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
-            <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">x</span>
-
-    <span class="k">def</span> <span class="nf">obslist_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
-        <span class="k">nonlocal</span> <span class="n">ol</span>
-        <span class="k">nonlocal</span> <span class="n">counter</span>
-        <span class="n">il</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
-            <span class="n">il</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-
-        <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">il</span><span class="p">)</span>
-        <span class="n">x</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
-        <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
-        <span class="k">return</span> <span class="n">x</span>
-
-    <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">ol</span><span class="p">,</span> <span class="n">nd</span>
-
-
-<span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    od : dict</span>
-<span class="sd">        Dict of JSON valid structures and objects that will be exported.</span>
-<span class="sd">        At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the output file.</span>
-<span class="sd">    description : str</span>
-<span class="sd">        Optional string that describes the contents of the json file.</span>
-<span class="sd">    indent : int</span>
-<span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
-<span class="sd">        saves disk space.</span>
-<span class="sd">    reps : str</span>
-<span class="sd">        Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;od has to be a dictionary. Did you want to use dump_to_json?&#39;</span><span class="p">)</span>
-
-    <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;This JSON file contains a python dictionary that has been parsed to a list of structures. &#39;</span>
-                  <span class="s1">&#39;OBSDICT contains the dictionary, where Obs or other structures have been replaced by &#39;</span>
-                  <span class="s1">&#39;&#39;</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;[0-9]+. The field description contains the additional description of this JSON file. &#39;</span>
-                  <span class="s1">&#39;This file may be parsed to a dict with the pyerrors routine load_json_dict.&#39;</span><span class="p">)</span>
-
-    <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;INFO&#39;</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">&#39;OBSDICT&#39;</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">&#39;description&#39;</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
-    <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
-
-    <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Parse a list of Obs or structures containing Obs and an accompanying</span>
-<span class="sd">    dict, where the structures have been replaced by placeholders to a</span>
-<span class="sd">    dict that contains the structures.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    ol : list</span>
-<span class="sd">        List of objects -</span>
-<span class="sd">        At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    ind : dict</span>
-<span class="sd">        Dict that defines the structure of the resulting dict and contains placeholders</span>
-<span class="sd">    reps : str</span>
-<span class="sd">        Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Placeholder string has to be alphanumeric!&#39;</span><span class="p">)</span>
-
-    <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
-
-    <span class="k">def</span> <span class="nf">dict_replace_string</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="k">nonlocal</span> <span class="n">counter</span>
-        <span class="k">nonlocal</span> <span class="n">ol</span>
-        <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
-                <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-                <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
-                <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
-                <span class="n">v</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
-                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
-        <span class="k">return</span> <span class="n">x</span>
-
-    <span class="k">def</span> <span class="nf">list_replace_string</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
-        <span class="k">nonlocal</span> <span class="n">counter</span>
-        <span class="k">nonlocal</span> <span class="n">ol</span>
-        <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-                <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
-                <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
-                <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">e</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
-                <span class="n">e</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
-                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
-            <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">x</span>
-
-    <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">counter</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No placeholder has been replaced! Check if reps is set correctly.&#39;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">nd</span>
-
-
-<span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the input file.</span>
-<span class="sd">    verbose : bool</span>
-<span class="sd">        Print additional information that was written to the file.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
-<span class="sd">    full_output : bool</span>
-<span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
-<span class="sd">        If False, only the data is returned.</span>
-<span class="sd">    reps : str</span>
-<span class="sd">        Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;description&#39;</span><span class="p">]</span>
-    <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span>
-    <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span>
-    <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
-        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
-        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
-        <span class="k">return</span> <span class="n">indata</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">od</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">json</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">gzip</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">import</span> <span class="nn">getpass</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="kn">import</span> <span class="nn">socket</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="kn">import</span> <span class="nn">datetime</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="kn">import</span> <span class="nn">platform</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="kn">import</span> <span class="nn">warnings</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a><span class="kn">import</span> <span class="nn">re</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="kn">import</span> <span class="nn">gc</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="kn">from</span> <span class="nn">..covobs</span> <span class="kn">import</span> <span class="n">Covobs</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="kn">from</span> <span class="nn">..correlators</span> <span class="kn">import</span> <span class="n">Corr</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="kn">from</span> <span class="nn">..misc</span> <span class="kn">import</span> <span class="n">_assert_equal_properties</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="kn">from</span> <span class="nn">..</span> <span class="kn">import</span> <span class="n">version</span> <span class="k">as</span> <span class="n">pyerrorsversion</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="k">def</span> <span class="nf">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a>    <span class="sd">&quot;&quot;&quot;Generate the string for the export of a list of Obs or structures containing Obs</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd">    to a .json(.gz) file</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd">    Parameters</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="sd">    ----------</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="sd">    ol : list</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a><span class="sd">    description : str</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="sd">        Optional string that describes the contents of the json file.</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a><span class="sd">    indent : int</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a><span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a><span class="sd">        saves disk space.</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>    <span class="k">def</span> <span class="nf">_default</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>        <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>    <span class="n">my_encoder</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>    <span class="n">_default</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span><span class="p">()</span><span class="o">.</span><span class="n">default</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>    <span class="n">my_encoder</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">_default</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>    <span class="k">class</span> <span class="nc">Deltalist</span><span class="p">:</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a>        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;cnfg&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">]</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span><span class="p">)</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>            <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, </span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">d</span><span class="p">)</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>            <span class="k">return</span> <span class="n">s</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>    <span class="k">class</span> <span class="nc">Floatlist</span><span class="p">:</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;li&#39;</span><span class="p">]</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">li</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">li</span><span class="p">)</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a>            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[&#39;</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">)):</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>                <span class="k">if</span> <span class="n">i</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>                    <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, &#39;</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a>            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a>            <span class="k">return</span> <span class="n">s</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a>        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>    <span class="k">def</span> <span class="nf">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>                <span class="n">rd</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">r_name</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a>                <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">r_name</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">])):</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">]])</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>                    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>                        <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Deltalist</span><span class="p">(</span><span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rd</span><span class="p">)</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>        <span class="k">return</span> <span class="n">dl</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>    <span class="k">def</span> <span class="nf">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">))</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>            <span class="n">ncov</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a>                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>                <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>                    <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>        <span class="k">return</span> <span class="n">dl</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>    <span class="k">def</span> <span class="nf">write_Obs_to_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a>        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Obs&#39;</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1&#39;</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">:</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">]</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a>        <span class="k">return</span> <span class="n">d</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a>    <span class="k">def</span> <span class="nf">write_List_to_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a>        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a>        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;List&#39;</span>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a>        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a>        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a>        <span class="k">return</span> <span class="n">d</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a>    <span class="k">def</span> <span class="nf">write_Array_to_dict</span><span class="p">(</span><span class="n">oa</span><span class="p">):</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a>        <span class="n">ol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">oa</span><span class="p">)</span>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a>        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a>        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Array&#39;</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">oa</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a>        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a>        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a>        <span class="k">return</span> <span class="n">d</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a>    <span class="k">def</span> <span class="nf">_nan_Obs_like</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a>        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a>        <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a>        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">))</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a>            <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a>            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>        <span class="n">my_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>        <span class="n">my_obs</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span><span class="p">:</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a>            <span class="n">my_obs</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a>        <span class="n">my_obs</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>        <span class="n">my_obs</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">is_merged</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a>        <span class="k">return</span> <span class="n">my_obs</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a>    <span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a>        <span class="n">first_not_none</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a>        <span class="n">dummy_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>        <span class="n">dummy_array</span><span class="p">[:]</span> <span class="o">=</span> <span class="n">_nan_Obs_like</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">first_not_none</span><span class="p">]</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a>        <span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">dummy_array</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a>        <span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">))</span>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a>        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Corr&#39;</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a>        <span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a>        <span class="k">if</span> <span class="s1">&#39;tag&#39;</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a>            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a>            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">corr_meta_data</span><span class="p">]</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a>        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>  <span class="c1"># tag is now a dictionary, that contains the previous taglist in the key &quot;tag&quot;</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a>        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a>        <span class="k">if</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a>            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;prange&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a>        <span class="k">return</span> <span class="n">dat</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a>        <span class="n">ol</span> <span class="o">=</span> <span class="p">[</span><span class="n">ol</span><span class="p">]</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a>    <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;pyerrors </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1.0&#39;</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z&#39;</span><span class="p">)</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">&#39;, &#39;</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a>    <span class="k">if</span> <span class="n">description</span><span class="p">:</span>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>    <span class="k">for</span> <span class="n">io</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Obs_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_List_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Corr_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unkown datatype.&quot;</span><span class="p">)</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>    <span class="k">for</span> <span class="n">chunk</span> <span class="ow">in</span> <span class="n">my_encoder</span><span class="p">(</span><span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">ensure_ascii</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">iterencode</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a>        <span class="n">jsonstring</span> <span class="o">+=</span> <span class="n">chunk</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>    <span class="k">del</span> <span class="n">d</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a>    <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a>    <span class="k">def</span> <span class="nf">remove_quotationmarks_split</span><span class="p">(</span><span class="n">split</span><span class="p">):</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a>        <span class="sd">&quot;&quot;&quot;Workaround for un-quoting of delta lists, adds 5% of work</span>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a><span class="sd">           but is save, compared to a simple replace that could destroy the structure</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a>        <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">split</span><span class="p">)):</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a>            <span class="k">if</span> <span class="s1">&#39;&quot;deltas&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;cov&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;grad&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]:</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a>            <span class="k">if</span> <span class="n">deltas</span><span class="p">:</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a>                <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;&quot;[&#39;</span><span class="p">,</span> <span class="s1">&#39;[&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;]&quot;&#39;</span><span class="p">,</span> <span class="s1">&#39;]&#39;</span><span class="p">)</span>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a>                <span class="k">if</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;]&#39;</span><span class="p">:</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a>                    <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a>        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks_split</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;nan&#39;</span><span class="p">,</span> <span class="s1">&#39;NaN&#39;</span><span class="p">)</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a>    <span class="k">return</span> <span class="n">jsonstring</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a><span class="k">def</span> <span class="nf">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a>    <span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .json(.gz) file</span>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a><span class="sd">    Parameters</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a><span class="sd">    ----------</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a><span class="sd">    ol : list</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a><span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a><span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a><span class="sd">    fname : str</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a><span class="sd">        Filename of the output file.</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a><span class="sd">    description : str</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a><span class="sd">        Optional string that describes the contents of the json file.</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a><span class="sd">    indent : int</span>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a><span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a><span class="sd">        saves disk space.</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a><span class="sd">    gz : bool</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a><span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="p">,</span> <span class="n">indent</span><span class="p">)</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a>        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a>    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
+</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a>            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
+</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a>
+</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a>        <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
+</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a>        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
+</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a>        <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a>        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a>    <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>
+</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a>
+</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a><span class="k">def</span> <span class="nf">_parse_json_dict</span><span class="p">(</span><span class="n">json_dict</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a>    <span class="sd">&quot;&quot;&quot;Reconstruct a list of Obs or structures containing Obs from a dict that</span>
+</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a><span class="sd">    was built out of a json string.</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a>
+</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a><span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a>
+</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a><span class="sd">    Parameters</span>
+</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a><span class="sd">    ----------</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a><span class="sd">    json_string : str</span>
+</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a><span class="sd">        json string containing the data.</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a><span class="sd">    verbose : bool</span>
+</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a><span class="sd">        Print additional information that was written to the file.</span>
+</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a><span class="sd">    full_output : bool</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a><span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a><span class="sd">        If False, only the data is returned.</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a>
+</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a>    <span class="k">def</span> <span class="nf">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a>        <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a>        <span class="k">if</span> <span class="n">d</span><span class="p">:</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a>            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a>            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a>            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a>            <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a>            <span class="k">for</span> <span class="n">ens</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
+</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a>                <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="n">ens</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]:</span>
+</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a>                    <span class="n">rep_name</span> <span class="o">=</span> <span class="n">rep</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span>
+</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a>                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">rep_name</span><span class="p">)</span> <span class="o">&gt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">]):</span>
+</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a>                        <span class="k">if</span> <span class="n">rep_name</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">])]</span> <span class="o">!=</span> <span class="s2">&quot;|&quot;</span><span class="p">:</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a>                            <span class="n">tmp_list</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">rep_name</span><span class="p">)</span>
+</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a>                            <span class="n">tmp_list</span> <span class="o">=</span> <span class="n">tmp_list</span><span class="p">[:</span><span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">])]</span> <span class="o">+</span> <span class="p">[</span><span class="s2">&quot;|&quot;</span><span class="p">]</span> <span class="o">+</span> <span class="n">tmp_list</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s2">&quot;id&quot;</span><span class="p">]):]</span>
+</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a>                            <span class="n">rep_name</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tmp_list</span><span class="p">)</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a>                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_name</span><span class="p">)</span>
+</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a>                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">di</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]])</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a>                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">di</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]]))</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a>                    <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">][</span><span class="n">rep_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">rep</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;is_merged&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a>        <span class="k">return</span> <span class="n">retd</span>
+</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a>
+</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a>    <span class="k">def</span> <span class="nf">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a>        <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a>        <span class="k">for</span> <span class="n">ens</span> <span class="ow">in</span> <span class="n">d</span><span class="p">:</span>
+</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a>            <span class="n">retl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="n">ens</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a>            <span class="n">layouts</span> <span class="o">=</span> <span class="n">ens</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a>            <span class="n">layout</span> <span class="o">=</span> <span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">ls</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span> <span class="k">for</span> <span class="n">ls</span> <span class="ow">in</span> <span class="n">layouts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">]</span>
+</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>            <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">ens</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">layout</span><span class="p">)</span>
+</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a>            <span class="n">grad</span> <span class="o">=</span> <span class="n">ens</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a>            <span class="n">nobs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">grad</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nobs</span><span class="p">):</span>
+</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a>                <span class="n">retl</span><span class="o">.</span><span class="n">append</span><span class="p">({</span><span class="s1">&#39;name&#39;</span><span class="p">:</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;cov&#39;</span><span class="p">:</span> <span class="n">cov</span><span class="p">,</span> <span class="s1">&#39;grad&#39;</span><span class="p">:</span> <span class="p">[</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">g</span> <span class="ow">in</span> <span class="n">grad</span><span class="p">]})</span>
+</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a>            <span class="n">retd</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">retl</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a>        <span class="k">return</span> <span class="n">retd</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a>
+</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a>    <span class="k">def</span> <span class="nf">get_Obs_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
+</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a>        <span class="n">layouts</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a>        <span class="k">if</span> <span class="n">layouts</span> <span class="o">!=</span> <span class="s1">&#39;1&#39;</span><span class="p">:</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;layout is </span><span class="si">%s</span><span class="s2"> has to be 1 for type Obs.&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">layouts</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a>
+</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a>        <span class="n">values</span> <span class="o">=</span> <span class="n">o</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a>        <span class="n">od</span> <span class="o">=</span> <span class="n">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="p">{}))</span>
+</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a>        <span class="n">cd</span> <span class="o">=</span> <span class="n">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;cdata&#39;</span><span class="p">,</span> <span class="p">{}))</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a>
+</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a>        <span class="k">if</span> <span class="n">od</span><span class="p">:</span>
+</span><span id="L-357"><a href="#L-357"><span class="linenos">357</span></a>            <span class="n">ret</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([[</span><span class="n">ddi</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">values</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">ddi</span> <span class="ow">in</span> <span class="n">di</span><span class="p">]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]],</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">od</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">])</span>
+</span><span id="L-358"><a href="#L-358"><span class="linenos">358</span></a>            <span class="n">ret</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span>
+</span><span id="L-359"><a href="#L-359"><span class="linenos">359</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-360"><a href="#L-360"><span class="linenos">360</span></a>            <span class="n">ret</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[])</span>
+</span><span id="L-361"><a href="#L-361"><span class="linenos">361</span></a>            <span class="n">ret</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">values</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-362"><a href="#L-362"><span class="linenos">362</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cd</span><span class="p">:</span>
+</span><span id="L-363"><a href="#L-363"><span class="linenos">363</span></a>            <span class="n">co</span> <span class="o">=</span> <span class="n">cd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-364"><a href="#L-364"><span class="linenos">364</span></a>            <span class="n">ret</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Covobs</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">grad</span><span class="o">=</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">])</span>
+</span><span id="L-365"><a href="#L-365"><span class="linenos">365</span></a>            <span class="n">ret</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">])</span>
+</span><span id="L-366"><a href="#L-366"><span class="linenos">366</span></a>
+</span><span id="L-367"><a href="#L-367"><span class="linenos">367</span></a>        <span class="n">ret</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
+</span><span id="L-368"><a href="#L-368"><span class="linenos">368</span></a>        <span class="n">ret</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="p">[</span><span class="kc">None</span><span class="p">])[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-369"><a href="#L-369"><span class="linenos">369</span></a>        <span class="k">return</span> <span class="n">ret</span>
+</span><span id="L-370"><a href="#L-370"><span class="linenos">370</span></a>
+</span><span id="L-371"><a href="#L-371"><span class="linenos">371</span></a>    <span class="k">def</span> <span class="nf">get_List_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
+</span><span id="L-372"><a href="#L-372"><span class="linenos">372</span></a>        <span class="n">layouts</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+</span><span id="L-373"><a href="#L-373"><span class="linenos">373</span></a>        <span class="n">layout</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">layouts</span><span class="p">)</span>
+</span><span id="L-374"><a href="#L-374"><span class="linenos">374</span></a>        <span class="n">values</span> <span class="o">=</span> <span class="n">o</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span>
+</span><span id="L-375"><a href="#L-375"><span class="linenos">375</span></a>        <span class="n">od</span> <span class="o">=</span> <span class="n">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="p">{}))</span>
+</span><span id="L-376"><a href="#L-376"><span class="linenos">376</span></a>        <span class="n">cd</span> <span class="o">=</span> <span class="n">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;cdata&#39;</span><span class="p">,</span> <span class="p">{}))</span>
+</span><span id="L-377"><a href="#L-377"><span class="linenos">377</span></a>
+</span><span id="L-378"><a href="#L-378"><span class="linenos">378</span></a>        <span class="n">ret</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-379"><a href="#L-379"><span class="linenos">379</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="n">layout</span> <span class="o">*</span> <span class="p">[</span><span class="kc">None</span><span class="p">])</span>
+</span><span id="L-380"><a href="#L-380"><span class="linenos">380</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">layout</span><span class="p">):</span>
+</span><span id="L-381"><a href="#L-381"><span class="linenos">381</span></a>            <span class="k">if</span> <span class="n">od</span><span class="p">:</span>
+</span><span id="L-382"><a href="#L-382"><span class="linenos">382</span></a>                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="nb">list</span><span class="p">(</span><span class="n">di</span><span class="p">[:,</span> <span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]],</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">od</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]))</span>
+</span><span id="L-383"><a href="#L-383"><span class="linenos">383</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span>
+</span><span id="L-384"><a href="#L-384"><span class="linenos">384</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-385"><a href="#L-385"><span class="linenos">385</span></a>                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[]))</span>
+</span><span id="L-386"><a href="#L-386"><span class="linenos">386</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-387"><a href="#L-387"><span class="linenos">387</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Created Obs with means= &#39;</span><span class="p">,</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-388"><a href="#L-388"><span class="linenos">388</span></a>            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cd</span><span class="p">:</span>
+</span><span id="L-389"><a href="#L-389"><span class="linenos">389</span></a>                <span class="n">co</span> <span class="o">=</span> <span class="n">cd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-390"><a href="#L-390"><span class="linenos">390</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Covobs</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">grad</span><span class="o">=</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">])</span>
+</span><span id="L-391"><a href="#L-391"><span class="linenos">391</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">])</span>
+</span><span id="L-392"><a href="#L-392"><span class="linenos">392</span></a>
+</span><span id="L-393"><a href="#L-393"><span class="linenos">393</span></a>            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
+</span><span id="L-394"><a href="#L-394"><span class="linenos">394</span></a>            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-395"><a href="#L-395"><span class="linenos">395</span></a>        <span class="k">return</span> <span class="n">ret</span>
+</span><span id="L-396"><a href="#L-396"><span class="linenos">396</span></a>
+</span><span id="L-397"><a href="#L-397"><span class="linenos">397</span></a>    <span class="k">def</span> <span class="nf">get_Array_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
+</span><span id="L-398"><a href="#L-398"><span class="linenos">398</span></a>        <span class="n">layouts</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;layout&#39;</span><span class="p">,</span> <span class="s1">&#39;1&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
+</span><span id="L-399"><a href="#L-399"><span class="linenos">399</span></a>        <span class="n">layout</span> <span class="o">=</span> <span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">ls</span><span class="o">.</span><span class="n">strip</span><span class="p">())</span> <span class="k">for</span> <span class="n">ls</span> <span class="ow">in</span> <span class="n">layouts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">]</span>
+</span><span id="L-400"><a href="#L-400"><span class="linenos">400</span></a>        <span class="n">N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">layout</span><span class="p">)</span>
+</span><span id="L-401"><a href="#L-401"><span class="linenos">401</span></a>        <span class="n">values</span> <span class="o">=</span> <span class="n">o</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span>
+</span><span id="L-402"><a href="#L-402"><span class="linenos">402</span></a>        <span class="n">od</span> <span class="o">=</span> <span class="n">_gen_obsd_from_datad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;data&#39;</span><span class="p">,</span> <span class="p">{}))</span>
+</span><span id="L-403"><a href="#L-403"><span class="linenos">403</span></a>        <span class="n">cd</span> <span class="o">=</span> <span class="n">_gen_covobsd_from_cdatad</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;cdata&#39;</span><span class="p">,</span> <span class="p">{}))</span>
+</span><span id="L-404"><a href="#L-404"><span class="linenos">404</span></a>
+</span><span id="L-405"><a href="#L-405"><span class="linenos">405</span></a>        <span class="n">ret</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-406"><a href="#L-406"><span class="linenos">406</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="n">N</span> <span class="o">*</span> <span class="p">[</span><span class="kc">None</span><span class="p">])</span>
+</span><span id="L-407"><a href="#L-407"><span class="linenos">407</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">N</span><span class="p">):</span>
+</span><span id="L-408"><a href="#L-408"><span class="linenos">408</span></a>            <span class="k">if</span> <span class="n">od</span><span class="p">:</span>
+</span><span id="L-409"><a href="#L-409"><span class="linenos">409</span></a>                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([</span><span class="n">di</span><span class="p">[:,</span> <span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">di</span> <span class="ow">in</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]],</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">od</span><span class="p">[</span><span class="s1">&#39;idl&#39;</span><span class="p">]))</span>
+</span><span id="L-410"><a href="#L-410"><span class="linenos">410</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">od</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span>
+</span><span id="L-411"><a href="#L-411"><span class="linenos">411</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-412"><a href="#L-412"><span class="linenos">412</span></a>                <span class="n">ret</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[]))</span>
+</span><span id="L-413"><a href="#L-413"><span class="linenos">413</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-414"><a href="#L-414"><span class="linenos">414</span></a>            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">cd</span><span class="p">:</span>
+</span><span id="L-415"><a href="#L-415"><span class="linenos">415</span></a>                <span class="n">co</span> <span class="o">=</span> <span class="n">cd</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-416"><a href="#L-416"><span class="linenos">416</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">Covobs</span><span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">],</span> <span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">],</span> <span class="n">grad</span><span class="o">=</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">])</span>
+</span><span id="L-417"><a href="#L-417"><span class="linenos">417</span></a>                <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">])</span>
+</span><span id="L-418"><a href="#L-418"><span class="linenos">418</span></a>            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
+</span><span id="L-419"><a href="#L-419"><span class="linenos">419</span></a>            <span class="n">ret</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-420"><a href="#L-420"><span class="linenos">420</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">ret</span><span class="p">,</span> <span class="n">layout</span><span class="p">)</span>
+</span><span id="L-421"><a href="#L-421"><span class="linenos">421</span></a>
+</span><span id="L-422"><a href="#L-422"><span class="linenos">422</span></a>    <span class="k">def</span> <span class="nf">get_Corr_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
+</span><span id="L-423"><a href="#L-423"><span class="linenos">423</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">),</span> <span class="nb">list</span><span class="p">):</span>  <span class="c1"># supports the old way</span>
+</span><span id="L-424"><a href="#L-424"><span class="linenos">424</span></a>            <span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">)</span>  <span class="c1"># This had to be modified to get the taglist from the dictionary</span>
+</span><span id="L-425"><a href="#L-425"><span class="linenos">425</span></a>            <span class="n">temp_prange</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-426"><a href="#L-426"><span class="linenos">426</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">),</span> <span class="nb">dict</span><span class="p">):</span>
+</span><span id="L-427"><a href="#L-427"><span class="linenos">427</span></a>            <span class="n">tagdic</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;tag&#39;</span><span class="p">)</span>
+</span><span id="L-428"><a href="#L-428"><span class="linenos">428</span></a>            <span class="n">taglist</span> <span class="o">=</span> <span class="n">tagdic</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
+</span><span id="L-429"><a href="#L-429"><span class="linenos">429</span></a>            <span class="k">if</span> <span class="s1">&#39;prange&#39;</span> <span class="ow">in</span> <span class="n">tagdic</span><span class="p">:</span>
+</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a>                <span class="n">temp_prange</span> <span class="o">=</span> <span class="n">tagdic</span><span class="p">[</span><span class="s1">&#39;prange&#39;</span><span class="p">]</span>
+</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-432"><a href="#L-432"><span class="linenos">432</span></a>                <span class="n">temp_prange</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-433"><a href="#L-433"><span class="linenos">433</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-434"><a href="#L-434"><span class="linenos">434</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;The tag is not a list or dict&quot;</span><span class="p">)</span>
+</span><span id="L-435"><a href="#L-435"><span class="linenos">435</span></a>
+</span><span id="L-436"><a href="#L-436"><span class="linenos">436</span></a>        <span class="n">corr_tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-437"><a href="#L-437"><span class="linenos">437</span></a>        <span class="n">tmp_o</span> <span class="o">=</span> <span class="n">o</span>
+</span><span id="L-438"><a href="#L-438"><span class="linenos">438</span></a>        <span class="n">tmp_o</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-439"><a href="#L-439"><span class="linenos">439</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-440"><a href="#L-440"><span class="linenos">440</span></a>            <span class="k">del</span> <span class="n">tmp_o</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
+</span><span id="L-441"><a href="#L-441"><span class="linenos">441</span></a>        <span class="n">dat</span> <span class="o">=</span> <span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">)</span>
+</span><span id="L-442"><a href="#L-442"><span class="linenos">442</span></a>        <span class="n">my_corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">([</span><span class="kc">None</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="k">else</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">dat</span><span class="p">)])</span>
+</span><span id="L-443"><a href="#L-443"><span class="linenos">443</span></a>        <span class="k">if</span> <span class="n">corr_tag</span> <span class="o">!=</span> <span class="s1">&#39;None&#39;</span><span class="p">:</span>
+</span><span id="L-444"><a href="#L-444"><span class="linenos">444</span></a>            <span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">corr_tag</span>
+</span><span id="L-445"><a href="#L-445"><span class="linenos">445</span></a>
+</span><span id="L-446"><a href="#L-446"><span class="linenos">446</span></a>        <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span> <span class="o">=</span> <span class="n">temp_prange</span>
+</span><span id="L-447"><a href="#L-447"><span class="linenos">447</span></a>        <span class="k">return</span> <span class="n">my_corr</span>
+</span><span id="L-448"><a href="#L-448"><span class="linenos">448</span></a>
+</span><span id="L-449"><a href="#L-449"><span class="linenos">449</span></a>    <span class="n">prog</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;program&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-450"><a href="#L-450"><span class="linenos">450</span></a>    <span class="n">version</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;version&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-451"><a href="#L-451"><span class="linenos">451</span></a>    <span class="n">who</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;who&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-452"><a href="#L-452"><span class="linenos">452</span></a>    <span class="n">date</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;date&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-453"><a href="#L-453"><span class="linenos">453</span></a>    <span class="n">host</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;host&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-454"><a href="#L-454"><span class="linenos">454</span></a>    <span class="k">if</span> <span class="n">prog</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
+</span><span id="L-455"><a href="#L-455"><span class="linenos">455</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Data has been written using </span><span class="si">%s</span><span class="s1">.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">prog</span><span class="p">))</span>
+</span><span id="L-456"><a href="#L-456"><span class="linenos">456</span></a>    <span class="k">if</span> <span class="n">version</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
+</span><span id="L-457"><a href="#L-457"><span class="linenos">457</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Format version </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">version</span><span class="p">))</span>
+</span><span id="L-458"><a href="#L-458"><span class="linenos">458</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">who</span><span class="p">,</span> <span class="n">date</span><span class="p">,</span> <span class="n">host</span><span class="p">]</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">):</span>
+</span><span id="L-459"><a href="#L-459"><span class="linenos">459</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Written by </span><span class="si">%s</span><span class="s1"> on </span><span class="si">%s</span><span class="s1"> on host </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">who</span><span class="p">,</span> <span class="n">date</span><span class="p">,</span> <span class="n">host</span><span class="p">))</span>
+</span><span id="L-460"><a href="#L-460"><span class="linenos">460</span></a>    <span class="n">description</span> <span class="o">=</span> <span class="n">json_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;description&#39;</span><span class="p">,</span> <span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-461"><a href="#L-461"><span class="linenos">461</span></a>    <span class="k">if</span> <span class="n">description</span> <span class="ow">and</span> <span class="n">verbose</span><span class="p">:</span>
+</span><span id="L-462"><a href="#L-462"><span class="linenos">462</span></a>        <span class="nb">print</span><span class="p">()</span>
+</span><span id="L-463"><a href="#L-463"><span class="linenos">463</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Description: &#39;</span><span class="p">,</span> <span class="n">description</span><span class="p">)</span>
+</span><span id="L-464"><a href="#L-464"><span class="linenos">464</span></a>    <span class="n">obsdata</span> <span class="o">=</span> <span class="n">json_dict</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span>
+</span><span id="L-465"><a href="#L-465"><span class="linenos">465</span></a>    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-466"><a href="#L-466"><span class="linenos">466</span></a>    <span class="k">for</span> <span class="n">io</span> <span class="ow">in</span> <span class="n">obsdata</span><span class="p">:</span>
+</span><span id="L-467"><a href="#L-467"><span class="linenos">467</span></a>        <span class="k">if</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Obs&#39;</span><span class="p">:</span>
+</span><span id="L-468"><a href="#L-468"><span class="linenos">468</span></a>            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_Obs_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-469"><a href="#L-469"><span class="linenos">469</span></a>        <span class="k">elif</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;List&#39;</span><span class="p">:</span>
+</span><span id="L-470"><a href="#L-470"><span class="linenos">470</span></a>            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_List_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-471"><a href="#L-471"><span class="linenos">471</span></a>        <span class="k">elif</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Array&#39;</span><span class="p">:</span>
+</span><span id="L-472"><a href="#L-472"><span class="linenos">472</span></a>            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-473"><a href="#L-473"><span class="linenos">473</span></a>        <span class="k">elif</span> <span class="n">io</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;Corr&#39;</span><span class="p">:</span>
+</span><span id="L-474"><a href="#L-474"><span class="linenos">474</span></a>            <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">get_Corr_from_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="L-475"><a href="#L-475"><span class="linenos">475</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-476"><a href="#L-476"><span class="linenos">476</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unkown datatype.&quot;</span><span class="p">)</span>
+</span><span id="L-477"><a href="#L-477"><span class="linenos">477</span></a>
+</span><span id="L-478"><a href="#L-478"><span class="linenos">478</span></a>    <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
+</span><span id="L-479"><a href="#L-479"><span class="linenos">479</span></a>        <span class="n">retd</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-480"><a href="#L-480"><span class="linenos">480</span></a>        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">prog</span>
+</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a>        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">version</span>
+</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a>        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">who</span>
+</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a>        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">date</span>
+</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a>        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">host</span>
+</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a>        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
+</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a>        <span class="n">retd</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span>
+</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a>
+</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a>        <span class="k">return</span> <span class="n">retd</span>
+</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obsdata</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a>            <span class="n">ol</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a>
+</span><span id="L-493"><a href="#L-493"><span class="linenos">493</span></a>        <span class="k">return</span> <span class="n">ol</span>
+</span><span id="L-494"><a href="#L-494"><span class="linenos">494</span></a>
+</span><span id="L-495"><a href="#L-495"><span class="linenos">495</span></a>
+</span><span id="L-496"><a href="#L-496"><span class="linenos">496</span></a><span class="k">def</span> <span class="nf">import_json_string</span><span class="p">(</span><span class="n">json_string</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-497"><a href="#L-497"><span class="linenos">497</span></a>    <span class="sd">&quot;&quot;&quot;Reconstruct a list of Obs or structures containing Obs from a json string.</span>
+</span><span id="L-498"><a href="#L-498"><span class="linenos">498</span></a>
+</span><span id="L-499"><a href="#L-499"><span class="linenos">499</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="L-500"><a href="#L-500"><span class="linenos">500</span></a><span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
+</span><span id="L-501"><a href="#L-501"><span class="linenos">501</span></a>
+</span><span id="L-502"><a href="#L-502"><span class="linenos">502</span></a><span class="sd">    Parameters</span>
+</span><span id="L-503"><a href="#L-503"><span class="linenos">503</span></a><span class="sd">    ----------</span>
+</span><span id="L-504"><a href="#L-504"><span class="linenos">504</span></a><span class="sd">    json_string : str</span>
+</span><span id="L-505"><a href="#L-505"><span class="linenos">505</span></a><span class="sd">        json string containing the data.</span>
+</span><span id="L-506"><a href="#L-506"><span class="linenos">506</span></a><span class="sd">    verbose : bool</span>
+</span><span id="L-507"><a href="#L-507"><span class="linenos">507</span></a><span class="sd">        Print additional information that was written to the file.</span>
+</span><span id="L-508"><a href="#L-508"><span class="linenos">508</span></a><span class="sd">    full_output : bool</span>
+</span><span id="L-509"><a href="#L-509"><span class="linenos">509</span></a><span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
+</span><span id="L-510"><a href="#L-510"><span class="linenos">510</span></a><span class="sd">        If False, only the data is returned.</span>
+</span><span id="L-511"><a href="#L-511"><span class="linenos">511</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-512"><a href="#L-512"><span class="linenos">512</span></a>
+</span><span id="L-513"><a href="#L-513"><span class="linenos">513</span></a>    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
+</span><span id="L-514"><a href="#L-514"><span class="linenos">514</span></a>
+</span><span id="L-515"><a href="#L-515"><span class="linenos">515</span></a>
+</span><span id="L-516"><a href="#L-516"><span class="linenos">516</span></a><span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-517"><a href="#L-517"><span class="linenos">517</span></a>    <span class="sd">&quot;&quot;&quot;Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
+</span><span id="L-518"><a href="#L-518"><span class="linenos">518</span></a>
+</span><span id="L-519"><a href="#L-519"><span class="linenos">519</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="L-520"><a href="#L-520"><span class="linenos">520</span></a><span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
+</span><span id="L-521"><a href="#L-521"><span class="linenos">521</span></a>
+</span><span id="L-522"><a href="#L-522"><span class="linenos">522</span></a><span class="sd">    Parameters</span>
+</span><span id="L-523"><a href="#L-523"><span class="linenos">523</span></a><span class="sd">    ----------</span>
+</span><span id="L-524"><a href="#L-524"><span class="linenos">524</span></a><span class="sd">    fname : str</span>
+</span><span id="L-525"><a href="#L-525"><span class="linenos">525</span></a><span class="sd">        Filename of the input file.</span>
+</span><span id="L-526"><a href="#L-526"><span class="linenos">526</span></a><span class="sd">    verbose : bool</span>
+</span><span id="L-527"><a href="#L-527"><span class="linenos">527</span></a><span class="sd">        Print additional information that was written to the file.</span>
+</span><span id="L-528"><a href="#L-528"><span class="linenos">528</span></a><span class="sd">    gz : bool</span>
+</span><span id="L-529"><a href="#L-529"><span class="linenos">529</span></a><span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
+</span><span id="L-530"><a href="#L-530"><span class="linenos">530</span></a><span class="sd">    full_output : bool</span>
+</span><span id="L-531"><a href="#L-531"><span class="linenos">531</span></a><span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
+</span><span id="L-532"><a href="#L-532"><span class="linenos">532</span></a><span class="sd">        If False, only the data is returned.</span>
+</span><span id="L-533"><a href="#L-533"><span class="linenos">533</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-534"><a href="#L-534"><span class="linenos">534</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="L-535"><a href="#L-535"><span class="linenos">535</span></a>        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
+</span><span id="L-536"><a href="#L-536"><span class="linenos">536</span></a>    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
+</span><span id="L-537"><a href="#L-537"><span class="linenos">537</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="L-538"><a href="#L-538"><span class="linenos">538</span></a>            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
+</span><span id="L-539"><a href="#L-539"><span class="linenos">539</span></a>        <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
+</span><span id="L-540"><a href="#L-540"><span class="linenos">540</span></a>            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
+</span><span id="L-541"><a href="#L-541"><span class="linenos">541</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-542"><a href="#L-542"><span class="linenos">542</span></a>        <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="L-543"><a href="#L-543"><span class="linenos">543</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
+</span><span id="L-544"><a href="#L-544"><span class="linenos">544</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
+</span><span id="L-545"><a href="#L-545"><span class="linenos">545</span></a>            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
+</span><span id="L-546"><a href="#L-546"><span class="linenos">546</span></a>
+</span><span id="L-547"><a href="#L-547"><span class="linenos">547</span></a>    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
+</span><span id="L-548"><a href="#L-548"><span class="linenos">548</span></a>
+</span><span id="L-549"><a href="#L-549"><span class="linenos">549</span></a>
+</span><span id="L-550"><a href="#L-550"><span class="linenos">550</span></a><span class="k">def</span> <span class="nf">_ol_from_dict</span><span class="p">(</span><span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
+</span><span id="L-551"><a href="#L-551"><span class="linenos">551</span></a>    <span class="sd">&quot;&quot;&quot;Convert a dictionary of Obs objects to a list and a dictionary that contains</span>
+</span><span id="L-552"><a href="#L-552"><span class="linenos">552</span></a><span class="sd">    placeholders instead of the Obs objects.</span>
+</span><span id="L-553"><a href="#L-553"><span class="linenos">553</span></a>
+</span><span id="L-554"><a href="#L-554"><span class="linenos">554</span></a><span class="sd">    Parameters</span>
+</span><span id="L-555"><a href="#L-555"><span class="linenos">555</span></a><span class="sd">    ----------</span>
+</span><span id="L-556"><a href="#L-556"><span class="linenos">556</span></a><span class="sd">    ind : dict</span>
+</span><span id="L-557"><a href="#L-557"><span class="linenos">557</span></a><span class="sd">        Dict of JSON valid structures and objects that will be exported.</span>
+</span><span id="L-558"><a href="#L-558"><span class="linenos">558</span></a><span class="sd">        At the moment, these object can be either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="L-559"><a href="#L-559"><span class="linenos">559</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="L-560"><a href="#L-560"><span class="linenos">560</span></a><span class="sd">    reps : str</span>
+</span><span id="L-561"><a href="#L-561"><span class="linenos">561</span></a><span class="sd">        Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
+</span><span id="L-562"><a href="#L-562"><span class="linenos">562</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-563"><a href="#L-563"><span class="linenos">563</span></a>
+</span><span id="L-564"><a href="#L-564"><span class="linenos">564</span></a>    <span class="n">obstypes</span> <span class="o">=</span> <span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">Corr</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)</span>
+</span><span id="L-565"><a href="#L-565"><span class="linenos">565</span></a>
+</span><span id="L-566"><a href="#L-566"><span class="linenos">566</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
+</span><span id="L-567"><a href="#L-567"><span class="linenos">567</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Placeholder string has to be alphanumeric!&#39;</span><span class="p">)</span>
+</span><span id="L-568"><a href="#L-568"><span class="linenos">568</span></a>    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-569"><a href="#L-569"><span class="linenos">569</span></a>    <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-570"><a href="#L-570"><span class="linenos">570</span></a>
+</span><span id="L-571"><a href="#L-571"><span class="linenos">571</span></a>    <span class="k">def</span> <span class="nf">dict_replace_obs</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-572"><a href="#L-572"><span class="linenos">572</span></a>        <span class="k">nonlocal</span> <span class="n">ol</span>
+</span><span id="L-573"><a href="#L-573"><span class="linenos">573</span></a>        <span class="k">nonlocal</span> <span class="n">counter</span>
+</span><span id="L-574"><a href="#L-574"><span class="linenos">574</span></a>        <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-575"><a href="#L-575"><span class="linenos">575</span></a>        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="L-576"><a href="#L-576"><span class="linenos">576</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+</span><span id="L-577"><a href="#L-577"><span class="linenos">577</span></a>                <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
+</span><span id="L-578"><a href="#L-578"><span class="linenos">578</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">v</span><span class="p">]):</span>
+</span><span id="L-579"><a href="#L-579"><span class="linenos">579</span></a>                <span class="n">v</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
+</span><span id="L-580"><a href="#L-580"><span class="linenos">580</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-581"><a href="#L-581"><span class="linenos">581</span></a>                <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
+</span><span id="L-582"><a href="#L-582"><span class="linenos">582</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
+</span><span id="L-583"><a href="#L-583"><span class="linenos">583</span></a>                <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
+</span><span id="L-584"><a href="#L-584"><span class="linenos">584</span></a>                <span class="n">v</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
+</span><span id="L-585"><a href="#L-585"><span class="linenos">585</span></a>                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-586"><a href="#L-586"><span class="linenos">586</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="L-587"><a href="#L-587"><span class="linenos">587</span></a>                <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
+</span><span id="L-588"><a href="#L-588"><span class="linenos">588</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
+</span><span id="L-589"><a href="#L-589"><span class="linenos">589</span></a>            <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
+</span><span id="L-590"><a href="#L-590"><span class="linenos">590</span></a>        <span class="k">return</span> <span class="n">x</span>
+</span><span id="L-591"><a href="#L-591"><span class="linenos">591</span></a>
+</span><span id="L-592"><a href="#L-592"><span class="linenos">592</span></a>    <span class="k">def</span> <span class="nf">list_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
+</span><span id="L-593"><a href="#L-593"><span class="linenos">593</span></a>        <span class="k">nonlocal</span> <span class="n">ol</span>
+</span><span id="L-594"><a href="#L-594"><span class="linenos">594</span></a>        <span class="k">nonlocal</span> <span class="n">counter</span>
+</span><span id="L-595"><a href="#L-595"><span class="linenos">595</span></a>        <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-596"><a href="#L-596"><span class="linenos">596</span></a>        <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
+</span><span id="L-597"><a href="#L-597"><span class="linenos">597</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-598"><a href="#L-598"><span class="linenos">598</span></a>                <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-599"><a href="#L-599"><span class="linenos">599</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">([</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">e</span><span class="p">]):</span>
+</span><span id="L-600"><a href="#L-600"><span class="linenos">600</span></a>                <span class="n">e</span> <span class="o">=</span> <span class="n">obslist_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-601"><a href="#L-601"><span class="linenos">601</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+</span><span id="L-602"><a href="#L-602"><span class="linenos">602</span></a>                <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-603"><a href="#L-603"><span class="linenos">603</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">obstypes</span><span class="p">):</span>
+</span><span id="L-604"><a href="#L-604"><span class="linenos">604</span></a>                <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-605"><a href="#L-605"><span class="linenos">605</span></a>                <span class="n">e</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
+</span><span id="L-606"><a href="#L-606"><span class="linenos">606</span></a>                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-607"><a href="#L-607"><span class="linenos">607</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="L-608"><a href="#L-608"><span class="linenos">608</span></a>                <span class="k">if</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
+</span><span id="L-609"><a href="#L-609"><span class="linenos">609</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Dict contains string </span><span class="si">%s</span><span class="s1"> that matches the placeholder! </span><span class="si">%s</span><span class="s1"> Cannot be savely exported.&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="n">reps</span><span class="p">))</span>
+</span><span id="L-610"><a href="#L-610"><span class="linenos">610</span></a>            <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-611"><a href="#L-611"><span class="linenos">611</span></a>        <span class="k">return</span> <span class="n">x</span>
+</span><span id="L-612"><a href="#L-612"><span class="linenos">612</span></a>
+</span><span id="L-613"><a href="#L-613"><span class="linenos">613</span></a>    <span class="k">def</span> <span class="nf">obslist_replace_obs</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
+</span><span id="L-614"><a href="#L-614"><span class="linenos">614</span></a>        <span class="k">nonlocal</span> <span class="n">ol</span>
+</span><span id="L-615"><a href="#L-615"><span class="linenos">615</span></a>        <span class="k">nonlocal</span> <span class="n">counter</span>
+</span><span id="L-616"><a href="#L-616"><span class="linenos">616</span></a>        <span class="n">il</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-617"><a href="#L-617"><span class="linenos">617</span></a>        <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
+</span><span id="L-618"><a href="#L-618"><span class="linenos">618</span></a>            <span class="n">il</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-619"><a href="#L-619"><span class="linenos">619</span></a>
+</span><span id="L-620"><a href="#L-620"><span class="linenos">620</span></a>        <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">il</span><span class="p">)</span>
+</span><span id="L-621"><a href="#L-621"><span class="linenos">621</span></a>        <span class="n">x</span> <span class="o">=</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">counter</span><span class="p">)</span>
+</span><span id="L-622"><a href="#L-622"><span class="linenos">622</span></a>        <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-623"><a href="#L-623"><span class="linenos">623</span></a>        <span class="k">return</span> <span class="n">x</span>
+</span><span id="L-624"><a href="#L-624"><span class="linenos">624</span></a>
+</span><span id="L-625"><a href="#L-625"><span class="linenos">625</span></a>    <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_obs</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
+</span><span id="L-626"><a href="#L-626"><span class="linenos">626</span></a>
+</span><span id="L-627"><a href="#L-627"><span class="linenos">627</span></a>    <span class="k">return</span> <span class="n">ol</span><span class="p">,</span> <span class="n">nd</span>
+</span><span id="L-628"><a href="#L-628"><span class="linenos">628</span></a>
+</span><span id="L-629"><a href="#L-629"><span class="linenos">629</span></a>
+</span><span id="L-630"><a href="#L-630"><span class="linenos">630</span></a><span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="L-631"><a href="#L-631"><span class="linenos">631</span></a>    <span class="sd">&quot;&quot;&quot;Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
+</span><span id="L-632"><a href="#L-632"><span class="linenos">632</span></a>
+</span><span id="L-633"><a href="#L-633"><span class="linenos">633</span></a><span class="sd">    Parameters</span>
+</span><span id="L-634"><a href="#L-634"><span class="linenos">634</span></a><span class="sd">    ----------</span>
+</span><span id="L-635"><a href="#L-635"><span class="linenos">635</span></a><span class="sd">    od : dict</span>
+</span><span id="L-636"><a href="#L-636"><span class="linenos">636</span></a><span class="sd">        Dict of JSON valid structures and objects that will be exported.</span>
+</span><span id="L-637"><a href="#L-637"><span class="linenos">637</span></a><span class="sd">        At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="L-638"><a href="#L-638"><span class="linenos">638</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="L-639"><a href="#L-639"><span class="linenos">639</span></a><span class="sd">    fname : str</span>
+</span><span id="L-640"><a href="#L-640"><span class="linenos">640</span></a><span class="sd">        Filename of the output file.</span>
+</span><span id="L-641"><a href="#L-641"><span class="linenos">641</span></a><span class="sd">    description : str</span>
+</span><span id="L-642"><a href="#L-642"><span class="linenos">642</span></a><span class="sd">        Optional string that describes the contents of the json file.</span>
+</span><span id="L-643"><a href="#L-643"><span class="linenos">643</span></a><span class="sd">    indent : int</span>
+</span><span id="L-644"><a href="#L-644"><span class="linenos">644</span></a><span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
+</span><span id="L-645"><a href="#L-645"><span class="linenos">645</span></a><span class="sd">        saves disk space.</span>
+</span><span id="L-646"><a href="#L-646"><span class="linenos">646</span></a><span class="sd">    reps : str</span>
+</span><span id="L-647"><a href="#L-647"><span class="linenos">647</span></a><span class="sd">        Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
+</span><span id="L-648"><a href="#L-648"><span class="linenos">648</span></a><span class="sd">    gz : bool</span>
+</span><span id="L-649"><a href="#L-649"><span class="linenos">649</span></a><span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
+</span><span id="L-650"><a href="#L-650"><span class="linenos">650</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-651"><a href="#L-651"><span class="linenos">651</span></a>
+</span><span id="L-652"><a href="#L-652"><span class="linenos">652</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+</span><span id="L-653"><a href="#L-653"><span class="linenos">653</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;od has to be a dictionary. Did you want to use dump_to_json?&#39;</span><span class="p">)</span>
+</span><span id="L-654"><a href="#L-654"><span class="linenos">654</span></a>
+</span><span id="L-655"><a href="#L-655"><span class="linenos">655</span></a>    <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;This JSON file contains a python dictionary that has been parsed to a list of structures. &#39;</span>
+</span><span id="L-656"><a href="#L-656"><span class="linenos">656</span></a>                  <span class="s1">&#39;OBSDICT contains the dictionary, where Obs or other structures have been replaced by &#39;</span>
+</span><span id="L-657"><a href="#L-657"><span class="linenos">657</span></a>                  <span class="s1">&#39;&#39;</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;[0-9]+. The field description contains the additional description of this JSON file. &#39;</span>
+</span><span id="L-658"><a href="#L-658"><span class="linenos">658</span></a>                  <span class="s1">&#39;This file may be parsed to a dict with the pyerrors routine load_json_dict.&#39;</span><span class="p">)</span>
+</span><span id="L-659"><a href="#L-659"><span class="linenos">659</span></a>
+</span><span id="L-660"><a href="#L-660"><span class="linenos">660</span></a>    <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;INFO&#39;</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">&#39;OBSDICT&#39;</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">&#39;description&#39;</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
+</span><span id="L-661"><a href="#L-661"><span class="linenos">661</span></a>    <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
+</span><span id="L-662"><a href="#L-662"><span class="linenos">662</span></a>
+</span><span id="L-663"><a href="#L-663"><span class="linenos">663</span></a>    <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
+</span><span id="L-664"><a href="#L-664"><span class="linenos">664</span></a>
+</span><span id="L-665"><a href="#L-665"><span class="linenos">665</span></a>
+</span><span id="L-666"><a href="#L-666"><span class="linenos">666</span></a><span class="k">def</span> <span class="nf">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">ind</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
+</span><span id="L-667"><a href="#L-667"><span class="linenos">667</span></a>    <span class="sd">&quot;&quot;&quot;Parse a list of Obs or structures containing Obs and an accompanying</span>
+</span><span id="L-668"><a href="#L-668"><span class="linenos">668</span></a><span class="sd">    dict, where the structures have been replaced by placeholders to a</span>
+</span><span id="L-669"><a href="#L-669"><span class="linenos">669</span></a><span class="sd">    dict that contains the structures.</span>
+</span><span id="L-670"><a href="#L-670"><span class="linenos">670</span></a>
+</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a>
+</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a><span class="sd">    Parameters</span>
+</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a><span class="sd">    ----------</span>
+</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a><span class="sd">    ol : list</span>
+</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a><span class="sd">        List of objects -</span>
+</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a><span class="sd">        At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="L-678"><a href="#L-678"><span class="linenos">678</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="L-679"><a href="#L-679"><span class="linenos">679</span></a><span class="sd">    ind : dict</span>
+</span><span id="L-680"><a href="#L-680"><span class="linenos">680</span></a><span class="sd">        Dict that defines the structure of the resulting dict and contains placeholders</span>
+</span><span id="L-681"><a href="#L-681"><span class="linenos">681</span></a><span class="sd">    reps : str</span>
+</span><span id="L-682"><a href="#L-682"><span class="linenos">682</span></a><span class="sd">        Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
+</span><span id="L-683"><a href="#L-683"><span class="linenos">683</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-684"><a href="#L-684"><span class="linenos">684</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">reps</span><span class="o">.</span><span class="n">isalnum</span><span class="p">():</span>
+</span><span id="L-685"><a href="#L-685"><span class="linenos">685</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Placeholder string has to be alphanumeric!&#39;</span><span class="p">)</span>
+</span><span id="L-686"><a href="#L-686"><span class="linenos">686</span></a>
+</span><span id="L-687"><a href="#L-687"><span class="linenos">687</span></a>    <span class="n">counter</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-688"><a href="#L-688"><span class="linenos">688</span></a>
+</span><span id="L-689"><a href="#L-689"><span class="linenos">689</span></a>    <span class="k">def</span> <span class="nf">dict_replace_string</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="L-690"><a href="#L-690"><span class="linenos">690</span></a>        <span class="k">nonlocal</span> <span class="n">counter</span>
+</span><span id="L-691"><a href="#L-691"><span class="linenos">691</span></a>        <span class="k">nonlocal</span> <span class="n">ol</span>
+</span><span id="L-692"><a href="#L-692"><span class="linenos">692</span></a>        <span class="n">x</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-693"><a href="#L-693"><span class="linenos">693</span></a>        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="L-694"><a href="#L-694"><span class="linenos">694</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+</span><span id="L-695"><a href="#L-695"><span class="linenos">695</span></a>                <span class="n">v</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
+</span><span id="L-696"><a href="#L-696"><span class="linenos">696</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-697"><a href="#L-697"><span class="linenos">697</span></a>                <span class="n">v</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
+</span><span id="L-698"><a href="#L-698"><span class="linenos">698</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">v</span><span class="p">)):</span>
+</span><span id="L-699"><a href="#L-699"><span class="linenos">699</span></a>                <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
+</span><span id="L-700"><a href="#L-700"><span class="linenos">700</span></a>                <span class="n">v</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
+</span><span id="L-701"><a href="#L-701"><span class="linenos">701</span></a>                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-702"><a href="#L-702"><span class="linenos">702</span></a>            <span class="n">x</span><span class="p">[</span><span class="n">k</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
+</span><span id="L-703"><a href="#L-703"><span class="linenos">703</span></a>        <span class="k">return</span> <span class="n">x</span>
+</span><span id="L-704"><a href="#L-704"><span class="linenos">704</span></a>
+</span><span id="L-705"><a href="#L-705"><span class="linenos">705</span></a>    <span class="k">def</span> <span class="nf">list_replace_string</span><span class="p">(</span><span class="n">li</span><span class="p">):</span>
+</span><span id="L-706"><a href="#L-706"><span class="linenos">706</span></a>        <span class="k">nonlocal</span> <span class="n">counter</span>
+</span><span id="L-707"><a href="#L-707"><span class="linenos">707</span></a>        <span class="k">nonlocal</span> <span class="n">ol</span>
+</span><span id="L-708"><a href="#L-708"><span class="linenos">708</span></a>        <span class="n">x</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-709"><a href="#L-709"><span class="linenos">709</span></a>        <span class="k">for</span> <span class="n">e</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
+</span><span id="L-710"><a href="#L-710"><span class="linenos">710</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="L-711"><a href="#L-711"><span class="linenos">711</span></a>                <span class="n">e</span> <span class="o">=</span> <span class="n">list_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-712"><a href="#L-712"><span class="linenos">712</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+</span><span id="L-713"><a href="#L-713"><span class="linenos">713</span></a>                <span class="n">e</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-714"><a href="#L-714"><span class="linenos">714</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">e</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">bool</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">match</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;</span><span class="si">%s</span><span class="s1">[0-9]+&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">reps</span><span class="p">),</span> <span class="n">e</span><span class="p">)):</span>
+</span><span id="L-715"><a href="#L-715"><span class="linenos">715</span></a>                <span class="n">index</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">e</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">reps</span><span class="p">):])</span>
+</span><span id="L-716"><a href="#L-716"><span class="linenos">716</span></a>                <span class="n">e</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="n">index</span><span class="p">]</span>
+</span><span id="L-717"><a href="#L-717"><span class="linenos">717</span></a>                <span class="n">counter</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-718"><a href="#L-718"><span class="linenos">718</span></a>            <span class="n">x</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
+</span><span id="L-719"><a href="#L-719"><span class="linenos">719</span></a>        <span class="k">return</span> <span class="n">x</span>
+</span><span id="L-720"><a href="#L-720"><span class="linenos">720</span></a>
+</span><span id="L-721"><a href="#L-721"><span class="linenos">721</span></a>    <span class="n">nd</span> <span class="o">=</span> <span class="n">dict_replace_string</span><span class="p">(</span><span class="n">ind</span><span class="p">)</span>
+</span><span id="L-722"><a href="#L-722"><span class="linenos">722</span></a>
+</span><span id="L-723"><a href="#L-723"><span class="linenos">723</span></a>    <span class="k">if</span> <span class="n">counter</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-724"><a href="#L-724"><span class="linenos">724</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;No placeholder has been replaced! Check if reps is set correctly.&#39;</span><span class="p">)</span>
+</span><span id="L-725"><a href="#L-725"><span class="linenos">725</span></a>
+</span><span id="L-726"><a href="#L-726"><span class="linenos">726</span></a>    <span class="k">return</span> <span class="n">nd</span>
+</span><span id="L-727"><a href="#L-727"><span class="linenos">727</span></a>
+</span><span id="L-728"><a href="#L-728"><span class="linenos">728</span></a>
+</span><span id="L-729"><a href="#L-729"><span class="linenos">729</span></a><span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
+</span><span id="L-730"><a href="#L-730"><span class="linenos">730</span></a>    <span class="sd">&quot;&quot;&quot;Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
+</span><span id="L-731"><a href="#L-731"><span class="linenos">731</span></a>
+</span><span id="L-732"><a href="#L-732"><span class="linenos">732</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="L-733"><a href="#L-733"><span class="linenos">733</span></a>
+</span><span id="L-734"><a href="#L-734"><span class="linenos">734</span></a><span class="sd">    Parameters</span>
+</span><span id="L-735"><a href="#L-735"><span class="linenos">735</span></a><span class="sd">    ----------</span>
+</span><span id="L-736"><a href="#L-736"><span class="linenos">736</span></a><span class="sd">    fname : str</span>
+</span><span id="L-737"><a href="#L-737"><span class="linenos">737</span></a><span class="sd">        Filename of the input file.</span>
+</span><span id="L-738"><a href="#L-738"><span class="linenos">738</span></a><span class="sd">    verbose : bool</span>
+</span><span id="L-739"><a href="#L-739"><span class="linenos">739</span></a><span class="sd">        Print additional information that was written to the file.</span>
+</span><span id="L-740"><a href="#L-740"><span class="linenos">740</span></a><span class="sd">    gz : bool</span>
+</span><span id="L-741"><a href="#L-741"><span class="linenos">741</span></a><span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
+</span><span id="L-742"><a href="#L-742"><span class="linenos">742</span></a><span class="sd">    full_output : bool</span>
+</span><span id="L-743"><a href="#L-743"><span class="linenos">743</span></a><span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
+</span><span id="L-744"><a href="#L-744"><span class="linenos">744</span></a><span class="sd">        If False, only the data is returned.</span>
+</span><span id="L-745"><a href="#L-745"><span class="linenos">745</span></a><span class="sd">    reps : str</span>
+</span><span id="L-746"><a href="#L-746"><span class="linenos">746</span></a><span class="sd">        Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
+</span><span id="L-747"><a href="#L-747"><span class="linenos">747</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-748"><a href="#L-748"><span class="linenos">748</span></a>    <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-749"><a href="#L-749"><span class="linenos">749</span></a>    <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;description&#39;</span><span class="p">]</span>
+</span><span id="L-750"><a href="#L-750"><span class="linenos">750</span></a>    <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span>
+</span><span id="L-751"><a href="#L-751"><span class="linenos">751</span></a>    <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span>
+</span><span id="L-752"><a href="#L-752"><span class="linenos">752</span></a>    <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
+</span><span id="L-753"><a href="#L-753"><span class="linenos">753</span></a>
+</span><span id="L-754"><a href="#L-754"><span class="linenos">754</span></a>    <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
+</span><span id="L-755"><a href="#L-755"><span class="linenos">755</span></a>        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
+</span><span id="L-756"><a href="#L-756"><span class="linenos">756</span></a>        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
+</span><span id="L-757"><a href="#L-757"><span class="linenos">757</span></a>        <span class="k">return</span> <span class="n">indata</span>
+</span><span id="L-758"><a href="#L-758"><span class="linenos">758</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-759"><a href="#L-759"><span class="linenos">759</span></a>        <span class="k">return</span> <span class="n">od</span>
+</span></pre></div>
 
         </details>
 
@@ -859,244 +859,244 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Generate the string for the export of a list of Obs or structures containing Obs</span>
-<span class="sd">    to a .json(.gz) file</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    ol : list</span>
-<span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
-<span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    description : str</span>
-<span class="sd">        Optional string that describes the contents of the json file.</span>
-<span class="sd">    indent : int</span>
-<span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
-<span class="sd">        saves disk space.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">_default</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
-    <span class="n">my_encoder</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span>
-    <span class="n">_default</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span><span class="p">()</span><span class="o">.</span><span class="n">default</span>
-    <span class="n">my_encoder</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">_default</span>
-
-    <span class="k">class</span> <span class="nc">Deltalist</span><span class="p">:</span>
-        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;cnfg&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">]</span>
-
-        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
-
-        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
-                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, </span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">d</span><span class="p">)</span>
-            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
-            <span class="k">return</span> <span class="n">s</span>
-
-        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
-
-    <span class="k">class</span> <span class="nc">Floatlist</span><span class="p">:</span>
-        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;li&#39;</span><span class="p">]</span>
-
-        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">li</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">li</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[&#39;</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">)):</span>
-                <span class="k">if</span> <span class="n">i</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, &#39;</span>
-                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
-            <span class="k">return</span> <span class="n">s</span>
-
-        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
-        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
-            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-                <span class="n">rd</span> <span class="o">=</span> <span class="p">{}</span>
-                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">r_name</span>
-                <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">r_name</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
-                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
-                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">])):</span>
-                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">]])</span>
-                    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
-                        <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
-                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Deltalist</span><span class="p">(</span><span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rd</span><span class="p">)</span>
-            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">dl</span>
-
-    <span class="k">def</span> <span class="nf">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
-        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">))</span>
-            <span class="n">ncov</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
-                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-                <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
-                    <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
-                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">dl</span>
-
-    <span class="k">def</span> <span class="nf">write_Obs_to_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Obs&#39;</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1&#39;</span>
-        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">]</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
-        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
-        <span class="k">return</span> <span class="n">d</span>
-
-    <span class="k">def</span> <span class="nf">write_List_to_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
-        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;List&#39;</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
-        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
-        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
-        <span class="k">return</span> <span class="n">d</span>
-
-    <span class="k">def</span> <span class="nf">write_Array_to_dict</span><span class="p">(</span><span class="n">oa</span><span class="p">):</span>
-        <span class="n">ol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">oa</span><span class="p">)</span>
-        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Array&#39;</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">oa</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
-        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
-        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
-        <span class="k">return</span> <span class="n">d</span>
-
-    <span class="k">def</span> <span class="nf">_nan_Obs_like</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
-        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">))</span>
-            <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
-            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
-        <span class="n">my_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-        <span class="n">my_obs</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span><span class="p">:</span>
-            <span class="n">my_obs</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">my_obs</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">reweighted</span>
-        <span class="n">my_obs</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">is_merged</span>
-        <span class="k">return</span> <span class="n">my_obs</span>
-
-    <span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
-        <span class="n">first_not_none</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
-        <span class="n">dummy_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="n">dummy_array</span><span class="p">[:]</span> <span class="o">=</span> <span class="n">_nan_Obs_like</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">first_not_none</span><span class="p">]</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">dummy_array</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
-        <span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">))</span>
-        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Corr&#39;</span>
-        <span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="s1">&#39;tag&#39;</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">corr_meta_data</span><span class="p">]</span>
-        <span class="n">taglist</span> <span class="o">=</span> <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
-        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>  <span class="c1"># tag is now a dictionary, that contains the previous taglist in the key &quot;tag&quot;</span>
-        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
-        <span class="k">if</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;prange&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span>
-        <span class="k">return</span> <span class="n">dat</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-        <span class="n">ol</span> <span class="o">=</span> <span class="p">[</span><span class="n">ol</span><span class="p">]</span>
-
-    <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;pyerrors </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1.0&#39;</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z&#39;</span><span class="p">)</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">&#39;, &#39;</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
-
-    <span class="k">if</span> <span class="n">description</span><span class="p">:</span>
-        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
-    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">io</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Obs_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_List_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
-            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Corr_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unkown datatype.&quot;</span><span class="p">)</span>
-
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="k">for</span> <span class="n">chunk</span> <span class="ow">in</span> <span class="n">my_encoder</span><span class="p">(</span><span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">ensure_ascii</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">iterencode</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
-        <span class="n">jsonstring</span> <span class="o">+=</span> <span class="n">chunk</span>
-
-    <span class="k">del</span> <span class="n">d</span>
-    <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">remove_quotationmarks_split</span><span class="p">(</span><span class="n">split</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Workaround for un-quoting of delta lists, adds 5% of work</span>
-<span class="sd">           but is save, compared to a simple replace that could destroy the structure</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">split</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="s1">&#39;&quot;deltas&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;cov&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;grad&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]:</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="kc">True</span>
-            <span class="k">if</span> <span class="n">deltas</span><span class="p">:</span>
-                <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;&quot;[&#39;</span><span class="p">,</span> <span class="s1">&#39;[&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;]&quot;&#39;</span><span class="p">,</span> <span class="s1">&#39;]&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;]&#39;</span><span class="p">:</span>
-                    <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
-
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks_split</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;nan&#39;</span><span class="p">,</span> <span class="s1">&#39;NaN&#39;</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">jsonstring</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="create_json_string-18"><a href="#create_json_string-18"><span class="linenos"> 18</span></a><span class="k">def</span> <span class="nf">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="create_json_string-19"><a href="#create_json_string-19"><span class="linenos"> 19</span></a>    <span class="sd">&quot;&quot;&quot;Generate the string for the export of a list of Obs or structures containing Obs</span>
+</span><span id="create_json_string-20"><a href="#create_json_string-20"><span class="linenos"> 20</span></a><span class="sd">    to a .json(.gz) file</span>
+</span><span id="create_json_string-21"><a href="#create_json_string-21"><span class="linenos"> 21</span></a>
+</span><span id="create_json_string-22"><a href="#create_json_string-22"><span class="linenos"> 22</span></a><span class="sd">    Parameters</span>
+</span><span id="create_json_string-23"><a href="#create_json_string-23"><span class="linenos"> 23</span></a><span class="sd">    ----------</span>
+</span><span id="create_json_string-24"><a href="#create_json_string-24"><span class="linenos"> 24</span></a><span class="sd">    ol : list</span>
+</span><span id="create_json_string-25"><a href="#create_json_string-25"><span class="linenos"> 25</span></a><span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
+</span><span id="create_json_string-26"><a href="#create_json_string-26"><span class="linenos"> 26</span></a><span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="create_json_string-27"><a href="#create_json_string-27"><span class="linenos"> 27</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="create_json_string-28"><a href="#create_json_string-28"><span class="linenos"> 28</span></a><span class="sd">    description : str</span>
+</span><span id="create_json_string-29"><a href="#create_json_string-29"><span class="linenos"> 29</span></a><span class="sd">        Optional string that describes the contents of the json file.</span>
+</span><span id="create_json_string-30"><a href="#create_json_string-30"><span class="linenos"> 30</span></a><span class="sd">    indent : int</span>
+</span><span id="create_json_string-31"><a href="#create_json_string-31"><span class="linenos"> 31</span></a><span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
+</span><span id="create_json_string-32"><a href="#create_json_string-32"><span class="linenos"> 32</span></a><span class="sd">        saves disk space.</span>
+</span><span id="create_json_string-33"><a href="#create_json_string-33"><span class="linenos"> 33</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="create_json_string-34"><a href="#create_json_string-34"><span class="linenos"> 34</span></a>
+</span><span id="create_json_string-35"><a href="#create_json_string-35"><span class="linenos"> 35</span></a>    <span class="k">def</span> <span class="nf">_default</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
+</span><span id="create_json_string-36"><a href="#create_json_string-36"><span class="linenos"> 36</span></a>        <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+</span><span id="create_json_string-37"><a href="#create_json_string-37"><span class="linenos"> 37</span></a>    <span class="n">my_encoder</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span>
+</span><span id="create_json_string-38"><a href="#create_json_string-38"><span class="linenos"> 38</span></a>    <span class="n">_default</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span><span class="p">()</span><span class="o">.</span><span class="n">default</span>
+</span><span id="create_json_string-39"><a href="#create_json_string-39"><span class="linenos"> 39</span></a>    <span class="n">my_encoder</span><span class="o">.</span><span class="n">default</span> <span class="o">=</span> <span class="n">_default</span>
+</span><span id="create_json_string-40"><a href="#create_json_string-40"><span class="linenos"> 40</span></a>
+</span><span id="create_json_string-41"><a href="#create_json_string-41"><span class="linenos"> 41</span></a>    <span class="k">class</span> <span class="nc">Deltalist</span><span class="p">:</span>
+</span><span id="create_json_string-42"><a href="#create_json_string-42"><span class="linenos"> 42</span></a>        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;cnfg&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">]</span>
+</span><span id="create_json_string-43"><a href="#create_json_string-43"><span class="linenos"> 43</span></a>
+</span><span id="create_json_string-44"><a href="#create_json_string-44"><span class="linenos"> 44</span></a>        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
+</span><span id="create_json_string-45"><a href="#create_json_string-45"><span class="linenos"> 45</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="create_json_string-46"><a href="#create_json_string-46"><span class="linenos"> 46</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="n">li</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span>
+</span><span id="create_json_string-47"><a href="#create_json_string-47"><span class="linenos"> 47</span></a>
+</span><span id="create_json_string-48"><a href="#create_json_string-48"><span class="linenos"> 48</span></a>        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="create_json_string-49"><a href="#create_json_string-49"><span class="linenos"> 49</span></a>            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">cnfg</span><span class="p">)</span>
+</span><span id="create_json_string-50"><a href="#create_json_string-50"><span class="linenos"> 50</span></a>            <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
+</span><span id="create_json_string-51"><a href="#create_json_string-51"><span class="linenos"> 51</span></a>                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, </span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">d</span><span class="p">)</span>
+</span><span id="create_json_string-52"><a href="#create_json_string-52"><span class="linenos"> 52</span></a>            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
+</span><span id="create_json_string-53"><a href="#create_json_string-53"><span class="linenos"> 53</span></a>            <span class="k">return</span> <span class="n">s</span>
+</span><span id="create_json_string-54"><a href="#create_json_string-54"><span class="linenos"> 54</span></a>
+</span><span id="create_json_string-55"><a href="#create_json_string-55"><span class="linenos"> 55</span></a>        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="create_json_string-56"><a href="#create_json_string-56"><span class="linenos"> 56</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
+</span><span id="create_json_string-57"><a href="#create_json_string-57"><span class="linenos"> 57</span></a>
+</span><span id="create_json_string-58"><a href="#create_json_string-58"><span class="linenos"> 58</span></a>    <span class="k">class</span> <span class="nc">Floatlist</span><span class="p">:</span>
+</span><span id="create_json_string-59"><a href="#create_json_string-59"><span class="linenos"> 59</span></a>        <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;li&#39;</span><span class="p">]</span>
+</span><span id="create_json_string-60"><a href="#create_json_string-60"><span class="linenos"> 60</span></a>
+</span><span id="create_json_string-61"><a href="#create_json_string-61"><span class="linenos"> 61</span></a>        <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">li</span><span class="p">):</span>
+</span><span id="create_json_string-62"><a href="#create_json_string-62"><span class="linenos"> 62</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">li</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">li</span><span class="p">)</span>
+</span><span id="create_json_string-63"><a href="#create_json_string-63"><span class="linenos"> 63</span></a>
+</span><span id="create_json_string-64"><a href="#create_json_string-64"><span class="linenos"> 64</span></a>        <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="create_json_string-65"><a href="#create_json_string-65"><span class="linenos"> 65</span></a>            <span class="n">s</span> <span class="o">=</span> <span class="s1">&#39;[&#39;</span>
+</span><span id="create_json_string-66"><a href="#create_json_string-66"><span class="linenos"> 66</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">)):</span>
+</span><span id="create_json_string-67"><a href="#create_json_string-67"><span class="linenos"> 67</span></a>                <span class="k">if</span> <span class="n">i</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="create_json_string-68"><a href="#create_json_string-68"><span class="linenos"> 68</span></a>                    <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;, &#39;</span>
+</span><span id="create_json_string-69"><a href="#create_json_string-69"><span class="linenos"> 69</span></a>                <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="si">%1.15e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">li</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="create_json_string-70"><a href="#create_json_string-70"><span class="linenos"> 70</span></a>            <span class="n">s</span> <span class="o">+=</span> <span class="s1">&#39;]&#39;</span>
+</span><span id="create_json_string-71"><a href="#create_json_string-71"><span class="linenos"> 71</span></a>            <span class="k">return</span> <span class="n">s</span>
+</span><span id="create_json_string-72"><a href="#create_json_string-72"><span class="linenos"> 72</span></a>
+</span><span id="create_json_string-73"><a href="#create_json_string-73"><span class="linenos"> 73</span></a>        <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="create_json_string-74"><a href="#create_json_string-74"><span class="linenos"> 74</span></a>            <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="fm">__repr__</span><span class="p">()</span>
+</span><span id="create_json_string-75"><a href="#create_json_string-75"><span class="linenos"> 75</span></a>
+</span><span id="create_json_string-76"><a href="#create_json_string-76"><span class="linenos"> 76</span></a>    <span class="k">def</span> <span class="nf">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
+</span><span id="create_json_string-77"><a href="#create_json_string-77"><span class="linenos"> 77</span></a>        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-78"><a href="#create_json_string-78"><span class="linenos"> 78</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
+</span><span id="create_json_string-79"><a href="#create_json_string-79"><span class="linenos"> 79</span></a>            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="create_json_string-80"><a href="#create_json_string-80"><span class="linenos"> 80</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
+</span><span id="create_json_string-81"><a href="#create_json_string-81"><span class="linenos"> 81</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-82"><a href="#create_json_string-82"><span class="linenos"> 82</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="create_json_string-83"><a href="#create_json_string-83"><span class="linenos"> 83</span></a>                <span class="n">rd</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="create_json_string-84"><a href="#create_json_string-84"><span class="linenos"> 84</span></a>                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;name&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">r_name</span>
+</span><span id="create_json_string-85"><a href="#create_json_string-85"><span class="linenos"> 85</span></a>                <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">r_name</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
+</span><span id="create_json_string-86"><a href="#create_json_string-86"><span class="linenos"> 86</span></a>                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;is_merged&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="create_json_string-87"><a href="#create_json_string-87"><span class="linenos"> 87</span></a>                <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-88"><a href="#create_json_string-88"><span class="linenos"> 88</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">])):</span>
+</span><span id="create_json_string-89"><a href="#create_json_string-89"><span class="linenos"> 89</span></a>                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">]])</span>
+</span><span id="create_json_string-90"><a href="#create_json_string-90"><span class="linenos"> 90</span></a>                    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
+</span><span id="create_json_string-91"><a href="#create_json_string-91"><span class="linenos"> 91</span></a>                        <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="n">i</span><span class="p">])</span>
+</span><span id="create_json_string-92"><a href="#create_json_string-92"><span class="linenos"> 92</span></a>                    <span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Deltalist</span><span class="p">(</span><span class="n">rd</span><span class="p">[</span><span class="s1">&#39;deltas&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="create_json_string-93"><a href="#create_json_string-93"><span class="linenos"> 93</span></a>                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;replica&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rd</span><span class="p">)</span>
+</span><span id="create_json_string-94"><a href="#create_json_string-94"><span class="linenos"> 94</span></a>            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
+</span><span id="create_json_string-95"><a href="#create_json_string-95"><span class="linenos"> 95</span></a>        <span class="k">return</span> <span class="n">dl</span>
+</span><span id="create_json_string-96"><a href="#create_json_string-96"><span class="linenos"> 96</span></a>
+</span><span id="create_json_string-97"><a href="#create_json_string-97"><span class="linenos"> 97</span></a>    <span class="k">def</span> <span class="nf">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
+</span><span id="create_json_string-98"><a href="#create_json_string-98"><span class="linenos"> 98</span></a>        <span class="n">dl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-99"><a href="#create_json_string-99"><span class="linenos"> 99</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="create_json_string-100"><a href="#create_json_string-100"><span class="linenos">100</span></a>            <span class="n">ed</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="create_json_string-101"><a href="#create_json_string-101"><span class="linenos">101</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;id&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">name</span>
+</span><span id="create_json_string-102"><a href="#create_json_string-102"><span class="linenos">102</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="create_json_string-103"><a href="#create_json_string-103"><span class="linenos">103</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;cov&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">))</span>
+</span><span id="create_json_string-104"><a href="#create_json_string-104"><span class="linenos">104</span></a>            <span class="n">ncov</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="create_json_string-105"><a href="#create_json_string-105"><span class="linenos">105</span></a>            <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-106"><a href="#create_json_string-106"><span class="linenos">106</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncov</span><span class="p">):</span>
+</span><span id="create_json_string-107"><a href="#create_json_string-107"><span class="linenos">107</span></a>                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="create_json_string-108"><a href="#create_json_string-108"><span class="linenos">108</span></a>                <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
+</span><span id="create_json_string-109"><a href="#create_json_string-109"><span class="linenos">109</span></a>                    <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="create_json_string-110"><a href="#create_json_string-110"><span class="linenos">110</span></a>                <span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">Floatlist</span><span class="p">(</span><span class="n">ed</span><span class="p">[</span><span class="s1">&#39;grad&#39;</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="create_json_string-111"><a href="#create_json_string-111"><span class="linenos">111</span></a>            <span class="n">dl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ed</span><span class="p">)</span>
+</span><span id="create_json_string-112"><a href="#create_json_string-112"><span class="linenos">112</span></a>        <span class="k">return</span> <span class="n">dl</span>
+</span><span id="create_json_string-113"><a href="#create_json_string-113"><span class="linenos">113</span></a>
+</span><span id="create_json_string-114"><a href="#create_json_string-114"><span class="linenos">114</span></a>    <span class="k">def</span> <span class="nf">write_Obs_to_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
+</span><span id="create_json_string-115"><a href="#create_json_string-115"><span class="linenos">115</span></a>        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="create_json_string-116"><a href="#create_json_string-116"><span class="linenos">116</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Obs&#39;</span>
+</span><span id="create_json_string-117"><a href="#create_json_string-117"><span class="linenos">117</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1&#39;</span>
+</span><span id="create_json_string-118"><a href="#create_json_string-118"><span class="linenos">118</span></a>        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">:</span>
+</span><span id="create_json_string-119"><a href="#create_json_string-119"><span class="linenos">119</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span><span class="p">]</span>
+</span><span id="create_json_string-120"><a href="#create_json_string-120"><span class="linenos">120</span></a>        <span class="k">if</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="create_json_string-121"><a href="#create_json_string-121"><span class="linenos">121</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="create_json_string-122"><a href="#create_json_string-122"><span class="linenos">122</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span><span class="p">]</span>
+</span><span id="create_json_string-123"><a href="#create_json_string-123"><span class="linenos">123</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
+</span><span id="create_json_string-124"><a href="#create_json_string-124"><span class="linenos">124</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="create_json_string-125"><a href="#create_json_string-125"><span class="linenos">125</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
+</span><span id="create_json_string-126"><a href="#create_json_string-126"><span class="linenos">126</span></a>        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">([</span><span class="n">o</span><span class="p">])</span>
+</span><span id="create_json_string-127"><a href="#create_json_string-127"><span class="linenos">127</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="create_json_string-128"><a href="#create_json_string-128"><span class="linenos">128</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
+</span><span id="create_json_string-129"><a href="#create_json_string-129"><span class="linenos">129</span></a>        <span class="k">return</span> <span class="n">d</span>
+</span><span id="create_json_string-130"><a href="#create_json_string-130"><span class="linenos">130</span></a>
+</span><span id="create_json_string-131"><a href="#create_json_string-131"><span class="linenos">131</span></a>    <span class="k">def</span> <span class="nf">write_List_to_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">):</span>
+</span><span id="create_json_string-132"><a href="#create_json_string-132"><span class="linenos">132</span></a>        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="create_json_string-133"><a href="#create_json_string-133"><span class="linenos">133</span></a>        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="create_json_string-134"><a href="#create_json_string-134"><span class="linenos">134</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;List&#39;</span>
+</span><span id="create_json_string-135"><a href="#create_json_string-135"><span class="linenos">135</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;</span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="create_json_string-136"><a href="#create_json_string-136"><span class="linenos">136</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="create_json_string-137"><a href="#create_json_string-137"><span class="linenos">137</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
+</span><span id="create_json_string-138"><a href="#create_json_string-138"><span class="linenos">138</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
+</span><span id="create_json_string-139"><a href="#create_json_string-139"><span class="linenos">139</span></a>        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="create_json_string-140"><a href="#create_json_string-140"><span class="linenos">140</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="create_json_string-141"><a href="#create_json_string-141"><span class="linenos">141</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="create_json_string-142"><a href="#create_json_string-142"><span class="linenos">142</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="create_json_string-143"><a href="#create_json_string-143"><span class="linenos">143</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="create_json_string-144"><a href="#create_json_string-144"><span class="linenos">144</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
+</span><span id="create_json_string-145"><a href="#create_json_string-145"><span class="linenos">145</span></a>        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="create_json_string-146"><a href="#create_json_string-146"><span class="linenos">146</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="create_json_string-147"><a href="#create_json_string-147"><span class="linenos">147</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
+</span><span id="create_json_string-148"><a href="#create_json_string-148"><span class="linenos">148</span></a>        <span class="k">return</span> <span class="n">d</span>
+</span><span id="create_json_string-149"><a href="#create_json_string-149"><span class="linenos">149</span></a>
+</span><span id="create_json_string-150"><a href="#create_json_string-150"><span class="linenos">150</span></a>    <span class="k">def</span> <span class="nf">write_Array_to_dict</span><span class="p">(</span><span class="n">oa</span><span class="p">):</span>
+</span><span id="create_json_string-151"><a href="#create_json_string-151"><span class="linenos">151</span></a>        <span class="n">ol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">ravel</span><span class="p">(</span><span class="n">oa</span><span class="p">)</span>
+</span><span id="create_json_string-152"><a href="#create_json_string-152"><span class="linenos">152</span></a>        <span class="n">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="create_json_string-153"><a href="#create_json_string-153"><span class="linenos">153</span></a>        <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="create_json_string-154"><a href="#create_json_string-154"><span class="linenos">154</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Array&#39;</span>
+</span><span id="create_json_string-155"><a href="#create_json_string-155"><span class="linenos">155</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;layout&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">oa</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span><span class="o">.</span><span class="n">lstrip</span><span class="p">(</span><span class="s1">&#39;(&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;)&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">rstrip</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="create_json_string-156"><a href="#create_json_string-156"><span class="linenos">156</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">tag</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="create_json_string-157"><a href="#create_json_string-157"><span class="linenos">157</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">tag</span> <span class="ow">in</span> <span class="n">taglist</span><span class="p">]):</span>
+</span><span id="create_json_string-158"><a href="#create_json_string-158"><span class="linenos">158</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
+</span><span id="create_json_string-159"><a href="#create_json_string-159"><span class="linenos">159</span></a>        <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="create_json_string-160"><a href="#create_json_string-160"><span class="linenos">160</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;reweighted&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="create_json_string-161"><a href="#create_json_string-161"><span class="linenos">161</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;value&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">]</span>
+</span><span id="create_json_string-162"><a href="#create_json_string-162"><span class="linenos">162</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">_gen_data_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="create_json_string-163"><a href="#create_json_string-163"><span class="linenos">163</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="create_json_string-164"><a href="#create_json_string-164"><span class="linenos">164</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;data&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span>
+</span><span id="create_json_string-165"><a href="#create_json_string-165"><span class="linenos">165</span></a>        <span class="n">cdata</span> <span class="o">=</span> <span class="n">_gen_cdata_d_from_list</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span>
+</span><span id="create_json_string-166"><a href="#create_json_string-166"><span class="linenos">166</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">cdata</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="create_json_string-167"><a href="#create_json_string-167"><span class="linenos">167</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;cdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
+</span><span id="create_json_string-168"><a href="#create_json_string-168"><span class="linenos">168</span></a>        <span class="k">return</span> <span class="n">d</span>
+</span><span id="create_json_string-169"><a href="#create_json_string-169"><span class="linenos">169</span></a>
+</span><span id="create_json_string-170"><a href="#create_json_string-170"><span class="linenos">170</span></a>    <span class="k">def</span> <span class="nf">_nan_Obs_like</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
+</span><span id="create_json_string-171"><a href="#create_json_string-171"><span class="linenos">171</span></a>        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-172"><a href="#create_json_string-172"><span class="linenos">172</span></a>        <span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-173"><a href="#create_json_string-173"><span class="linenos">173</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-174"><a href="#create_json_string-174"><span class="linenos">174</span></a>        <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+</span><span id="create_json_string-175"><a href="#create_json_string-175"><span class="linenos">175</span></a>            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">))</span>
+</span><span id="create_json_string-176"><a href="#create_json_string-176"><span class="linenos">176</span></a>            <span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+</span><span id="create_json_string-177"><a href="#create_json_string-177"><span class="linenos">177</span></a>            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+</span><span id="create_json_string-178"><a href="#create_json_string-178"><span class="linenos">178</span></a>        <span class="n">my_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="create_json_string-179"><a href="#create_json_string-179"><span class="linenos">179</span></a>        <span class="n">my_obs</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span>
+</span><span id="create_json_string-180"><a href="#create_json_string-180"><span class="linenos">180</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">_covobs</span><span class="p">:</span>
+</span><span id="create_json_string-181"><a href="#create_json_string-181"><span class="linenos">181</span></a>            <span class="n">my_obs</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="create_json_string-182"><a href="#create_json_string-182"><span class="linenos">182</span></a>        <span class="n">my_obs</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="create_json_string-183"><a href="#create_json_string-183"><span class="linenos">183</span></a>        <span class="n">my_obs</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">is_merged</span>
+</span><span id="create_json_string-184"><a href="#create_json_string-184"><span class="linenos">184</span></a>        <span class="k">return</span> <span class="n">my_obs</span>
+</span><span id="create_json_string-185"><a href="#create_json_string-185"><span class="linenos">185</span></a>
+</span><span id="create_json_string-186"><a href="#create_json_string-186"><span class="linenos">186</span></a>    <span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
+</span><span id="create_json_string-187"><a href="#create_json_string-187"><span class="linenos">187</span></a>        <span class="n">first_not_none</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
+</span><span id="create_json_string-188"><a href="#create_json_string-188"><span class="linenos">188</span></a>        <span class="n">dummy_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="create_json_string-189"><a href="#create_json_string-189"><span class="linenos">189</span></a>        <span class="n">dummy_array</span><span class="p">[:]</span> <span class="o">=</span> <span class="n">_nan_Obs_like</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">first_not_none</span><span class="p">]</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="create_json_string-190"><a href="#create_json_string-190"><span class="linenos">190</span></a>        <span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">dummy_array</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
+</span><span id="create_json_string-191"><a href="#create_json_string-191"><span class="linenos">191</span></a>        <span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">))</span>
+</span><span id="create_json_string-192"><a href="#create_json_string-192"><span class="linenos">192</span></a>        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;type&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;Corr&#39;</span>
+</span><span id="create_json_string-193"><a href="#create_json_string-193"><span class="linenos">193</span></a>        <span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="create_json_string-194"><a href="#create_json_string-194"><span class="linenos">194</span></a>        <span class="k">if</span> <span class="s1">&#39;tag&#39;</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+</span><span id="create_json_string-195"><a href="#create_json_string-195"><span class="linenos">195</span></a>            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
+</span><span id="create_json_string-196"><a href="#create_json_string-196"><span class="linenos">196</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="create_json_string-197"><a href="#create_json_string-197"><span class="linenos">197</span></a>            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">corr_meta_data</span><span class="p">]</span>
+</span><span id="create_json_string-198"><a href="#create_json_string-198"><span class="linenos">198</span></a>        <span class="n">taglist</span> <span class="o">=</span> <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span>
+</span><span id="create_json_string-199"><a href="#create_json_string-199"><span class="linenos">199</span></a>        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span>  <span class="c1"># tag is now a dictionary, that contains the previous taglist in the key &quot;tag&quot;</span>
+</span><span id="create_json_string-200"><a href="#create_json_string-200"><span class="linenos">200</span></a>        <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;tag&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span>
+</span><span id="create_json_string-201"><a href="#create_json_string-201"><span class="linenos">201</span></a>        <span class="k">if</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="create_json_string-202"><a href="#create_json_string-202"><span class="linenos">202</span></a>            <span class="n">dat</span><span class="p">[</span><span class="s1">&#39;tag&#39;</span><span class="p">][</span><span class="s1">&#39;prange&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">prange</span>
+</span><span id="create_json_string-203"><a href="#create_json_string-203"><span class="linenos">203</span></a>        <span class="k">return</span> <span class="n">dat</span>
+</span><span id="create_json_string-204"><a href="#create_json_string-204"><span class="linenos">204</span></a>
+</span><span id="create_json_string-205"><a href="#create_json_string-205"><span class="linenos">205</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="create_json_string-206"><a href="#create_json_string-206"><span class="linenos">206</span></a>        <span class="n">ol</span> <span class="o">=</span> <span class="p">[</span><span class="n">ol</span><span class="p">]</span>
+</span><span id="create_json_string-207"><a href="#create_json_string-207"><span class="linenos">207</span></a>
+</span><span id="create_json_string-208"><a href="#create_json_string-208"><span class="linenos">208</span></a>    <span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="create_json_string-209"><a href="#create_json_string-209"><span class="linenos">209</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;program&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;pyerrors </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
+</span><span id="create_json_string-210"><a href="#create_json_string-210"><span class="linenos">210</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;version&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="s1">&#39;1.0&#39;</span>
+</span><span id="create_json_string-211"><a href="#create_json_string-211"><span class="linenos">211</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;who&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
+</span><span id="create_json_string-212"><a href="#create_json_string-212"><span class="linenos">212</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;date&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">&#39;%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z&#39;</span><span class="p">)</span>
+</span><span id="create_json_string-213"><a href="#create_json_string-213"><span class="linenos">213</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;host&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">&#39;, &#39;</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
+</span><span id="create_json_string-214"><a href="#create_json_string-214"><span class="linenos">214</span></a>
+</span><span id="create_json_string-215"><a href="#create_json_string-215"><span class="linenos">215</span></a>    <span class="k">if</span> <span class="n">description</span><span class="p">:</span>
+</span><span id="create_json_string-216"><a href="#create_json_string-216"><span class="linenos">216</span></a>        <span class="n">d</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
+</span><span id="create_json_string-217"><a href="#create_json_string-217"><span class="linenos">217</span></a>    <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="create_json_string-218"><a href="#create_json_string-218"><span class="linenos">218</span></a>    <span class="k">for</span> <span class="n">io</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">:</span>
+</span><span id="create_json_string-219"><a href="#create_json_string-219"><span class="linenos">219</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="create_json_string-220"><a href="#create_json_string-220"><span class="linenos">220</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Obs_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="create_json_string-221"><a href="#create_json_string-221"><span class="linenos">221</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+</span><span id="create_json_string-222"><a href="#create_json_string-222"><span class="linenos">222</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_List_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="create_json_string-223"><a href="#create_json_string-223"><span class="linenos">223</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="create_json_string-224"><a href="#create_json_string-224"><span class="linenos">224</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="create_json_string-225"><a href="#create_json_string-225"><span class="linenos">225</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">io</span><span class="p">,</span> <span class="n">Corr</span><span class="p">):</span>
+</span><span id="create_json_string-226"><a href="#create_json_string-226"><span class="linenos">226</span></a>            <span class="n">d</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">write_Corr_to_dict</span><span class="p">(</span><span class="n">io</span><span class="p">))</span>
+</span><span id="create_json_string-227"><a href="#create_json_string-227"><span class="linenos">227</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="create_json_string-228"><a href="#create_json_string-228"><span class="linenos">228</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unkown datatype.&quot;</span><span class="p">)</span>
+</span><span id="create_json_string-229"><a href="#create_json_string-229"><span class="linenos">229</span></a>
+</span><span id="create_json_string-230"><a href="#create_json_string-230"><span class="linenos">230</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="create_json_string-231"><a href="#create_json_string-231"><span class="linenos">231</span></a>    <span class="k">for</span> <span class="n">chunk</span> <span class="ow">in</span> <span class="n">my_encoder</span><span class="p">(</span><span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">ensure_ascii</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span><span class="o">.</span><span class="n">iterencode</span><span class="p">(</span><span class="n">d</span><span class="p">):</span>
+</span><span id="create_json_string-232"><a href="#create_json_string-232"><span class="linenos">232</span></a>        <span class="n">jsonstring</span> <span class="o">+=</span> <span class="n">chunk</span>
+</span><span id="create_json_string-233"><a href="#create_json_string-233"><span class="linenos">233</span></a>
+</span><span id="create_json_string-234"><a href="#create_json_string-234"><span class="linenos">234</span></a>    <span class="k">del</span> <span class="n">d</span>
+</span><span id="create_json_string-235"><a href="#create_json_string-235"><span class="linenos">235</span></a>    <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
+</span><span id="create_json_string-236"><a href="#create_json_string-236"><span class="linenos">236</span></a>
+</span><span id="create_json_string-237"><a href="#create_json_string-237"><span class="linenos">237</span></a>    <span class="k">def</span> <span class="nf">remove_quotationmarks_split</span><span class="p">(</span><span class="n">split</span><span class="p">):</span>
+</span><span id="create_json_string-238"><a href="#create_json_string-238"><span class="linenos">238</span></a>        <span class="sd">&quot;&quot;&quot;Workaround for un-quoting of delta lists, adds 5% of work</span>
+</span><span id="create_json_string-239"><a href="#create_json_string-239"><span class="linenos">239</span></a><span class="sd">           but is save, compared to a simple replace that could destroy the structure</span>
+</span><span id="create_json_string-240"><a href="#create_json_string-240"><span class="linenos">240</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="create_json_string-241"><a href="#create_json_string-241"><span class="linenos">241</span></a>        <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="create_json_string-242"><a href="#create_json_string-242"><span class="linenos">242</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">split</span><span class="p">)):</span>
+</span><span id="create_json_string-243"><a href="#create_json_string-243"><span class="linenos">243</span></a>            <span class="k">if</span> <span class="s1">&#39;&quot;deltas&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;cov&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="ow">or</span> <span class="s1">&#39;&quot;grad&quot;:&#39;</span> <span class="ow">in</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]:</span>
+</span><span id="create_json_string-244"><a href="#create_json_string-244"><span class="linenos">244</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="create_json_string-245"><a href="#create_json_string-245"><span class="linenos">245</span></a>            <span class="k">if</span> <span class="n">deltas</span><span class="p">:</span>
+</span><span id="create_json_string-246"><a href="#create_json_string-246"><span class="linenos">246</span></a>                <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;&quot;[&#39;</span><span class="p">,</span> <span class="s1">&#39;[&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;]&quot;&#39;</span><span class="p">,</span> <span class="s1">&#39;]&#39;</span><span class="p">)</span>
+</span><span id="create_json_string-247"><a href="#create_json_string-247"><span class="linenos">247</span></a>                <span class="k">if</span> <span class="n">split</span><span class="p">[</span><span class="n">i</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s1">&#39;]&#39;</span><span class="p">:</span>
+</span><span id="create_json_string-248"><a href="#create_json_string-248"><span class="linenos">248</span></a>                    <span class="n">deltas</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="create_json_string-249"><a href="#create_json_string-249"><span class="linenos">249</span></a>        <span class="k">return</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
+</span><span id="create_json_string-250"><a href="#create_json_string-250"><span class="linenos">250</span></a>
+</span><span id="create_json_string-251"><a href="#create_json_string-251"><span class="linenos">251</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">)</span>
+</span><span id="create_json_string-252"><a href="#create_json_string-252"><span class="linenos">252</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks_split</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
+</span><span id="create_json_string-253"><a href="#create_json_string-253"><span class="linenos">253</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">&#39;nan&#39;</span><span class="p">,</span> <span class="s1">&#39;NaN&#39;</span><span class="p">)</span>
+</span><span id="create_json_string-254"><a href="#create_json_string-254"><span class="linenos">254</span></a>    <span class="k">return</span> <span class="n">jsonstring</span>
+</span></pre></div>
 
         </details>
 
@@ -1130,42 +1130,42 @@ saves disk space.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .json(.gz) file</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    ol : list</span>
-<span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
-<span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the output file.</span>
-<span class="sd">    description : str</span>
-<span class="sd">        Optional string that describes the contents of the json file.</span>
-<span class="sd">    indent : int</span>
-<span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
-<span class="sd">        saves disk space.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="p">,</span> <span class="n">indent</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
-
-    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
-
-        <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
-        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
-        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
-    <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="dump_to_json-257"><a href="#dump_to_json-257"><span class="linenos">257</span></a><span class="k">def</span> <span class="nf">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="dump_to_json-258"><a href="#dump_to_json-258"><span class="linenos">258</span></a>    <span class="sd">&quot;&quot;&quot;Export a list of Obs or structures containing Obs to a .json(.gz) file</span>
+</span><span id="dump_to_json-259"><a href="#dump_to_json-259"><span class="linenos">259</span></a>
+</span><span id="dump_to_json-260"><a href="#dump_to_json-260"><span class="linenos">260</span></a><span class="sd">    Parameters</span>
+</span><span id="dump_to_json-261"><a href="#dump_to_json-261"><span class="linenos">261</span></a><span class="sd">    ----------</span>
+</span><span id="dump_to_json-262"><a href="#dump_to_json-262"><span class="linenos">262</span></a><span class="sd">    ol : list</span>
+</span><span id="dump_to_json-263"><a href="#dump_to_json-263"><span class="linenos">263</span></a><span class="sd">        List of objects that will be exported. At the moment, these objects can be</span>
+</span><span id="dump_to_json-264"><a href="#dump_to_json-264"><span class="linenos">264</span></a><span class="sd">        either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="dump_to_json-265"><a href="#dump_to_json-265"><span class="linenos">265</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="dump_to_json-266"><a href="#dump_to_json-266"><span class="linenos">266</span></a><span class="sd">    fname : str</span>
+</span><span id="dump_to_json-267"><a href="#dump_to_json-267"><span class="linenos">267</span></a><span class="sd">        Filename of the output file.</span>
+</span><span id="dump_to_json-268"><a href="#dump_to_json-268"><span class="linenos">268</span></a><span class="sd">    description : str</span>
+</span><span id="dump_to_json-269"><a href="#dump_to_json-269"><span class="linenos">269</span></a><span class="sd">        Optional string that describes the contents of the json file.</span>
+</span><span id="dump_to_json-270"><a href="#dump_to_json-270"><span class="linenos">270</span></a><span class="sd">    indent : int</span>
+</span><span id="dump_to_json-271"><a href="#dump_to_json-271"><span class="linenos">271</span></a><span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
+</span><span id="dump_to_json-272"><a href="#dump_to_json-272"><span class="linenos">272</span></a><span class="sd">        saves disk space.</span>
+</span><span id="dump_to_json-273"><a href="#dump_to_json-273"><span class="linenos">273</span></a><span class="sd">    gz : bool</span>
+</span><span id="dump_to_json-274"><a href="#dump_to_json-274"><span class="linenos">274</span></a><span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
+</span><span id="dump_to_json-275"><a href="#dump_to_json-275"><span class="linenos">275</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="dump_to_json-276"><a href="#dump_to_json-276"><span class="linenos">276</span></a>
+</span><span id="dump_to_json-277"><a href="#dump_to_json-277"><span class="linenos">277</span></a>    <span class="n">jsonstring</span> <span class="o">=</span> <span class="n">create_json_string</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">description</span><span class="p">,</span> <span class="n">indent</span><span class="p">)</span>
+</span><span id="dump_to_json-278"><a href="#dump_to_json-278"><span class="linenos">278</span></a>
+</span><span id="dump_to_json-279"><a href="#dump_to_json-279"><span class="linenos">279</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="dump_to_json-280"><a href="#dump_to_json-280"><span class="linenos">280</span></a>        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
+</span><span id="dump_to_json-281"><a href="#dump_to_json-281"><span class="linenos">281</span></a>
+</span><span id="dump_to_json-282"><a href="#dump_to_json-282"><span class="linenos">282</span></a>    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
+</span><span id="dump_to_json-283"><a href="#dump_to_json-283"><span class="linenos">283</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="dump_to_json-284"><a href="#dump_to_json-284"><span class="linenos">284</span></a>            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
+</span><span id="dump_to_json-285"><a href="#dump_to_json-285"><span class="linenos">285</span></a>
+</span><span id="dump_to_json-286"><a href="#dump_to_json-286"><span class="linenos">286</span></a>        <span class="n">fp</span> <span class="o">=</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span>
+</span><span id="dump_to_json-287"><a href="#dump_to_json-287"><span class="linenos">287</span></a>        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="o">.</span><span class="n">encode</span><span class="p">(</span><span class="s1">&#39;utf-8&#39;</span><span class="p">))</span>
+</span><span id="dump_to_json-288"><a href="#dump_to_json-288"><span class="linenos">288</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="dump_to_json-289"><a href="#dump_to_json-289"><span class="linenos">289</span></a>        <span class="n">fp</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;w&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span>
+</span><span id="dump_to_json-290"><a href="#dump_to_json-290"><span class="linenos">290</span></a>        <span class="n">fp</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
+</span><span id="dump_to_json-291"><a href="#dump_to_json-291"><span class="linenos">291</span></a>    <span class="n">fp</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span></pre></div>
 
         </details>
 
@@ -1202,25 +1202,25 @@ If True, the output is a gzipped json. If False, the output is a json file.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">import_json_string</span><span class="p">(</span><span class="n">json_string</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reconstruct a list of Obs or structures containing Obs from a json string.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-<span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    json_string : str</span>
-<span class="sd">        json string containing the data.</span>
-<span class="sd">    verbose : bool</span>
-<span class="sd">        Print additional information that was written to the file.</span>
-<span class="sd">    full_output : bool</span>
-<span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
-<span class="sd">        If False, only the data is returned.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="import_json_string-497"><a href="#import_json_string-497"><span class="linenos">497</span></a><span class="k">def</span> <span class="nf">import_json_string</span><span class="p">(</span><span class="n">json_string</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="import_json_string-498"><a href="#import_json_string-498"><span class="linenos">498</span></a>    <span class="sd">&quot;&quot;&quot;Reconstruct a list of Obs or structures containing Obs from a json string.</span>
+</span><span id="import_json_string-499"><a href="#import_json_string-499"><span class="linenos">499</span></a>
+</span><span id="import_json_string-500"><a href="#import_json_string-500"><span class="linenos">500</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="import_json_string-501"><a href="#import_json_string-501"><span class="linenos">501</span></a><span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
+</span><span id="import_json_string-502"><a href="#import_json_string-502"><span class="linenos">502</span></a>
+</span><span id="import_json_string-503"><a href="#import_json_string-503"><span class="linenos">503</span></a><span class="sd">    Parameters</span>
+</span><span id="import_json_string-504"><a href="#import_json_string-504"><span class="linenos">504</span></a><span class="sd">    ----------</span>
+</span><span id="import_json_string-505"><a href="#import_json_string-505"><span class="linenos">505</span></a><span class="sd">    json_string : str</span>
+</span><span id="import_json_string-506"><a href="#import_json_string-506"><span class="linenos">506</span></a><span class="sd">        json string containing the data.</span>
+</span><span id="import_json_string-507"><a href="#import_json_string-507"><span class="linenos">507</span></a><span class="sd">    verbose : bool</span>
+</span><span id="import_json_string-508"><a href="#import_json_string-508"><span class="linenos">508</span></a><span class="sd">        Print additional information that was written to the file.</span>
+</span><span id="import_json_string-509"><a href="#import_json_string-509"><span class="linenos">509</span></a><span class="sd">    full_output : bool</span>
+</span><span id="import_json_string-510"><a href="#import_json_string-510"><span class="linenos">510</span></a><span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
+</span><span id="import_json_string-511"><a href="#import_json_string-511"><span class="linenos">511</span></a><span class="sd">        If False, only the data is returned.</span>
+</span><span id="import_json_string-512"><a href="#import_json_string-512"><span class="linenos">512</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="import_json_string-513"><a href="#import_json_string-513"><span class="linenos">513</span></a>
+</span><span id="import_json_string-514"><a href="#import_json_string-514"><span class="linenos">514</span></a>    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">json_string</span><span class="p">),</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -1254,39 +1254,39 @@ If False, only the data is returned.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-<span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the input file.</span>
-<span class="sd">    verbose : bool</span>
-<span class="sd">        Print additional information that was written to the file.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
-<span class="sd">    full_output : bool</span>
-<span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
-<span class="sd">        If False, only the data is returned.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
-    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
-        <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
-            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
-            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
-
-    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="load_json-517"><a href="#load_json-517"><span class="linenos">517</span></a><span class="k">def</span> <span class="nf">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="load_json-518"><a href="#load_json-518"><span class="linenos">518</span></a>    <span class="sd">&quot;&quot;&quot;Import a list of Obs or structures containing Obs from a .json(.gz) file.</span>
+</span><span id="load_json-519"><a href="#load_json-519"><span class="linenos">519</span></a>
+</span><span id="load_json-520"><a href="#load_json-520"><span class="linenos">520</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="load_json-521"><a href="#load_json-521"><span class="linenos">521</span></a><span class="sd">    If the list contains only one element, it is unpacked from the list.</span>
+</span><span id="load_json-522"><a href="#load_json-522"><span class="linenos">522</span></a>
+</span><span id="load_json-523"><a href="#load_json-523"><span class="linenos">523</span></a><span class="sd">    Parameters</span>
+</span><span id="load_json-524"><a href="#load_json-524"><span class="linenos">524</span></a><span class="sd">    ----------</span>
+</span><span id="load_json-525"><a href="#load_json-525"><span class="linenos">525</span></a><span class="sd">    fname : str</span>
+</span><span id="load_json-526"><a href="#load_json-526"><span class="linenos">526</span></a><span class="sd">        Filename of the input file.</span>
+</span><span id="load_json-527"><a href="#load_json-527"><span class="linenos">527</span></a><span class="sd">    verbose : bool</span>
+</span><span id="load_json-528"><a href="#load_json-528"><span class="linenos">528</span></a><span class="sd">        Print additional information that was written to the file.</span>
+</span><span id="load_json-529"><a href="#load_json-529"><span class="linenos">529</span></a><span class="sd">    gz : bool</span>
+</span><span id="load_json-530"><a href="#load_json-530"><span class="linenos">530</span></a><span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
+</span><span id="load_json-531"><a href="#load_json-531"><span class="linenos">531</span></a><span class="sd">    full_output : bool</span>
+</span><span id="load_json-532"><a href="#load_json-532"><span class="linenos">532</span></a><span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
+</span><span id="load_json-533"><a href="#load_json-533"><span class="linenos">533</span></a><span class="sd">        If False, only the data is returned.</span>
+</span><span id="load_json-534"><a href="#load_json-534"><span class="linenos">534</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="load_json-535"><a href="#load_json-535"><span class="linenos">535</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.json&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="load_json-536"><a href="#load_json-536"><span class="linenos">536</span></a>        <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.json&#39;</span>
+</span><span id="load_json-537"><a href="#load_json-537"><span class="linenos">537</span></a>    <span class="k">if</span> <span class="n">gz</span><span class="p">:</span>
+</span><span id="load_json-538"><a href="#load_json-538"><span class="linenos">538</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="load_json-539"><a href="#load_json-539"><span class="linenos">539</span></a>            <span class="n">fname</span> <span class="o">+=</span> <span class="s1">&#39;.gz&#39;</span>
+</span><span id="load_json-540"><a href="#load_json-540"><span class="linenos">540</span></a>        <span class="k">with</span> <span class="n">gzip</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
+</span><span id="load_json-541"><a href="#load_json-541"><span class="linenos">541</span></a>            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
+</span><span id="load_json-542"><a href="#load_json-542"><span class="linenos">542</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="load_json-543"><a href="#load_json-543"><span class="linenos">543</span></a>        <span class="k">if</span> <span class="n">fname</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s1">&#39;.gz&#39;</span><span class="p">):</span>
+</span><span id="load_json-544"><a href="#load_json-544"><span class="linenos">544</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Trying to read from </span><span class="si">%s</span><span class="s2"> without unzipping!&quot;</span> <span class="o">%</span> <span class="n">fname</span><span class="p">,</span> <span class="ne">UserWarning</span><span class="p">)</span>
+</span><span id="load_json-545"><a href="#load_json-545"><span class="linenos">545</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s1">&#39;utf-8&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
+</span><span id="load_json-546"><a href="#load_json-546"><span class="linenos">546</span></a>            <span class="n">d</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">fin</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
+</span><span id="load_json-547"><a href="#load_json-547"><span class="linenos">547</span></a>
+</span><span id="load_json-548"><a href="#load_json-548"><span class="linenos">548</span></a>    <span class="k">return</span> <span class="n">_parse_json_dict</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">verbose</span><span class="p">,</span> <span class="n">full_output</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -1322,41 +1322,41 @@ If False, only the data is returned.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    od : dict</span>
-<span class="sd">        Dict of JSON valid structures and objects that will be exported.</span>
-<span class="sd">        At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
-<span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the output file.</span>
-<span class="sd">    description : str</span>
-<span class="sd">        Optional string that describes the contents of the json file.</span>
-<span class="sd">    indent : int</span>
-<span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
-<span class="sd">        saves disk space.</span>
-<span class="sd">    reps : str</span>
-<span class="sd">        Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;od has to be a dictionary. Did you want to use dump_to_json?&#39;</span><span class="p">)</span>
-
-    <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;This JSON file contains a python dictionary that has been parsed to a list of structures. &#39;</span>
-                  <span class="s1">&#39;OBSDICT contains the dictionary, where Obs or other structures have been replaced by &#39;</span>
-                  <span class="s1">&#39;&#39;</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;[0-9]+. The field description contains the additional description of this JSON file. &#39;</span>
-                  <span class="s1">&#39;This file may be parsed to a dict with the pyerrors routine load_json_dict.&#39;</span><span class="p">)</span>
-
-    <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;INFO&#39;</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">&#39;OBSDICT&#39;</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">&#39;description&#39;</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
-    <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
-
-    <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="dump_dict_to_json-631"><a href="#dump_dict_to_json-631"><span class="linenos">631</span></a><span class="k">def</span> <span class="nf">dump_dict_to_json</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="dump_dict_to_json-632"><a href="#dump_dict_to_json-632"><span class="linenos">632</span></a>    <span class="sd">&quot;&quot;&quot;Export a dict of Obs or structures containing Obs to a .json(.gz) file</span>
+</span><span id="dump_dict_to_json-633"><a href="#dump_dict_to_json-633"><span class="linenos">633</span></a>
+</span><span id="dump_dict_to_json-634"><a href="#dump_dict_to_json-634"><span class="linenos">634</span></a><span class="sd">    Parameters</span>
+</span><span id="dump_dict_to_json-635"><a href="#dump_dict_to_json-635"><span class="linenos">635</span></a><span class="sd">    ----------</span>
+</span><span id="dump_dict_to_json-636"><a href="#dump_dict_to_json-636"><span class="linenos">636</span></a><span class="sd">    od : dict</span>
+</span><span id="dump_dict_to_json-637"><a href="#dump_dict_to_json-637"><span class="linenos">637</span></a><span class="sd">        Dict of JSON valid structures and objects that will be exported.</span>
+</span><span id="dump_dict_to_json-638"><a href="#dump_dict_to_json-638"><span class="linenos">638</span></a><span class="sd">        At the moment, these objects can be either of: Obs, list, numpy.ndarray, Corr.</span>
+</span><span id="dump_dict_to_json-639"><a href="#dump_dict_to_json-639"><span class="linenos">639</span></a><span class="sd">        All Obs inside a structure have to be defined on the same set of configurations.</span>
+</span><span id="dump_dict_to_json-640"><a href="#dump_dict_to_json-640"><span class="linenos">640</span></a><span class="sd">    fname : str</span>
+</span><span id="dump_dict_to_json-641"><a href="#dump_dict_to_json-641"><span class="linenos">641</span></a><span class="sd">        Filename of the output file.</span>
+</span><span id="dump_dict_to_json-642"><a href="#dump_dict_to_json-642"><span class="linenos">642</span></a><span class="sd">    description : str</span>
+</span><span id="dump_dict_to_json-643"><a href="#dump_dict_to_json-643"><span class="linenos">643</span></a><span class="sd">        Optional string that describes the contents of the json file.</span>
+</span><span id="dump_dict_to_json-644"><a href="#dump_dict_to_json-644"><span class="linenos">644</span></a><span class="sd">    indent : int</span>
+</span><span id="dump_dict_to_json-645"><a href="#dump_dict_to_json-645"><span class="linenos">645</span></a><span class="sd">        Specify the indentation level of the json file. None or 0 is permissible and</span>
+</span><span id="dump_dict_to_json-646"><a href="#dump_dict_to_json-646"><span class="linenos">646</span></a><span class="sd">        saves disk space.</span>
+</span><span id="dump_dict_to_json-647"><a href="#dump_dict_to_json-647"><span class="linenos">647</span></a><span class="sd">    reps : str</span>
+</span><span id="dump_dict_to_json-648"><a href="#dump_dict_to_json-648"><span class="linenos">648</span></a><span class="sd">        Specify the structure of the placeholder in exported dict to be reps[0-9]+.</span>
+</span><span id="dump_dict_to_json-649"><a href="#dump_dict_to_json-649"><span class="linenos">649</span></a><span class="sd">    gz : bool</span>
+</span><span id="dump_dict_to_json-650"><a href="#dump_dict_to_json-650"><span class="linenos">650</span></a><span class="sd">        If True, the output is a gzipped json. If False, the output is a json file.</span>
+</span><span id="dump_dict_to_json-651"><a href="#dump_dict_to_json-651"><span class="linenos">651</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="dump_dict_to_json-652"><a href="#dump_dict_to_json-652"><span class="linenos">652</span></a>
+</span><span id="dump_dict_to_json-653"><a href="#dump_dict_to_json-653"><span class="linenos">653</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="nb">dict</span><span class="p">):</span>
+</span><span id="dump_dict_to_json-654"><a href="#dump_dict_to_json-654"><span class="linenos">654</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;od has to be a dictionary. Did you want to use dump_to_json?&#39;</span><span class="p">)</span>
+</span><span id="dump_dict_to_json-655"><a href="#dump_dict_to_json-655"><span class="linenos">655</span></a>
+</span><span id="dump_dict_to_json-656"><a href="#dump_dict_to_json-656"><span class="linenos">656</span></a>    <span class="n">infostring</span> <span class="o">=</span> <span class="p">(</span><span class="s1">&#39;This JSON file contains a python dictionary that has been parsed to a list of structures. &#39;</span>
+</span><span id="dump_dict_to_json-657"><a href="#dump_dict_to_json-657"><span class="linenos">657</span></a>                  <span class="s1">&#39;OBSDICT contains the dictionary, where Obs or other structures have been replaced by &#39;</span>
+</span><span id="dump_dict_to_json-658"><a href="#dump_dict_to_json-658"><span class="linenos">658</span></a>                  <span class="s1">&#39;&#39;</span> <span class="o">+</span> <span class="n">reps</span> <span class="o">+</span> <span class="s1">&#39;[0-9]+. The field description contains the additional description of this JSON file. &#39;</span>
+</span><span id="dump_dict_to_json-659"><a href="#dump_dict_to_json-659"><span class="linenos">659</span></a>                  <span class="s1">&#39;This file may be parsed to a dict with the pyerrors routine load_json_dict.&#39;</span><span class="p">)</span>
+</span><span id="dump_dict_to_json-660"><a href="#dump_dict_to_json-660"><span class="linenos">660</span></a>
+</span><span id="dump_dict_to_json-661"><a href="#dump_dict_to_json-661"><span class="linenos">661</span></a>    <span class="n">desc_dict</span> <span class="o">=</span> <span class="p">{</span><span class="s1">&#39;INFO&#39;</span><span class="p">:</span> <span class="n">infostring</span><span class="p">,</span> <span class="s1">&#39;OBSDICT&#39;</span><span class="p">:</span> <span class="p">{},</span> <span class="s1">&#39;description&#39;</span><span class="p">:</span> <span class="n">description</span><span class="p">}</span>
+</span><span id="dump_dict_to_json-662"><a href="#dump_dict_to_json-662"><span class="linenos">662</span></a>    <span class="n">ol</span><span class="p">,</span> <span class="n">desc_dict</span><span class="p">[</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">_ol_from_dict</span><span class="p">(</span><span class="n">od</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
+</span><span id="dump_dict_to_json-663"><a href="#dump_dict_to_json-663"><span class="linenos">663</span></a>
+</span><span id="dump_dict_to_json-664"><a href="#dump_dict_to_json-664"><span class="linenos">664</span></a>    <span class="n">dump_to_json</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">fname</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">desc_dict</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="n">indent</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -1395,38 +1395,38 @@ If True, the output is a gzipped json. If False, the output is a json file.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
-
-<span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    fname : str</span>
-<span class="sd">        Filename of the input file.</span>
-<span class="sd">    verbose : bool</span>
-<span class="sd">        Print additional information that was written to the file.</span>
-<span class="sd">    gz : bool</span>
-<span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
-<span class="sd">    full_output : bool</span>
-<span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
-<span class="sd">        If False, only the data is returned.</span>
-<span class="sd">    reps : str</span>
-<span class="sd">        Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;description&#39;</span><span class="p">]</span>
-    <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span>
-    <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span>
-    <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
-        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
-        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
-        <span class="k">return</span> <span class="n">indata</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">od</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="load_json_dict-730"><a href="#load_json_dict-730"><span class="linenos">730</span></a><span class="k">def</span> <span class="nf">load_json_dict</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="s1">&#39;DICTOBS&#39;</span><span class="p">):</span>
+</span><span id="load_json_dict-731"><a href="#load_json_dict-731"><span class="linenos">731</span></a>    <span class="sd">&quot;&quot;&quot;Import a dict of Obs or structures containing Obs from a .json(.gz) file.</span>
+</span><span id="load_json_dict-732"><a href="#load_json_dict-732"><span class="linenos">732</span></a>
+</span><span id="load_json_dict-733"><a href="#load_json_dict-733"><span class="linenos">733</span></a><span class="sd">    The following structures are supported: Obs, list, numpy.ndarray, Corr</span>
+</span><span id="load_json_dict-734"><a href="#load_json_dict-734"><span class="linenos">734</span></a>
+</span><span id="load_json_dict-735"><a href="#load_json_dict-735"><span class="linenos">735</span></a><span class="sd">    Parameters</span>
+</span><span id="load_json_dict-736"><a href="#load_json_dict-736"><span class="linenos">736</span></a><span class="sd">    ----------</span>
+</span><span id="load_json_dict-737"><a href="#load_json_dict-737"><span class="linenos">737</span></a><span class="sd">    fname : str</span>
+</span><span id="load_json_dict-738"><a href="#load_json_dict-738"><span class="linenos">738</span></a><span class="sd">        Filename of the input file.</span>
+</span><span id="load_json_dict-739"><a href="#load_json_dict-739"><span class="linenos">739</span></a><span class="sd">    verbose : bool</span>
+</span><span id="load_json_dict-740"><a href="#load_json_dict-740"><span class="linenos">740</span></a><span class="sd">        Print additional information that was written to the file.</span>
+</span><span id="load_json_dict-741"><a href="#load_json_dict-741"><span class="linenos">741</span></a><span class="sd">    gz : bool</span>
+</span><span id="load_json_dict-742"><a href="#load_json_dict-742"><span class="linenos">742</span></a><span class="sd">        If True, assumes that data is gzipped. If False, assumes JSON file.</span>
+</span><span id="load_json_dict-743"><a href="#load_json_dict-743"><span class="linenos">743</span></a><span class="sd">    full_output : bool</span>
+</span><span id="load_json_dict-744"><a href="#load_json_dict-744"><span class="linenos">744</span></a><span class="sd">        If True, a dict containing auxiliary information and the data is returned.</span>
+</span><span id="load_json_dict-745"><a href="#load_json_dict-745"><span class="linenos">745</span></a><span class="sd">        If False, only the data is returned.</span>
+</span><span id="load_json_dict-746"><a href="#load_json_dict-746"><span class="linenos">746</span></a><span class="sd">    reps : str</span>
+</span><span id="load_json_dict-747"><a href="#load_json_dict-747"><span class="linenos">747</span></a><span class="sd">        Specify the structure of the placeholder in imported dict to be reps[0-9]+.</span>
+</span><span id="load_json_dict-748"><a href="#load_json_dict-748"><span class="linenos">748</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="load_json_dict-749"><a href="#load_json_dict-749"><span class="linenos">749</span></a>    <span class="n">indata</span> <span class="o">=</span> <span class="n">load_json</span><span class="p">(</span><span class="n">fname</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="n">verbose</span><span class="p">,</span> <span class="n">gz</span><span class="o">=</span><span class="n">gz</span><span class="p">,</span> <span class="n">full_output</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="load_json_dict-750"><a href="#load_json_dict-750"><span class="linenos">750</span></a>    <span class="n">description</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;description&#39;</span><span class="p">]</span>
+</span><span id="load_json_dict-751"><a href="#load_json_dict-751"><span class="linenos">751</span></a>    <span class="n">indict</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">][</span><span class="s1">&#39;OBSDICT&#39;</span><span class="p">]</span>
+</span><span id="load_json_dict-752"><a href="#load_json_dict-752"><span class="linenos">752</span></a>    <span class="n">ol</span> <span class="o">=</span> <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span>
+</span><span id="load_json_dict-753"><a href="#load_json_dict-753"><span class="linenos">753</span></a>    <span class="n">od</span> <span class="o">=</span> <span class="n">_od_from_list_and_dict</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">indict</span><span class="p">,</span> <span class="n">reps</span><span class="o">=</span><span class="n">reps</span><span class="p">)</span>
+</span><span id="load_json_dict-754"><a href="#load_json_dict-754"><span class="linenos">754</span></a>
+</span><span id="load_json_dict-755"><a href="#load_json_dict-755"><span class="linenos">755</span></a>    <span class="k">if</span> <span class="n">full_output</span><span class="p">:</span>
+</span><span id="load_json_dict-756"><a href="#load_json_dict-756"><span class="linenos">756</span></a>        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;description&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">description</span>
+</span><span id="load_json_dict-757"><a href="#load_json_dict-757"><span class="linenos">757</span></a>        <span class="n">indata</span><span class="p">[</span><span class="s1">&#39;obsdata&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">od</span>
+</span><span id="load_json_dict-758"><a href="#load_json_dict-758"><span class="linenos">758</span></a>        <span class="k">return</span> <span class="n">indata</span>
+</span><span id="load_json_dict-759"><a href="#load_json_dict-759"><span class="linenos">759</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="load_json_dict-760"><a href="#load_json_dict-760"><span class="linenos">760</span></a>        <span class="k">return</span> <span class="n">od</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input/misc.html b/docs/pyerrors/input/misc.html
index 49d76858..ecf155c3 100644
--- a/docs/pyerrors/input/misc.html
+++ b/docs/pyerrors/input/misc.html
@@ -3,14 +3,14 @@
 <head>
     <meta charset="utf-8">
     <meta name="viewport" content="width=device-width, initial-scale=1">
-    <meta name="generator" content="pdoc 11.0.0"/>
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     <title>pyerrors.input.misc API documentation</title>
 
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@@ -54,7 +54,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
                 alt="pdoc logo"
                 src="data:image/svg+xml,%3Csvg%20xmlns%3D%22http%3A//www.w3.org/2000/svg%22%20role%3D%22img%22%20aria-label%3D%22pdoc%20logo%22%20width%3D%22300%22%20height%3D%22150%22%20viewBox%3D%22-1%200%2060%2030%22%3E%3Ctitle%3Epdoc%3C/title%3E%3Cpath%20d%3D%22M29.621%2021.293c-.011-.273-.214-.475-.511-.481a.5.5%200%200%200-.489.503l-.044%201.393c-.097.551-.695%201.215-1.566%201.704-.577.428-1.306.486-2.193.182-1.426-.617-2.467-1.654-3.304-2.487l-.173-.172a3.43%203.43%200%200%200-.365-.306.49.49%200%200%200-.286-.196c-1.718-1.06-4.931-1.47-7.353.191l-.219.15c-1.707%201.187-3.413%202.131-4.328%201.03-.02-.027-.49-.685-.141-1.763.233-.721.546-2.408.772-4.076.042-.09.067-.187.046-.288.166-1.347.277-2.625.241-3.351%201.378-1.008%202.271-2.586%202.271-4.362%200-.976-.272-1.935-.788-2.774-.057-.094-.122-.18-.184-.268.033-.167.052-.339.052-.516%200-1.477-1.202-2.679-2.679-2.679-.791%200-1.496.352-1.987.9a6.3%206.3%200%200%200-1.001.029c-.492-.564-1.207-.929-2.012-.929-1.477%200-2.679%201.202-2.679%202.679A2.65%202.65%200%200%200%20.97%206.554c-.383.747-.595%201.572-.595%202.41%200%202.311%201.507%204.29%203.635%205.107-.037.699-.147%202.27-.423%203.294l-.137.461c-.622%202.042-2.515%208.257%201.727%2010.643%201.614.908%203.06%201.248%204.317%201.248%202.665%200%204.492-1.524%205.322-2.401%201.476-1.559%202.886-1.854%206.491.82%201.877%201.393%203.514%201.753%204.861%201.068%202.223-1.713%202.811-3.867%203.399-6.374.077-.846.056-1.469.054-1.537zm-4.835%204.313c-.054.305-.156.586-.242.629-.034-.007-.131-.022-.307-.157-.145-.111-.314-.478-.456-.908.221.121.432.25.675.355.115.039.219.051.33.081zm-2.251-1.238c-.05.33-.158.648-.252.694-.022.001-.125-.018-.307-.157-.217-.166-.488-.906-.639-1.573.358.344.754.693%201.198%201.036zm-3.887-2.337c-.006-.116-.018-.231-.041-.342.635.145%201.189.368%201.599.625.097.231.166.481.174.642-.03.049-.055.101-.067.158-.046.013-.128.026-.298.004-.278-.037-.901-.57-1.367-1.087zm-1.127-.497c.116.306.176.625.12.71-.019.014-.117.045-.345.016-.206-.027-.604-.332-.986-.695.41-.051.816-.056%201.211-.031zm-4.535%201.535c.209.22.379.47.358.598-.006.041-.088.138-.351.234-.144.055-.539-.063-.979-.259a11.66%2011.66%200%200%200%20.972-.573zm.983-.664c.359-.237.738-.418%201.126-.554.25.237.479.548.457.694-.006.042-.087.138-.351.235-.174.064-.694-.105-1.232-.375zm-3.381%201.794c-.022.145-.061.29-.149.401-.133.166-.358.248-.69.251h-.002c-.133%200-.306-.26-.45-.621.417.091.854.07%201.291-.031zm-2.066-8.077a4.78%204.78%200%200%201-.775-.584c.172-.115.505-.254.88-.378l-.105.962zm-.331%202.302a10.32%2010.32%200%200%201-.828-.502c.202-.143.576-.328.984-.49l-.156.992zm-.45%202.157l-.701-.403c.214-.115.536-.249.891-.376a11.57%2011.57%200%200%201-.19.779zm-.181%201.716c.064.398.194.702.298.893-.194-.051-.435-.162-.736-.398.061-.119.224-.3.438-.495zM8.87%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zm-.735-.389a1.15%201.15%200%200%200-.314.783%201.16%201.16%200%200%200%201.162%201.162c.457%200%20.842-.27%201.032-.653.026.117.042.238.042.362a1.68%201.68%200%200%201-1.679%201.679%201.68%201.68%200%200%201-1.679-1.679c0-.843.626-1.535%201.436-1.654zM5.059%205.406A1.68%201.68%200%200%201%203.38%207.085a1.68%201.68%200%200%201-1.679-1.679c0-.037.009-.072.011-.109.21.3.541.508.935.508a1.16%201.16%200%200%200%201.162-1.162%201.14%201.14%200%200%200-.474-.912c.015%200%20.03-.005.045-.005.926.001%201.679.754%201.679%201.68zM3.198%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zM1.375%208.964c0-.52.103-1.035.288-1.52.466.394%201.06.64%201.717.64%201.144%200%202.116-.725%202.499-1.738.383%201.012%201.355%201.738%202.499%201.738.867%200%201.631-.421%202.121-1.062.307.605.478%201.267.478%201.942%200%202.486-2.153%204.51-4.801%204.51s-4.801-2.023-4.801-4.51zm24.342%2019.349c-.985.498-2.267.168-3.813-.979-3.073-2.281-5.453-3.199-7.813-.705-1.315%201.391-4.163%203.365-8.423.97-3.174-1.786-2.239-6.266-1.261-9.479l.146-.492c.276-1.02.395-2.457.444-3.268a6.11%206.11%200%200%200%201.18.115%206.01%206.01%200%200%200%202.536-.562l-.006.175c-.802.215-1.848.612-2.021%201.25-.079.295.021.601.274.837.219.203.415.364.598.501-.667.304-1.243.698-1.311%201.179-.02.144-.022.507.393.787.213.144.395.26.564.365-1.285.521-1.361.96-1.381%201.126-.018.142-.011.496.427.746l.854.489c-.473.389-.971.914-.999%201.429-.018.278.095.532.316.713.675.556%201.231.721%201.653.721.059%200%20.104-.014.158-.02.207.707.641%201.64%201.513%201.64h.013c.8-.008%201.236-.345%201.462-.626.173-.216.268-.457.325-.692.424.195.93.374%201.372.374.151%200%20.294-.021.423-.068.732-.27.944-.704.993-1.021.009-.061.003-.119.002-.179.266.086.538.147.789.147.15%200%20.294-.021.423-.069.542-.2.797-.489.914-.754.237.147.478.258.704.288.106.014.205.021.296.021.356%200%20.595-.101.767-.229.438.435%201.094.992%201.656%201.067.106.014.205.021.296.021a1.56%201.56%200%200%200%20.323-.035c.17.575.453%201.289.866%201.605.358.273.665.362.914.362a.99.99%200%200%200%20.421-.093%201.03%201.03%200%200%200%20.245-.164c.168.42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@@ -69,135 +69,135 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">fnmatch</span>
-<span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">import</span> <span class="nn">struct</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
-<span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
-
-
-<span class="k">def</span> <span class="nf">read_pbp</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read pbp format from given folder structure. Returns a list of length nrw</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">extract_nfct</span> <span class="o">=</span> <span class="mi">1</span>
-
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-        <span class="k">break</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-
-    <span class="c1"># Exclude files with different names</span>
-    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.dat&#39;</span><span class="p">):</span>
-            <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="c1"># Adjust Configuration numbering to python index</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="o">-</span> <span class="mi">1</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;Read &lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
-
-    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="nb">print</span><span class="p">()</span>
-
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
-        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-            <span class="c1"># This block is necessary for openQCD1.6 ms1 files</span>
-            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="n">extract_nfct</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nfct: &#39;</span><span class="p">,</span> <span class="n">nfct</span><span class="p">)</span>  <span class="c1"># Hasenbusch factor, 1 for rat reweighting</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
-
-            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-
-            <span class="c1"># body</span>
-            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
-                    <span class="k">break</span>
-                <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                    <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
-                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
-                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
-                        <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
-                        <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                            <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)),</span> <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
-                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
-                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
-                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span>
-
-    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-        <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="sa">r</span><span class="s1">&#39;&lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">))</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">os</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">fnmatch</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">import</span> <span class="nn">re</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="kn">import</span> <span class="nn">struct</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="k">def</span> <span class="nf">read_pbp</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a>    <span class="sd">&quot;&quot;&quot;Read pbp format from given folder structure. Returns a list of length nrw</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="sd">    Parameters</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="sd">    ----------</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="sd">    r_start : list</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd">        list which contains the first config to be read for each replicum</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd">    r_stop : list</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd">        list which contains the last config to be read for each replicum</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a>    <span class="n">extract_nfct</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a>    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a>        <span class="k">break</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a>    <span class="c1"># Exclude files with different names</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a>    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.dat&#39;</span><span class="p">):</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a>            <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a>        <span class="c1"># Adjust Configuration numbering to python index</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="o">-</span> <span class="mi">1</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>    <span class="nb">print</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;Read &lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>        <span class="nb">print</span><span class="p">()</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a>                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a>                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a>                <span class="k">if</span> <span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>            <span class="c1"># This block is necessary for openQCD1.6 ms1 files</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>            <span class="k">if</span> <span class="n">extract_nfct</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nfct: &#39;</span><span class="p">,</span> <span class="n">nfct</span><span class="p">)</span>  <span class="c1"># Hasenbusch factor, 1 for rat reweighting</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>            <span class="c1"># body</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>                    <span class="k">break</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>                <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>                    <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>                    <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a>                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>                        <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>                        <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>                            <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)),</span> <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>    <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>        <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>        <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>        <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="sa">r</span><span class="s1">&#39;&lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">))</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -212,127 +212,127 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_pbp</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read pbp format from given folder structure. Returns a list of length nrw</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">extract_nfct</span> <span class="o">=</span> <span class="mi">1</span>
-
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-        <span class="k">break</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-
-    <span class="c1"># Exclude files with different names</span>
-    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.dat&#39;</span><span class="p">):</span>
-            <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="c1"># Adjust Configuration numbering to python index</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="o">-</span> <span class="mi">1</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;Read &lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
-
-    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="nb">print</span><span class="p">()</span>
-
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
-        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-            <span class="c1"># This block is necessary for openQCD1.6 ms1 files</span>
-            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="n">extract_nfct</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nfct: &#39;</span><span class="p">,</span> <span class="n">nfct</span><span class="p">)</span>  <span class="c1"># Hasenbusch factor, 1 for rat reweighting</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
-
-            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-
-            <span class="c1"># body</span>
-            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
-                    <span class="k">break</span>
-                <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                    <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
-                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
-                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
-                        <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
-                        <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                            <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)),</span> <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
-                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
-                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
-                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span>
-
-    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-        <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="sa">r</span><span class="s1">&#39;&lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">))</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_pbp-9"><a href="#read_pbp-9"><span class="linenos">  9</span></a><span class="k">def</span> <span class="nf">read_pbp</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_pbp-10"><a href="#read_pbp-10"><span class="linenos"> 10</span></a>    <span class="sd">&quot;&quot;&quot;Read pbp format from given folder structure. Returns a list of length nrw</span>
+</span><span id="read_pbp-11"><a href="#read_pbp-11"><span class="linenos"> 11</span></a>
+</span><span id="read_pbp-12"><a href="#read_pbp-12"><span class="linenos"> 12</span></a><span class="sd">    Parameters</span>
+</span><span id="read_pbp-13"><a href="#read_pbp-13"><span class="linenos"> 13</span></a><span class="sd">    ----------</span>
+</span><span id="read_pbp-14"><a href="#read_pbp-14"><span class="linenos"> 14</span></a><span class="sd">    r_start : list</span>
+</span><span id="read_pbp-15"><a href="#read_pbp-15"><span class="linenos"> 15</span></a><span class="sd">        list which contains the first config to be read for each replicum</span>
+</span><span id="read_pbp-16"><a href="#read_pbp-16"><span class="linenos"> 16</span></a><span class="sd">    r_stop : list</span>
+</span><span id="read_pbp-17"><a href="#read_pbp-17"><span class="linenos"> 17</span></a><span class="sd">        list which contains the last config to be read for each replicum</span>
+</span><span id="read_pbp-18"><a href="#read_pbp-18"><span class="linenos"> 18</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_pbp-19"><a href="#read_pbp-19"><span class="linenos"> 19</span></a>
+</span><span id="read_pbp-20"><a href="#read_pbp-20"><span class="linenos"> 20</span></a>    <span class="n">extract_nfct</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_pbp-21"><a href="#read_pbp-21"><span class="linenos"> 21</span></a>
+</span><span id="read_pbp-22"><a href="#read_pbp-22"><span class="linenos"> 22</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_pbp-23"><a href="#read_pbp-23"><span class="linenos"> 23</span></a>    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="read_pbp-24"><a href="#read_pbp-24"><span class="linenos"> 24</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="read_pbp-25"><a href="#read_pbp-25"><span class="linenos"> 25</span></a>        <span class="k">break</span>
+</span><span id="read_pbp-26"><a href="#read_pbp-26"><span class="linenos"> 26</span></a>
+</span><span id="read_pbp-27"><a href="#read_pbp-27"><span class="linenos"> 27</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_pbp-28"><a href="#read_pbp-28"><span class="linenos"> 28</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-29"><a href="#read_pbp-29"><span class="linenos"> 29</span></a>
+</span><span id="read_pbp-30"><a href="#read_pbp-30"><span class="linenos"> 30</span></a>    <span class="c1"># Exclude files with different names</span>
+</span><span id="read_pbp-31"><a href="#read_pbp-31"><span class="linenos"> 31</span></a>    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_pbp-32"><a href="#read_pbp-32"><span class="linenos"> 32</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.dat&#39;</span><span class="p">):</span>
+</span><span id="read_pbp-33"><a href="#read_pbp-33"><span class="linenos"> 33</span></a>            <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="read_pbp-34"><a href="#read_pbp-34"><span class="linenos"> 34</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_pbp-35"><a href="#read_pbp-35"><span class="linenos"> 35</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="read_pbp-36"><a href="#read_pbp-36"><span class="linenos"> 36</span></a>    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="read_pbp-37"><a href="#read_pbp-37"><span class="linenos"> 37</span></a>
+</span><span id="read_pbp-38"><a href="#read_pbp-38"><span class="linenos"> 38</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_pbp-39"><a href="#read_pbp-39"><span class="linenos"> 39</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-40"><a href="#read_pbp-40"><span class="linenos"> 40</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="read_pbp-41"><a href="#read_pbp-41"><span class="linenos"> 41</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-42"><a href="#read_pbp-42"><span class="linenos"> 42</span></a>        <span class="c1"># Adjust Configuration numbering to python index</span>
+</span><span id="read_pbp-43"><a href="#read_pbp-43"><span class="linenos"> 43</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="o">-</span> <span class="mi">1</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="read_pbp-44"><a href="#read_pbp-44"><span class="linenos"> 44</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_pbp-45"><a href="#read_pbp-45"><span class="linenos"> 45</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="read_pbp-46"><a href="#read_pbp-46"><span class="linenos"> 46</span></a>
+</span><span id="read_pbp-47"><a href="#read_pbp-47"><span class="linenos"> 47</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_pbp-48"><a href="#read_pbp-48"><span class="linenos"> 48</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-49"><a href="#read_pbp-49"><span class="linenos"> 49</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="read_pbp-50"><a href="#read_pbp-50"><span class="linenos"> 50</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-51"><a href="#read_pbp-51"><span class="linenos"> 51</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_pbp-52"><a href="#read_pbp-52"><span class="linenos"> 52</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="read_pbp-53"><a href="#read_pbp-53"><span class="linenos"> 53</span></a>
+</span><span id="read_pbp-54"><a href="#read_pbp-54"><span class="linenos"> 54</span></a>    <span class="nb">print</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;Read &lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-55"><a href="#read_pbp-55"><span class="linenos"> 55</span></a>
+</span><span id="read_pbp-56"><a href="#read_pbp-56"><span class="linenos"> 56</span></a>    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_pbp-57"><a href="#read_pbp-57"><span class="linenos"> 57</span></a>    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_pbp-58"><a href="#read_pbp-58"><span class="linenos"> 58</span></a>        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_pbp-59"><a href="#read_pbp-59"><span class="linenos"> 59</span></a>        <span class="nb">print</span><span class="p">()</span>
+</span><span id="read_pbp-60"><a href="#read_pbp-60"><span class="linenos"> 60</span></a>
+</span><span id="read_pbp-61"><a href="#read_pbp-61"><span class="linenos"> 61</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_pbp-62"><a href="#read_pbp-62"><span class="linenos"> 62</span></a>
+</span><span id="read_pbp-63"><a href="#read_pbp-63"><span class="linenos"> 63</span></a>    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
+</span><span id="read_pbp-64"><a href="#read_pbp-64"><span class="linenos"> 64</span></a>        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_pbp-65"><a href="#read_pbp-65"><span class="linenos"> 65</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="read_pbp-66"><a href="#read_pbp-66"><span class="linenos"> 66</span></a>
+</span><span id="read_pbp-67"><a href="#read_pbp-67"><span class="linenos"> 67</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
+</span><span id="read_pbp-68"><a href="#read_pbp-68"><span class="linenos"> 68</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_pbp-69"><a href="#read_pbp-69"><span class="linenos"> 69</span></a>                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_pbp-70"><a href="#read_pbp-70"><span class="linenos"> 70</span></a>                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-71"><a href="#read_pbp-71"><span class="linenos"> 71</span></a>                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_pbp-72"><a href="#read_pbp-72"><span class="linenos"> 72</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_pbp-73"><a href="#read_pbp-73"><span class="linenos"> 73</span></a>                <span class="k">if</span> <span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
+</span><span id="read_pbp-74"><a href="#read_pbp-74"><span class="linenos"> 74</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
+</span><span id="read_pbp-75"><a href="#read_pbp-75"><span class="linenos"> 75</span></a>
+</span><span id="read_pbp-76"><a href="#read_pbp-76"><span class="linenos"> 76</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-77"><a href="#read_pbp-77"><span class="linenos"> 77</span></a>                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_pbp-78"><a href="#read_pbp-78"><span class="linenos"> 78</span></a>
+</span><span id="read_pbp-79"><a href="#read_pbp-79"><span class="linenos"> 79</span></a>            <span class="c1"># This block is necessary for openQCD1.6 ms1 files</span>
+</span><span id="read_pbp-80"><a href="#read_pbp-80"><span class="linenos"> 80</span></a>            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_pbp-81"><a href="#read_pbp-81"><span class="linenos"> 81</span></a>            <span class="k">if</span> <span class="n">extract_nfct</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_pbp-82"><a href="#read_pbp-82"><span class="linenos"> 82</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-83"><a href="#read_pbp-83"><span class="linenos"> 83</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_pbp-84"><a href="#read_pbp-84"><span class="linenos"> 84</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="read_pbp-85"><a href="#read_pbp-85"><span class="linenos"> 85</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;nfct: &#39;</span><span class="p">,</span> <span class="n">nfct</span><span class="p">)</span>  <span class="c1"># Hasenbusch factor, 1 for rat reweighting</span>
+</span><span id="read_pbp-86"><a href="#read_pbp-86"><span class="linenos"> 86</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_pbp-87"><a href="#read_pbp-87"><span class="linenos"> 87</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-88"><a href="#read_pbp-88"><span class="linenos"> 88</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="read_pbp-89"><a href="#read_pbp-89"><span class="linenos"> 89</span></a>
+</span><span id="read_pbp-90"><a href="#read_pbp-90"><span class="linenos"> 90</span></a>            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_pbp-91"><a href="#read_pbp-91"><span class="linenos"> 91</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-92"><a href="#read_pbp-92"><span class="linenos"> 92</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_pbp-93"><a href="#read_pbp-93"><span class="linenos"> 93</span></a>                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="read_pbp-94"><a href="#read_pbp-94"><span class="linenos"> 94</span></a>
+</span><span id="read_pbp-95"><a href="#read_pbp-95"><span class="linenos"> 95</span></a>            <span class="c1"># body</span>
+</span><span id="read_pbp-96"><a href="#read_pbp-96"><span class="linenos"> 96</span></a>            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_pbp-97"><a href="#read_pbp-97"><span class="linenos"> 97</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_pbp-98"><a href="#read_pbp-98"><span class="linenos"> 98</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="read_pbp-99"><a href="#read_pbp-99"><span class="linenos"> 99</span></a>                    <span class="k">break</span>
+</span><span id="read_pbp-100"><a href="#read_pbp-100"><span class="linenos">100</span></a>                <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="read_pbp-101"><a href="#read_pbp-101"><span class="linenos">101</span></a>                    <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_pbp-102"><a href="#read_pbp-102"><span class="linenos">102</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-103"><a href="#read_pbp-103"><span class="linenos">103</span></a>                    <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="read_pbp-104"><a href="#read_pbp-104"><span class="linenos">104</span></a>                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
+</span><span id="read_pbp-105"><a href="#read_pbp-105"><span class="linenos">105</span></a>                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="read_pbp-106"><a href="#read_pbp-106"><span class="linenos">106</span></a>                        <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="read_pbp-107"><a href="#read_pbp-107"><span class="linenos">107</span></a>                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_pbp-108"><a href="#read_pbp-108"><span class="linenos">108</span></a>                        <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
+</span><span id="read_pbp-109"><a href="#read_pbp-109"><span class="linenos">109</span></a>                        <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="read_pbp-110"><a href="#read_pbp-110"><span class="linenos">110</span></a>                            <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)),</span> <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
+</span><span id="read_pbp-111"><a href="#read_pbp-111"><span class="linenos">111</span></a>                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))</span>
+</span><span id="read_pbp-112"><a href="#read_pbp-112"><span class="linenos">112</span></a>                            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="read_pbp-113"><a href="#read_pbp-113"><span class="linenos">113</span></a>                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="read_pbp-114"><a href="#read_pbp-114"><span class="linenos">114</span></a>
+</span><span id="read_pbp-115"><a href="#read_pbp-115"><span class="linenos">115</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-116"><a href="#read_pbp-116"><span class="linenos">116</span></a>                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span>
+</span><span id="read_pbp-117"><a href="#read_pbp-117"><span class="linenos">117</span></a>
+</span><span id="read_pbp-118"><a href="#read_pbp-118"><span class="linenos">118</span></a>    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_pbp-119"><a href="#read_pbp-119"><span class="linenos">119</span></a>    <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_pbp-120"><a href="#read_pbp-120"><span class="linenos">120</span></a>        <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_pbp-121"><a href="#read_pbp-121"><span class="linenos">121</span></a>        <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-122"><a href="#read_pbp-122"><span class="linenos">122</span></a>        <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="read_pbp-123"><a href="#read_pbp-123"><span class="linenos">123</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="sa">r</span><span class="s1">&#39;&lt;bar</span><span class="si">{psi}</span><span class="s1">\psi&gt; with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
+</span><span id="read_pbp-124"><a href="#read_pbp-124"><span class="linenos">124</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_pbp-125"><a href="#read_pbp-125"><span class="linenos">125</span></a>    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_pbp-126"><a href="#read_pbp-126"><span class="linenos">126</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">))</span>
+</span><span id="read_pbp-127"><a href="#read_pbp-127"><span class="linenos">127</span></a>
+</span><span id="read_pbp-128"><a href="#read_pbp-128"><span class="linenos">128</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input/openQCD.html b/docs/pyerrors/input/openQCD.html
index 654e20e5..e41bf6fd 100644
--- a/docs/pyerrors/input/openQCD.html
+++ b/docs/pyerrors/input/openQCD.html
@@ -3,14 +3,14 @@
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@@ -66,7 +66,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
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@@ -81,860 +81,860 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">fnmatch</span>
-<span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">import</span> <span class="nn">struct</span>
-<span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">gridspec</span>
-<span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
-<span class="kn">from</span> <span class="nn">..fits</span> <span class="kn">import</span> <span class="n">fit_lin</span>
-
-
-<span class="k">def</span> <span class="nf">read_rwms</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s1">&#39;2.0&#39;</span><span class="p">,</span> <span class="n">names</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read rwms format from given folder structure. Returns a list of length nrw</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path that contains the data files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        all files in path that start with prefix are considered as input files.</span>
-<span class="sd">        May be used together postfix to consider only special file endings.</span>
-<span class="sd">        Prefix is ignored, if the keyword &#39;files&#39; is used.</span>
-<span class="sd">    version : str</span>
-<span class="sd">        version of openQCD, default 2.0</span>
-<span class="sd">    names : list</span>
-<span class="sd">        list of names that is assigned to the data according according</span>
-<span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum</span>
-<span class="sd">    r_step : int</span>
-<span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
-<span class="sd">        If not given, r_step=1 is assumed.</span>
-<span class="sd">    postfix : str</span>
-<span class="sd">        postfix of the file to read, e.g. &#39;.ms1&#39; for openQCD-files</span>
-<span class="sd">    files : list</span>
-<span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
-<span class="sd">        files performed if given.</span>
-<span class="sd">    print_err : bool</span>
-<span class="sd">        Print additional information that is useful for debugging.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">known_oqcd_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;1.4&#39;</span><span class="p">,</span> <span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">version</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown openQCD version defined!&#39;</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Working with openQCD version &quot;</span> <span class="o">+</span> <span class="n">version</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;postfix&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;postfix&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-        <span class="k">break</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span> <span class="o">+</span> <span class="n">postfix</span> <span class="o">+</span> <span class="s1">&#39;.dat&#39;</span><span class="p">):</span>
-                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read reweighting factors from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span>
-          <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">names</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span>
-            <span class="n">suffixes</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.dat&quot;</span><span class="p">,</span> <span class="s2">&quot;.rwms&quot;</span><span class="p">,</span> <span class="s2">&quot;.ms1&quot;</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">suffix</span> <span class="ow">in</span> <span class="n">suffixes</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="n">suffix</span><span class="p">):</span>
-                    <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">suffix</span><span class="p">)]</span>
-            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
-
-    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="nb">print</span><span class="p">()</span>
-
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
-        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
-                    <span class="n">nrw</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nrw</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="p">((</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">and</span> <span class="p">(</span><span class="ow">not</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">))</span> <span class="ow">or</span> <span class="p">(</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">)):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of reweighting factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-            <span class="c1"># This block is necessary for openQCD1.6 and openQCD2.0 ms1 files</span>
-            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
-
-            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">))[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;something is wrong!&#39;</span><span class="p">)</span>
-
-            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
-                    <span class="k">break</span>
-                <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">config_no</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="k">if</span><span class="p">(</span><span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">):</span>
-                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
-                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
-                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;arr&#39;</span><span class="p">]</span>
-                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;n&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]):</span>
-                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
-                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))),</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
-                    <span class="k">elif</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.6&#39;</span> <span class="ow">or</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.4&#39;</span><span class="p">:</span>
-                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
-                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                            <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
-                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
-                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))),</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
-                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
-
-            <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
-            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-            <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">diffmeas</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
-                <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
-                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-
-            <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                        <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-            <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                        <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">])</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
-    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="s1">&#39;reweighting factors with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
-
-    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
-    <span class="k">return</span> <span class="n">result</span>
-
-
-<span class="k">def</span> <span class="nf">extract_t0</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">dtr_read</span><span class="p">,</span> <span class="n">xmin</span><span class="p">,</span> <span class="n">spatial_extent</span><span class="p">,</span> <span class="n">fit_range</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Extract t0 from given .ms.dat files. Returns t0 as Obs.</span>
-
-<span class="sd">    It is assumed that all boundary effects have</span>
-<span class="sd">    sufficiently decayed at x0=xmin.</span>
-<span class="sd">    The data around the zero crossing of t^2&lt;E&gt; - 0.3</span>
-<span class="sd">    is fitted with a linear function</span>
-<span class="sd">    from which the exact root is extracted.</span>
-
-<span class="sd">    It is assumed that one measurement is performed for each config.</span>
-<span class="sd">    If this is not the case, the resulting idl, as well as the handling</span>
-<span class="sd">    of r_start, r_stop and r_step is wrong and the user has to correct</span>
-<span class="sd">    this in the resulting observable.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        Path to .ms.dat files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        Ensemble prefix</span>
-<span class="sd">    dtr_read : int</span>
-<span class="sd">        Determines how many trajectories should be skipped</span>
-<span class="sd">        when reading the ms.dat files.</span>
-<span class="sd">        Corresponds to dtr_cnfg / dtr_ms in the openQCD input file.</span>
-<span class="sd">    xmin : int</span>
-<span class="sd">        First timeslice where the boundary</span>
-<span class="sd">        effects have sufficiently decayed.</span>
-<span class="sd">    spatial_extent : int</span>
-<span class="sd">        spatial extent of the lattice, required for normalization.</span>
-<span class="sd">    fit_range : int</span>
-<span class="sd">        Number of data points left and right of the zero</span>
-<span class="sd">        crossing to be included in the linear fit. (Default: 5)</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum.</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum.</span>
-<span class="sd">    r_step : int</span>
-<span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
-<span class="sd">        If not given, r_step=1 is assumed.</span>
-<span class="sd">    plaquette : bool</span>
-<span class="sd">        If true extract the plaquette estimate of t0 instead.</span>
-<span class="sd">    names : list</span>
-<span class="sd">        list of names that is assigned to the data according according</span>
-<span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
-<span class="sd">    files : list</span>
-<span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
-<span class="sd">        files performed if given.</span>
-<span class="sd">    plot_fit : bool</span>
-<span class="sd">        If true, the fit for the extraction of t0 is shown together with the data.</span>
-<span class="sd">    assume_thermalization : bool</span>
-<span class="sd">        If True: If the first record divided by the distance between two measurements is larger than</span>
-<span class="sd">        1, it is assumed that this is due to thermalization and the first measurement belongs</span>
-<span class="sd">        to the first config (default).</span>
-<span class="sd">        If False: The config numbers are assumed to be traj_number // difference</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-        <span class="k">break</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.ms.dat&#39;</span><span class="p">):</span>
-                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Extract t0 from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-
-    <span class="n">Ysum</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
-
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-            <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
-            <span class="k">elif</span> <span class="n">dn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">or</span> <span class="n">nn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">or</span> <span class="n">tmax</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Replica parameters do not match.&#39;</span><span class="p">)</span>
-
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Step size:&#39;</span><span class="p">,</span> <span class="n">eps</span><span class="p">,</span> <span class="s1">&#39;, Maximal t value:&#39;</span><span class="p">,</span> <span class="n">dn</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span><span class="p">)</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="n">eps</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Values for eps do not match among replica.&#39;</span><span class="p">)</span>
-
-            <span class="n">Ysl</span> <span class="o">=</span> <span class="p">[]</span>
-
-            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
-                    <span class="k">break</span>
-                <span class="n">nc</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nc</span><span class="p">)</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-
-        <span class="n">Ysum</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysl</span><span class="p">):</span>
-            <span class="n">Ysum</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span> <span class="o">+</span> <span class="n">xmin</span><span class="p">:</span>
-                             <span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span> <span class="o">-</span> <span class="n">xmin</span><span class="p">])</span>
-                            <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
-
-        <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
-        <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;assume_thermalization&#39;</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span> <span class="ow">and</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
-            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
-            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-
-        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
-    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
-    <span class="n">t2E_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
-        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">nrep</span><span class="p">,</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysum</span><span class="p">):</span>
-            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">:</span>
-                <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg</span><span class="p">[</span><span class="n">n</span><span class="p">])</span>
-            <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">]</span>
-        <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
-        <span class="n">t2E_dict</span><span class="p">[</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">new_obs</span> <span class="o">/</span> <span class="p">(</span><span class="n">spatial_extent</span> <span class="o">**</span> <span class="mi">3</span><span class="p">)</span> <span class="o">-</span> <span class="mf">0.3</span>
-
-    <span class="n">zero_crossing</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()])</span> <span class="o">&gt;</span> <span class="mf">0.0</span><span class="p">)</span>
-
-    <span class="n">x</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
-                              <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
-    <span class="n">y</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
-                                <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
-    <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
-
-    <span class="n">fit_result</span> <span class="o">=</span> <span class="n">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plot_fit&#39;</span><span class="p">):</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-        <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
-        <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="n">xmore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
-        <span class="n">ymore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
-        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">]</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">xmore</span><span class="p">,</span> <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;x&#39;</span><span class="p">)</span>
-        <span class="n">xplot</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">x</span><span class="p">))</span>
-        <span class="n">yplot</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">xplot</span><span class="p">]</span>
-        <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">]</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xplot</span><span class="p">,</span> <span class="n">y1</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">],</span> <span class="n">y2</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">])</span>
-        <span class="n">retval</span> <span class="o">=</span> <span class="p">(</span><span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-        <span class="n">retval</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="n">ylim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_ylim</span><span class="p">()</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_betweenx</span><span class="p">(</span><span class="n">ylim</span><span class="p">,</span> <span class="n">x1</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">x2</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;gray&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.4</span><span class="p">)</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">ylim</span><span class="p">)</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t^2 \langle E(t) \rangle - 0.3 $&#39;</span><span class="p">)</span>
-        <span class="n">xlim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_xlim</span><span class="p">()</span>
-
-        <span class="n">fit_res</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]</span>
-        <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">])</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-        <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xlim</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">(</span><span class="n">xlim</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t/a^2$&#39;</span><span class="p">)</span>
-
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-    <span class="k">return</span> <span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-
-
-<span class="k">def</span> <span class="nf">_parse_array_openQCD2</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">n</span><span class="p">,</span> <span class="n">size</span><span class="p">,</span> <span class="n">wa</span><span class="p">,</span> <span class="n">quadrupel</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="n">arr</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="n">d</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span>
-            <span class="n">tmp</span> <span class="o">=</span> <span class="n">wa</span><span class="p">[</span><span class="n">i</span> <span class="o">*</span> <span class="n">n</span><span class="p">[</span><span class="mi">1</span><span class="p">]:(</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">n</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span>
-            <span class="k">if</span> <span class="n">quadrupel</span><span class="p">:</span>
-                <span class="n">tmp2</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">),</span> <span class="mi">2</span><span class="p">):</span>
-                    <span class="n">tmp2</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="n">j</span><span class="p">])</span>
-                <span class="n">arr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp2</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">arr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp</span><span class="p">))</span>
-
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Only two-dimensional arrays supported!&#39;</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">arr</span>
-
-
-<span class="k">def</span> <span class="nf">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">):</span>
-    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-    <span class="n">d</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span> <span class="o">*</span> <span class="n">d</span><span class="p">)</span>
-    <span class="n">n</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%d</span><span class="s1">i&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">d</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
-    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-    <span class="n">size</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">if</span> <span class="n">size</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
-        <span class="n">types</span> <span class="o">=</span> <span class="s1">&#39;i&#39;</span>
-    <span class="k">elif</span> <span class="n">size</span> <span class="o">==</span> <span class="mi">8</span><span class="p">:</span>
-        <span class="n">types</span> <span class="o">=</span> <span class="s1">&#39;d&#39;</span>
-    <span class="k">elif</span> <span class="n">size</span> <span class="o">==</span> <span class="mi">16</span><span class="p">:</span>
-        <span class="n">types</span> <span class="o">=</span> <span class="s1">&#39;dd&#39;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Type for size &#39;&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">size</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;&#39; not known.&quot;</span><span class="p">)</span>
-    <span class="n">m</span> <span class="o">=</span> <span class="n">n</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
-        <span class="n">m</span> <span class="o">*=</span> <span class="n">n</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-
-    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">m</span> <span class="o">*</span> <span class="n">size</span><span class="p">)</span>
-    <span class="n">tmp</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%d%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">m</span><span class="p">,</span> <span class="n">types</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
-
-    <span class="n">arr</span> <span class="o">=</span> <span class="n">_parse_array_openQCD2</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">n</span><span class="p">,</span> <span class="n">size</span><span class="p">,</span> <span class="n">tmp</span><span class="p">,</span> <span class="n">quadrupel</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;d&#39;</span><span class="p">:</span> <span class="n">d</span><span class="p">,</span> <span class="s1">&#39;n&#39;</span><span class="p">:</span> <span class="n">n</span><span class="p">,</span> <span class="s1">&#39;size&#39;</span><span class="p">:</span> <span class="n">size</span><span class="p">,</span> <span class="s1">&#39;arr&#39;</span><span class="p">:</span> <span class="n">arr</span><span class="p">}</span>
-
-
-<span class="k">def</span> <span class="nf">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">dtr_cnfg</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read the topologial charge based on openQCD gradient flow measurements.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path of the measurement files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat.</span>
-<span class="sd">        Ignored if file names are passed explicitly via keyword files.</span>
-<span class="sd">    c : double</span>
-<span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L.</span>
-<span class="sd">    dtr_cnfg : int</span>
-<span class="sd">        (optional) parameter that specifies the number of measurements</span>
-<span class="sd">        between two configs.</span>
-<span class="sd">        If it is not set, the distance between two measurements</span>
-<span class="sd">        in the file is assumed to be the distance between two configurations.</span>
-<span class="sd">    steps : int</span>
-<span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
-<span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
-<span class="sd">    version : str</span>
-<span class="sd">        Either openQCD or sfqcd, depending on the data.</span>
-<span class="sd">    L : int</span>
-<span class="sd">        spatial length of the lattice in L/a.</span>
-<span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
-<span class="sd">        this in the header</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum.</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum.</span>
-<span class="sd">    files : list</span>
-<span class="sd">        specify the exact files that need to be read</span>
-<span class="sd">        from path, practical if e.g. only one replicum is needed</span>
-<span class="sd">    names : list</span>
-<span class="sd">        Alternative labeling for replicas/ensembles.</span>
-<span class="sd">        Has to have the appropriate length.</span>
-<span class="sd">    Zeuthen_flow : bool</span>
-<span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
-<span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
-<span class="sd">    integer_charge : bool</span>
-<span class="sd">        If True, the charge is rounded towards the nearest integer on each config.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown openQCD version.&quot;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s2">&quot;steps&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">steps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;steps&quot;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">:</span>
-        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="n">supposed_L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">supposed_L</span> <span class="o">=</span> <span class="kc">None</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.gfms.dat&quot;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version of openQCD needs you to provide the spatial length of the lattice as parameter &#39;L&#39;.&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.ms.dat&quot;</span>
-
-    <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">files</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">found</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">files</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span><span class="p">):</span>
-            <span class="n">found</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-            <span class="k">break</span>
-        <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">found</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s2">&quot;*&quot;</span> <span class="o">+</span> <span class="n">postfix</span><span class="p">):</span>
-                <span class="n">files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
-    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">zeuthen</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;Zeuthen_flow&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">zeuthen</span> <span class="ow">and</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Zeuthen flow can only be used for version==sfqcd&#39;</span><span class="p">)</span>
-
-    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-
-            <span class="n">Q</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">traj_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-                <span class="k">if</span> <span class="n">zeuthen</span><span class="p">:</span>
-                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">8</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="n">zthfl</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>  <span class="c1"># Zeuthen flow -&gt; if it&#39;s equal to 2 it means that the Zeuthen flow is also &#39;measured&#39; (apart from the Wilson flow)</span>
-                <span class="n">ncs</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># number of different values for c in t_flow=1/8 c² L² -&gt; measurements done for ncs c&#39;s</span>
-                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>  <span class="c1"># lattice T/a</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-                <span class="n">Ls</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="k">if</span><span class="p">(</span><span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">and</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">2</span><span class="p">]):</span>
-                    <span class="n">L</span> <span class="o">=</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">supposed_L</span> <span class="o">==</span> <span class="n">L</span><span class="p">)</span> <span class="ow">and</span> <span class="n">supposed_L</span><span class="p">:</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It seems the length given in the header and by you contradict each other&quot;</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Found more than one spatial length in header!&quot;</span><span class="p">)</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">16</span><span class="p">)</span>
-                <span class="n">header2</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;dd&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="n">tol</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">cmax</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># highest value of c used</span>
-
-                <span class="k">if</span> <span class="n">c</span> <span class="o">&gt;</span> <span class="n">cmax</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Flow has been determined between c=0 and c=</span><span class="si">%lf</span><span class="s1"> with tolerance </span><span class="si">%lf</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">cmax</span><span class="p">,</span> <span class="n">tol</span><span class="p">))</span>
-
-                <span class="k">if</span><span class="p">(</span><span class="n">zthfl</span> <span class="o">==</span> <span class="mi">2</span><span class="p">):</span>
-                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">2</span>  <span class="c1"># number of flows</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">1</span>
-                <span class="n">iobs</span> <span class="o">=</span> <span class="mi">8</span> <span class="o">*</span> <span class="n">nfl</span>  <span class="c1"># number of flow observables calculated</span>
-
-                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
-                        <span class="k">break</span>
-                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>   <span class="c1"># trajectory number when measurement was done</span>
-
-                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">iobs</span><span class="p">):</span>
-                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">)</span>
-                            <span class="k">if</span> <span class="p">(</span><span class="n">i</span> <span class="o">==</span> <span class="n">obspos</span><span class="p">):</span>  <span class="c1"># determines the flow observable -&gt; i=0 &lt;-&gt; Zeuthen flow</span>
-                                <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">,</span> <span class="n">t</span><span class="p">))</span>
-
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="c1"># step size in integration steps &quot;dnms&quot;</span>
-                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="c1"># number of measurements, so &quot;ntot&quot;/dn</span>
-                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                <span class="c1"># lattice T/a</span>
-                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
-                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-
-                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
-                        <span class="k">break</span>
-                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-                    <span class="c1"># Wsl</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="c1"># Ysl</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="c1"># Qsl, which is asked for in this method</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="c1"># unpack the array of Qtops,</span>
-                    <span class="c1"># on each timeslice t=0,...,tmax-1 and the</span>
-                    <span class="c1"># measurement number in = 0...nn (see README.qcd1)</span>
-                    <span class="n">tmpd</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
-                    <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmpd</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in stepsize found&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="s1">&#39;steps&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">steps</span> <span class="o">!=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;steps and the found stepsize are not the same&quot;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">steps</span> <span class="o">=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-        <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">tr</span> <span class="o">//</span> <span class="n">steps</span> <span class="o">//</span> <span class="n">dtr_cnfg</span> <span class="k">for</span> <span class="n">tr</span> <span class="ow">in</span> <span class="n">traj_list</span><span class="p">])</span>
-        <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config. Offset = </span><span class="si">%d</span><span class="s1"> configs (</span><span class="si">%d</span><span class="s1"> trajectories / cycles)&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                <span class="n">offset</span><span class="p">,</span> <span class="n">offset</span> <span class="o">*</span> <span class="n">steps</span><span class="p">))</span>
-            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-
-        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-            <span class="n">cstepsize</span> <span class="o">=</span> <span class="n">cmax</span> <span class="o">/</span> <span class="n">ncs</span>
-            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">c</span> <span class="o">/</span> <span class="n">cstepsize</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">t_aim</span> <span class="o">=</span> <span class="p">(</span><span class="n">c</span> <span class="o">*</span> <span class="n">L</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="mi">8</span>
-            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">t_aim</span> <span class="o">/</span> <span class="n">eps</span> <span class="o">/</span> <span class="n">dn</span><span class="p">)</span>
-
-        <span class="n">Q_sum</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Q</span><span class="p">):</span>
-            <span class="n">Q_sum</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">sum</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span><span class="p">:</span><span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span><span class="p">])</span>
-                         <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
-        <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">)</span> <span class="o">//</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)):</span>
-                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">i</span> <span class="o">*</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="n">index_aim</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">):</span>
-                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">dtr_cnfg</span> <span class="o">*</span> <span class="n">i</span><span class="p">][</span><span class="n">index_aim</span><span class="p">])</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;qtops and traj_list dont have the same length&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
-            <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[</span><span class="nb">round</span><span class="p">(</span><span class="n">q</span><span class="p">)</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">Q_top</span><span class="p">]</span>
-
-        <span class="n">truncated_file</span> <span class="o">=</span> <span class="n">file</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">postfix</span><span class="p">)]</span>
-
-        <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
-            <span class="n">ens_name</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span>
-            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ens_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_file</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;names&quot;</span><span class="p">)</span>
-            <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
-        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span>
-
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]),</span> <span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">deltas</span><span class="p">[</span><span class="n">nrep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">nrep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">result</span>
-
-
-<span class="k">def</span> <span class="nf">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Returns the projection to the topological charge sector defined by target.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : Obs</span>
-<span class="sd">        Topological charge.</span>
-<span class="sd">    target : int</span>
-<span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">qtop</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You can not use a reweighted observable for reweighting!&#39;</span><span class="p">)</span>
-
-    <span class="n">proj_qtop</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
-        <span class="n">proj_qtop</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mi">1</span> <span class="k">if</span> <span class="nb">round</span><span class="p">(</span><span class="n">qtop</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">q</span><span class="p">)</span> <span class="o">==</span> <span class="n">target</span> <span class="k">else</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">]]))</span>
-
-    <span class="n">reto</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">proj_qtop</span><span class="p">,</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">qtop</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">])</span>
-    <span class="n">reto</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">qtop</span><span class="o">.</span><span class="n">is_merged</span>
-    <span class="k">return</span> <span class="n">reto</span>
-
-
-<span class="k">def</span> <span class="nf">read_qtop_sector</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Constructs reweighting factors to a specified topological sector.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path of the measurement files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat</span>
-<span class="sd">    c : double</span>
-<span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L</span>
-<span class="sd">    target : int</span>
-<span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
-<span class="sd">    dtr_cnfg : int</span>
-<span class="sd">        (optional) parameter that specifies the number of trajectories</span>
-<span class="sd">        between two configs.</span>
-<span class="sd">        if it is not set, the distance between two measurements</span>
-<span class="sd">        in the file is assumed to be the distance between two configurations.</span>
-<span class="sd">    steps : int</span>
-<span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
-<span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
-<span class="sd">    version : str</span>
-<span class="sd">        version string of the openQCD (sfqcd) version used to create</span>
-<span class="sd">        the ensemble. Default is 2.0. May also be set to sfqcd.</span>
-<span class="sd">    L : int</span>
-<span class="sd">        spatial length of the lattice in L/a.</span>
-<span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
-<span class="sd">        this in the header</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        offset of the first ensemble, making it easier to match</span>
-<span class="sd">        later on with other Obs</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        last configurations that need to be read (per replicum)</span>
-<span class="sd">    files : list</span>
-<span class="sd">        specify the exact files that need to be read</span>
-<span class="sd">        from path, practical if e.g. only one replicum is needed</span>
-<span class="sd">    names : list</span>
-<span class="sd">        Alternative labeling for replicas/ensembles.</span>
-<span class="sd">        Has to have the appropriate length</span>
-<span class="sd">    Zeuthen_flow : bool</span>
-<span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
-<span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;target&#39; has to be an integer.&quot;</span><span class="p">)</span>
-
-    <span class="n">kwargs</span><span class="p">[</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
-    <span class="n">qtop</span> <span class="o">=</span> <span class="n">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="n">target</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">os</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">fnmatch</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">import</span> <span class="nn">re</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="kn">import</span> <span class="nn">struct</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="kn">import</span> <span class="nn">warnings</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a><span class="kn">from</span> <span class="nn">matplotlib</span> <span class="kn">import</span> <span class="n">gridspec</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="kn">from</span> <span class="nn">..fits</span> <span class="kn">import</span> <span class="n">fit_lin</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="k">def</span> <span class="nf">read_rwms</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s1">&#39;2.0&#39;</span><span class="p">,</span> <span class="n">names</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a>    <span class="sd">&quot;&quot;&quot;Read rwms format from given folder structure. Returns a list of length nrw</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd">    Parameters</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd">    ----------</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="sd">    path : str</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="sd">        path that contains the data files</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd">    prefix : str</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd">        all files in path that start with prefix are considered as input files.</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd">        May be used together postfix to consider only special file endings.</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="sd">        Prefix is ignored, if the keyword &#39;files&#39; is used.</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="sd">    version : str</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="sd">        version of openQCD, default 2.0</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="sd">    names : list</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a><span class="sd">        list of names that is assigned to the data according according</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a><span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="sd">    r_start : list</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a><span class="sd">        list which contains the first config to be read for each replicum</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a><span class="sd">    r_stop : list</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a><span class="sd">        list which contains the last config to be read for each replicum</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a><span class="sd">    r_step : int</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a><span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a><span class="sd">        If not given, r_step=1 is assumed.</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a><span class="sd">    postfix : str</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a><span class="sd">        postfix of the file to read, e.g. &#39;.ms1&#39; for openQCD-files</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a><span class="sd">    files : list</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a><span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a><span class="sd">        files performed if given.</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a><span class="sd">    print_err : bool</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a><span class="sd">        Print additional information that is useful for debugging.</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>    <span class="n">known_oqcd_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;1.4&#39;</span><span class="p">,</span> <span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">version</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">):</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown openQCD version defined!&#39;</span><span class="p">)</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Working with openQCD version &quot;</span> <span class="o">+</span> <span class="n">version</span><span class="p">)</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>    <span class="k">if</span> <span class="s1">&#39;postfix&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;postfix&#39;</span><span class="p">)</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>        <span class="k">break</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span> <span class="o">+</span> <span class="n">postfix</span> <span class="o">+</span> <span class="s1">&#39;.dat&#39;</span><span class="p">):</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read reweighting factors from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>          <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>    <span class="k">if</span> <span class="n">names</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>            <span class="n">suffixes</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.dat&quot;</span><span class="p">,</span> <span class="s2">&quot;.rwms&quot;</span><span class="p">,</span> <span class="s2">&quot;.ms1&quot;</span><span class="p">]</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>            <span class="k">for</span> <span class="n">suffix</span> <span class="ow">in</span> <span class="n">suffixes</span><span class="p">:</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>                <span class="k">if</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="n">suffix</span><span class="p">):</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>                    <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">suffix</span><span class="p">)]</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a>        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>        <span class="nb">print</span><span class="p">()</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>                    <span class="n">nrw</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nrw</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a>                <span class="k">if</span> <span class="p">((</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">and</span> <span class="p">(</span><span class="ow">not</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">))</span> <span class="ow">or</span> <span class="p">(</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">)):</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of reweighting factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a>                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>            <span class="c1"># This block is necessary for openQCD1.6 and openQCD2.0 ms1 files</span>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a>            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a>            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]:</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a>            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a>                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a>            <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">))[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;something is wrong!&#39;</span><span class="p">)</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a>            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a>            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a>                    <span class="k">break</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a>                <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a>                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">config_no</span><span class="p">)</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a>                    <span class="k">if</span><span class="p">(</span><span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">):</span>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a>                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a>                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;arr&#39;</span><span class="p">]</span>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a>                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;n&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]):</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a>                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a>                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))),</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))))</span>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a>                    <span class="k">elif</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.6&#39;</span> <span class="ow">or</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.4&#39;</span><span class="p">:</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a>                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>                            <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a>                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))),</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))))</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a>                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>            <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a>            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a>            <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">diffmeas</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a>                <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a>                <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a>                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>            <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a>                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a>                    <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a>                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a>                        <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>            <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a>                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a>                    <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a>                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a>                        <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a>                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">])</span>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a>    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="s1">&#39;reweighting factors with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a>    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a><span class="k">def</span> <span class="nf">extract_t0</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">dtr_read</span><span class="p">,</span> <span class="n">xmin</span><span class="p">,</span> <span class="n">spatial_extent</span><span class="p">,</span> <span class="n">fit_range</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a>    <span class="sd">&quot;&quot;&quot;Extract t0 from given .ms.dat files. Returns t0 as Obs.</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a><span class="sd">    It is assumed that all boundary effects have</span>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a><span class="sd">    sufficiently decayed at x0=xmin.</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a><span class="sd">    The data around the zero crossing of t^2&lt;E&gt; - 0.3</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a><span class="sd">    is fitted with a linear function</span>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a><span class="sd">    from which the exact root is extracted.</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a><span class="sd">    It is assumed that one measurement is performed for each config.</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a><span class="sd">    If this is not the case, the resulting idl, as well as the handling</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a><span class="sd">    of r_start, r_stop and r_step is wrong and the user has to correct</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a><span class="sd">    this in the resulting observable.</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a><span class="sd">    Parameters</span>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a><span class="sd">    ----------</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a><span class="sd">    path : str</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a><span class="sd">        Path to .ms.dat files</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a><span class="sd">    prefix : str</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a><span class="sd">        Ensemble prefix</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a><span class="sd">    dtr_read : int</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a><span class="sd">        Determines how many trajectories should be skipped</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a><span class="sd">        when reading the ms.dat files.</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a><span class="sd">        Corresponds to dtr_cnfg / dtr_ms in the openQCD input file.</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a><span class="sd">    xmin : int</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a><span class="sd">        First timeslice where the boundary</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a><span class="sd">        effects have sufficiently decayed.</span>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a><span class="sd">    spatial_extent : int</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a><span class="sd">        spatial extent of the lattice, required for normalization.</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a><span class="sd">    fit_range : int</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a><span class="sd">        Number of data points left and right of the zero</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a><span class="sd">        crossing to be included in the linear fit. (Default: 5)</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a><span class="sd">    r_start : list</span>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a><span class="sd">        list which contains the first config to be read for each replicum.</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a><span class="sd">    r_stop : list</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a><span class="sd">        list which contains the last config to be read for each replicum.</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a><span class="sd">    r_step : int</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a><span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a><span class="sd">        If not given, r_step=1 is assumed.</span>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a><span class="sd">    plaquette : bool</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a><span class="sd">        If true extract the plaquette estimate of t0 instead.</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a><span class="sd">    names : list</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a><span class="sd">        list of names that is assigned to the data according according</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a><span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a><span class="sd">    files : list</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a><span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a><span class="sd">        files performed if given.</span>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a><span class="sd">    plot_fit : bool</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a><span class="sd">        If true, the fit for the extraction of t0 is shown together with the data.</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a><span class="sd">    assume_thermalization : bool</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a><span class="sd">        If True: If the first record divided by the distance between two measurements is larger than</span>
+</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a><span class="sd">        1, it is assumed that this is due to thermalization and the first measurement belongs</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a><span class="sd">        to the first config (default).</span>
+</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a><span class="sd">        If False: The config numbers are assumed to be traj_number // difference</span>
+</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a>
+</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a>    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a>        <span class="k">break</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>
+</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a>
+</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a>    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a>        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a>        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.ms.dat&#39;</span><span class="p">):</span>
+</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a>                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a>    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a>
+</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a>
+</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a>
+</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a>    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
+</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a>
+</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Extract t0 from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a>
+</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a>    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a>        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a>            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a>            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a>            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a>
+</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a>    <span class="n">Ysum</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a>
+</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a>    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a>    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a>
+</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a>    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
+</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a>
+</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a>            <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a>                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a>                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a>                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a>            <span class="k">elif</span> <span class="n">dn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">or</span> <span class="n">nn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">or</span> <span class="n">tmax</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]:</span>
+</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Replica parameters do not match.&#39;</span><span class="p">)</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a>
+</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a>                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-357"><a href="#L-357"><span class="linenos">357</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Step size:&#39;</span><span class="p">,</span> <span class="n">eps</span><span class="p">,</span> <span class="s1">&#39;, Maximal t value:&#39;</span><span class="p">,</span> <span class="n">dn</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span><span class="p">)</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span>
+</span><span id="L-358"><a href="#L-358"><span class="linenos">358</span></a>            <span class="k">elif</span> <span class="n">eps</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
+</span><span id="L-359"><a href="#L-359"><span class="linenos">359</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Values for eps do not match among replica.&#39;</span><span class="p">)</span>
+</span><span id="L-360"><a href="#L-360"><span class="linenos">360</span></a>
+</span><span id="L-361"><a href="#L-361"><span class="linenos">361</span></a>            <span class="n">Ysl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-362"><a href="#L-362"><span class="linenos">362</span></a>
+</span><span id="L-363"><a href="#L-363"><span class="linenos">363</span></a>            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-364"><a href="#L-364"><span class="linenos">364</span></a>            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-365"><a href="#L-365"><span class="linenos">365</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-366"><a href="#L-366"><span class="linenos">366</span></a>                <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="L-367"><a href="#L-367"><span class="linenos">367</span></a>                    <span class="k">break</span>
+</span><span id="L-368"><a href="#L-368"><span class="linenos">368</span></a>                <span class="n">nc</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-369"><a href="#L-369"><span class="linenos">369</span></a>                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nc</span><span class="p">)</span>
+</span><span id="L-370"><a href="#L-370"><span class="linenos">370</span></a>
+</span><span id="L-371"><a href="#L-371"><span class="linenos">371</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-372"><a href="#L-372"><span class="linenos">372</span></a>                <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
+</span><span id="L-373"><a href="#L-373"><span class="linenos">373</span></a>                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-374"><a href="#L-374"><span class="linenos">374</span></a>                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
+</span><span id="L-375"><a href="#L-375"><span class="linenos">375</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-376"><a href="#L-376"><span class="linenos">376</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
+</span><span id="L-377"><a href="#L-377"><span class="linenos">377</span></a>                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-378"><a href="#L-378"><span class="linenos">378</span></a>                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
+</span><span id="L-379"><a href="#L-379"><span class="linenos">379</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-380"><a href="#L-380"><span class="linenos">380</span></a>
+</span><span id="L-381"><a href="#L-381"><span class="linenos">381</span></a>        <span class="n">Ysum</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-382"><a href="#L-382"><span class="linenos">382</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysl</span><span class="p">):</span>
+</span><span id="L-383"><a href="#L-383"><span class="linenos">383</span></a>            <span class="n">Ysum</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span> <span class="o">+</span> <span class="n">xmin</span><span class="p">:</span>
+</span><span id="L-384"><a href="#L-384"><span class="linenos">384</span></a>                             <span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span> <span class="o">-</span> <span class="n">xmin</span><span class="p">])</span>
+</span><span id="L-385"><a href="#L-385"><span class="linenos">385</span></a>                            <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
+</span><span id="L-386"><a href="#L-386"><span class="linenos">386</span></a>
+</span><span id="L-387"><a href="#L-387"><span class="linenos">387</span></a>        <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="L-388"><a href="#L-388"><span class="linenos">388</span></a>        <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="L-389"><a href="#L-389"><span class="linenos">389</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;assume_thermalization&#39;</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span> <span class="ow">and</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-390"><a href="#L-390"><span class="linenos">390</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
+</span><span id="L-391"><a href="#L-391"><span class="linenos">391</span></a>            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="L-392"><a href="#L-392"><span class="linenos">392</span></a>            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="L-393"><a href="#L-393"><span class="linenos">393</span></a>
+</span><span id="L-394"><a href="#L-394"><span class="linenos">394</span></a>        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-395"><a href="#L-395"><span class="linenos">395</span></a>            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="L-396"><a href="#L-396"><span class="linenos">396</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-397"><a href="#L-397"><span class="linenos">397</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="L-398"><a href="#L-398"><span class="linenos">398</span></a>                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="L-399"><a href="#L-399"><span class="linenos">399</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="L-400"><a href="#L-400"><span class="linenos">400</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="L-401"><a href="#L-401"><span class="linenos">401</span></a>                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-402"><a href="#L-402"><span class="linenos">402</span></a>
+</span><span id="L-403"><a href="#L-403"><span class="linenos">403</span></a>        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-404"><a href="#L-404"><span class="linenos">404</span></a>            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-405"><a href="#L-405"><span class="linenos">405</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-406"><a href="#L-406"><span class="linenos">406</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="L-407"><a href="#L-407"><span class="linenos">407</span></a>                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="L-408"><a href="#L-408"><span class="linenos">408</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="L-409"><a href="#L-409"><span class="linenos">409</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="L-410"><a href="#L-410"><span class="linenos">410</span></a>                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-411"><a href="#L-411"><span class="linenos">411</span></a>
+</span><span id="L-412"><a href="#L-412"><span class="linenos">412</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
+</span><span id="L-413"><a href="#L-413"><span class="linenos">413</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
+</span><span id="L-414"><a href="#L-414"><span class="linenos">414</span></a>    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
+</span><span id="L-415"><a href="#L-415"><span class="linenos">415</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
+</span><span id="L-416"><a href="#L-416"><span class="linenos">416</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-417"><a href="#L-417"><span class="linenos">417</span></a>
+</span><span id="L-418"><a href="#L-418"><span class="linenos">418</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
+</span><span id="L-419"><a href="#L-419"><span class="linenos">419</span></a>    <span class="n">t2E_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-420"><a href="#L-420"><span class="linenos">420</span></a>    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-421"><a href="#L-421"><span class="linenos">421</span></a>        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-422"><a href="#L-422"><span class="linenos">422</span></a>        <span class="k">for</span> <span class="n">nrep</span><span class="p">,</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysum</span><span class="p">):</span>
+</span><span id="L-423"><a href="#L-423"><span class="linenos">423</span></a>            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-424"><a href="#L-424"><span class="linenos">424</span></a>            <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">:</span>
+</span><span id="L-425"><a href="#L-425"><span class="linenos">425</span></a>                <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg</span><span class="p">[</span><span class="n">n</span><span class="p">])</span>
+</span><span id="L-426"><a href="#L-426"><span class="linenos">426</span></a>            <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">]</span>
+</span><span id="L-427"><a href="#L-427"><span class="linenos">427</span></a>        <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
+</span><span id="L-428"><a href="#L-428"><span class="linenos">428</span></a>        <span class="n">t2E_dict</span><span class="p">[</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">new_obs</span> <span class="o">/</span> <span class="p">(</span><span class="n">spatial_extent</span> <span class="o">**</span> <span class="mi">3</span><span class="p">)</span> <span class="o">-</span> <span class="mf">0.3</span>
+</span><span id="L-429"><a href="#L-429"><span class="linenos">429</span></a>
+</span><span id="L-430"><a href="#L-430"><span class="linenos">430</span></a>    <span class="n">zero_crossing</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="L-431"><a href="#L-431"><span class="linenos">431</span></a>        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()])</span> <span class="o">&gt;</span> <span class="mf">0.0</span><span class="p">)</span>
+</span><span id="L-432"><a href="#L-432"><span class="linenos">432</span></a>
+</span><span id="L-433"><a href="#L-433"><span class="linenos">433</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
+</span><span id="L-434"><a href="#L-434"><span class="linenos">434</span></a>                              <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
+</span><span id="L-435"><a href="#L-435"><span class="linenos">435</span></a>    <span class="n">y</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
+</span><span id="L-436"><a href="#L-436"><span class="linenos">436</span></a>                                <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
+</span><span id="L-437"><a href="#L-437"><span class="linenos">437</span></a>    <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
+</span><span id="L-438"><a href="#L-438"><span class="linenos">438</span></a>
+</span><span id="L-439"><a href="#L-439"><span class="linenos">439</span></a>    <span class="n">fit_result</span> <span class="o">=</span> <span class="n">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="L-440"><a href="#L-440"><span class="linenos">440</span></a>
+</span><span id="L-441"><a href="#L-441"><span class="linenos">441</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plot_fit&#39;</span><span class="p">):</span>
+</span><span id="L-442"><a href="#L-442"><span class="linenos">442</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="L-443"><a href="#L-443"><span class="linenos">443</span></a>        <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
+</span><span id="L-444"><a href="#L-444"><span class="linenos">444</span></a>        <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-445"><a href="#L-445"><span class="linenos">445</span></a>        <span class="n">xmore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
+</span><span id="L-446"><a href="#L-446"><span class="linenos">446</span></a>        <span class="n">ymore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
+</span><span id="L-447"><a href="#L-447"><span class="linenos">447</span></a>        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">]</span>
+</span><span id="L-448"><a href="#L-448"><span class="linenos">448</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">xmore</span><span class="p">,</span> <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;x&#39;</span><span class="p">)</span>
+</span><span id="L-449"><a href="#L-449"><span class="linenos">449</span></a>        <span class="n">xplot</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">x</span><span class="p">))</span>
+</span><span id="L-450"><a href="#L-450"><span class="linenos">450</span></a>        <span class="n">yplot</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">xplot</span><span class="p">]</span>
+</span><span id="L-451"><a href="#L-451"><span class="linenos">451</span></a>        <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">]</span>
+</span><span id="L-452"><a href="#L-452"><span class="linenos">452</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xplot</span><span class="p">,</span> <span class="n">y1</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">],</span> <span class="n">y2</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">])</span>
+</span><span id="L-453"><a href="#L-453"><span class="linenos">453</span></a>        <span class="n">retval</span> <span class="o">=</span> <span class="p">(</span><span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-454"><a href="#L-454"><span class="linenos">454</span></a>        <span class="n">retval</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="L-455"><a href="#L-455"><span class="linenos">455</span></a>        <span class="n">ylim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_ylim</span><span class="p">()</span>
+</span><span id="L-456"><a href="#L-456"><span class="linenos">456</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_betweenx</span><span class="p">(</span><span class="n">ylim</span><span class="p">,</span> <span class="n">x1</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">x2</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;gray&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.4</span><span class="p">)</span>
+</span><span id="L-457"><a href="#L-457"><span class="linenos">457</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">ylim</span><span class="p">)</span>
+</span><span id="L-458"><a href="#L-458"><span class="linenos">458</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t^2 \langle E(t) \rangle - 0.3 $&#39;</span><span class="p">)</span>
+</span><span id="L-459"><a href="#L-459"><span class="linenos">459</span></a>        <span class="n">xlim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_xlim</span><span class="p">()</span>
+</span><span id="L-460"><a href="#L-460"><span class="linenos">460</span></a>
+</span><span id="L-461"><a href="#L-461"><span class="linenos">461</span></a>        <span class="n">fit_res</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]</span>
+</span><span id="L-462"><a href="#L-462"><span class="linenos">462</span></a>        <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">])</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-463"><a href="#L-463"><span class="linenos">463</span></a>        <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-464"><a href="#L-464"><span class="linenos">464</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+</span><span id="L-465"><a href="#L-465"><span class="linenos">465</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
+</span><span id="L-466"><a href="#L-466"><span class="linenos">466</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-467"><a href="#L-467"><span class="linenos">467</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
+</span><span id="L-468"><a href="#L-468"><span class="linenos">468</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xlim</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
+</span><span id="L-469"><a href="#L-469"><span class="linenos">469</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">(</span><span class="n">xlim</span><span class="p">)</span>
+</span><span id="L-470"><a href="#L-470"><span class="linenos">470</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
+</span><span id="L-471"><a href="#L-471"><span class="linenos">471</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t/a^2$&#39;</span><span class="p">)</span>
+</span><span id="L-472"><a href="#L-472"><span class="linenos">472</span></a>
+</span><span id="L-473"><a href="#L-473"><span class="linenos">473</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-474"><a href="#L-474"><span class="linenos">474</span></a>    <span class="k">return</span> <span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-475"><a href="#L-475"><span class="linenos">475</span></a>
+</span><span id="L-476"><a href="#L-476"><span class="linenos">476</span></a>
+</span><span id="L-477"><a href="#L-477"><span class="linenos">477</span></a><span class="k">def</span> <span class="nf">_parse_array_openQCD2</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">n</span><span class="p">,</span> <span class="n">size</span><span class="p">,</span> <span class="n">wa</span><span class="p">,</span> <span class="n">quadrupel</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+</span><span id="L-478"><a href="#L-478"><span class="linenos">478</span></a>    <span class="n">arr</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-479"><a href="#L-479"><span class="linenos">479</span></a>    <span class="k">if</span> <span class="n">d</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-480"><a href="#L-480"><span class="linenos">480</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">n</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span>
+</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a>            <span class="n">tmp</span> <span class="o">=</span> <span class="n">wa</span><span class="p">[</span><span class="n">i</span> <span class="o">*</span> <span class="n">n</span><span class="p">[</span><span class="mi">1</span><span class="p">]:(</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">n</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a>            <span class="k">if</span> <span class="n">quadrupel</span><span class="p">:</span>
+</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a>                <span class="n">tmp2</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">),</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a>                    <span class="n">tmp2</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="n">j</span><span class="p">])</span>
+</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a>                <span class="n">arr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp2</span><span class="p">)</span>
+</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a>                <span class="n">arr</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp</span><span class="p">))</span>
+</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a>
+</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Only two-dimensional arrays supported!&#39;</span><span class="p">)</span>
+</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a>
+</span><span id="L-493"><a href="#L-493"><span class="linenos">493</span></a>    <span class="k">return</span> <span class="n">arr</span>
+</span><span id="L-494"><a href="#L-494"><span class="linenos">494</span></a>
+</span><span id="L-495"><a href="#L-495"><span class="linenos">495</span></a>
+</span><span id="L-496"><a href="#L-496"><span class="linenos">496</span></a><span class="k">def</span> <span class="nf">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">):</span>
+</span><span id="L-497"><a href="#L-497"><span class="linenos">497</span></a>    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-498"><a href="#L-498"><span class="linenos">498</span></a>    <span class="n">d</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-499"><a href="#L-499"><span class="linenos">499</span></a>    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span> <span class="o">*</span> <span class="n">d</span><span class="p">)</span>
+</span><span id="L-500"><a href="#L-500"><span class="linenos">500</span></a>    <span class="n">n</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%d</span><span class="s1">i&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">d</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-501"><a href="#L-501"><span class="linenos">501</span></a>    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-502"><a href="#L-502"><span class="linenos">502</span></a>    <span class="n">size</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-503"><a href="#L-503"><span class="linenos">503</span></a>    <span class="k">if</span> <span class="n">size</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="L-504"><a href="#L-504"><span class="linenos">504</span></a>        <span class="n">types</span> <span class="o">=</span> <span class="s1">&#39;i&#39;</span>
+</span><span id="L-505"><a href="#L-505"><span class="linenos">505</span></a>    <span class="k">elif</span> <span class="n">size</span> <span class="o">==</span> <span class="mi">8</span><span class="p">:</span>
+</span><span id="L-506"><a href="#L-506"><span class="linenos">506</span></a>        <span class="n">types</span> <span class="o">=</span> <span class="s1">&#39;d&#39;</span>
+</span><span id="L-507"><a href="#L-507"><span class="linenos">507</span></a>    <span class="k">elif</span> <span class="n">size</span> <span class="o">==</span> <span class="mi">16</span><span class="p">:</span>
+</span><span id="L-508"><a href="#L-508"><span class="linenos">508</span></a>        <span class="n">types</span> <span class="o">=</span> <span class="s1">&#39;dd&#39;</span>
+</span><span id="L-509"><a href="#L-509"><span class="linenos">509</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-510"><a href="#L-510"><span class="linenos">510</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Type for size &#39;&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">size</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;&#39; not known.&quot;</span><span class="p">)</span>
+</span><span id="L-511"><a href="#L-511"><span class="linenos">511</span></a>    <span class="n">m</span> <span class="o">=</span> <span class="n">n</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-512"><a href="#L-512"><span class="linenos">512</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">d</span><span class="p">):</span>
+</span><span id="L-513"><a href="#L-513"><span class="linenos">513</span></a>        <span class="n">m</span> <span class="o">*=</span> <span class="n">n</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-514"><a href="#L-514"><span class="linenos">514</span></a>
+</span><span id="L-515"><a href="#L-515"><span class="linenos">515</span></a>    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">m</span> <span class="o">*</span> <span class="n">size</span><span class="p">)</span>
+</span><span id="L-516"><a href="#L-516"><span class="linenos">516</span></a>    <span class="n">tmp</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;</span><span class="si">%d%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">m</span><span class="p">,</span> <span class="n">types</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-517"><a href="#L-517"><span class="linenos">517</span></a>
+</span><span id="L-518"><a href="#L-518"><span class="linenos">518</span></a>    <span class="n">arr</span> <span class="o">=</span> <span class="n">_parse_array_openQCD2</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">n</span><span class="p">,</span> <span class="n">size</span><span class="p">,</span> <span class="n">tmp</span><span class="p">,</span> <span class="n">quadrupel</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-519"><a href="#L-519"><span class="linenos">519</span></a>    <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;d&#39;</span><span class="p">:</span> <span class="n">d</span><span class="p">,</span> <span class="s1">&#39;n&#39;</span><span class="p">:</span> <span class="n">n</span><span class="p">,</span> <span class="s1">&#39;size&#39;</span><span class="p">:</span> <span class="n">size</span><span class="p">,</span> <span class="s1">&#39;arr&#39;</span><span class="p">:</span> <span class="n">arr</span><span class="p">}</span>
+</span><span id="L-520"><a href="#L-520"><span class="linenos">520</span></a>
+</span><span id="L-521"><a href="#L-521"><span class="linenos">521</span></a>
+</span><span id="L-522"><a href="#L-522"><span class="linenos">522</span></a><span class="k">def</span> <span class="nf">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">dtr_cnfg</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-523"><a href="#L-523"><span class="linenos">523</span></a>    <span class="sd">&quot;&quot;&quot;Read the topologial charge based on openQCD gradient flow measurements.</span>
+</span><span id="L-524"><a href="#L-524"><span class="linenos">524</span></a>
+</span><span id="L-525"><a href="#L-525"><span class="linenos">525</span></a><span class="sd">    Parameters</span>
+</span><span id="L-526"><a href="#L-526"><span class="linenos">526</span></a><span class="sd">    ----------</span>
+</span><span id="L-527"><a href="#L-527"><span class="linenos">527</span></a><span class="sd">    path : str</span>
+</span><span id="L-528"><a href="#L-528"><span class="linenos">528</span></a><span class="sd">        path of the measurement files</span>
+</span><span id="L-529"><a href="#L-529"><span class="linenos">529</span></a><span class="sd">    prefix : str</span>
+</span><span id="L-530"><a href="#L-530"><span class="linenos">530</span></a><span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat.</span>
+</span><span id="L-531"><a href="#L-531"><span class="linenos">531</span></a><span class="sd">        Ignored if file names are passed explicitly via keyword files.</span>
+</span><span id="L-532"><a href="#L-532"><span class="linenos">532</span></a><span class="sd">    c : double</span>
+</span><span id="L-533"><a href="#L-533"><span class="linenos">533</span></a><span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L.</span>
+</span><span id="L-534"><a href="#L-534"><span class="linenos">534</span></a><span class="sd">    dtr_cnfg : int</span>
+</span><span id="L-535"><a href="#L-535"><span class="linenos">535</span></a><span class="sd">        (optional) parameter that specifies the number of measurements</span>
+</span><span id="L-536"><a href="#L-536"><span class="linenos">536</span></a><span class="sd">        between two configs.</span>
+</span><span id="L-537"><a href="#L-537"><span class="linenos">537</span></a><span class="sd">        If it is not set, the distance between two measurements</span>
+</span><span id="L-538"><a href="#L-538"><span class="linenos">538</span></a><span class="sd">        in the file is assumed to be the distance between two configurations.</span>
+</span><span id="L-539"><a href="#L-539"><span class="linenos">539</span></a><span class="sd">    steps : int</span>
+</span><span id="L-540"><a href="#L-540"><span class="linenos">540</span></a><span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
+</span><span id="L-541"><a href="#L-541"><span class="linenos">541</span></a><span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
+</span><span id="L-542"><a href="#L-542"><span class="linenos">542</span></a><span class="sd">    version : str</span>
+</span><span id="L-543"><a href="#L-543"><span class="linenos">543</span></a><span class="sd">        Either openQCD or sfqcd, depending on the data.</span>
+</span><span id="L-544"><a href="#L-544"><span class="linenos">544</span></a><span class="sd">    L : int</span>
+</span><span id="L-545"><a href="#L-545"><span class="linenos">545</span></a><span class="sd">        spatial length of the lattice in L/a.</span>
+</span><span id="L-546"><a href="#L-546"><span class="linenos">546</span></a><span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
+</span><span id="L-547"><a href="#L-547"><span class="linenos">547</span></a><span class="sd">        this in the header</span>
+</span><span id="L-548"><a href="#L-548"><span class="linenos">548</span></a><span class="sd">    r_start : list</span>
+</span><span id="L-549"><a href="#L-549"><span class="linenos">549</span></a><span class="sd">        list which contains the first config to be read for each replicum.</span>
+</span><span id="L-550"><a href="#L-550"><span class="linenos">550</span></a><span class="sd">    r_stop : list</span>
+</span><span id="L-551"><a href="#L-551"><span class="linenos">551</span></a><span class="sd">        list which contains the last config to be read for each replicum.</span>
+</span><span id="L-552"><a href="#L-552"><span class="linenos">552</span></a><span class="sd">    files : list</span>
+</span><span id="L-553"><a href="#L-553"><span class="linenos">553</span></a><span class="sd">        specify the exact files that need to be read</span>
+</span><span id="L-554"><a href="#L-554"><span class="linenos">554</span></a><span class="sd">        from path, practical if e.g. only one replicum is needed</span>
+</span><span id="L-555"><a href="#L-555"><span class="linenos">555</span></a><span class="sd">    names : list</span>
+</span><span id="L-556"><a href="#L-556"><span class="linenos">556</span></a><span class="sd">        Alternative labeling for replicas/ensembles.</span>
+</span><span id="L-557"><a href="#L-557"><span class="linenos">557</span></a><span class="sd">        Has to have the appropriate length.</span>
+</span><span id="L-558"><a href="#L-558"><span class="linenos">558</span></a><span class="sd">    Zeuthen_flow : bool</span>
+</span><span id="L-559"><a href="#L-559"><span class="linenos">559</span></a><span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
+</span><span id="L-560"><a href="#L-560"><span class="linenos">560</span></a><span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
+</span><span id="L-561"><a href="#L-561"><span class="linenos">561</span></a><span class="sd">    integer_charge : bool</span>
+</span><span id="L-562"><a href="#L-562"><span class="linenos">562</span></a><span class="sd">        If True, the charge is rounded towards the nearest integer on each config.</span>
+</span><span id="L-563"><a href="#L-563"><span class="linenos">563</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-564"><a href="#L-564"><span class="linenos">564</span></a>    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">]</span>
+</span><span id="L-565"><a href="#L-565"><span class="linenos">565</span></a>
+</span><span id="L-566"><a href="#L-566"><span class="linenos">566</span></a>    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
+</span><span id="L-567"><a href="#L-567"><span class="linenos">567</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown openQCD version.&quot;</span><span class="p">)</span>
+</span><span id="L-568"><a href="#L-568"><span class="linenos">568</span></a>    <span class="k">if</span> <span class="s2">&quot;steps&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-569"><a href="#L-569"><span class="linenos">569</span></a>        <span class="n">steps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;steps&quot;</span><span class="p">)</span>
+</span><span id="L-570"><a href="#L-570"><span class="linenos">570</span></a>    <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">:</span>
+</span><span id="L-571"><a href="#L-571"><span class="linenos">571</span></a>        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-572"><a href="#L-572"><span class="linenos">572</span></a>            <span class="n">supposed_L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
+</span><span id="L-573"><a href="#L-573"><span class="linenos">573</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-574"><a href="#L-574"><span class="linenos">574</span></a>            <span class="n">supposed_L</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-575"><a href="#L-575"><span class="linenos">575</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.gfms.dat&quot;</span>
+</span><span id="L-576"><a href="#L-576"><span class="linenos">576</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-577"><a href="#L-577"><span class="linenos">577</span></a>        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-578"><a href="#L-578"><span class="linenos">578</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version of openQCD needs you to provide the spatial length of the lattice as parameter &#39;L&#39;.&quot;</span><span class="p">)</span>
+</span><span id="L-579"><a href="#L-579"><span class="linenos">579</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-580"><a href="#L-580"><span class="linenos">580</span></a>            <span class="n">L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
+</span><span id="L-581"><a href="#L-581"><span class="linenos">581</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.ms.dat&quot;</span>
+</span><span id="L-582"><a href="#L-582"><span class="linenos">582</span></a>
+</span><span id="L-583"><a href="#L-583"><span class="linenos">583</span></a>    <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-584"><a href="#L-584"><span class="linenos">584</span></a>        <span class="n">files</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
+</span><span id="L-585"><a href="#L-585"><span class="linenos">585</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="L-586"><a href="#L-586"><span class="linenos">586</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-587"><a href="#L-587"><span class="linenos">587</span></a>        <span class="n">found</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-588"><a href="#L-588"><span class="linenos">588</span></a>        <span class="n">files</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-589"><a href="#L-589"><span class="linenos">589</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span><span class="p">):</span>
+</span><span id="L-590"><a href="#L-590"><span class="linenos">590</span></a>            <span class="n">found</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="L-591"><a href="#L-591"><span class="linenos">591</span></a>            <span class="k">break</span>
+</span><span id="L-592"><a href="#L-592"><span class="linenos">592</span></a>        <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">found</span><span class="p">:</span>
+</span><span id="L-593"><a href="#L-593"><span class="linenos">593</span></a>            <span class="k">if</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s2">&quot;*&quot;</span> <span class="o">+</span> <span class="n">postfix</span><span class="p">):</span>
+</span><span id="L-594"><a href="#L-594"><span class="linenos">594</span></a>                <span class="n">files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+</span><span id="L-595"><a href="#L-595"><span class="linenos">595</span></a>
+</span><span id="L-596"><a href="#L-596"><span class="linenos">596</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-597"><a href="#L-597"><span class="linenos">597</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="L-598"><a href="#L-598"><span class="linenos">598</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
+</span><span id="L-599"><a href="#L-599"><span class="linenos">599</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-600"><a href="#L-600"><span class="linenos">600</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="L-601"><a href="#L-601"><span class="linenos">601</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-602"><a href="#L-602"><span class="linenos">602</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
+</span><span id="L-603"><a href="#L-603"><span class="linenos">603</span></a>
+</span><span id="L-604"><a href="#L-604"><span class="linenos">604</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-605"><a href="#L-605"><span class="linenos">605</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="L-606"><a href="#L-606"><span class="linenos">606</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
+</span><span id="L-607"><a href="#L-607"><span class="linenos">607</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="L-608"><a href="#L-608"><span class="linenos">608</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-609"><a href="#L-609"><span class="linenos">609</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
+</span><span id="L-610"><a href="#L-610"><span class="linenos">610</span></a>    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-611"><a href="#L-611"><span class="linenos">611</span></a>
+</span><span id="L-612"><a href="#L-612"><span class="linenos">612</span></a>    <span class="n">zeuthen</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;Zeuthen_flow&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
+</span><span id="L-613"><a href="#L-613"><span class="linenos">613</span></a>    <span class="k">if</span> <span class="n">zeuthen</span> <span class="ow">and</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="L-614"><a href="#L-614"><span class="linenos">614</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Zeuthen flow can only be used for version==sfqcd&#39;</span><span class="p">)</span>
+</span><span id="L-615"><a href="#L-615"><span class="linenos">615</span></a>
+</span><span id="L-616"><a href="#L-616"><span class="linenos">616</span></a>    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-617"><a href="#L-617"><span class="linenos">617</span></a>    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-618"><a href="#L-618"><span class="linenos">618</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-619"><a href="#L-619"><span class="linenos">619</span></a>    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-620"><a href="#L-620"><span class="linenos">620</span></a>    <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
+</span><span id="L-621"><a href="#L-621"><span class="linenos">621</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="L-622"><a href="#L-622"><span class="linenos">622</span></a>
+</span><span id="L-623"><a href="#L-623"><span class="linenos">623</span></a>            <span class="n">Q</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-624"><a href="#L-624"><span class="linenos">624</span></a>            <span class="n">traj_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-625"><a href="#L-625"><span class="linenos">625</span></a>            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="L-626"><a href="#L-626"><span class="linenos">626</span></a>                <span class="k">if</span> <span class="n">zeuthen</span><span class="p">:</span>
+</span><span id="L-627"><a href="#L-627"><span class="linenos">627</span></a>                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-628"><a href="#L-628"><span class="linenos">628</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-629"><a href="#L-629"><span class="linenos">629</span></a>                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">8</span>
+</span><span id="L-630"><a href="#L-630"><span class="linenos">630</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="L-631"><a href="#L-631"><span class="linenos">631</span></a>                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-632"><a href="#L-632"><span class="linenos">632</span></a>                <span class="n">zthfl</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>  <span class="c1"># Zeuthen flow -&gt; if it&#39;s equal to 2 it means that the Zeuthen flow is also &#39;measured&#39; (apart from the Wilson flow)</span>
+</span><span id="L-633"><a href="#L-633"><span class="linenos">633</span></a>                <span class="n">ncs</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># number of different values for c in t_flow=1/8 c² L² -&gt; measurements done for ncs c&#39;s</span>
+</span><span id="L-634"><a href="#L-634"><span class="linenos">634</span></a>                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>  <span class="c1"># lattice T/a</span>
+</span><span id="L-635"><a href="#L-635"><span class="linenos">635</span></a>
+</span><span id="L-636"><a href="#L-636"><span class="linenos">636</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="L-637"><a href="#L-637"><span class="linenos">637</span></a>                <span class="n">Ls</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-638"><a href="#L-638"><span class="linenos">638</span></a>                <span class="k">if</span><span class="p">(</span><span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">and</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">2</span><span class="p">]):</span>
+</span><span id="L-639"><a href="#L-639"><span class="linenos">639</span></a>                    <span class="n">L</span> <span class="o">=</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-640"><a href="#L-640"><span class="linenos">640</span></a>                    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">supposed_L</span> <span class="o">==</span> <span class="n">L</span><span class="p">)</span> <span class="ow">and</span> <span class="n">supposed_L</span><span class="p">:</span>
+</span><span id="L-641"><a href="#L-641"><span class="linenos">641</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It seems the length given in the header and by you contradict each other&quot;</span><span class="p">)</span>
+</span><span id="L-642"><a href="#L-642"><span class="linenos">642</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-643"><a href="#L-643"><span class="linenos">643</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Found more than one spatial length in header!&quot;</span><span class="p">)</span>
+</span><span id="L-644"><a href="#L-644"><span class="linenos">644</span></a>
+</span><span id="L-645"><a href="#L-645"><span class="linenos">645</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">16</span><span class="p">)</span>
+</span><span id="L-646"><a href="#L-646"><span class="linenos">646</span></a>                <span class="n">header2</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;dd&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-647"><a href="#L-647"><span class="linenos">647</span></a>                <span class="n">tol</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-648"><a href="#L-648"><span class="linenos">648</span></a>                <span class="n">cmax</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># highest value of c used</span>
+</span><span id="L-649"><a href="#L-649"><span class="linenos">649</span></a>
+</span><span id="L-650"><a href="#L-650"><span class="linenos">650</span></a>                <span class="k">if</span> <span class="n">c</span> <span class="o">&gt;</span> <span class="n">cmax</span><span class="p">:</span>
+</span><span id="L-651"><a href="#L-651"><span class="linenos">651</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Flow has been determined between c=0 and c=</span><span class="si">%lf</span><span class="s1"> with tolerance </span><span class="si">%lf</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">cmax</span><span class="p">,</span> <span class="n">tol</span><span class="p">))</span>
+</span><span id="L-652"><a href="#L-652"><span class="linenos">652</span></a>
+</span><span id="L-653"><a href="#L-653"><span class="linenos">653</span></a>                <span class="k">if</span><span class="p">(</span><span class="n">zthfl</span> <span class="o">==</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="L-654"><a href="#L-654"><span class="linenos">654</span></a>                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">2</span>  <span class="c1"># number of flows</span>
+</span><span id="L-655"><a href="#L-655"><span class="linenos">655</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-656"><a href="#L-656"><span class="linenos">656</span></a>                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-657"><a href="#L-657"><span class="linenos">657</span></a>                <span class="n">iobs</span> <span class="o">=</span> <span class="mi">8</span> <span class="o">*</span> <span class="n">nfl</span>  <span class="c1"># number of flow observables calculated</span>
+</span><span id="L-658"><a href="#L-658"><span class="linenos">658</span></a>
+</span><span id="L-659"><a href="#L-659"><span class="linenos">659</span></a>                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-660"><a href="#L-660"><span class="linenos">660</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-661"><a href="#L-661"><span class="linenos">661</span></a>                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="L-662"><a href="#L-662"><span class="linenos">662</span></a>                        <span class="k">break</span>
+</span><span id="L-663"><a href="#L-663"><span class="linenos">663</span></a>                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>   <span class="c1"># trajectory number when measurement was done</span>
+</span><span id="L-664"><a href="#L-664"><span class="linenos">664</span></a>
+</span><span id="L-665"><a href="#L-665"><span class="linenos">665</span></a>                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-666"><a href="#L-666"><span class="linenos">666</span></a>                        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">iobs</span><span class="p">):</span>
+</span><span id="L-667"><a href="#L-667"><span class="linenos">667</span></a>                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">)</span>
+</span><span id="L-668"><a href="#L-668"><span class="linenos">668</span></a>                            <span class="k">if</span> <span class="p">(</span><span class="n">i</span> <span class="o">==</span> <span class="n">obspos</span><span class="p">):</span>  <span class="c1"># determines the flow observable -&gt; i=0 &lt;-&gt; Zeuthen flow</span>
+</span><span id="L-669"><a href="#L-669"><span class="linenos">669</span></a>                                <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">,</span> <span class="n">t</span><span class="p">))</span>
+</span><span id="L-670"><a href="#L-670"><span class="linenos">670</span></a>
+</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a>                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a>                <span class="c1"># step size in integration steps &quot;dnms&quot;</span>
+</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a>                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a>                <span class="c1"># number of measurements, so &quot;ntot&quot;/dn</span>
+</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a>                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-678"><a href="#L-678"><span class="linenos">678</span></a>                <span class="c1"># lattice T/a</span>
+</span><span id="L-679"><a href="#L-679"><span class="linenos">679</span></a>                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="L-680"><a href="#L-680"><span class="linenos">680</span></a>
+</span><span id="L-681"><a href="#L-681"><span class="linenos">681</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
+</span><span id="L-682"><a href="#L-682"><span class="linenos">682</span></a>                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-683"><a href="#L-683"><span class="linenos">683</span></a>
+</span><span id="L-684"><a href="#L-684"><span class="linenos">684</span></a>                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-685"><a href="#L-685"><span class="linenos">685</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="L-686"><a href="#L-686"><span class="linenos">686</span></a>                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="L-687"><a href="#L-687"><span class="linenos">687</span></a>                        <span class="k">break</span>
+</span><span id="L-688"><a href="#L-688"><span class="linenos">688</span></a>                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-689"><a href="#L-689"><span class="linenos">689</span></a>                    <span class="c1"># Wsl</span>
+</span><span id="L-690"><a href="#L-690"><span class="linenos">690</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-691"><a href="#L-691"><span class="linenos">691</span></a>                    <span class="c1"># Ysl</span>
+</span><span id="L-692"><a href="#L-692"><span class="linenos">692</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-693"><a href="#L-693"><span class="linenos">693</span></a>                    <span class="c1"># Qsl, which is asked for in this method</span>
+</span><span id="L-694"><a href="#L-694"><span class="linenos">694</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-695"><a href="#L-695"><span class="linenos">695</span></a>                    <span class="c1"># unpack the array of Qtops,</span>
+</span><span id="L-696"><a href="#L-696"><span class="linenos">696</span></a>                    <span class="c1"># on each timeslice t=0,...,tmax-1 and the</span>
+</span><span id="L-697"><a href="#L-697"><span class="linenos">697</span></a>                    <span class="c1"># measurement number in = 0...nn (see README.qcd1)</span>
+</span><span id="L-698"><a href="#L-698"><span class="linenos">698</span></a>                    <span class="n">tmpd</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="L-699"><a href="#L-699"><span class="linenos">699</span></a>                    <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmpd</span><span class="p">)</span>
+</span><span id="L-700"><a href="#L-700"><span class="linenos">700</span></a>
+</span><span id="L-701"><a href="#L-701"><span class="linenos">701</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-702"><a href="#L-702"><span class="linenos">702</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in stepsize found&quot;</span><span class="p">)</span>
+</span><span id="L-703"><a href="#L-703"><span class="linenos">703</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-704"><a href="#L-704"><span class="linenos">704</span></a>            <span class="k">if</span> <span class="s1">&#39;steps&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-705"><a href="#L-705"><span class="linenos">705</span></a>                <span class="k">if</span> <span class="n">steps</span> <span class="o">!=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span>
+</span><span id="L-706"><a href="#L-706"><span class="linenos">706</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;steps and the found stepsize are not the same&quot;</span><span class="p">)</span>
+</span><span id="L-707"><a href="#L-707"><span class="linenos">707</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-708"><a href="#L-708"><span class="linenos">708</span></a>                <span class="n">steps</span> <span class="o">=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-709"><a href="#L-709"><span class="linenos">709</span></a>
+</span><span id="L-710"><a href="#L-710"><span class="linenos">710</span></a>        <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">tr</span> <span class="o">//</span> <span class="n">steps</span> <span class="o">//</span> <span class="n">dtr_cnfg</span> <span class="k">for</span> <span class="n">tr</span> <span class="ow">in</span> <span class="n">traj_list</span><span class="p">])</span>
+</span><span id="L-711"><a href="#L-711"><span class="linenos">711</span></a>        <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-712"><a href="#L-712"><span class="linenos">712</span></a>            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="L-713"><a href="#L-713"><span class="linenos">713</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config. Offset = </span><span class="si">%d</span><span class="s1"> configs (</span><span class="si">%d</span><span class="s1"> trajectories / cycles)&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="L-714"><a href="#L-714"><span class="linenos">714</span></a>                <span class="n">offset</span><span class="p">,</span> <span class="n">offset</span> <span class="o">*</span> <span class="n">steps</span><span class="p">))</span>
+</span><span id="L-715"><a href="#L-715"><span class="linenos">715</span></a>            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="L-716"><a href="#L-716"><span class="linenos">716</span></a>
+</span><span id="L-717"><a href="#L-717"><span class="linenos">717</span></a>        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-718"><a href="#L-718"><span class="linenos">718</span></a>            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="L-719"><a href="#L-719"><span class="linenos">719</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-720"><a href="#L-720"><span class="linenos">720</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="L-721"><a href="#L-721"><span class="linenos">721</span></a>                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="L-722"><a href="#L-722"><span class="linenos">722</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="L-723"><a href="#L-723"><span class="linenos">723</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="L-724"><a href="#L-724"><span class="linenos">724</span></a>                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-725"><a href="#L-725"><span class="linenos">725</span></a>
+</span><span id="L-726"><a href="#L-726"><span class="linenos">726</span></a>        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-727"><a href="#L-727"><span class="linenos">727</span></a>            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-728"><a href="#L-728"><span class="linenos">728</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-729"><a href="#L-729"><span class="linenos">729</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="L-730"><a href="#L-730"><span class="linenos">730</span></a>                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="L-731"><a href="#L-731"><span class="linenos">731</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="L-732"><a href="#L-732"><span class="linenos">732</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="L-733"><a href="#L-733"><span class="linenos">733</span></a>                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-734"><a href="#L-734"><span class="linenos">734</span></a>
+</span><span id="L-735"><a href="#L-735"><span class="linenos">735</span></a>        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="L-736"><a href="#L-736"><span class="linenos">736</span></a>            <span class="n">cstepsize</span> <span class="o">=</span> <span class="n">cmax</span> <span class="o">/</span> <span class="n">ncs</span>
+</span><span id="L-737"><a href="#L-737"><span class="linenos">737</span></a>            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">c</span> <span class="o">/</span> <span class="n">cstepsize</span><span class="p">)</span>
+</span><span id="L-738"><a href="#L-738"><span class="linenos">738</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-739"><a href="#L-739"><span class="linenos">739</span></a>            <span class="n">t_aim</span> <span class="o">=</span> <span class="p">(</span><span class="n">c</span> <span class="o">*</span> <span class="n">L</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="mi">8</span>
+</span><span id="L-740"><a href="#L-740"><span class="linenos">740</span></a>            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">t_aim</span> <span class="o">/</span> <span class="n">eps</span> <span class="o">/</span> <span class="n">dn</span><span class="p">)</span>
+</span><span id="L-741"><a href="#L-741"><span class="linenos">741</span></a>
+</span><span id="L-742"><a href="#L-742"><span class="linenos">742</span></a>        <span class="n">Q_sum</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-743"><a href="#L-743"><span class="linenos">743</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Q</span><span class="p">):</span>
+</span><span id="L-744"><a href="#L-744"><span class="linenos">744</span></a>            <span class="n">Q_sum</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">sum</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span><span class="p">:</span><span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span><span class="p">])</span>
+</span><span id="L-745"><a href="#L-745"><span class="linenos">745</span></a>                         <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
+</span><span id="L-746"><a href="#L-746"><span class="linenos">746</span></a>        <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-747"><a href="#L-747"><span class="linenos">747</span></a>        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="L-748"><a href="#L-748"><span class="linenos">748</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">)</span> <span class="o">//</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)):</span>
+</span><span id="L-749"><a href="#L-749"><span class="linenos">749</span></a>                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">i</span> <span class="o">*</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="n">index_aim</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-750"><a href="#L-750"><span class="linenos">750</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-751"><a href="#L-751"><span class="linenos">751</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">):</span>
+</span><span id="L-752"><a href="#L-752"><span class="linenos">752</span></a>                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">dtr_cnfg</span> <span class="o">*</span> <span class="n">i</span><span class="p">][</span><span class="n">index_aim</span><span class="p">])</span>
+</span><span id="L-753"><a href="#L-753"><span class="linenos">753</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">:</span>
+</span><span id="L-754"><a href="#L-754"><span class="linenos">754</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;qtops and traj_list dont have the same length&quot;</span><span class="p">)</span>
+</span><span id="L-755"><a href="#L-755"><span class="linenos">755</span></a>
+</span><span id="L-756"><a href="#L-756"><span class="linenos">756</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
+</span><span id="L-757"><a href="#L-757"><span class="linenos">757</span></a>            <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[</span><span class="nb">round</span><span class="p">(</span><span class="n">q</span><span class="p">)</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">Q_top</span><span class="p">]</span>
+</span><span id="L-758"><a href="#L-758"><span class="linenos">758</span></a>
+</span><span id="L-759"><a href="#L-759"><span class="linenos">759</span></a>        <span class="n">truncated_file</span> <span class="o">=</span> <span class="n">file</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">postfix</span><span class="p">)]</span>
+</span><span id="L-760"><a href="#L-760"><span class="linenos">760</span></a>
+</span><span id="L-761"><a href="#L-761"><span class="linenos">761</span></a>        <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-762"><a href="#L-762"><span class="linenos">762</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="L-763"><a href="#L-763"><span class="linenos">763</span></a>                <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="L-764"><a href="#L-764"><span class="linenos">764</span></a>            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-765"><a href="#L-765"><span class="linenos">765</span></a>                <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-766"><a href="#L-766"><span class="linenos">766</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
+</span><span id="L-767"><a href="#L-767"><span class="linenos">767</span></a>            <span class="n">ens_name</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span>
+</span><span id="L-768"><a href="#L-768"><span class="linenos">768</span></a>            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ens_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_file</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-769"><a href="#L-769"><span class="linenos">769</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-770"><a href="#L-770"><span class="linenos">770</span></a>            <span class="n">names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;names&quot;</span><span class="p">)</span>
+</span><span id="L-771"><a href="#L-771"><span class="linenos">771</span></a>            <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
+</span><span id="L-772"><a href="#L-772"><span class="linenos">772</span></a>        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span>
+</span><span id="L-773"><a href="#L-773"><span class="linenos">773</span></a>
+</span><span id="L-774"><a href="#L-774"><span class="linenos">774</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]),</span> <span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
+</span><span id="L-775"><a href="#L-775"><span class="linenos">775</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">deltas</span><span class="p">[</span><span class="n">nrep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">nrep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
+</span><span id="L-776"><a href="#L-776"><span class="linenos">776</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
+</span><span id="L-777"><a href="#L-777"><span class="linenos">777</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span><span id="L-778"><a href="#L-778"><span class="linenos">778</span></a>
+</span><span id="L-779"><a href="#L-779"><span class="linenos">779</span></a>
+</span><span id="L-780"><a href="#L-780"><span class="linenos">780</span></a><span class="k">def</span> <span class="nf">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
+</span><span id="L-781"><a href="#L-781"><span class="linenos">781</span></a>    <span class="sd">&quot;&quot;&quot;Returns the projection to the topological charge sector defined by target.</span>
+</span><span id="L-782"><a href="#L-782"><span class="linenos">782</span></a>
+</span><span id="L-783"><a href="#L-783"><span class="linenos">783</span></a><span class="sd">    Parameters</span>
+</span><span id="L-784"><a href="#L-784"><span class="linenos">784</span></a><span class="sd">    ----------</span>
+</span><span id="L-785"><a href="#L-785"><span class="linenos">785</span></a><span class="sd">    path : Obs</span>
+</span><span id="L-786"><a href="#L-786"><span class="linenos">786</span></a><span class="sd">        Topological charge.</span>
+</span><span id="L-787"><a href="#L-787"><span class="linenos">787</span></a><span class="sd">    target : int</span>
+</span><span id="L-788"><a href="#L-788"><span class="linenos">788</span></a><span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
+</span><span id="L-789"><a href="#L-789"><span class="linenos">789</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-790"><a href="#L-790"><span class="linenos">790</span></a>    <span class="k">if</span> <span class="n">qtop</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="L-791"><a href="#L-791"><span class="linenos">791</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You can not use a reweighted observable for reweighting!&#39;</span><span class="p">)</span>
+</span><span id="L-792"><a href="#L-792"><span class="linenos">792</span></a>
+</span><span id="L-793"><a href="#L-793"><span class="linenos">793</span></a>    <span class="n">proj_qtop</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-794"><a href="#L-794"><span class="linenos">794</span></a>    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
+</span><span id="L-795"><a href="#L-795"><span class="linenos">795</span></a>        <span class="n">proj_qtop</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mi">1</span> <span class="k">if</span> <span class="nb">round</span><span class="p">(</span><span class="n">qtop</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">q</span><span class="p">)</span> <span class="o">==</span> <span class="n">target</span> <span class="k">else</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">]]))</span>
+</span><span id="L-796"><a href="#L-796"><span class="linenos">796</span></a>
+</span><span id="L-797"><a href="#L-797"><span class="linenos">797</span></a>    <span class="n">reto</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">proj_qtop</span><span class="p">,</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">qtop</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">])</span>
+</span><span id="L-798"><a href="#L-798"><span class="linenos">798</span></a>    <span class="n">reto</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">qtop</span><span class="o">.</span><span class="n">is_merged</span>
+</span><span id="L-799"><a href="#L-799"><span class="linenos">799</span></a>    <span class="k">return</span> <span class="n">reto</span>
+</span><span id="L-800"><a href="#L-800"><span class="linenos">800</span></a>
+</span><span id="L-801"><a href="#L-801"><span class="linenos">801</span></a>
+</span><span id="L-802"><a href="#L-802"><span class="linenos">802</span></a><span class="k">def</span> <span class="nf">read_qtop_sector</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-803"><a href="#L-803"><span class="linenos">803</span></a>    <span class="sd">&quot;&quot;&quot;Constructs reweighting factors to a specified topological sector.</span>
+</span><span id="L-804"><a href="#L-804"><span class="linenos">804</span></a>
+</span><span id="L-805"><a href="#L-805"><span class="linenos">805</span></a><span class="sd">    Parameters</span>
+</span><span id="L-806"><a href="#L-806"><span class="linenos">806</span></a><span class="sd">    ----------</span>
+</span><span id="L-807"><a href="#L-807"><span class="linenos">807</span></a><span class="sd">    path : str</span>
+</span><span id="L-808"><a href="#L-808"><span class="linenos">808</span></a><span class="sd">        path of the measurement files</span>
+</span><span id="L-809"><a href="#L-809"><span class="linenos">809</span></a><span class="sd">    prefix : str</span>
+</span><span id="L-810"><a href="#L-810"><span class="linenos">810</span></a><span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat</span>
+</span><span id="L-811"><a href="#L-811"><span class="linenos">811</span></a><span class="sd">    c : double</span>
+</span><span id="L-812"><a href="#L-812"><span class="linenos">812</span></a><span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L</span>
+</span><span id="L-813"><a href="#L-813"><span class="linenos">813</span></a><span class="sd">    target : int</span>
+</span><span id="L-814"><a href="#L-814"><span class="linenos">814</span></a><span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
+</span><span id="L-815"><a href="#L-815"><span class="linenos">815</span></a><span class="sd">    dtr_cnfg : int</span>
+</span><span id="L-816"><a href="#L-816"><span class="linenos">816</span></a><span class="sd">        (optional) parameter that specifies the number of trajectories</span>
+</span><span id="L-817"><a href="#L-817"><span class="linenos">817</span></a><span class="sd">        between two configs.</span>
+</span><span id="L-818"><a href="#L-818"><span class="linenos">818</span></a><span class="sd">        if it is not set, the distance between two measurements</span>
+</span><span id="L-819"><a href="#L-819"><span class="linenos">819</span></a><span class="sd">        in the file is assumed to be the distance between two configurations.</span>
+</span><span id="L-820"><a href="#L-820"><span class="linenos">820</span></a><span class="sd">    steps : int</span>
+</span><span id="L-821"><a href="#L-821"><span class="linenos">821</span></a><span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
+</span><span id="L-822"><a href="#L-822"><span class="linenos">822</span></a><span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
+</span><span id="L-823"><a href="#L-823"><span class="linenos">823</span></a><span class="sd">    version : str</span>
+</span><span id="L-824"><a href="#L-824"><span class="linenos">824</span></a><span class="sd">        version string of the openQCD (sfqcd) version used to create</span>
+</span><span id="L-825"><a href="#L-825"><span class="linenos">825</span></a><span class="sd">        the ensemble. Default is 2.0. May also be set to sfqcd.</span>
+</span><span id="L-826"><a href="#L-826"><span class="linenos">826</span></a><span class="sd">    L : int</span>
+</span><span id="L-827"><a href="#L-827"><span class="linenos">827</span></a><span class="sd">        spatial length of the lattice in L/a.</span>
+</span><span id="L-828"><a href="#L-828"><span class="linenos">828</span></a><span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
+</span><span id="L-829"><a href="#L-829"><span class="linenos">829</span></a><span class="sd">        this in the header</span>
+</span><span id="L-830"><a href="#L-830"><span class="linenos">830</span></a><span class="sd">    r_start : list</span>
+</span><span id="L-831"><a href="#L-831"><span class="linenos">831</span></a><span class="sd">        offset of the first ensemble, making it easier to match</span>
+</span><span id="L-832"><a href="#L-832"><span class="linenos">832</span></a><span class="sd">        later on with other Obs</span>
+</span><span id="L-833"><a href="#L-833"><span class="linenos">833</span></a><span class="sd">    r_stop : list</span>
+</span><span id="L-834"><a href="#L-834"><span class="linenos">834</span></a><span class="sd">        last configurations that need to be read (per replicum)</span>
+</span><span id="L-835"><a href="#L-835"><span class="linenos">835</span></a><span class="sd">    files : list</span>
+</span><span id="L-836"><a href="#L-836"><span class="linenos">836</span></a><span class="sd">        specify the exact files that need to be read</span>
+</span><span id="L-837"><a href="#L-837"><span class="linenos">837</span></a><span class="sd">        from path, practical if e.g. only one replicum is needed</span>
+</span><span id="L-838"><a href="#L-838"><span class="linenos">838</span></a><span class="sd">    names : list</span>
+</span><span id="L-839"><a href="#L-839"><span class="linenos">839</span></a><span class="sd">        Alternative labeling for replicas/ensembles.</span>
+</span><span id="L-840"><a href="#L-840"><span class="linenos">840</span></a><span class="sd">        Has to have the appropriate length</span>
+</span><span id="L-841"><a href="#L-841"><span class="linenos">841</span></a><span class="sd">    Zeuthen_flow : bool</span>
+</span><span id="L-842"><a href="#L-842"><span class="linenos">842</span></a><span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
+</span><span id="L-843"><a href="#L-843"><span class="linenos">843</span></a><span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
+</span><span id="L-844"><a href="#L-844"><span class="linenos">844</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-845"><a href="#L-845"><span class="linenos">845</span></a>
+</span><span id="L-846"><a href="#L-846"><span class="linenos">846</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+</span><span id="L-847"><a href="#L-847"><span class="linenos">847</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;target&#39; has to be an integer.&quot;</span><span class="p">)</span>
+</span><span id="L-848"><a href="#L-848"><span class="linenos">848</span></a>
+</span><span id="L-849"><a href="#L-849"><span class="linenos">849</span></a>    <span class="n">kwargs</span><span class="p">[</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-850"><a href="#L-850"><span class="linenos">850</span></a>    <span class="n">qtop</span> <span class="o">=</span> <span class="n">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-851"><a href="#L-851"><span class="linenos">851</span></a>
+</span><span id="L-852"><a href="#L-852"><span class="linenos">852</span></a>    <span class="k">return</span> <span class="n">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="n">target</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -949,224 +949,224 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_rwms</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s1">&#39;2.0&#39;</span><span class="p">,</span> <span class="n">names</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read rwms format from given folder structure. Returns a list of length nrw</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path that contains the data files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        all files in path that start with prefix are considered as input files.</span>
-<span class="sd">        May be used together postfix to consider only special file endings.</span>
-<span class="sd">        Prefix is ignored, if the keyword &#39;files&#39; is used.</span>
-<span class="sd">    version : str</span>
-<span class="sd">        version of openQCD, default 2.0</span>
-<span class="sd">    names : list</span>
-<span class="sd">        list of names that is assigned to the data according according</span>
-<span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum</span>
-<span class="sd">    r_step : int</span>
-<span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
-<span class="sd">        If not given, r_step=1 is assumed.</span>
-<span class="sd">    postfix : str</span>
-<span class="sd">        postfix of the file to read, e.g. &#39;.ms1&#39; for openQCD-files</span>
-<span class="sd">    files : list</span>
-<span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
-<span class="sd">        files performed if given.</span>
-<span class="sd">    print_err : bool</span>
-<span class="sd">        Print additional information that is useful for debugging.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">known_oqcd_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;1.4&#39;</span><span class="p">,</span> <span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">version</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown openQCD version defined!&#39;</span><span class="p">)</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Working with openQCD version &quot;</span> <span class="o">+</span> <span class="n">version</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;postfix&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;postfix&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-        <span class="k">break</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span> <span class="o">+</span> <span class="n">postfix</span> <span class="o">+</span> <span class="s1">&#39;.dat&#39;</span><span class="p">):</span>
-                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read reweighting factors from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span>
-          <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">names</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span>
-            <span class="n">suffixes</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.dat&quot;</span><span class="p">,</span> <span class="s2">&quot;.rwms&quot;</span><span class="p">,</span> <span class="s2">&quot;.ms1&quot;</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">suffix</span> <span class="ow">in</span> <span class="n">suffixes</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="n">suffix</span><span class="p">):</span>
-                    <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">suffix</span><span class="p">)]</span>
-            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
-
-    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="nb">print</span><span class="p">()</span>
-
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
-        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
-                    <span class="n">nrw</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nrw</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="p">((</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">and</span> <span class="p">(</span><span class="ow">not</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">))</span> <span class="ow">or</span> <span class="p">(</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">)):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of reweighting factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-            <span class="c1"># This block is necessary for openQCD1.6 and openQCD2.0 ms1 files</span>
-            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
-
-            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">))[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;something is wrong!&#39;</span><span class="p">)</span>
-
-            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
-                    <span class="k">break</span>
-                <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">config_no</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                    <span class="k">if</span><span class="p">(</span><span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">):</span>
-                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
-                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
-                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;arr&#39;</span><span class="p">]</span>
-                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;n&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]):</span>
-                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
-                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))),</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
-                    <span class="k">elif</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.6&#39;</span> <span class="ow">or</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.4&#39;</span><span class="p">:</span>
-                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
-                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
-                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-                            <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
-                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
-                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))),</span>
-                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
-                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
-                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
-
-            <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
-            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-            <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">diffmeas</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
-                <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
-                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-
-            <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                        <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-            <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                        <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">])</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
-    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="s1">&#39;reweighting factors with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
-
-    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_rwms-13"><a href="#read_rwms-13"><span class="linenos"> 13</span></a><span class="k">def</span> <span class="nf">read_rwms</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s1">&#39;2.0&#39;</span><span class="p">,</span> <span class="n">names</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_rwms-14"><a href="#read_rwms-14"><span class="linenos"> 14</span></a>    <span class="sd">&quot;&quot;&quot;Read rwms format from given folder structure. Returns a list of length nrw</span>
+</span><span id="read_rwms-15"><a href="#read_rwms-15"><span class="linenos"> 15</span></a>
+</span><span id="read_rwms-16"><a href="#read_rwms-16"><span class="linenos"> 16</span></a><span class="sd">    Parameters</span>
+</span><span id="read_rwms-17"><a href="#read_rwms-17"><span class="linenos"> 17</span></a><span class="sd">    ----------</span>
+</span><span id="read_rwms-18"><a href="#read_rwms-18"><span class="linenos"> 18</span></a><span class="sd">    path : str</span>
+</span><span id="read_rwms-19"><a href="#read_rwms-19"><span class="linenos"> 19</span></a><span class="sd">        path that contains the data files</span>
+</span><span id="read_rwms-20"><a href="#read_rwms-20"><span class="linenos"> 20</span></a><span class="sd">    prefix : str</span>
+</span><span id="read_rwms-21"><a href="#read_rwms-21"><span class="linenos"> 21</span></a><span class="sd">        all files in path that start with prefix are considered as input files.</span>
+</span><span id="read_rwms-22"><a href="#read_rwms-22"><span class="linenos"> 22</span></a><span class="sd">        May be used together postfix to consider only special file endings.</span>
+</span><span id="read_rwms-23"><a href="#read_rwms-23"><span class="linenos"> 23</span></a><span class="sd">        Prefix is ignored, if the keyword &#39;files&#39; is used.</span>
+</span><span id="read_rwms-24"><a href="#read_rwms-24"><span class="linenos"> 24</span></a><span class="sd">    version : str</span>
+</span><span id="read_rwms-25"><a href="#read_rwms-25"><span class="linenos"> 25</span></a><span class="sd">        version of openQCD, default 2.0</span>
+</span><span id="read_rwms-26"><a href="#read_rwms-26"><span class="linenos"> 26</span></a><span class="sd">    names : list</span>
+</span><span id="read_rwms-27"><a href="#read_rwms-27"><span class="linenos"> 27</span></a><span class="sd">        list of names that is assigned to the data according according</span>
+</span><span id="read_rwms-28"><a href="#read_rwms-28"><span class="linenos"> 28</span></a><span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
+</span><span id="read_rwms-29"><a href="#read_rwms-29"><span class="linenos"> 29</span></a><span class="sd">    r_start : list</span>
+</span><span id="read_rwms-30"><a href="#read_rwms-30"><span class="linenos"> 30</span></a><span class="sd">        list which contains the first config to be read for each replicum</span>
+</span><span id="read_rwms-31"><a href="#read_rwms-31"><span class="linenos"> 31</span></a><span class="sd">    r_stop : list</span>
+</span><span id="read_rwms-32"><a href="#read_rwms-32"><span class="linenos"> 32</span></a><span class="sd">        list which contains the last config to be read for each replicum</span>
+</span><span id="read_rwms-33"><a href="#read_rwms-33"><span class="linenos"> 33</span></a><span class="sd">    r_step : int</span>
+</span><span id="read_rwms-34"><a href="#read_rwms-34"><span class="linenos"> 34</span></a><span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
+</span><span id="read_rwms-35"><a href="#read_rwms-35"><span class="linenos"> 35</span></a><span class="sd">        If not given, r_step=1 is assumed.</span>
+</span><span id="read_rwms-36"><a href="#read_rwms-36"><span class="linenos"> 36</span></a><span class="sd">    postfix : str</span>
+</span><span id="read_rwms-37"><a href="#read_rwms-37"><span class="linenos"> 37</span></a><span class="sd">        postfix of the file to read, e.g. &#39;.ms1&#39; for openQCD-files</span>
+</span><span id="read_rwms-38"><a href="#read_rwms-38"><span class="linenos"> 38</span></a><span class="sd">    files : list</span>
+</span><span id="read_rwms-39"><a href="#read_rwms-39"><span class="linenos"> 39</span></a><span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
+</span><span id="read_rwms-40"><a href="#read_rwms-40"><span class="linenos"> 40</span></a><span class="sd">        files performed if given.</span>
+</span><span id="read_rwms-41"><a href="#read_rwms-41"><span class="linenos"> 41</span></a><span class="sd">    print_err : bool</span>
+</span><span id="read_rwms-42"><a href="#read_rwms-42"><span class="linenos"> 42</span></a><span class="sd">        Print additional information that is useful for debugging.</span>
+</span><span id="read_rwms-43"><a href="#read_rwms-43"><span class="linenos"> 43</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_rwms-44"><a href="#read_rwms-44"><span class="linenos"> 44</span></a>    <span class="n">known_oqcd_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;1.4&#39;</span><span class="p">,</span> <span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]</span>
+</span><span id="read_rwms-45"><a href="#read_rwms-45"><span class="linenos"> 45</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">version</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">):</span>
+</span><span id="read_rwms-46"><a href="#read_rwms-46"><span class="linenos"> 46</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Unknown openQCD version defined!&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-47"><a href="#read_rwms-47"><span class="linenos"> 47</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Working with openQCD version &quot;</span> <span class="o">+</span> <span class="n">version</span><span class="p">)</span>
+</span><span id="read_rwms-48"><a href="#read_rwms-48"><span class="linenos"> 48</span></a>    <span class="k">if</span> <span class="s1">&#39;postfix&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_rwms-49"><a href="#read_rwms-49"><span class="linenos"> 49</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;postfix&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-50"><a href="#read_rwms-50"><span class="linenos"> 50</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-51"><a href="#read_rwms-51"><span class="linenos"> 51</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="read_rwms-52"><a href="#read_rwms-52"><span class="linenos"> 52</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-53"><a href="#read_rwms-53"><span class="linenos"> 53</span></a>    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="read_rwms-54"><a href="#read_rwms-54"><span class="linenos"> 54</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="read_rwms-55"><a href="#read_rwms-55"><span class="linenos"> 55</span></a>        <span class="k">break</span>
+</span><span id="read_rwms-56"><a href="#read_rwms-56"><span class="linenos"> 56</span></a>
+</span><span id="read_rwms-57"><a href="#read_rwms-57"><span class="linenos"> 57</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_rwms-58"><a href="#read_rwms-58"><span class="linenos"> 58</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-59"><a href="#read_rwms-59"><span class="linenos"> 59</span></a>    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_rwms-60"><a href="#read_rwms-60"><span class="linenos"> 60</span></a>        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-61"><a href="#read_rwms-61"><span class="linenos"> 61</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-62"><a href="#read_rwms-62"><span class="linenos"> 62</span></a>        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_rwms-63"><a href="#read_rwms-63"><span class="linenos"> 63</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span> <span class="o">+</span> <span class="n">postfix</span> <span class="o">+</span> <span class="s1">&#39;.dat&#39;</span><span class="p">):</span>
+</span><span id="read_rwms-64"><a href="#read_rwms-64"><span class="linenos"> 64</span></a>                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="read_rwms-65"><a href="#read_rwms-65"><span class="linenos"> 65</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_rwms-66"><a href="#read_rwms-66"><span class="linenos"> 66</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="read_rwms-67"><a href="#read_rwms-67"><span class="linenos"> 67</span></a>    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="read_rwms-68"><a href="#read_rwms-68"><span class="linenos"> 68</span></a>
+</span><span id="read_rwms-69"><a href="#read_rwms-69"><span class="linenos"> 69</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_rwms-70"><a href="#read_rwms-70"><span class="linenos"> 70</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-71"><a href="#read_rwms-71"><span class="linenos"> 71</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="read_rwms-72"><a href="#read_rwms-72"><span class="linenos"> 72</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-73"><a href="#read_rwms-73"><span class="linenos"> 73</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="read_rwms-74"><a href="#read_rwms-74"><span class="linenos"> 74</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-75"><a href="#read_rwms-75"><span class="linenos"> 75</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="read_rwms-76"><a href="#read_rwms-76"><span class="linenos"> 76</span></a>
+</span><span id="read_rwms-77"><a href="#read_rwms-77"><span class="linenos"> 77</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_rwms-78"><a href="#read_rwms-78"><span class="linenos"> 78</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-79"><a href="#read_rwms-79"><span class="linenos"> 79</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="read_rwms-80"><a href="#read_rwms-80"><span class="linenos"> 80</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-81"><a href="#read_rwms-81"><span class="linenos"> 81</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-82"><a href="#read_rwms-82"><span class="linenos"> 82</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="read_rwms-83"><a href="#read_rwms-83"><span class="linenos"> 83</span></a>
+</span><span id="read_rwms-84"><a href="#read_rwms-84"><span class="linenos"> 84</span></a>    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_rwms-85"><a href="#read_rwms-85"><span class="linenos"> 85</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-86"><a href="#read_rwms-86"><span class="linenos"> 86</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-87"><a href="#read_rwms-87"><span class="linenos"> 87</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_rwms-88"><a href="#read_rwms-88"><span class="linenos"> 88</span></a>
+</span><span id="read_rwms-89"><a href="#read_rwms-89"><span class="linenos"> 89</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read reweighting factors from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span>
+</span><span id="read_rwms-90"><a href="#read_rwms-90"><span class="linenos"> 90</span></a>          <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">,</span> <span class="n">end</span><span class="o">=</span><span class="s1">&#39;&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-91"><a href="#read_rwms-91"><span class="linenos"> 91</span></a>
+</span><span id="read_rwms-92"><a href="#read_rwms-92"><span class="linenos"> 92</span></a>    <span class="k">if</span> <span class="n">names</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_rwms-93"><a href="#read_rwms-93"><span class="linenos"> 93</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-94"><a href="#read_rwms-94"><span class="linenos"> 94</span></a>        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_rwms-95"><a href="#read_rwms-95"><span class="linenos"> 95</span></a>            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span>
+</span><span id="read_rwms-96"><a href="#read_rwms-96"><span class="linenos"> 96</span></a>            <span class="n">suffixes</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;.dat&quot;</span><span class="p">,</span> <span class="s2">&quot;.rwms&quot;</span><span class="p">,</span> <span class="s2">&quot;.ms1&quot;</span><span class="p">]</span>
+</span><span id="read_rwms-97"><a href="#read_rwms-97"><span class="linenos"> 97</span></a>            <span class="k">for</span> <span class="n">suffix</span> <span class="ow">in</span> <span class="n">suffixes</span><span class="p">:</span>
+</span><span id="read_rwms-98"><a href="#read_rwms-98"><span class="linenos"> 98</span></a>                <span class="k">if</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="n">suffix</span><span class="p">):</span>
+</span><span id="read_rwms-99"><a href="#read_rwms-99"><span class="linenos"> 99</span></a>                    <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">suffix</span><span class="p">)]</span>
+</span><span id="read_rwms-100"><a href="#read_rwms-100"><span class="linenos">100</span></a>            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-101"><a href="#read_rwms-101"><span class="linenos">101</span></a>            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="read_rwms-102"><a href="#read_rwms-102"><span class="linenos">102</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-103"><a href="#read_rwms-103"><span class="linenos">103</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
+</span><span id="read_rwms-104"><a href="#read_rwms-104"><span class="linenos">104</span></a>
+</span><span id="read_rwms-105"><a href="#read_rwms-105"><span class="linenos">105</span></a>    <span class="n">print_err</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_rwms-106"><a href="#read_rwms-106"><span class="linenos">106</span></a>    <span class="k">if</span> <span class="s1">&#39;print_err&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_rwms-107"><a href="#read_rwms-107"><span class="linenos">107</span></a>        <span class="n">print_err</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_rwms-108"><a href="#read_rwms-108"><span class="linenos">108</span></a>        <span class="nb">print</span><span class="p">()</span>
+</span><span id="read_rwms-109"><a href="#read_rwms-109"><span class="linenos">109</span></a>
+</span><span id="read_rwms-110"><a href="#read_rwms-110"><span class="linenos">110</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-111"><a href="#read_rwms-111"><span class="linenos">111</span></a>
+</span><span id="read_rwms-112"><a href="#read_rwms-112"><span class="linenos">112</span></a>    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-113"><a href="#read_rwms-113"><span class="linenos">113</span></a>    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-114"><a href="#read_rwms-114"><span class="linenos">114</span></a>    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-115"><a href="#read_rwms-115"><span class="linenos">115</span></a>
+</span><span id="read_rwms-116"><a href="#read_rwms-116"><span class="linenos">116</span></a>    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
+</span><span id="read_rwms-117"><a href="#read_rwms-117"><span class="linenos">117</span></a>        <span class="n">tmp_array</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-118"><a href="#read_rwms-118"><span class="linenos">118</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="read_rwms-119"><a href="#read_rwms-119"><span class="linenos">119</span></a>
+</span><span id="read_rwms-120"><a href="#read_rwms-120"><span class="linenos">120</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>  <span class="c1"># number of reweighting factors</span>
+</span><span id="read_rwms-121"><a href="#read_rwms-121"><span class="linenos">121</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_rwms-122"><a href="#read_rwms-122"><span class="linenos">122</span></a>                <span class="n">nrw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_rwms-123"><a href="#read_rwms-123"><span class="linenos">123</span></a>                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
+</span><span id="read_rwms-124"><a href="#read_rwms-124"><span class="linenos">124</span></a>                    <span class="n">nrw</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">nrw</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="read_rwms-125"><a href="#read_rwms-125"><span class="linenos">125</span></a>                <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-126"><a href="#read_rwms-126"><span class="linenos">126</span></a>                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_rwms-127"><a href="#read_rwms-127"><span class="linenos">127</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-128"><a href="#read_rwms-128"><span class="linenos">128</span></a>                <span class="k">if</span> <span class="p">((</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">and</span> <span class="p">(</span><span class="ow">not</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">))</span> <span class="ow">or</span> <span class="p">(</span><span class="n">nrw</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mi">2</span> <span class="ow">and</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">)):</span>
+</span><span id="read_rwms-129"><a href="#read_rwms-129"><span class="linenos">129</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: different number of reweighting factors for replicum&#39;</span><span class="p">,</span> <span class="n">rep</span><span class="p">)</span>
+</span><span id="read_rwms-130"><a href="#read_rwms-130"><span class="linenos">130</span></a>
+</span><span id="read_rwms-131"><a href="#read_rwms-131"><span class="linenos">131</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-132"><a href="#read_rwms-132"><span class="linenos">132</span></a>                <span class="n">tmp_array</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_rwms-133"><a href="#read_rwms-133"><span class="linenos">133</span></a>
+</span><span id="read_rwms-134"><a href="#read_rwms-134"><span class="linenos">134</span></a>            <span class="c1"># This block is necessary for openQCD1.6 and openQCD2.0 ms1 files</span>
+</span><span id="read_rwms-135"><a href="#read_rwms-135"><span class="linenos">135</span></a>            <span class="n">nfct</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-136"><a href="#read_rwms-136"><span class="linenos">136</span></a>            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;1.6&#39;</span><span class="p">,</span> <span class="s1">&#39;2.0&#39;</span><span class="p">]:</span>
+</span><span id="read_rwms-137"><a href="#read_rwms-137"><span class="linenos">137</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-138"><a href="#read_rwms-138"><span class="linenos">138</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_rwms-139"><a href="#read_rwms-139"><span class="linenos">139</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="read_rwms-140"><a href="#read_rwms-140"><span class="linenos">140</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-141"><a href="#read_rwms-141"><span class="linenos">141</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-142"><a href="#read_rwms-142"><span class="linenos">142</span></a>                    <span class="n">nfct</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="read_rwms-143"><a href="#read_rwms-143"><span class="linenos">143</span></a>
+</span><span id="read_rwms-144"><a href="#read_rwms-144"><span class="linenos">144</span></a>            <span class="n">nsrc</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-145"><a href="#read_rwms-145"><span class="linenos">145</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-146"><a href="#read_rwms-146"><span class="linenos">146</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_rwms-147"><a href="#read_rwms-147"><span class="linenos">147</span></a>                <span class="n">nsrc</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="read_rwms-148"><a href="#read_rwms-148"><span class="linenos">148</span></a>            <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">:</span>
+</span><span id="read_rwms-149"><a href="#read_rwms-149"><span class="linenos">149</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">))[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_rwms-150"><a href="#read_rwms-150"><span class="linenos">150</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;something is wrong!&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-151"><a href="#read_rwms-151"><span class="linenos">151</span></a>
+</span><span id="read_rwms-152"><a href="#read_rwms-152"><span class="linenos">152</span></a>            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_rwms-153"><a href="#read_rwms-153"><span class="linenos">153</span></a>            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_rwms-154"><a href="#read_rwms-154"><span class="linenos">154</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_rwms-155"><a href="#read_rwms-155"><span class="linenos">155</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="read_rwms-156"><a href="#read_rwms-156"><span class="linenos">156</span></a>                    <span class="k">break</span>
+</span><span id="read_rwms-157"><a href="#read_rwms-157"><span class="linenos">157</span></a>                <span class="n">config_no</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_rwms-158"><a href="#read_rwms-158"><span class="linenos">158</span></a>                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">config_no</span><span class="p">)</span>
+</span><span id="read_rwms-159"><a href="#read_rwms-159"><span class="linenos">159</span></a>                <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-160"><a href="#read_rwms-160"><span class="linenos">160</span></a>                    <span class="k">if</span><span class="p">(</span><span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;2.0&#39;</span><span class="p">):</span>
+</span><span id="read_rwms-161"><a href="#read_rwms-161"><span class="linenos">161</span></a>                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
+</span><span id="read_rwms-162"><a href="#read_rwms-162"><span class="linenos">162</span></a>                        <span class="n">tmpd</span> <span class="o">=</span> <span class="n">_read_array_openQCD2</span><span class="p">(</span><span class="n">fp</span><span class="p">)</span>
+</span><span id="read_rwms-163"><a href="#read_rwms-163"><span class="linenos">163</span></a>                        <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;arr&#39;</span><span class="p">]</span>
+</span><span id="read_rwms-164"><a href="#read_rwms-164"><span class="linenos">164</span></a>                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="read_rwms-165"><a href="#read_rwms-165"><span class="linenos">165</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">tmpd</span><span class="p">[</span><span class="s1">&#39;n&#39;</span><span class="p">][</span><span class="mi">0</span><span class="p">]):</span>
+</span><span id="read_rwms-166"><a href="#read_rwms-166"><span class="linenos">166</span></a>                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
+</span><span id="read_rwms-167"><a href="#read_rwms-167"><span class="linenos">167</span></a>                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="read_rwms-168"><a href="#read_rwms-168"><span class="linenos">168</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
+</span><span id="read_rwms-169"><a href="#read_rwms-169"><span class="linenos">169</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))),</span>
+</span><span id="read_rwms-170"><a href="#read_rwms-170"><span class="linenos">170</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">]))))</span>
+</span><span id="read_rwms-171"><a href="#read_rwms-171"><span class="linenos">171</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span>
+</span><span id="read_rwms-172"><a href="#read_rwms-172"><span class="linenos">172</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">[</span><span class="n">j</span><span class="p">])))</span>
+</span><span id="read_rwms-173"><a href="#read_rwms-173"><span class="linenos">173</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="read_rwms-174"><a href="#read_rwms-174"><span class="linenos">174</span></a>                    <span class="k">elif</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.6&#39;</span> <span class="ow">or</span> <span class="n">version</span> <span class="o">==</span> <span class="s1">&#39;1.4&#39;</span><span class="p">:</span>
+</span><span id="read_rwms-175"><a href="#read_rwms-175"><span class="linenos">175</span></a>                        <span class="n">tmp_nfct</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="read_rwms-176"><a href="#read_rwms-176"><span class="linenos">176</span></a>                        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nfct</span><span class="p">[</span><span class="n">i</span><span class="p">]):</span>
+</span><span id="read_rwms-177"><a href="#read_rwms-177"><span class="linenos">177</span></a>                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="read_rwms-178"><a href="#read_rwms-178"><span class="linenos">178</span></a>                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="read_rwms-179"><a href="#read_rwms-179"><span class="linenos">179</span></a>                            <span class="n">tmp_rw</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">nsrc</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_rwms-180"><a href="#read_rwms-180"><span class="linenos">180</span></a>                            <span class="n">tmp_nfct</span> <span class="o">*=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
+</span><span id="read_rwms-181"><a href="#read_rwms-181"><span class="linenos">181</span></a>                            <span class="k">if</span> <span class="n">print_err</span><span class="p">:</span>
+</span><span id="read_rwms-182"><a href="#read_rwms-182"><span class="linenos">182</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="n">config_no</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span>
+</span><span id="read_rwms-183"><a href="#read_rwms-183"><span class="linenos">183</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))),</span>
+</span><span id="read_rwms-184"><a href="#read_rwms-184"><span class="linenos">184</span></a>                                      <span class="n">np</span><span class="o">.</span><span class="n">std</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">))))</span>
+</span><span id="read_rwms-185"><a href="#read_rwms-185"><span class="linenos">185</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Sources:&#39;</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tmp_rw</span><span class="p">)))</span>
+</span><span id="read_rwms-186"><a href="#read_rwms-186"><span class="linenos">186</span></a>                                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Partial factor:&#39;</span><span class="p">,</span> <span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="read_rwms-187"><a href="#read_rwms-187"><span class="linenos">187</span></a>                    <span class="n">tmp_array</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_nfct</span><span class="p">)</span>
+</span><span id="read_rwms-188"><a href="#read_rwms-188"><span class="linenos">188</span></a>
+</span><span id="read_rwms-189"><a href="#read_rwms-189"><span class="linenos">189</span></a>            <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="read_rwms-190"><a href="#read_rwms-190"><span class="linenos">190</span></a>            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="read_rwms-191"><a href="#read_rwms-191"><span class="linenos">191</span></a>            <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">diffmeas</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_rwms-192"><a href="#read_rwms-192"><span class="linenos">192</span></a>                <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-193"><a href="#read_rwms-193"><span class="linenos">193</span></a>                <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="read_rwms-194"><a href="#read_rwms-194"><span class="linenos">194</span></a>                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="read_rwms-195"><a href="#read_rwms-195"><span class="linenos">195</span></a>
+</span><span id="read_rwms-196"><a href="#read_rwms-196"><span class="linenos">196</span></a>            <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_rwms-197"><a href="#read_rwms-197"><span class="linenos">197</span></a>                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="read_rwms-198"><a href="#read_rwms-198"><span class="linenos">198</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-199"><a href="#read_rwms-199"><span class="linenos">199</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="read_rwms-200"><a href="#read_rwms-200"><span class="linenos">200</span></a>                    <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="read_rwms-201"><a href="#read_rwms-201"><span class="linenos">201</span></a>                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="read_rwms-202"><a href="#read_rwms-202"><span class="linenos">202</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="read_rwms-203"><a href="#read_rwms-203"><span class="linenos">203</span></a>                        <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="read_rwms-204"><a href="#read_rwms-204"><span class="linenos">204</span></a>
+</span><span id="read_rwms-205"><a href="#read_rwms-205"><span class="linenos">205</span></a>            <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_rwms-206"><a href="#read_rwms-206"><span class="linenos">206</span></a>                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="read_rwms-207"><a href="#read_rwms-207"><span class="linenos">207</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_rwms-208"><a href="#read_rwms-208"><span class="linenos">208</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="read_rwms-209"><a href="#read_rwms-209"><span class="linenos">209</span></a>                    <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="read_rwms-210"><a href="#read_rwms-210"><span class="linenos">210</span></a>                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="read_rwms-211"><a href="#read_rwms-211"><span class="linenos">211</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="read_rwms-212"><a href="#read_rwms-212"><span class="linenos">212</span></a>                        <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="read_rwms-213"><a href="#read_rwms-213"><span class="linenos">213</span></a>
+</span><span id="read_rwms-214"><a href="#read_rwms-214"><span class="linenos">214</span></a>            <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-215"><a href="#read_rwms-215"><span class="linenos">215</span></a>                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_array</span><span class="p">[</span><span class="n">k</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">])</span>
+</span><span id="read_rwms-216"><a href="#read_rwms-216"><span class="linenos">216</span></a>
+</span><span id="read_rwms-217"><a href="#read_rwms-217"><span class="linenos">217</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
+</span><span id="read_rwms-218"><a href="#read_rwms-218"><span class="linenos">218</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
+</span><span id="read_rwms-219"><a href="#read_rwms-219"><span class="linenos">219</span></a>    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
+</span><span id="read_rwms-220"><a href="#read_rwms-220"><span class="linenos">220</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
+</span><span id="read_rwms-221"><a href="#read_rwms-221"><span class="linenos">221</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="read_rwms-222"><a href="#read_rwms-222"><span class="linenos">222</span></a>
+</span><span id="read_rwms-223"><a href="#read_rwms-223"><span class="linenos">223</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">nrw</span><span class="p">,</span> <span class="s1">&#39;reweighting factors with&#39;</span><span class="p">,</span> <span class="n">nsrc</span><span class="p">,</span> <span class="s1">&#39;sources&#39;</span><span class="p">)</span>
+</span><span id="read_rwms-224"><a href="#read_rwms-224"><span class="linenos">224</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_rwms-225"><a href="#read_rwms-225"><span class="linenos">225</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
+</span><span id="read_rwms-226"><a href="#read_rwms-226"><span class="linenos">226</span></a>
+</span><span id="read_rwms-227"><a href="#read_rwms-227"><span class="linenos">227</span></a>    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nrw</span><span class="p">):</span>
+</span><span id="read_rwms-228"><a href="#read_rwms-228"><span class="linenos">228</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
+</span><span id="read_rwms-229"><a href="#read_rwms-229"><span class="linenos">229</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -1215,251 +1215,251 @@ Print additional information that is useful for debugging.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">extract_t0</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">dtr_read</span><span class="p">,</span> <span class="n">xmin</span><span class="p">,</span> <span class="n">spatial_extent</span><span class="p">,</span> <span class="n">fit_range</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Extract t0 from given .ms.dat files. Returns t0 as Obs.</span>
-
-<span class="sd">    It is assumed that all boundary effects have</span>
-<span class="sd">    sufficiently decayed at x0=xmin.</span>
-<span class="sd">    The data around the zero crossing of t^2&lt;E&gt; - 0.3</span>
-<span class="sd">    is fitted with a linear function</span>
-<span class="sd">    from which the exact root is extracted.</span>
-
-<span class="sd">    It is assumed that one measurement is performed for each config.</span>
-<span class="sd">    If this is not the case, the resulting idl, as well as the handling</span>
-<span class="sd">    of r_start, r_stop and r_step is wrong and the user has to correct</span>
-<span class="sd">    this in the resulting observable.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        Path to .ms.dat files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        Ensemble prefix</span>
-<span class="sd">    dtr_read : int</span>
-<span class="sd">        Determines how many trajectories should be skipped</span>
-<span class="sd">        when reading the ms.dat files.</span>
-<span class="sd">        Corresponds to dtr_cnfg / dtr_ms in the openQCD input file.</span>
-<span class="sd">    xmin : int</span>
-<span class="sd">        First timeslice where the boundary</span>
-<span class="sd">        effects have sufficiently decayed.</span>
-<span class="sd">    spatial_extent : int</span>
-<span class="sd">        spatial extent of the lattice, required for normalization.</span>
-<span class="sd">    fit_range : int</span>
-<span class="sd">        Number of data points left and right of the zero</span>
-<span class="sd">        crossing to be included in the linear fit. (Default: 5)</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum.</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum.</span>
-<span class="sd">    r_step : int</span>
-<span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
-<span class="sd">        If not given, r_step=1 is assumed.</span>
-<span class="sd">    plaquette : bool</span>
-<span class="sd">        If true extract the plaquette estimate of t0 instead.</span>
-<span class="sd">    names : list</span>
-<span class="sd">        list of names that is assigned to the data according according</span>
-<span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
-<span class="sd">    files : list</span>
-<span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
-<span class="sd">        files performed if given.</span>
-<span class="sd">    plot_fit : bool</span>
-<span class="sd">        If true, the fit for the extraction of t0 is shown together with the data.</span>
-<span class="sd">    assume_thermalization : bool</span>
-<span class="sd">        If True: If the first record divided by the distance between two measurements is larger than</span>
-<span class="sd">        1, it is assumed that this is due to thermalization and the first measurement belongs</span>
-<span class="sd">        to the first config (default).</span>
-<span class="sd">        If False: The config numbers are assumed to be traj_number // difference</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-        <span class="k">break</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.ms.dat&#39;</span><span class="p">):</span>
-                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
-
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Extract t0 from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-
-    <span class="n">Ysum</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
-
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-            <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
-            <span class="k">elif</span> <span class="n">dn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">or</span> <span class="n">nn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">or</span> <span class="n">tmax</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Replica parameters do not match.&#39;</span><span class="p">)</span>
-
-            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Step size:&#39;</span><span class="p">,</span> <span class="n">eps</span><span class="p">,</span> <span class="s1">&#39;, Maximal t value:&#39;</span><span class="p">,</span> <span class="n">dn</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span><span class="p">)</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="n">eps</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Values for eps do not match among replica.&#39;</span><span class="p">)</span>
-
-            <span class="n">Ysl</span> <span class="o">=</span> <span class="p">[]</span>
-
-            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
-                    <span class="k">break</span>
-                <span class="n">nc</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nc</span><span class="p">)</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-
-        <span class="n">Ysum</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysl</span><span class="p">):</span>
-            <span class="n">Ysum</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span> <span class="o">+</span> <span class="n">xmin</span><span class="p">:</span>
-                             <span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span> <span class="o">-</span> <span class="n">xmin</span><span class="p">])</span>
-                            <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
-
-        <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
-        <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;assume_thermalization&#39;</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span> <span class="ow">and</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
-            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
-            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-
-        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
-    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
-    <span class="n">t2E_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
-        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">nrep</span><span class="p">,</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysum</span><span class="p">):</span>
-            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-            <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">:</span>
-                <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg</span><span class="p">[</span><span class="n">n</span><span class="p">])</span>
-            <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">]</span>
-        <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
-        <span class="n">t2E_dict</span><span class="p">[</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">new_obs</span> <span class="o">/</span> <span class="p">(</span><span class="n">spatial_extent</span> <span class="o">**</span> <span class="mi">3</span><span class="p">)</span> <span class="o">-</span> <span class="mf">0.3</span>
-
-    <span class="n">zero_crossing</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
-        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()])</span> <span class="o">&gt;</span> <span class="mf">0.0</span><span class="p">)</span>
-
-    <span class="n">x</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
-                              <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
-    <span class="n">y</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
-                                <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
-    <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
-
-    <span class="n">fit_result</span> <span class="o">=</span> <span class="n">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plot_fit&#39;</span><span class="p">):</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-        <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
-        <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="n">xmore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
-        <span class="n">ymore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
-        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">]</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">xmore</span><span class="p">,</span> <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;x&#39;</span><span class="p">)</span>
-        <span class="n">xplot</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">x</span><span class="p">))</span>
-        <span class="n">yplot</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">xplot</span><span class="p">]</span>
-        <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">]</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xplot</span><span class="p">,</span> <span class="n">y1</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">],</span> <span class="n">y2</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">])</span>
-        <span class="n">retval</span> <span class="o">=</span> <span class="p">(</span><span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-        <span class="n">retval</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
-        <span class="n">ylim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_ylim</span><span class="p">()</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_betweenx</span><span class="p">(</span><span class="n">ylim</span><span class="p">,</span> <span class="n">x1</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">x2</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;gray&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.4</span><span class="p">)</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">ylim</span><span class="p">)</span>
-        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t^2 \langle E(t) \rangle - 0.3 $&#39;</span><span class="p">)</span>
-        <span class="n">xlim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_xlim</span><span class="p">()</span>
-
-        <span class="n">fit_res</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]</span>
-        <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">])</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-        <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xlim</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">(</span><span class="n">xlim</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t/a^2$&#39;</span><span class="p">)</span>
-
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-    <span class="k">return</span> <span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="extract_t0-232"><a href="#extract_t0-232"><span class="linenos">232</span></a><span class="k">def</span> <span class="nf">extract_t0</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">dtr_read</span><span class="p">,</span> <span class="n">xmin</span><span class="p">,</span> <span class="n">spatial_extent</span><span class="p">,</span> <span class="n">fit_range</span><span class="o">=</span><span class="mi">5</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="extract_t0-233"><a href="#extract_t0-233"><span class="linenos">233</span></a>    <span class="sd">&quot;&quot;&quot;Extract t0 from given .ms.dat files. Returns t0 as Obs.</span>
+</span><span id="extract_t0-234"><a href="#extract_t0-234"><span class="linenos">234</span></a>
+</span><span id="extract_t0-235"><a href="#extract_t0-235"><span class="linenos">235</span></a><span class="sd">    It is assumed that all boundary effects have</span>
+</span><span id="extract_t0-236"><a href="#extract_t0-236"><span class="linenos">236</span></a><span class="sd">    sufficiently decayed at x0=xmin.</span>
+</span><span id="extract_t0-237"><a href="#extract_t0-237"><span class="linenos">237</span></a><span class="sd">    The data around the zero crossing of t^2&lt;E&gt; - 0.3</span>
+</span><span id="extract_t0-238"><a href="#extract_t0-238"><span class="linenos">238</span></a><span class="sd">    is fitted with a linear function</span>
+</span><span id="extract_t0-239"><a href="#extract_t0-239"><span class="linenos">239</span></a><span class="sd">    from which the exact root is extracted.</span>
+</span><span id="extract_t0-240"><a href="#extract_t0-240"><span class="linenos">240</span></a>
+</span><span id="extract_t0-241"><a href="#extract_t0-241"><span class="linenos">241</span></a><span class="sd">    It is assumed that one measurement is performed for each config.</span>
+</span><span id="extract_t0-242"><a href="#extract_t0-242"><span class="linenos">242</span></a><span class="sd">    If this is not the case, the resulting idl, as well as the handling</span>
+</span><span id="extract_t0-243"><a href="#extract_t0-243"><span class="linenos">243</span></a><span class="sd">    of r_start, r_stop and r_step is wrong and the user has to correct</span>
+</span><span id="extract_t0-244"><a href="#extract_t0-244"><span class="linenos">244</span></a><span class="sd">    this in the resulting observable.</span>
+</span><span id="extract_t0-245"><a href="#extract_t0-245"><span class="linenos">245</span></a>
+</span><span id="extract_t0-246"><a href="#extract_t0-246"><span class="linenos">246</span></a><span class="sd">    Parameters</span>
+</span><span id="extract_t0-247"><a href="#extract_t0-247"><span class="linenos">247</span></a><span class="sd">    ----------</span>
+</span><span id="extract_t0-248"><a href="#extract_t0-248"><span class="linenos">248</span></a><span class="sd">    path : str</span>
+</span><span id="extract_t0-249"><a href="#extract_t0-249"><span class="linenos">249</span></a><span class="sd">        Path to .ms.dat files</span>
+</span><span id="extract_t0-250"><a href="#extract_t0-250"><span class="linenos">250</span></a><span class="sd">    prefix : str</span>
+</span><span id="extract_t0-251"><a href="#extract_t0-251"><span class="linenos">251</span></a><span class="sd">        Ensemble prefix</span>
+</span><span id="extract_t0-252"><a href="#extract_t0-252"><span class="linenos">252</span></a><span class="sd">    dtr_read : int</span>
+</span><span id="extract_t0-253"><a href="#extract_t0-253"><span class="linenos">253</span></a><span class="sd">        Determines how many trajectories should be skipped</span>
+</span><span id="extract_t0-254"><a href="#extract_t0-254"><span class="linenos">254</span></a><span class="sd">        when reading the ms.dat files.</span>
+</span><span id="extract_t0-255"><a href="#extract_t0-255"><span class="linenos">255</span></a><span class="sd">        Corresponds to dtr_cnfg / dtr_ms in the openQCD input file.</span>
+</span><span id="extract_t0-256"><a href="#extract_t0-256"><span class="linenos">256</span></a><span class="sd">    xmin : int</span>
+</span><span id="extract_t0-257"><a href="#extract_t0-257"><span class="linenos">257</span></a><span class="sd">        First timeslice where the boundary</span>
+</span><span id="extract_t0-258"><a href="#extract_t0-258"><span class="linenos">258</span></a><span class="sd">        effects have sufficiently decayed.</span>
+</span><span id="extract_t0-259"><a href="#extract_t0-259"><span class="linenos">259</span></a><span class="sd">    spatial_extent : int</span>
+</span><span id="extract_t0-260"><a href="#extract_t0-260"><span class="linenos">260</span></a><span class="sd">        spatial extent of the lattice, required for normalization.</span>
+</span><span id="extract_t0-261"><a href="#extract_t0-261"><span class="linenos">261</span></a><span class="sd">    fit_range : int</span>
+</span><span id="extract_t0-262"><a href="#extract_t0-262"><span class="linenos">262</span></a><span class="sd">        Number of data points left and right of the zero</span>
+</span><span id="extract_t0-263"><a href="#extract_t0-263"><span class="linenos">263</span></a><span class="sd">        crossing to be included in the linear fit. (Default: 5)</span>
+</span><span id="extract_t0-264"><a href="#extract_t0-264"><span class="linenos">264</span></a><span class="sd">    r_start : list</span>
+</span><span id="extract_t0-265"><a href="#extract_t0-265"><span class="linenos">265</span></a><span class="sd">        list which contains the first config to be read for each replicum.</span>
+</span><span id="extract_t0-266"><a href="#extract_t0-266"><span class="linenos">266</span></a><span class="sd">    r_stop : list</span>
+</span><span id="extract_t0-267"><a href="#extract_t0-267"><span class="linenos">267</span></a><span class="sd">        list which contains the last config to be read for each replicum.</span>
+</span><span id="extract_t0-268"><a href="#extract_t0-268"><span class="linenos">268</span></a><span class="sd">    r_step : int</span>
+</span><span id="extract_t0-269"><a href="#extract_t0-269"><span class="linenos">269</span></a><span class="sd">        integer that defines a fixed step size between two measurements (in units of configs)</span>
+</span><span id="extract_t0-270"><a href="#extract_t0-270"><span class="linenos">270</span></a><span class="sd">        If not given, r_step=1 is assumed.</span>
+</span><span id="extract_t0-271"><a href="#extract_t0-271"><span class="linenos">271</span></a><span class="sd">    plaquette : bool</span>
+</span><span id="extract_t0-272"><a href="#extract_t0-272"><span class="linenos">272</span></a><span class="sd">        If true extract the plaquette estimate of t0 instead.</span>
+</span><span id="extract_t0-273"><a href="#extract_t0-273"><span class="linenos">273</span></a><span class="sd">    names : list</span>
+</span><span id="extract_t0-274"><a href="#extract_t0-274"><span class="linenos">274</span></a><span class="sd">        list of names that is assigned to the data according according</span>
+</span><span id="extract_t0-275"><a href="#extract_t0-275"><span class="linenos">275</span></a><span class="sd">        to the order in the file list. Use careful, if you do not provide file names!</span>
+</span><span id="extract_t0-276"><a href="#extract_t0-276"><span class="linenos">276</span></a><span class="sd">    files : list</span>
+</span><span id="extract_t0-277"><a href="#extract_t0-277"><span class="linenos">277</span></a><span class="sd">        list which contains the filenames to be read. No automatic detection of</span>
+</span><span id="extract_t0-278"><a href="#extract_t0-278"><span class="linenos">278</span></a><span class="sd">        files performed if given.</span>
+</span><span id="extract_t0-279"><a href="#extract_t0-279"><span class="linenos">279</span></a><span class="sd">    plot_fit : bool</span>
+</span><span id="extract_t0-280"><a href="#extract_t0-280"><span class="linenos">280</span></a><span class="sd">        If true, the fit for the extraction of t0 is shown together with the data.</span>
+</span><span id="extract_t0-281"><a href="#extract_t0-281"><span class="linenos">281</span></a><span class="sd">    assume_thermalization : bool</span>
+</span><span id="extract_t0-282"><a href="#extract_t0-282"><span class="linenos">282</span></a><span class="sd">        If True: If the first record divided by the distance between two measurements is larger than</span>
+</span><span id="extract_t0-283"><a href="#extract_t0-283"><span class="linenos">283</span></a><span class="sd">        1, it is assumed that this is due to thermalization and the first measurement belongs</span>
+</span><span id="extract_t0-284"><a href="#extract_t0-284"><span class="linenos">284</span></a><span class="sd">        to the first config (default).</span>
+</span><span id="extract_t0-285"><a href="#extract_t0-285"><span class="linenos">285</span></a><span class="sd">        If False: The config numbers are assumed to be traj_number // difference</span>
+</span><span id="extract_t0-286"><a href="#extract_t0-286"><span class="linenos">286</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="extract_t0-287"><a href="#extract_t0-287"><span class="linenos">287</span></a>
+</span><span id="extract_t0-288"><a href="#extract_t0-288"><span class="linenos">288</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-289"><a href="#extract_t0-289"><span class="linenos">289</span></a>    <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="extract_t0-290"><a href="#extract_t0-290"><span class="linenos">290</span></a>        <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="extract_t0-291"><a href="#extract_t0-291"><span class="linenos">291</span></a>        <span class="k">break</span>
+</span><span id="extract_t0-292"><a href="#extract_t0-292"><span class="linenos">292</span></a>
+</span><span id="extract_t0-293"><a href="#extract_t0-293"><span class="linenos">293</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="extract_t0-294"><a href="#extract_t0-294"><span class="linenos">294</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-295"><a href="#extract_t0-295"><span class="linenos">295</span></a>
+</span><span id="extract_t0-296"><a href="#extract_t0-296"><span class="linenos">296</span></a>    <span class="k">if</span> <span class="s1">&#39;files&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="extract_t0-297"><a href="#extract_t0-297"><span class="linenos">297</span></a>        <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;files&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-298"><a href="#extract_t0-298"><span class="linenos">298</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="extract_t0-299"><a href="#extract_t0-299"><span class="linenos">299</span></a>        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="extract_t0-300"><a href="#extract_t0-300"><span class="linenos">300</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.ms.dat&#39;</span><span class="p">):</span>
+</span><span id="extract_t0-301"><a href="#extract_t0-301"><span class="linenos">301</span></a>                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="extract_t0-302"><a href="#extract_t0-302"><span class="linenos">302</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="extract_t0-303"><a href="#extract_t0-303"><span class="linenos">303</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="extract_t0-304"><a href="#extract_t0-304"><span class="linenos">304</span></a>    <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="extract_t0-305"><a href="#extract_t0-305"><span class="linenos">305</span></a>
+</span><span id="extract_t0-306"><a href="#extract_t0-306"><span class="linenos">306</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="extract_t0-307"><a href="#extract_t0-307"><span class="linenos">307</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-308"><a href="#extract_t0-308"><span class="linenos">308</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="extract_t0-309"><a href="#extract_t0-309"><span class="linenos">309</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-310"><a href="#extract_t0-310"><span class="linenos">310</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="extract_t0-311"><a href="#extract_t0-311"><span class="linenos">311</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="extract_t0-312"><a href="#extract_t0-312"><span class="linenos">312</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="extract_t0-313"><a href="#extract_t0-313"><span class="linenos">313</span></a>
+</span><span id="extract_t0-314"><a href="#extract_t0-314"><span class="linenos">314</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="extract_t0-315"><a href="#extract_t0-315"><span class="linenos">315</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-316"><a href="#extract_t0-316"><span class="linenos">316</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="extract_t0-317"><a href="#extract_t0-317"><span class="linenos">317</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-318"><a href="#extract_t0-318"><span class="linenos">318</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="extract_t0-319"><a href="#extract_t0-319"><span class="linenos">319</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="n">replica</span>
+</span><span id="extract_t0-320"><a href="#extract_t0-320"><span class="linenos">320</span></a>
+</span><span id="extract_t0-321"><a href="#extract_t0-321"><span class="linenos">321</span></a>    <span class="k">if</span> <span class="s1">&#39;r_step&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="extract_t0-322"><a href="#extract_t0-322"><span class="linenos">322</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_step&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-323"><a href="#extract_t0-323"><span class="linenos">323</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="extract_t0-324"><a href="#extract_t0-324"><span class="linenos">324</span></a>        <span class="n">r_step</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="extract_t0-325"><a href="#extract_t0-325"><span class="linenos">325</span></a>
+</span><span id="extract_t0-326"><a href="#extract_t0-326"><span class="linenos">326</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Extract t0 from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-327"><a href="#extract_t0-327"><span class="linenos">327</span></a>
+</span><span id="extract_t0-328"><a href="#extract_t0-328"><span class="linenos">328</span></a>    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="extract_t0-329"><a href="#extract_t0-329"><span class="linenos">329</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-330"><a href="#extract_t0-330"><span class="linenos">330</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="extract_t0-331"><a href="#extract_t0-331"><span class="linenos">331</span></a>        <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-332"><a href="#extract_t0-332"><span class="linenos">332</span></a>        <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="extract_t0-333"><a href="#extract_t0-333"><span class="linenos">333</span></a>            <span class="n">truncated_entry</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;.&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="extract_t0-334"><a href="#extract_t0-334"><span class="linenos">334</span></a>            <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-335"><a href="#extract_t0-335"><span class="linenos">335</span></a>            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">truncated_entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="extract_t0-336"><a href="#extract_t0-336"><span class="linenos">336</span></a>
+</span><span id="extract_t0-337"><a href="#extract_t0-337"><span class="linenos">337</span></a>    <span class="n">Ysum</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-338"><a href="#extract_t0-338"><span class="linenos">338</span></a>
+</span><span id="extract_t0-339"><a href="#extract_t0-339"><span class="linenos">339</span></a>    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-340"><a href="#extract_t0-340"><span class="linenos">340</span></a>    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-341"><a href="#extract_t0-341"><span class="linenos">341</span></a>    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-342"><a href="#extract_t0-342"><span class="linenos">342</span></a>
+</span><span id="extract_t0-343"><a href="#extract_t0-343"><span class="linenos">343</span></a>    <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">):</span>
+</span><span id="extract_t0-344"><a href="#extract_t0-344"><span class="linenos">344</span></a>
+</span><span id="extract_t0-345"><a href="#extract_t0-345"><span class="linenos">345</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">ls</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="extract_t0-346"><a href="#extract_t0-346"><span class="linenos">346</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="extract_t0-347"><a href="#extract_t0-347"><span class="linenos">347</span></a>            <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="extract_t0-348"><a href="#extract_t0-348"><span class="linenos">348</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="extract_t0-349"><a href="#extract_t0-349"><span class="linenos">349</span></a>                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="extract_t0-350"><a href="#extract_t0-350"><span class="linenos">350</span></a>                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="extract_t0-351"><a href="#extract_t0-351"><span class="linenos">351</span></a>                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="extract_t0-352"><a href="#extract_t0-352"><span class="linenos">352</span></a>            <span class="k">elif</span> <span class="n">dn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="ow">or</span> <span class="n">nn</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">or</span> <span class="n">tmax</span> <span class="o">!=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]:</span>
+</span><span id="extract_t0-353"><a href="#extract_t0-353"><span class="linenos">353</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Replica parameters do not match.&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-354"><a href="#extract_t0-354"><span class="linenos">354</span></a>
+</span><span id="extract_t0-355"><a href="#extract_t0-355"><span class="linenos">355</span></a>            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
+</span><span id="extract_t0-356"><a href="#extract_t0-356"><span class="linenos">356</span></a>            <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="extract_t0-357"><a href="#extract_t0-357"><span class="linenos">357</span></a>                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="extract_t0-358"><a href="#extract_t0-358"><span class="linenos">358</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Step size:&#39;</span><span class="p">,</span> <span class="n">eps</span><span class="p">,</span> <span class="s1">&#39;, Maximal t value:&#39;</span><span class="p">,</span> <span class="n">dn</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span><span class="p">)</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span>
+</span><span id="extract_t0-359"><a href="#extract_t0-359"><span class="linenos">359</span></a>            <span class="k">elif</span> <span class="n">eps</span> <span class="o">!=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]:</span>
+</span><span id="extract_t0-360"><a href="#extract_t0-360"><span class="linenos">360</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Values for eps do not match among replica.&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-361"><a href="#extract_t0-361"><span class="linenos">361</span></a>
+</span><span id="extract_t0-362"><a href="#extract_t0-362"><span class="linenos">362</span></a>            <span class="n">Ysl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-363"><a href="#extract_t0-363"><span class="linenos">363</span></a>
+</span><span id="extract_t0-364"><a href="#extract_t0-364"><span class="linenos">364</span></a>            <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="extract_t0-365"><a href="#extract_t0-365"><span class="linenos">365</span></a>            <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="extract_t0-366"><a href="#extract_t0-366"><span class="linenos">366</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="extract_t0-367"><a href="#extract_t0-367"><span class="linenos">367</span></a>                <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="extract_t0-368"><a href="#extract_t0-368"><span class="linenos">368</span></a>                    <span class="k">break</span>
+</span><span id="extract_t0-369"><a href="#extract_t0-369"><span class="linenos">369</span></a>                <span class="n">nc</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="extract_t0-370"><a href="#extract_t0-370"><span class="linenos">370</span></a>                <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">nc</span><span class="p">)</span>
+</span><span id="extract_t0-371"><a href="#extract_t0-371"><span class="linenos">371</span></a>
+</span><span id="extract_t0-372"><a href="#extract_t0-372"><span class="linenos">372</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="extract_t0-373"><a href="#extract_t0-373"><span class="linenos">373</span></a>                <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
+</span><span id="extract_t0-374"><a href="#extract_t0-374"><span class="linenos">374</span></a>                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="extract_t0-375"><a href="#extract_t0-375"><span class="linenos">375</span></a>                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
+</span><span id="extract_t0-376"><a href="#extract_t0-376"><span class="linenos">376</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="extract_t0-377"><a href="#extract_t0-377"><span class="linenos">377</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plaquette&#39;</span><span class="p">):</span>
+</span><span id="extract_t0-378"><a href="#extract_t0-378"><span class="linenos">378</span></a>                    <span class="k">if</span> <span class="n">nc</span> <span class="o">%</span> <span class="n">dtr_read</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="extract_t0-379"><a href="#extract_t0-379"><span class="linenos">379</span></a>                        <span class="n">Ysl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">))</span>
+</span><span id="extract_t0-380"><a href="#extract_t0-380"><span class="linenos">380</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="extract_t0-381"><a href="#extract_t0-381"><span class="linenos">381</span></a>
+</span><span id="extract_t0-382"><a href="#extract_t0-382"><span class="linenos">382</span></a>        <span class="n">Ysum</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="extract_t0-383"><a href="#extract_t0-383"><span class="linenos">383</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysl</span><span class="p">):</span>
+</span><span id="extract_t0-384"><a href="#extract_t0-384"><span class="linenos">384</span></a>            <span class="n">Ysum</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span> <span class="o">+</span> <span class="n">xmin</span><span class="p">:</span>
+</span><span id="extract_t0-385"><a href="#extract_t0-385"><span class="linenos">385</span></a>                             <span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span> <span class="o">-</span> <span class="n">xmin</span><span class="p">])</span>
+</span><span id="extract_t0-386"><a href="#extract_t0-386"><span class="linenos">386</span></a>                            <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
+</span><span id="extract_t0-387"><a href="#extract_t0-387"><span class="linenos">387</span></a>
+</span><span id="extract_t0-388"><a href="#extract_t0-388"><span class="linenos">388</span></a>        <span class="n">diffmeas</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="extract_t0-389"><a href="#extract_t0-389"><span class="linenos">389</span></a>        <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">//</span> <span class="n">diffmeas</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="extract_t0-390"><a href="#extract_t0-390"><span class="linenos">390</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;assume_thermalization&#39;</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span> <span class="ow">and</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="extract_t0-391"><a href="#extract_t0-391"><span class="linenos">391</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config.&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-392"><a href="#extract_t0-392"><span class="linenos">392</span></a>            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="extract_t0-393"><a href="#extract_t0-393"><span class="linenos">393</span></a>            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="extract_t0-394"><a href="#extract_t0-394"><span class="linenos">394</span></a>
+</span><span id="extract_t0-395"><a href="#extract_t0-395"><span class="linenos">395</span></a>        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="extract_t0-396"><a href="#extract_t0-396"><span class="linenos">396</span></a>            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="extract_t0-397"><a href="#extract_t0-397"><span class="linenos">397</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="extract_t0-398"><a href="#extract_t0-398"><span class="linenos">398</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="extract_t0-399"><a href="#extract_t0-399"><span class="linenos">399</span></a>                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="extract_t0-400"><a href="#extract_t0-400"><span class="linenos">400</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="extract_t0-401"><a href="#extract_t0-401"><span class="linenos">401</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="extract_t0-402"><a href="#extract_t0-402"><span class="linenos">402</span></a>                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="extract_t0-403"><a href="#extract_t0-403"><span class="linenos">403</span></a>
+</span><span id="extract_t0-404"><a href="#extract_t0-404"><span class="linenos">404</span></a>        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="extract_t0-405"><a href="#extract_t0-405"><span class="linenos">405</span></a>            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="extract_t0-406"><a href="#extract_t0-406"><span class="linenos">406</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="extract_t0-407"><a href="#extract_t0-407"><span class="linenos">407</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="extract_t0-408"><a href="#extract_t0-408"><span class="linenos">408</span></a>                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="extract_t0-409"><a href="#extract_t0-409"><span class="linenos">409</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="extract_t0-410"><a href="#extract_t0-410"><span class="linenos">410</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="extract_t0-411"><a href="#extract_t0-411"><span class="linenos">411</span></a>                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="extract_t0-412"><a href="#extract_t0-412"><span class="linenos">412</span></a>
+</span><span id="extract_t0-413"><a href="#extract_t0-413"><span class="linenos">413</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]):</span>
+</span><span id="extract_t0-414"><a href="#extract_t0-414"><span class="linenos">414</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Irregular spaced data in input file!&#39;</span><span class="p">,</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">])</span>
+</span><span id="extract_t0-415"><a href="#extract_t0-415"><span class="linenos">415</span></a>    <span class="n">stepsizes</span> <span class="o">=</span> <span class="p">[</span><span class="nb">list</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">cl</span><span class="p">)))[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">cl</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">]</span>
+</span><span id="extract_t0-416"><a href="#extract_t0-416"><span class="linenos">416</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span> <span class="k">for</span> <span class="n">step</span> <span class="ow">in</span> <span class="n">stepsizes</span><span class="p">]):</span>
+</span><span id="extract_t0-417"><a href="#extract_t0-417"><span class="linenos">417</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Stepsize between configurations is greater than one!&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">stepsizes</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="extract_t0-418"><a href="#extract_t0-418"><span class="linenos">418</span></a>
+</span><span id="extract_t0-419"><a href="#extract_t0-419"><span class="linenos">419</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]],</span> <span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="n">r_step</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">replica</span><span class="p">)]</span>
+</span><span id="extract_t0-420"><a href="#extract_t0-420"><span class="linenos">420</span></a>    <span class="n">t2E_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="extract_t0-421"><a href="#extract_t0-421"><span class="linenos">421</span></a>    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="extract_t0-422"><a href="#extract_t0-422"><span class="linenos">422</span></a>        <span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="extract_t0-423"><a href="#extract_t0-423"><span class="linenos">423</span></a>        <span class="k">for</span> <span class="n">nrep</span><span class="p">,</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Ysum</span><span class="p">):</span>
+</span><span id="extract_t0-424"><a href="#extract_t0-424"><span class="linenos">424</span></a>            <span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="extract_t0-425"><a href="#extract_t0-425"><span class="linenos">425</span></a>            <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="n">rep</span><span class="p">:</span>
+</span><span id="extract_t0-426"><a href="#extract_t0-426"><span class="linenos">426</span></a>                <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">cnfg</span><span class="p">[</span><span class="n">n</span><span class="p">])</span>
+</span><span id="extract_t0-427"><a href="#extract_t0-427"><span class="linenos">427</span></a>            <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="n">samples</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">][::</span><span class="n">r_step</span><span class="p">]</span>
+</span><span id="extract_t0-428"><a href="#extract_t0-428"><span class="linenos">428</span></a>        <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
+</span><span id="extract_t0-429"><a href="#extract_t0-429"><span class="linenos">429</span></a>        <span class="n">t2E_dict</span><span class="p">[</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">dn</span> <span class="o">*</span> <span class="n">eps</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">new_obs</span> <span class="o">/</span> <span class="p">(</span><span class="n">spatial_extent</span> <span class="o">**</span> <span class="mi">3</span><span class="p">)</span> <span class="o">-</span> <span class="mf">0.3</span>
+</span><span id="extract_t0-430"><a href="#extract_t0-430"><span class="linenos">430</span></a>
+</span><span id="extract_t0-431"><a href="#extract_t0-431"><span class="linenos">431</span></a>    <span class="n">zero_crossing</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">argmax</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span>
+</span><span id="extract_t0-432"><a href="#extract_t0-432"><span class="linenos">432</span></a>        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()])</span> <span class="o">&gt;</span> <span class="mf">0.0</span><span class="p">)</span>
+</span><span id="extract_t0-433"><a href="#extract_t0-433"><span class="linenos">433</span></a>
+</span><span id="extract_t0-434"><a href="#extract_t0-434"><span class="linenos">434</span></a>    <span class="n">x</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
+</span><span id="extract_t0-435"><a href="#extract_t0-435"><span class="linenos">435</span></a>                              <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
+</span><span id="extract_t0-436"><a href="#extract_t0-436"><span class="linenos">436</span></a>    <span class="n">y</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span><span class="p">:</span>
+</span><span id="extract_t0-437"><a href="#extract_t0-437"><span class="linenos">437</span></a>                                <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span><span class="p">]</span>
+</span><span id="extract_t0-438"><a href="#extract_t0-438"><span class="linenos">438</span></a>    <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">]</span>
+</span><span id="extract_t0-439"><a href="#extract_t0-439"><span class="linenos">439</span></a>
+</span><span id="extract_t0-440"><a href="#extract_t0-440"><span class="linenos">440</span></a>    <span class="n">fit_result</span> <span class="o">=</span> <span class="n">fit_lin</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="extract_t0-441"><a href="#extract_t0-441"><span class="linenos">441</span></a>
+</span><span id="extract_t0-442"><a href="#extract_t0-442"><span class="linenos">442</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;plot_fit&#39;</span><span class="p">):</span>
+</span><span id="extract_t0-443"><a href="#extract_t0-443"><span class="linenos">443</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="extract_t0-444"><a href="#extract_t0-444"><span class="linenos">444</span></a>        <span class="n">gs</span> <span class="o">=</span> <span class="n">gridspec</span><span class="o">.</span><span class="n">GridSpec</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">height_ratios</span><span class="o">=</span><span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="mi">1</span><span class="p">],</span> <span class="n">wspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">hspace</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
+</span><span id="extract_t0-445"><a href="#extract_t0-445"><span class="linenos">445</span></a>        <span class="n">ax0</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="extract_t0-446"><a href="#extract_t0-446"><span class="linenos">446</span></a>        <span class="n">xmore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
+</span><span id="extract_t0-447"><a href="#extract_t0-447"><span class="linenos">447</span></a>        <span class="n">ymore</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">t2E_dict</span><span class="o">.</span><span class="n">values</span><span class="p">())[</span><span class="n">zero_crossing</span> <span class="o">-</span> <span class="n">fit_range</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span> <span class="n">zero_crossing</span> <span class="o">+</span> <span class="n">fit_range</span> <span class="o">+</span> <span class="mi">2</span><span class="p">]</span>
+</span><span id="extract_t0-448"><a href="#extract_t0-448"><span class="linenos">448</span></a>        <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">]</span>
+</span><span id="extract_t0-449"><a href="#extract_t0-449"><span class="linenos">449</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">xmore</span><span class="p">,</span> <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">ymore</span><span class="p">],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;x&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-450"><a href="#extract_t0-450"><span class="linenos">450</span></a>        <span class="n">xplot</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">x</span><span class="p">))</span>
+</span><span id="extract_t0-451"><a href="#extract_t0-451"><span class="linenos">451</span></a>        <span class="n">yplot</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">xplot</span><span class="p">]</span>
+</span><span id="extract_t0-452"><a href="#extract_t0-452"><span class="linenos">452</span></a>        <span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">]</span>
+</span><span id="extract_t0-453"><a href="#extract_t0-453"><span class="linenos">453</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xplot</span><span class="p">,</span> <span class="n">y1</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">],</span> <span class="n">y2</span><span class="o">=</span><span class="p">[</span><span class="n">yi</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">yi</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">yi</span> <span class="ow">in</span> <span class="n">yplot</span><span class="p">])</span>
+</span><span id="extract_t0-454"><a href="#extract_t0-454"><span class="linenos">454</span></a>        <span class="n">retval</span> <span class="o">=</span> <span class="p">(</span><span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="extract_t0-455"><a href="#extract_t0-455"><span class="linenos">455</span></a>        <span class="n">retval</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">()</span>
+</span><span id="extract_t0-456"><a href="#extract_t0-456"><span class="linenos">456</span></a>        <span class="n">ylim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_ylim</span><span class="p">()</span>
+</span><span id="extract_t0-457"><a href="#extract_t0-457"><span class="linenos">457</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">fill_betweenx</span><span class="p">(</span><span class="n">ylim</span><span class="p">,</span> <span class="n">x1</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">-</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">x2</span><span class="o">=</span><span class="n">retval</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">retval</span><span class="o">.</span><span class="n">dvalue</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;gray&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.4</span><span class="p">)</span>
+</span><span id="extract_t0-458"><a href="#extract_t0-458"><span class="linenos">458</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylim</span><span class="p">(</span><span class="n">ylim</span><span class="p">)</span>
+</span><span id="extract_t0-459"><a href="#extract_t0-459"><span class="linenos">459</span></a>        <span class="n">ax0</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t^2 \langle E(t) \rangle - 0.3 $&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-460"><a href="#extract_t0-460"><span class="linenos">460</span></a>        <span class="n">xlim</span> <span class="o">=</span> <span class="n">ax0</span><span class="o">.</span><span class="n">get_xlim</span><span class="p">()</span>
+</span><span id="extract_t0-461"><a href="#extract_t0-461"><span class="linenos">461</span></a>
+</span><span id="extract_t0-462"><a href="#extract_t0-462"><span class="linenos">462</span></a>        <span class="n">fit_res</span> <span class="o">=</span> <span class="p">[</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">xi</span> <span class="k">for</span> <span class="n">xi</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]</span>
+</span><span id="extract_t0-463"><a href="#extract_t0-463"><span class="linenos">463</span></a>        <span class="n">residuals</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span> <span class="o">-</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">fit_res</span><span class="p">])</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="extract_t0-464"><a href="#extract_t0-464"><span class="linenos">464</span></a>        <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplot</span><span class="p">(</span><span class="n">gs</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="extract_t0-465"><a href="#extract_t0-465"><span class="linenos">465</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">residuals</span><span class="p">,</span> <span class="s1">&#39;ko&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;none&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">5</span><span class="p">)</span>
+</span><span id="extract_t0-466"><a href="#extract_t0-466"><span class="linenos">466</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">direction</span><span class="o">=</span><span class="s1">&#39;out&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-467"><a href="#extract_t0-467"><span class="linenos">467</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">tick_params</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s2">&quot;x&quot;</span><span class="p">,</span> <span class="n">bottom</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">labelbottom</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="extract_t0-468"><a href="#extract_t0-468"><span class="linenos">468</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">axhline</span><span class="p">(</span><span class="n">y</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-469"><a href="#extract_t0-469"><span class="linenos">469</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">fill_between</span><span class="p">(</span><span class="n">xlim</span><span class="p">,</span> <span class="o">-</span><span class="mf">1.0</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.1</span><span class="p">,</span> <span class="n">facecolor</span><span class="o">=</span><span class="s1">&#39;k&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-470"><a href="#extract_t0-470"><span class="linenos">470</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlim</span><span class="p">(</span><span class="n">xlim</span><span class="p">)</span>
+</span><span id="extract_t0-471"><a href="#extract_t0-471"><span class="linenos">471</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_ylabel</span><span class="p">(</span><span class="s1">&#39;Residuals&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-472"><a href="#extract_t0-472"><span class="linenos">472</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">set_xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$t/a^2$&#39;</span><span class="p">)</span>
+</span><span id="extract_t0-473"><a href="#extract_t0-473"><span class="linenos">473</span></a>
+</span><span id="extract_t0-474"><a href="#extract_t0-474"><span class="linenos">474</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="extract_t0-475"><a href="#extract_t0-475"><span class="linenos">475</span></a>    <span class="k">return</span> <span class="o">-</span><span class="n">fit_result</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">fit_result</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span></pre></div>
 
         </details>
 
@@ -1532,263 +1532,263 @@ If False: The config numbers are assumed to be traj_number // difference</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">dtr_cnfg</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read the topologial charge based on openQCD gradient flow measurements.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path of the measurement files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat.</span>
-<span class="sd">        Ignored if file names are passed explicitly via keyword files.</span>
-<span class="sd">    c : double</span>
-<span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L.</span>
-<span class="sd">    dtr_cnfg : int</span>
-<span class="sd">        (optional) parameter that specifies the number of measurements</span>
-<span class="sd">        between two configs.</span>
-<span class="sd">        If it is not set, the distance between two measurements</span>
-<span class="sd">        in the file is assumed to be the distance between two configurations.</span>
-<span class="sd">    steps : int</span>
-<span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
-<span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
-<span class="sd">    version : str</span>
-<span class="sd">        Either openQCD or sfqcd, depending on the data.</span>
-<span class="sd">    L : int</span>
-<span class="sd">        spatial length of the lattice in L/a.</span>
-<span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
-<span class="sd">        this in the header</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        list which contains the first config to be read for each replicum.</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        list which contains the last config to be read for each replicum.</span>
-<span class="sd">    files : list</span>
-<span class="sd">        specify the exact files that need to be read</span>
-<span class="sd">        from path, practical if e.g. only one replicum is needed</span>
-<span class="sd">    names : list</span>
-<span class="sd">        Alternative labeling for replicas/ensembles.</span>
-<span class="sd">        Has to have the appropriate length.</span>
-<span class="sd">    Zeuthen_flow : bool</span>
-<span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
-<span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
-<span class="sd">    integer_charge : bool</span>
-<span class="sd">        If True, the charge is rounded towards the nearest integer on each config.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown openQCD version.&quot;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s2">&quot;steps&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">steps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;steps&quot;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">:</span>
-        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="n">supposed_L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">supposed_L</span> <span class="o">=</span> <span class="kc">None</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.gfms.dat&quot;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version of openQCD needs you to provide the spatial length of the lattice as parameter &#39;L&#39;.&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.ms.dat&quot;</span>
-
-    <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">files</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
-        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">found</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">files</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span><span class="p">):</span>
-            <span class="n">found</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-            <span class="k">break</span>
-        <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">found</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s2">&quot;*&quot;</span> <span class="o">+</span> <span class="n">postfix</span><span class="p">):</span>
-                <span class="n">files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
-    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
-
-    <span class="n">zeuthen</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;Zeuthen_flow&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">zeuthen</span> <span class="ow">and</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Zeuthen flow can only be used for version==sfqcd&#39;</span><span class="p">)</span>
-
-    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
-        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-
-            <span class="n">Q</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">traj_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-                <span class="k">if</span> <span class="n">zeuthen</span><span class="p">:</span>
-                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">8</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="n">zthfl</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>  <span class="c1"># Zeuthen flow -&gt; if it&#39;s equal to 2 it means that the Zeuthen flow is also &#39;measured&#39; (apart from the Wilson flow)</span>
-                <span class="n">ncs</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># number of different values for c in t_flow=1/8 c² L² -&gt; measurements done for ncs c&#39;s</span>
-                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>  <span class="c1"># lattice T/a</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-                <span class="n">Ls</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="k">if</span><span class="p">(</span><span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">and</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">2</span><span class="p">]):</span>
-                    <span class="n">L</span> <span class="o">=</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">supposed_L</span> <span class="o">==</span> <span class="n">L</span><span class="p">)</span> <span class="ow">and</span> <span class="n">supposed_L</span><span class="p">:</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It seems the length given in the header and by you contradict each other&quot;</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Found more than one spatial length in header!&quot;</span><span class="p">)</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">16</span><span class="p">)</span>
-                <span class="n">header2</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;dd&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="n">tol</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="n">cmax</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># highest value of c used</span>
-
-                <span class="k">if</span> <span class="n">c</span> <span class="o">&gt;</span> <span class="n">cmax</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Flow has been determined between c=0 and c=</span><span class="si">%lf</span><span class="s1"> with tolerance </span><span class="si">%lf</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">cmax</span><span class="p">,</span> <span class="n">tol</span><span class="p">))</span>
-
-                <span class="k">if</span><span class="p">(</span><span class="n">zthfl</span> <span class="o">==</span> <span class="mi">2</span><span class="p">):</span>
-                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">2</span>  <span class="c1"># number of flows</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">1</span>
-                <span class="n">iobs</span> <span class="o">=</span> <span class="mi">8</span> <span class="o">*</span> <span class="n">nfl</span>  <span class="c1"># number of flow observables calculated</span>
-
-                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
-                        <span class="k">break</span>
-                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>   <span class="c1"># trajectory number when measurement was done</span>
-
-                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">iobs</span><span class="p">):</span>
-                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">)</span>
-                            <span class="k">if</span> <span class="p">(</span><span class="n">i</span> <span class="o">==</span> <span class="n">obspos</span><span class="p">):</span>  <span class="c1"># determines the flow observable -&gt; i=0 &lt;-&gt; Zeuthen flow</span>
-                                <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">,</span> <span class="n">t</span><span class="p">))</span>
-
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
-                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
-                <span class="c1"># step size in integration steps &quot;dnms&quot;</span>
-                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-                <span class="c1"># number of measurements, so &quot;ntot&quot;/dn</span>
-                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                <span class="c1"># lattice T/a</span>
-                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
-
-                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
-                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-
-                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
-                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
-                        <span class="k">break</span>
-                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
-                    <span class="c1"># Wsl</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="c1"># Ysl</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="c1"># Qsl, which is asked for in this method</span>
-                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="c1"># unpack the array of Qtops,</span>
-                    <span class="c1"># on each timeslice t=0,...,tmax-1 and the</span>
-                    <span class="c1"># measurement number in = 0...nn (see README.qcd1)</span>
-                    <span class="n">tmpd</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
-                    <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmpd</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in stepsize found&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="s1">&#39;steps&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">steps</span> <span class="o">!=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;steps and the found stepsize are not the same&quot;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">steps</span> <span class="o">=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-
-        <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">tr</span> <span class="o">//</span> <span class="n">steps</span> <span class="o">//</span> <span class="n">dtr_cnfg</span> <span class="k">for</span> <span class="n">tr</span> <span class="ow">in</span> <span class="n">traj_list</span><span class="p">])</span>
-        <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
-            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config. Offset = </span><span class="si">%d</span><span class="s1"> configs (</span><span class="si">%d</span><span class="s1"> trajectories / cycles)&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                <span class="n">offset</span><span class="p">,</span> <span class="n">offset</span> <span class="o">*</span> <span class="n">steps</span><span class="p">))</span>
-            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-
-        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
-            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
-                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
-
-        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-            <span class="n">cstepsize</span> <span class="o">=</span> <span class="n">cmax</span> <span class="o">/</span> <span class="n">ncs</span>
-            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">c</span> <span class="o">/</span> <span class="n">cstepsize</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">t_aim</span> <span class="o">=</span> <span class="p">(</span><span class="n">c</span> <span class="o">*</span> <span class="n">L</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="mi">8</span>
-            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">t_aim</span> <span class="o">/</span> <span class="n">eps</span> <span class="o">/</span> <span class="n">dn</span><span class="p">)</span>
-
-        <span class="n">Q_sum</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Q</span><span class="p">):</span>
-            <span class="n">Q_sum</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">sum</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span><span class="p">:</span><span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span><span class="p">])</span>
-                         <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
-        <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">)</span> <span class="o">//</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)):</span>
-                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">i</span> <span class="o">*</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="n">index_aim</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">):</span>
-                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">dtr_cnfg</span> <span class="o">*</span> <span class="n">i</span><span class="p">][</span><span class="n">index_aim</span><span class="p">])</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;qtops and traj_list dont have the same length&quot;</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
-            <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[</span><span class="nb">round</span><span class="p">(</span><span class="n">q</span><span class="p">)</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">Q_top</span><span class="p">]</span>
-
-        <span class="n">truncated_file</span> <span class="o">=</span> <span class="n">file</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">postfix</span><span class="p">)]</span>
-
-        <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="k">try</span><span class="p">:</span>
-                <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
-            <span class="n">ens_name</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span>
-            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ens_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_file</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;names&quot;</span><span class="p">)</span>
-            <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
-        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span>
-
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]),</span> <span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
-    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">deltas</span><span class="p">[</span><span class="n">nrep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">nrep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_qtop-523"><a href="#read_qtop-523"><span class="linenos">523</span></a><span class="k">def</span> <span class="nf">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">dtr_cnfg</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_qtop-524"><a href="#read_qtop-524"><span class="linenos">524</span></a>    <span class="sd">&quot;&quot;&quot;Read the topologial charge based on openQCD gradient flow measurements.</span>
+</span><span id="read_qtop-525"><a href="#read_qtop-525"><span class="linenos">525</span></a>
+</span><span id="read_qtop-526"><a href="#read_qtop-526"><span class="linenos">526</span></a><span class="sd">    Parameters</span>
+</span><span id="read_qtop-527"><a href="#read_qtop-527"><span class="linenos">527</span></a><span class="sd">    ----------</span>
+</span><span id="read_qtop-528"><a href="#read_qtop-528"><span class="linenos">528</span></a><span class="sd">    path : str</span>
+</span><span id="read_qtop-529"><a href="#read_qtop-529"><span class="linenos">529</span></a><span class="sd">        path of the measurement files</span>
+</span><span id="read_qtop-530"><a href="#read_qtop-530"><span class="linenos">530</span></a><span class="sd">    prefix : str</span>
+</span><span id="read_qtop-531"><a href="#read_qtop-531"><span class="linenos">531</span></a><span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat.</span>
+</span><span id="read_qtop-532"><a href="#read_qtop-532"><span class="linenos">532</span></a><span class="sd">        Ignored if file names are passed explicitly via keyword files.</span>
+</span><span id="read_qtop-533"><a href="#read_qtop-533"><span class="linenos">533</span></a><span class="sd">    c : double</span>
+</span><span id="read_qtop-534"><a href="#read_qtop-534"><span class="linenos">534</span></a><span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L.</span>
+</span><span id="read_qtop-535"><a href="#read_qtop-535"><span class="linenos">535</span></a><span class="sd">    dtr_cnfg : int</span>
+</span><span id="read_qtop-536"><a href="#read_qtop-536"><span class="linenos">536</span></a><span class="sd">        (optional) parameter that specifies the number of measurements</span>
+</span><span id="read_qtop-537"><a href="#read_qtop-537"><span class="linenos">537</span></a><span class="sd">        between two configs.</span>
+</span><span id="read_qtop-538"><a href="#read_qtop-538"><span class="linenos">538</span></a><span class="sd">        If it is not set, the distance between two measurements</span>
+</span><span id="read_qtop-539"><a href="#read_qtop-539"><span class="linenos">539</span></a><span class="sd">        in the file is assumed to be the distance between two configurations.</span>
+</span><span id="read_qtop-540"><a href="#read_qtop-540"><span class="linenos">540</span></a><span class="sd">    steps : int</span>
+</span><span id="read_qtop-541"><a href="#read_qtop-541"><span class="linenos">541</span></a><span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
+</span><span id="read_qtop-542"><a href="#read_qtop-542"><span class="linenos">542</span></a><span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
+</span><span id="read_qtop-543"><a href="#read_qtop-543"><span class="linenos">543</span></a><span class="sd">    version : str</span>
+</span><span id="read_qtop-544"><a href="#read_qtop-544"><span class="linenos">544</span></a><span class="sd">        Either openQCD or sfqcd, depending on the data.</span>
+</span><span id="read_qtop-545"><a href="#read_qtop-545"><span class="linenos">545</span></a><span class="sd">    L : int</span>
+</span><span id="read_qtop-546"><a href="#read_qtop-546"><span class="linenos">546</span></a><span class="sd">        spatial length of the lattice in L/a.</span>
+</span><span id="read_qtop-547"><a href="#read_qtop-547"><span class="linenos">547</span></a><span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
+</span><span id="read_qtop-548"><a href="#read_qtop-548"><span class="linenos">548</span></a><span class="sd">        this in the header</span>
+</span><span id="read_qtop-549"><a href="#read_qtop-549"><span class="linenos">549</span></a><span class="sd">    r_start : list</span>
+</span><span id="read_qtop-550"><a href="#read_qtop-550"><span class="linenos">550</span></a><span class="sd">        list which contains the first config to be read for each replicum.</span>
+</span><span id="read_qtop-551"><a href="#read_qtop-551"><span class="linenos">551</span></a><span class="sd">    r_stop : list</span>
+</span><span id="read_qtop-552"><a href="#read_qtop-552"><span class="linenos">552</span></a><span class="sd">        list which contains the last config to be read for each replicum.</span>
+</span><span id="read_qtop-553"><a href="#read_qtop-553"><span class="linenos">553</span></a><span class="sd">    files : list</span>
+</span><span id="read_qtop-554"><a href="#read_qtop-554"><span class="linenos">554</span></a><span class="sd">        specify the exact files that need to be read</span>
+</span><span id="read_qtop-555"><a href="#read_qtop-555"><span class="linenos">555</span></a><span class="sd">        from path, practical if e.g. only one replicum is needed</span>
+</span><span id="read_qtop-556"><a href="#read_qtop-556"><span class="linenos">556</span></a><span class="sd">    names : list</span>
+</span><span id="read_qtop-557"><a href="#read_qtop-557"><span class="linenos">557</span></a><span class="sd">        Alternative labeling for replicas/ensembles.</span>
+</span><span id="read_qtop-558"><a href="#read_qtop-558"><span class="linenos">558</span></a><span class="sd">        Has to have the appropriate length.</span>
+</span><span id="read_qtop-559"><a href="#read_qtop-559"><span class="linenos">559</span></a><span class="sd">    Zeuthen_flow : bool</span>
+</span><span id="read_qtop-560"><a href="#read_qtop-560"><span class="linenos">560</span></a><span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
+</span><span id="read_qtop-561"><a href="#read_qtop-561"><span class="linenos">561</span></a><span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
+</span><span id="read_qtop-562"><a href="#read_qtop-562"><span class="linenos">562</span></a><span class="sd">    integer_charge : bool</span>
+</span><span id="read_qtop-563"><a href="#read_qtop-563"><span class="linenos">563</span></a><span class="sd">        If True, the charge is rounded towards the nearest integer on each config.</span>
+</span><span id="read_qtop-564"><a href="#read_qtop-564"><span class="linenos">564</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_qtop-565"><a href="#read_qtop-565"><span class="linenos">565</span></a>    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;openQCD&quot;</span><span class="p">,</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">]</span>
+</span><span id="read_qtop-566"><a href="#read_qtop-566"><span class="linenos">566</span></a>
+</span><span id="read_qtop-567"><a href="#read_qtop-567"><span class="linenos">567</span></a>    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
+</span><span id="read_qtop-568"><a href="#read_qtop-568"><span class="linenos">568</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown openQCD version.&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-569"><a href="#read_qtop-569"><span class="linenos">569</span></a>    <span class="k">if</span> <span class="s2">&quot;steps&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-570"><a href="#read_qtop-570"><span class="linenos">570</span></a>        <span class="n">steps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;steps&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-571"><a href="#read_qtop-571"><span class="linenos">571</span></a>    <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;sfqcd&quot;</span><span class="p">:</span>
+</span><span id="read_qtop-572"><a href="#read_qtop-572"><span class="linenos">572</span></a>        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-573"><a href="#read_qtop-573"><span class="linenos">573</span></a>            <span class="n">supposed_L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-574"><a href="#read_qtop-574"><span class="linenos">574</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-575"><a href="#read_qtop-575"><span class="linenos">575</span></a>            <span class="n">supposed_L</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="read_qtop-576"><a href="#read_qtop-576"><span class="linenos">576</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.gfms.dat&quot;</span>
+</span><span id="read_qtop-577"><a href="#read_qtop-577"><span class="linenos">577</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-578"><a href="#read_qtop-578"><span class="linenos">578</span></a>        <span class="k">if</span> <span class="s2">&quot;L&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-579"><a href="#read_qtop-579"><span class="linenos">579</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version of openQCD needs you to provide the spatial length of the lattice as parameter &#39;L&#39;.&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-580"><a href="#read_qtop-580"><span class="linenos">580</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-581"><a href="#read_qtop-581"><span class="linenos">581</span></a>            <span class="n">L</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;L&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-582"><a href="#read_qtop-582"><span class="linenos">582</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s2">&quot;.ms.dat&quot;</span>
+</span><span id="read_qtop-583"><a href="#read_qtop-583"><span class="linenos">583</span></a>
+</span><span id="read_qtop-584"><a href="#read_qtop-584"><span class="linenos">584</span></a>    <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-585"><a href="#read_qtop-585"><span class="linenos">585</span></a>        <span class="n">files</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-586"><a href="#read_qtop-586"><span class="linenos">586</span></a>        <span class="n">postfix</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span>
+</span><span id="read_qtop-587"><a href="#read_qtop-587"><span class="linenos">587</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-588"><a href="#read_qtop-588"><span class="linenos">588</span></a>        <span class="n">found</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-589"><a href="#read_qtop-589"><span class="linenos">589</span></a>        <span class="n">files</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-590"><a href="#read_qtop-590"><span class="linenos">590</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span><span class="p">):</span>
+</span><span id="read_qtop-591"><a href="#read_qtop-591"><span class="linenos">591</span></a>            <span class="n">found</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="read_qtop-592"><a href="#read_qtop-592"><span class="linenos">592</span></a>            <span class="k">break</span>
+</span><span id="read_qtop-593"><a href="#read_qtop-593"><span class="linenos">593</span></a>        <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="n">found</span><span class="p">:</span>
+</span><span id="read_qtop-594"><a href="#read_qtop-594"><span class="linenos">594</span></a>            <span class="k">if</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">f</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s2">&quot;*&quot;</span> <span class="o">+</span> <span class="n">postfix</span><span class="p">):</span>
+</span><span id="read_qtop-595"><a href="#read_qtop-595"><span class="linenos">595</span></a>                <span class="n">files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
+</span><span id="read_qtop-596"><a href="#read_qtop-596"><span class="linenos">596</span></a>
+</span><span id="read_qtop-597"><a href="#read_qtop-597"><span class="linenos">597</span></a>    <span class="k">if</span> <span class="s1">&#39;r_start&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-598"><a href="#read_qtop-598"><span class="linenos">598</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_start&#39;</span><span class="p">)</span>
+</span><span id="read_qtop-599"><a href="#read_qtop-599"><span class="linenos">599</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_start</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
+</span><span id="read_qtop-600"><a href="#read_qtop-600"><span class="linenos">600</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_start does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="read_qtop-601"><a href="#read_qtop-601"><span class="linenos">601</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="k">else</span> <span class="kc">None</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">r_start</span><span class="p">]</span>
+</span><span id="read_qtop-602"><a href="#read_qtop-602"><span class="linenos">602</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-603"><a href="#read_qtop-603"><span class="linenos">603</span></a>        <span class="n">r_start</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
+</span><span id="read_qtop-604"><a href="#read_qtop-604"><span class="linenos">604</span></a>
+</span><span id="read_qtop-605"><a href="#read_qtop-605"><span class="linenos">605</span></a>    <span class="k">if</span> <span class="s1">&#39;r_stop&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-606"><a href="#read_qtop-606"><span class="linenos">606</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;r_stop&#39;</span><span class="p">)</span>
+</span><span id="read_qtop-607"><a href="#read_qtop-607"><span class="linenos">607</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">r_stop</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
+</span><span id="read_qtop-608"><a href="#read_qtop-608"><span class="linenos">608</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;r_stop does not match number of replicas&#39;</span><span class="p">)</span>
+</span><span id="read_qtop-609"><a href="#read_qtop-609"><span class="linenos">609</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-610"><a href="#read_qtop-610"><span class="linenos">610</span></a>        <span class="n">r_stop</span> <span class="o">=</span> <span class="p">[</span><span class="kc">None</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">files</span><span class="p">)</span>
+</span><span id="read_qtop-611"><a href="#read_qtop-611"><span class="linenos">611</span></a>    <span class="n">rep_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-612"><a href="#read_qtop-612"><span class="linenos">612</span></a>
+</span><span id="read_qtop-613"><a href="#read_qtop-613"><span class="linenos">613</span></a>    <span class="n">zeuthen</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;Zeuthen_flow&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span>
+</span><span id="read_qtop-614"><a href="#read_qtop-614"><span class="linenos">614</span></a>    <span class="k">if</span> <span class="n">zeuthen</span> <span class="ow">and</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="read_qtop-615"><a href="#read_qtop-615"><span class="linenos">615</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Zeuthen flow can only be used for version==sfqcd&#39;</span><span class="p">)</span>
+</span><span id="read_qtop-616"><a href="#read_qtop-616"><span class="linenos">616</span></a>
+</span><span id="read_qtop-617"><a href="#read_qtop-617"><span class="linenos">617</span></a>    <span class="n">r_start_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-618"><a href="#read_qtop-618"><span class="linenos">618</span></a>    <span class="n">r_stop_index</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-619"><a href="#read_qtop-619"><span class="linenos">619</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-620"><a href="#read_qtop-620"><span class="linenos">620</span></a>    <span class="n">configlist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-621"><a href="#read_qtop-621"><span class="linenos">621</span></a>    <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">files</span><span class="p">):</span>
+</span><span id="read_qtop-622"><a href="#read_qtop-622"><span class="linenos">622</span></a>        <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s2">&quot;/&quot;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s2">&quot;rb&quot;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="read_qtop-623"><a href="#read_qtop-623"><span class="linenos">623</span></a>
+</span><span id="read_qtop-624"><a href="#read_qtop-624"><span class="linenos">624</span></a>            <span class="n">Q</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-625"><a href="#read_qtop-625"><span class="linenos">625</span></a>            <span class="n">traj_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-626"><a href="#read_qtop-626"><span class="linenos">626</span></a>            <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="read_qtop-627"><a href="#read_qtop-627"><span class="linenos">627</span></a>                <span class="k">if</span> <span class="n">zeuthen</span><span class="p">:</span>
+</span><span id="read_qtop-628"><a href="#read_qtop-628"><span class="linenos">628</span></a>                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_qtop-629"><a href="#read_qtop-629"><span class="linenos">629</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-630"><a href="#read_qtop-630"><span class="linenos">630</span></a>                    <span class="n">obspos</span> <span class="o">=</span> <span class="mi">8</span>
+</span><span id="read_qtop-631"><a href="#read_qtop-631"><span class="linenos">631</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="read_qtop-632"><a href="#read_qtop-632"><span class="linenos">632</span></a>                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_qtop-633"><a href="#read_qtop-633"><span class="linenos">633</span></a>                <span class="n">zthfl</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>  <span class="c1"># Zeuthen flow -&gt; if it&#39;s equal to 2 it means that the Zeuthen flow is also &#39;measured&#39; (apart from the Wilson flow)</span>
+</span><span id="read_qtop-634"><a href="#read_qtop-634"><span class="linenos">634</span></a>                <span class="n">ncs</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># number of different values for c in t_flow=1/8 c² L² -&gt; measurements done for ncs c&#39;s</span>
+</span><span id="read_qtop-635"><a href="#read_qtop-635"><span class="linenos">635</span></a>                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>  <span class="c1"># lattice T/a</span>
+</span><span id="read_qtop-636"><a href="#read_qtop-636"><span class="linenos">636</span></a>
+</span><span id="read_qtop-637"><a href="#read_qtop-637"><span class="linenos">637</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="read_qtop-638"><a href="#read_qtop-638"><span class="linenos">638</span></a>                <span class="n">Ls</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_qtop-639"><a href="#read_qtop-639"><span class="linenos">639</span></a>                <span class="k">if</span><span class="p">(</span><span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">and</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">2</span><span class="p">]):</span>
+</span><span id="read_qtop-640"><a href="#read_qtop-640"><span class="linenos">640</span></a>                    <span class="n">L</span> <span class="o">=</span> <span class="n">Ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_qtop-641"><a href="#read_qtop-641"><span class="linenos">641</span></a>                    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">supposed_L</span> <span class="o">==</span> <span class="n">L</span><span class="p">)</span> <span class="ow">and</span> <span class="n">supposed_L</span><span class="p">:</span>
+</span><span id="read_qtop-642"><a href="#read_qtop-642"><span class="linenos">642</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It seems the length given in the header and by you contradict each other&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-643"><a href="#read_qtop-643"><span class="linenos">643</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-644"><a href="#read_qtop-644"><span class="linenos">644</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Found more than one spatial length in header!&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-645"><a href="#read_qtop-645"><span class="linenos">645</span></a>
+</span><span id="read_qtop-646"><a href="#read_qtop-646"><span class="linenos">646</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">16</span><span class="p">)</span>
+</span><span id="read_qtop-647"><a href="#read_qtop-647"><span class="linenos">647</span></a>                <span class="n">header2</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;dd&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_qtop-648"><a href="#read_qtop-648"><span class="linenos">648</span></a>                <span class="n">tol</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_qtop-649"><a href="#read_qtop-649"><span class="linenos">649</span></a>                <span class="n">cmax</span> <span class="o">=</span> <span class="n">header2</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>  <span class="c1"># highest value of c used</span>
+</span><span id="read_qtop-650"><a href="#read_qtop-650"><span class="linenos">650</span></a>
+</span><span id="read_qtop-651"><a href="#read_qtop-651"><span class="linenos">651</span></a>                <span class="k">if</span> <span class="n">c</span> <span class="o">&gt;</span> <span class="n">cmax</span><span class="p">:</span>
+</span><span id="read_qtop-652"><a href="#read_qtop-652"><span class="linenos">652</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Flow has been determined between c=0 and c=</span><span class="si">%lf</span><span class="s1"> with tolerance </span><span class="si">%lf</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">cmax</span><span class="p">,</span> <span class="n">tol</span><span class="p">))</span>
+</span><span id="read_qtop-653"><a href="#read_qtop-653"><span class="linenos">653</span></a>
+</span><span id="read_qtop-654"><a href="#read_qtop-654"><span class="linenos">654</span></a>                <span class="k">if</span><span class="p">(</span><span class="n">zthfl</span> <span class="o">==</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="read_qtop-655"><a href="#read_qtop-655"><span class="linenos">655</span></a>                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">2</span>  <span class="c1"># number of flows</span>
+</span><span id="read_qtop-656"><a href="#read_qtop-656"><span class="linenos">656</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-657"><a href="#read_qtop-657"><span class="linenos">657</span></a>                    <span class="n">nfl</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_qtop-658"><a href="#read_qtop-658"><span class="linenos">658</span></a>                <span class="n">iobs</span> <span class="o">=</span> <span class="mi">8</span> <span class="o">*</span> <span class="n">nfl</span>  <span class="c1"># number of flow observables calculated</span>
+</span><span id="read_qtop-659"><a href="#read_qtop-659"><span class="linenos">659</span></a>
+</span><span id="read_qtop-660"><a href="#read_qtop-660"><span class="linenos">660</span></a>                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_qtop-661"><a href="#read_qtop-661"><span class="linenos">661</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_qtop-662"><a href="#read_qtop-662"><span class="linenos">662</span></a>                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="read_qtop-663"><a href="#read_qtop-663"><span class="linenos">663</span></a>                        <span class="k">break</span>
+</span><span id="read_qtop-664"><a href="#read_qtop-664"><span class="linenos">664</span></a>                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>   <span class="c1"># trajectory number when measurement was done</span>
+</span><span id="read_qtop-665"><a href="#read_qtop-665"><span class="linenos">665</span></a>
+</span><span id="read_qtop-666"><a href="#read_qtop-666"><span class="linenos">666</span></a>                    <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="read_qtop-667"><a href="#read_qtop-667"><span class="linenos">667</span></a>                        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">iobs</span><span class="p">):</span>
+</span><span id="read_qtop-668"><a href="#read_qtop-668"><span class="linenos">668</span></a>                            <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">)</span>
+</span><span id="read_qtop-669"><a href="#read_qtop-669"><span class="linenos">669</span></a>                            <span class="k">if</span> <span class="p">(</span><span class="n">i</span> <span class="o">==</span> <span class="n">obspos</span><span class="p">):</span>  <span class="c1"># determines the flow observable -&gt; i=0 &lt;-&gt; Zeuthen flow</span>
+</span><span id="read_qtop-670"><a href="#read_qtop-670"><span class="linenos">670</span></a>                                <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span><span class="p">,</span> <span class="n">t</span><span class="p">))</span>
+</span><span id="read_qtop-671"><a href="#read_qtop-671"><span class="linenos">671</span></a>
+</span><span id="read_qtop-672"><a href="#read_qtop-672"><span class="linenos">672</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-673"><a href="#read_qtop-673"><span class="linenos">673</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">12</span><span class="p">)</span>
+</span><span id="read_qtop-674"><a href="#read_qtop-674"><span class="linenos">674</span></a>                <span class="n">header</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;&lt;iii&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_qtop-675"><a href="#read_qtop-675"><span class="linenos">675</span></a>                <span class="c1"># step size in integration steps &quot;dnms&quot;</span>
+</span><span id="read_qtop-676"><a href="#read_qtop-676"><span class="linenos">676</span></a>                <span class="n">dn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_qtop-677"><a href="#read_qtop-677"><span class="linenos">677</span></a>                <span class="c1"># number of measurements, so &quot;ntot&quot;/dn</span>
+</span><span id="read_qtop-678"><a href="#read_qtop-678"><span class="linenos">678</span></a>                <span class="n">nn</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="read_qtop-679"><a href="#read_qtop-679"><span class="linenos">679</span></a>                <span class="c1"># lattice T/a</span>
+</span><span id="read_qtop-680"><a href="#read_qtop-680"><span class="linenos">680</span></a>                <span class="n">tmax</span> <span class="o">=</span> <span class="n">header</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
+</span><span id="read_qtop-681"><a href="#read_qtop-681"><span class="linenos">681</span></a>
+</span><span id="read_qtop-682"><a href="#read_qtop-682"><span class="linenos">682</span></a>                <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span><span class="p">)</span>
+</span><span id="read_qtop-683"><a href="#read_qtop-683"><span class="linenos">683</span></a>                <span class="n">eps</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_qtop-684"><a href="#read_qtop-684"><span class="linenos">684</span></a>
+</span><span id="read_qtop-685"><a href="#read_qtop-685"><span class="linenos">685</span></a>                <span class="k">while</span> <span class="mi">0</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_qtop-686"><a href="#read_qtop-686"><span class="linenos">686</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">4</span><span class="p">)</span>
+</span><span id="read_qtop-687"><a href="#read_qtop-687"><span class="linenos">687</span></a>                    <span class="k">if</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">t</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">4</span><span class="p">):</span>
+</span><span id="read_qtop-688"><a href="#read_qtop-688"><span class="linenos">688</span></a>                        <span class="k">break</span>
+</span><span id="read_qtop-689"><a href="#read_qtop-689"><span class="linenos">689</span></a>                    <span class="n">traj_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;i&#39;</span><span class="p">,</span> <span class="n">t</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="read_qtop-690"><a href="#read_qtop-690"><span class="linenos">690</span></a>                    <span class="c1"># Wsl</span>
+</span><span id="read_qtop-691"><a href="#read_qtop-691"><span class="linenos">691</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="read_qtop-692"><a href="#read_qtop-692"><span class="linenos">692</span></a>                    <span class="c1"># Ysl</span>
+</span><span id="read_qtop-693"><a href="#read_qtop-693"><span class="linenos">693</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="read_qtop-694"><a href="#read_qtop-694"><span class="linenos">694</span></a>                    <span class="c1"># Qsl, which is asked for in this method</span>
+</span><span id="read_qtop-695"><a href="#read_qtop-695"><span class="linenos">695</span></a>                    <span class="n">t</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="mi">8</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="read_qtop-696"><a href="#read_qtop-696"><span class="linenos">696</span></a>                    <span class="c1"># unpack the array of Qtops,</span>
+</span><span id="read_qtop-697"><a href="#read_qtop-697"><span class="linenos">697</span></a>                    <span class="c1"># on each timeslice t=0,...,tmax-1 and the</span>
+</span><span id="read_qtop-698"><a href="#read_qtop-698"><span class="linenos">698</span></a>                    <span class="c1"># measurement number in = 0...nn (see README.qcd1)</span>
+</span><span id="read_qtop-699"><a href="#read_qtop-699"><span class="linenos">699</span></a>                    <span class="n">tmpd</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="s1">&#39;d&#39;</span> <span class="o">*</span> <span class="n">tmax</span> <span class="o">*</span> <span class="p">(</span><span class="n">nn</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">t</span><span class="p">)</span>
+</span><span id="read_qtop-700"><a href="#read_qtop-700"><span class="linenos">700</span></a>                    <span class="n">Q</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmpd</span><span class="p">)</span>
+</span><span id="read_qtop-701"><a href="#read_qtop-701"><span class="linenos">701</span></a>
+</span><span id="read_qtop-702"><a href="#read_qtop-702"><span class="linenos">702</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)))</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_qtop-703"><a href="#read_qtop-703"><span class="linenos">703</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in stepsize found&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-704"><a href="#read_qtop-704"><span class="linenos">704</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-705"><a href="#read_qtop-705"><span class="linenos">705</span></a>            <span class="k">if</span> <span class="s1">&#39;steps&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-706"><a href="#read_qtop-706"><span class="linenos">706</span></a>                <span class="k">if</span> <span class="n">steps</span> <span class="o">!=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span>
+</span><span id="read_qtop-707"><a href="#read_qtop-707"><span class="linenos">707</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;steps and the found stepsize are not the same&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-708"><a href="#read_qtop-708"><span class="linenos">708</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-709"><a href="#read_qtop-709"><span class="linenos">709</span></a>                <span class="n">steps</span> <span class="o">=</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">traj_list</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="read_qtop-710"><a href="#read_qtop-710"><span class="linenos">710</span></a>
+</span><span id="read_qtop-711"><a href="#read_qtop-711"><span class="linenos">711</span></a>        <span class="n">configlist</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">tr</span> <span class="o">//</span> <span class="n">steps</span> <span class="o">//</span> <span class="n">dtr_cnfg</span> <span class="k">for</span> <span class="n">tr</span> <span class="ow">in</span> <span class="n">traj_list</span><span class="p">])</span>
+</span><span id="read_qtop-712"><a href="#read_qtop-712"><span class="linenos">712</span></a>        <span class="k">if</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_qtop-713"><a href="#read_qtop-713"><span class="linenos">713</span></a>            <span class="n">offset</span> <span class="o">=</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="read_qtop-714"><a href="#read_qtop-714"><span class="linenos">714</span></a>            <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s1">&#39;Assume thermalization and that the first measurement belongs to the first config. Offset = </span><span class="si">%d</span><span class="s1"> configs (</span><span class="si">%d</span><span class="s1"> trajectories / cycles)&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="read_qtop-715"><a href="#read_qtop-715"><span class="linenos">715</span></a>                <span class="n">offset</span><span class="p">,</span> <span class="n">offset</span> <span class="o">*</span> <span class="n">steps</span><span class="p">))</span>
+</span><span id="read_qtop-716"><a href="#read_qtop-716"><span class="linenos">716</span></a>            <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="o">-</span> <span class="n">offset</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="read_qtop-717"><a href="#read_qtop-717"><span class="linenos">717</span></a>
+</span><span id="read_qtop-718"><a href="#read_qtop-718"><span class="linenos">718</span></a>        <span class="k">if</span> <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_qtop-719"><a href="#read_qtop-719"><span class="linenos">719</span></a>            <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="read_qtop-720"><a href="#read_qtop-720"><span class="linenos">720</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-721"><a href="#read_qtop-721"><span class="linenos">721</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="read_qtop-722"><a href="#read_qtop-722"><span class="linenos">722</span></a>                <span class="n">r_start_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="read_qtop-723"><a href="#read_qtop-723"><span class="linenos">723</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="read_qtop-724"><a href="#read_qtop-724"><span class="linenos">724</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="read_qtop-725"><a href="#read_qtop-725"><span class="linenos">725</span></a>                    <span class="n">r_start</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="read_qtop-726"><a href="#read_qtop-726"><span class="linenos">726</span></a>
+</span><span id="read_qtop-727"><a href="#read_qtop-727"><span class="linenos">727</span></a>        <span class="k">if</span> <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="read_qtop-728"><a href="#read_qtop-728"><span class="linenos">728</span></a>            <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="read_qtop-729"><a href="#read_qtop-729"><span class="linenos">729</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-730"><a href="#read_qtop-730"><span class="linenos">730</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="read_qtop-731"><a href="#read_qtop-731"><span class="linenos">731</span></a>                <span class="n">r_stop_index</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">]))</span>
+</span><span id="read_qtop-732"><a href="#read_qtop-732"><span class="linenos">732</span></a>            <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+</span><span id="read_qtop-733"><a href="#read_qtop-733"><span class="linenos">733</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Config </span><span class="si">%d</span><span class="s1"> not in file with range [</span><span class="si">%d</span><span class="s1">, </span><span class="si">%d</span><span class="s1">]&#39;</span> <span class="o">%</span> <span class="p">(</span>
+</span><span id="read_qtop-734"><a href="#read_qtop-734"><span class="linenos">734</span></a>                    <span class="n">r_stop</span><span class="p">[</span><span class="n">rep</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> <span class="n">configlist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="read_qtop-735"><a href="#read_qtop-735"><span class="linenos">735</span></a>
+</span><span id="read_qtop-736"><a href="#read_qtop-736"><span class="linenos">736</span></a>        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="read_qtop-737"><a href="#read_qtop-737"><span class="linenos">737</span></a>            <span class="n">cstepsize</span> <span class="o">=</span> <span class="n">cmax</span> <span class="o">/</span> <span class="n">ncs</span>
+</span><span id="read_qtop-738"><a href="#read_qtop-738"><span class="linenos">738</span></a>            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">c</span> <span class="o">/</span> <span class="n">cstepsize</span><span class="p">)</span>
+</span><span id="read_qtop-739"><a href="#read_qtop-739"><span class="linenos">739</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-740"><a href="#read_qtop-740"><span class="linenos">740</span></a>            <span class="n">t_aim</span> <span class="o">=</span> <span class="p">(</span><span class="n">c</span> <span class="o">*</span> <span class="n">L</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">/</span> <span class="mi">8</span>
+</span><span id="read_qtop-741"><a href="#read_qtop-741"><span class="linenos">741</span></a>            <span class="n">index_aim</span> <span class="o">=</span> <span class="nb">round</span><span class="p">(</span><span class="n">t_aim</span> <span class="o">/</span> <span class="n">eps</span> <span class="o">/</span> <span class="n">dn</span><span class="p">)</span>
+</span><span id="read_qtop-742"><a href="#read_qtop-742"><span class="linenos">742</span></a>
+</span><span id="read_qtop-743"><a href="#read_qtop-743"><span class="linenos">743</span></a>        <span class="n">Q_sum</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-744"><a href="#read_qtop-744"><span class="linenos">744</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">Q</span><span class="p">):</span>
+</span><span id="read_qtop-745"><a href="#read_qtop-745"><span class="linenos">745</span></a>            <span class="n">Q_sum</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="nb">sum</span><span class="p">(</span><span class="n">item</span><span class="p">[</span><span class="n">current</span><span class="p">:</span><span class="n">current</span> <span class="o">+</span> <span class="n">tmax</span><span class="p">])</span>
+</span><span id="read_qtop-746"><a href="#read_qtop-746"><span class="linenos">746</span></a>                         <span class="k">for</span> <span class="n">current</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">item</span><span class="p">),</span> <span class="n">tmax</span><span class="p">)])</span>
+</span><span id="read_qtop-747"><a href="#read_qtop-747"><span class="linenos">747</span></a>        <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_qtop-748"><a href="#read_qtop-748"><span class="linenos">748</span></a>        <span class="k">if</span> <span class="n">version</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;sfqcd&#39;</span><span class="p">]:</span>
+</span><span id="read_qtop-749"><a href="#read_qtop-749"><span class="linenos">749</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">)</span> <span class="o">//</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)):</span>
+</span><span id="read_qtop-750"><a href="#read_qtop-750"><span class="linenos">750</span></a>                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">i</span> <span class="o">*</span> <span class="p">(</span><span class="n">ncs</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="n">index_aim</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="read_qtop-751"><a href="#read_qtop-751"><span class="linenos">751</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-752"><a href="#read_qtop-752"><span class="linenos">752</span></a>            <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">Q</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">):</span>
+</span><span id="read_qtop-753"><a href="#read_qtop-753"><span class="linenos">753</span></a>                <span class="n">Q_top</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_sum</span><span class="p">[</span><span class="n">dtr_cnfg</span> <span class="o">*</span> <span class="n">i</span><span class="p">][</span><span class="n">index_aim</span><span class="p">])</span>
+</span><span id="read_qtop-754"><a href="#read_qtop-754"><span class="linenos">754</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">traj_list</span><span class="p">)</span> <span class="o">//</span> <span class="n">dtr_cnfg</span><span class="p">:</span>
+</span><span id="read_qtop-755"><a href="#read_qtop-755"><span class="linenos">755</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;qtops and traj_list dont have the same length&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-756"><a href="#read_qtop-756"><span class="linenos">756</span></a>
+</span><span id="read_qtop-757"><a href="#read_qtop-757"><span class="linenos">757</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
+</span><span id="read_qtop-758"><a href="#read_qtop-758"><span class="linenos">758</span></a>            <span class="n">Q_top</span> <span class="o">=</span> <span class="p">[</span><span class="nb">round</span><span class="p">(</span><span class="n">q</span><span class="p">)</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">Q_top</span><span class="p">]</span>
+</span><span id="read_qtop-759"><a href="#read_qtop-759"><span class="linenos">759</span></a>
+</span><span id="read_qtop-760"><a href="#read_qtop-760"><span class="linenos">760</span></a>        <span class="n">truncated_file</span> <span class="o">=</span> <span class="n">file</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">postfix</span><span class="p">)]</span>
+</span><span id="read_qtop-761"><a href="#read_qtop-761"><span class="linenos">761</span></a>
+</span><span id="read_qtop-762"><a href="#read_qtop-762"><span class="linenos">762</span></a>        <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-763"><a href="#read_qtop-763"><span class="linenos">763</span></a>            <span class="k">try</span><span class="p">:</span>
+</span><span id="read_qtop-764"><a href="#read_qtop-764"><span class="linenos">764</span></a>                <span class="n">idx</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="read_qtop-765"><a href="#read_qtop-765"><span class="linenos">765</span></a>            <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="read_qtop-766"><a href="#read_qtop-766"><span class="linenos">766</span></a>                <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_qtop-767"><a href="#read_qtop-767"><span class="linenos">767</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-768"><a href="#read_qtop-768"><span class="linenos">768</span></a>            <span class="n">ens_name</span> <span class="o">=</span> <span class="n">truncated_file</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span>
+</span><span id="read_qtop-769"><a href="#read_qtop-769"><span class="linenos">769</span></a>            <span class="n">rep_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ens_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">truncated_file</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="read_qtop-770"><a href="#read_qtop-770"><span class="linenos">770</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_qtop-771"><a href="#read_qtop-771"><span class="linenos">771</span></a>            <span class="n">names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;names&quot;</span><span class="p">)</span>
+</span><span id="read_qtop-772"><a href="#read_qtop-772"><span class="linenos">772</span></a>            <span class="n">rep_names</span> <span class="o">=</span> <span class="n">names</span>
+</span><span id="read_qtop-773"><a href="#read_qtop-773"><span class="linenos">773</span></a>        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Q_top</span><span class="p">)</span>
+</span><span id="read_qtop-774"><a href="#read_qtop-774"><span class="linenos">774</span></a>
+</span><span id="read_qtop-775"><a href="#read_qtop-775"><span class="linenos">775</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[</span><span class="nb">range</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]]),</span> <span class="nb">int</span><span class="p">(</span><span class="n">configlist</span><span class="p">[</span><span class="n">rep</span><span class="p">][</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">rep</span><span class="p">]])</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> <span class="k">for</span> <span class="n">rep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
+</span><span id="read_qtop-776"><a href="#read_qtop-776"><span class="linenos">776</span></a>    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">deltas</span><span class="p">[</span><span class="n">nrep</span><span class="p">][</span><span class="n">r_start_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]:</span><span class="n">r_stop_index</span><span class="p">[</span><span class="n">nrep</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">nrep</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">))]</span>
+</span><span id="read_qtop-777"><a href="#read_qtop-777"><span class="linenos">777</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">rep_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">)</span>
+</span><span id="read_qtop-778"><a href="#read_qtop-778"><span class="linenos">778</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -1848,27 +1848,27 @@ If True, the charge is rounded towards the nearest integer on each config.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Returns the projection to the topological charge sector defined by target.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : Obs</span>
-<span class="sd">        Topological charge.</span>
-<span class="sd">    target : int</span>
-<span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">qtop</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You can not use a reweighted observable for reweighting!&#39;</span><span class="p">)</span>
-
-    <span class="n">proj_qtop</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
-        <span class="n">proj_qtop</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mi">1</span> <span class="k">if</span> <span class="nb">round</span><span class="p">(</span><span class="n">qtop</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">q</span><span class="p">)</span> <span class="o">==</span> <span class="n">target</span> <span class="k">else</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">]]))</span>
-
-    <span class="n">reto</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">proj_qtop</span><span class="p">,</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">qtop</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">])</span>
-    <span class="n">reto</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">qtop</span><span class="o">.</span><span class="n">is_merged</span>
-    <span class="k">return</span> <span class="n">reto</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="qtop_projection-781"><a href="#qtop_projection-781"><span class="linenos">781</span></a><span class="k">def</span> <span class="nf">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
+</span><span id="qtop_projection-782"><a href="#qtop_projection-782"><span class="linenos">782</span></a>    <span class="sd">&quot;&quot;&quot;Returns the projection to the topological charge sector defined by target.</span>
+</span><span id="qtop_projection-783"><a href="#qtop_projection-783"><span class="linenos">783</span></a>
+</span><span id="qtop_projection-784"><a href="#qtop_projection-784"><span class="linenos">784</span></a><span class="sd">    Parameters</span>
+</span><span id="qtop_projection-785"><a href="#qtop_projection-785"><span class="linenos">785</span></a><span class="sd">    ----------</span>
+</span><span id="qtop_projection-786"><a href="#qtop_projection-786"><span class="linenos">786</span></a><span class="sd">    path : Obs</span>
+</span><span id="qtop_projection-787"><a href="#qtop_projection-787"><span class="linenos">787</span></a><span class="sd">        Topological charge.</span>
+</span><span id="qtop_projection-788"><a href="#qtop_projection-788"><span class="linenos">788</span></a><span class="sd">    target : int</span>
+</span><span id="qtop_projection-789"><a href="#qtop_projection-789"><span class="linenos">789</span></a><span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
+</span><span id="qtop_projection-790"><a href="#qtop_projection-790"><span class="linenos">790</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="qtop_projection-791"><a href="#qtop_projection-791"><span class="linenos">791</span></a>    <span class="k">if</span> <span class="n">qtop</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="qtop_projection-792"><a href="#qtop_projection-792"><span class="linenos">792</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You can not use a reweighted observable for reweighting!&#39;</span><span class="p">)</span>
+</span><span id="qtop_projection-793"><a href="#qtop_projection-793"><span class="linenos">793</span></a>
+</span><span id="qtop_projection-794"><a href="#qtop_projection-794"><span class="linenos">794</span></a>    <span class="n">proj_qtop</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="qtop_projection-795"><a href="#qtop_projection-795"><span class="linenos">795</span></a>    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">:</span>
+</span><span id="qtop_projection-796"><a href="#qtop_projection-796"><span class="linenos">796</span></a>        <span class="n">proj_qtop</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="mi">1</span> <span class="k">if</span> <span class="nb">round</span><span class="p">(</span><span class="n">qtop</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">q</span><span class="p">)</span> <span class="o">==</span> <span class="n">target</span> <span class="k">else</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">]]))</span>
+</span><span id="qtop_projection-797"><a href="#qtop_projection-797"><span class="linenos">797</span></a>
+</span><span id="qtop_projection-798"><a href="#qtop_projection-798"><span class="linenos">798</span></a>    <span class="n">reto</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">proj_qtop</span><span class="p">,</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">qtop</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">qtop</span><span class="o">.</span><span class="n">names</span><span class="p">])</span>
+</span><span id="qtop_projection-799"><a href="#qtop_projection-799"><span class="linenos">799</span></a>    <span class="n">reto</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">qtop</span><span class="o">.</span><span class="n">is_merged</span>
+</span><span id="qtop_projection-800"><a href="#qtop_projection-800"><span class="linenos">800</span></a>    <span class="k">return</span> <span class="n">reto</span>
+</span></pre></div>
 
         </details>
 
@@ -1896,58 +1896,58 @@ Specifies the topological sector to be reweighted to (default 0)</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_qtop_sector</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Constructs reweighting factors to a specified topological sector.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path of the measurement files</span>
-<span class="sd">    prefix : str</span>
-<span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat</span>
-<span class="sd">    c : double</span>
-<span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L</span>
-<span class="sd">    target : int</span>
-<span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
-<span class="sd">    dtr_cnfg : int</span>
-<span class="sd">        (optional) parameter that specifies the number of trajectories</span>
-<span class="sd">        between two configs.</span>
-<span class="sd">        if it is not set, the distance between two measurements</span>
-<span class="sd">        in the file is assumed to be the distance between two configurations.</span>
-<span class="sd">    steps : int</span>
-<span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
-<span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
-<span class="sd">    version : str</span>
-<span class="sd">        version string of the openQCD (sfqcd) version used to create</span>
-<span class="sd">        the ensemble. Default is 2.0. May also be set to sfqcd.</span>
-<span class="sd">    L : int</span>
-<span class="sd">        spatial length of the lattice in L/a.</span>
-<span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
-<span class="sd">        this in the header</span>
-<span class="sd">    r_start : list</span>
-<span class="sd">        offset of the first ensemble, making it easier to match</span>
-<span class="sd">        later on with other Obs</span>
-<span class="sd">    r_stop : list</span>
-<span class="sd">        last configurations that need to be read (per replicum)</span>
-<span class="sd">    files : list</span>
-<span class="sd">        specify the exact files that need to be read</span>
-<span class="sd">        from path, practical if e.g. only one replicum is needed</span>
-<span class="sd">    names : list</span>
-<span class="sd">        Alternative labeling for replicas/ensembles.</span>
-<span class="sd">        Has to have the appropriate length</span>
-<span class="sd">    Zeuthen_flow : bool</span>
-<span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
-<span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;target&#39; has to be an integer.&quot;</span><span class="p">)</span>
-
-    <span class="n">kwargs</span><span class="p">[</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
-    <span class="n">qtop</span> <span class="o">=</span> <span class="n">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="n">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="n">target</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_qtop_sector-803"><a href="#read_qtop_sector-803"><span class="linenos">803</span></a><span class="k">def</span> <span class="nf">read_qtop_sector</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_qtop_sector-804"><a href="#read_qtop_sector-804"><span class="linenos">804</span></a>    <span class="sd">&quot;&quot;&quot;Constructs reweighting factors to a specified topological sector.</span>
+</span><span id="read_qtop_sector-805"><a href="#read_qtop_sector-805"><span class="linenos">805</span></a>
+</span><span id="read_qtop_sector-806"><a href="#read_qtop_sector-806"><span class="linenos">806</span></a><span class="sd">    Parameters</span>
+</span><span id="read_qtop_sector-807"><a href="#read_qtop_sector-807"><span class="linenos">807</span></a><span class="sd">    ----------</span>
+</span><span id="read_qtop_sector-808"><a href="#read_qtop_sector-808"><span class="linenos">808</span></a><span class="sd">    path : str</span>
+</span><span id="read_qtop_sector-809"><a href="#read_qtop_sector-809"><span class="linenos">809</span></a><span class="sd">        path of the measurement files</span>
+</span><span id="read_qtop_sector-810"><a href="#read_qtop_sector-810"><span class="linenos">810</span></a><span class="sd">    prefix : str</span>
+</span><span id="read_qtop_sector-811"><a href="#read_qtop_sector-811"><span class="linenos">811</span></a><span class="sd">        prefix of the measurement files, e.g. &lt;prefix&gt;_id0_r0.ms.dat</span>
+</span><span id="read_qtop_sector-812"><a href="#read_qtop_sector-812"><span class="linenos">812</span></a><span class="sd">    c : double</span>
+</span><span id="read_qtop_sector-813"><a href="#read_qtop_sector-813"><span class="linenos">813</span></a><span class="sd">        Smearing radius in units of the lattice extent, c = sqrt(8 t0) / L</span>
+</span><span id="read_qtop_sector-814"><a href="#read_qtop_sector-814"><span class="linenos">814</span></a><span class="sd">    target : int</span>
+</span><span id="read_qtop_sector-815"><a href="#read_qtop_sector-815"><span class="linenos">815</span></a><span class="sd">        Specifies the topological sector to be reweighted to (default 0)</span>
+</span><span id="read_qtop_sector-816"><a href="#read_qtop_sector-816"><span class="linenos">816</span></a><span class="sd">    dtr_cnfg : int</span>
+</span><span id="read_qtop_sector-817"><a href="#read_qtop_sector-817"><span class="linenos">817</span></a><span class="sd">        (optional) parameter that specifies the number of trajectories</span>
+</span><span id="read_qtop_sector-818"><a href="#read_qtop_sector-818"><span class="linenos">818</span></a><span class="sd">        between two configs.</span>
+</span><span id="read_qtop_sector-819"><a href="#read_qtop_sector-819"><span class="linenos">819</span></a><span class="sd">        if it is not set, the distance between two measurements</span>
+</span><span id="read_qtop_sector-820"><a href="#read_qtop_sector-820"><span class="linenos">820</span></a><span class="sd">        in the file is assumed to be the distance between two configurations.</span>
+</span><span id="read_qtop_sector-821"><a href="#read_qtop_sector-821"><span class="linenos">821</span></a><span class="sd">    steps : int</span>
+</span><span id="read_qtop_sector-822"><a href="#read_qtop_sector-822"><span class="linenos">822</span></a><span class="sd">        (optional) Distance between two configurations in units of trajectories /</span>
+</span><span id="read_qtop_sector-823"><a href="#read_qtop_sector-823"><span class="linenos">823</span></a><span class="sd">         cycles. Assumed to be the distance between two measurements * dtr_cnfg if not given</span>
+</span><span id="read_qtop_sector-824"><a href="#read_qtop_sector-824"><span class="linenos">824</span></a><span class="sd">    version : str</span>
+</span><span id="read_qtop_sector-825"><a href="#read_qtop_sector-825"><span class="linenos">825</span></a><span class="sd">        version string of the openQCD (sfqcd) version used to create</span>
+</span><span id="read_qtop_sector-826"><a href="#read_qtop_sector-826"><span class="linenos">826</span></a><span class="sd">        the ensemble. Default is 2.0. May also be set to sfqcd.</span>
+</span><span id="read_qtop_sector-827"><a href="#read_qtop_sector-827"><span class="linenos">827</span></a><span class="sd">    L : int</span>
+</span><span id="read_qtop_sector-828"><a href="#read_qtop_sector-828"><span class="linenos">828</span></a><span class="sd">        spatial length of the lattice in L/a.</span>
+</span><span id="read_qtop_sector-829"><a href="#read_qtop_sector-829"><span class="linenos">829</span></a><span class="sd">        HAS to be set if version != sfqcd, since openQCD does not provide</span>
+</span><span id="read_qtop_sector-830"><a href="#read_qtop_sector-830"><span class="linenos">830</span></a><span class="sd">        this in the header</span>
+</span><span id="read_qtop_sector-831"><a href="#read_qtop_sector-831"><span class="linenos">831</span></a><span class="sd">    r_start : list</span>
+</span><span id="read_qtop_sector-832"><a href="#read_qtop_sector-832"><span class="linenos">832</span></a><span class="sd">        offset of the first ensemble, making it easier to match</span>
+</span><span id="read_qtop_sector-833"><a href="#read_qtop_sector-833"><span class="linenos">833</span></a><span class="sd">        later on with other Obs</span>
+</span><span id="read_qtop_sector-834"><a href="#read_qtop_sector-834"><span class="linenos">834</span></a><span class="sd">    r_stop : list</span>
+</span><span id="read_qtop_sector-835"><a href="#read_qtop_sector-835"><span class="linenos">835</span></a><span class="sd">        last configurations that need to be read (per replicum)</span>
+</span><span id="read_qtop_sector-836"><a href="#read_qtop_sector-836"><span class="linenos">836</span></a><span class="sd">    files : list</span>
+</span><span id="read_qtop_sector-837"><a href="#read_qtop_sector-837"><span class="linenos">837</span></a><span class="sd">        specify the exact files that need to be read</span>
+</span><span id="read_qtop_sector-838"><a href="#read_qtop_sector-838"><span class="linenos">838</span></a><span class="sd">        from path, practical if e.g. only one replicum is needed</span>
+</span><span id="read_qtop_sector-839"><a href="#read_qtop_sector-839"><span class="linenos">839</span></a><span class="sd">    names : list</span>
+</span><span id="read_qtop_sector-840"><a href="#read_qtop_sector-840"><span class="linenos">840</span></a><span class="sd">        Alternative labeling for replicas/ensembles.</span>
+</span><span id="read_qtop_sector-841"><a href="#read_qtop_sector-841"><span class="linenos">841</span></a><span class="sd">        Has to have the appropriate length</span>
+</span><span id="read_qtop_sector-842"><a href="#read_qtop_sector-842"><span class="linenos">842</span></a><span class="sd">    Zeuthen_flow : bool</span>
+</span><span id="read_qtop_sector-843"><a href="#read_qtop_sector-843"><span class="linenos">843</span></a><span class="sd">        (optional) If True, the Zeuthen flow is used for Qtop. Only possible</span>
+</span><span id="read_qtop_sector-844"><a href="#read_qtop_sector-844"><span class="linenos">844</span></a><span class="sd">        for version==&#39;sfqcd&#39; If False, the Wilson flow is used.</span>
+</span><span id="read_qtop_sector-845"><a href="#read_qtop_sector-845"><span class="linenos">845</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_qtop_sector-846"><a href="#read_qtop_sector-846"><span class="linenos">846</span></a>
+</span><span id="read_qtop_sector-847"><a href="#read_qtop_sector-847"><span class="linenos">847</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">target</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+</span><span id="read_qtop_sector-848"><a href="#read_qtop_sector-848"><span class="linenos">848</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;target&#39; has to be an integer.&quot;</span><span class="p">)</span>
+</span><span id="read_qtop_sector-849"><a href="#read_qtop_sector-849"><span class="linenos">849</span></a>
+</span><span id="read_qtop_sector-850"><a href="#read_qtop_sector-850"><span class="linenos">850</span></a>    <span class="n">kwargs</span><span class="p">[</span><span class="s1">&#39;integer_charge&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="read_qtop_sector-851"><a href="#read_qtop_sector-851"><span class="linenos">851</span></a>    <span class="n">qtop</span> <span class="o">=</span> <span class="n">read_qtop</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">c</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="read_qtop_sector-852"><a href="#read_qtop_sector-852"><span class="linenos">852</span></a>
+</span><span id="read_qtop_sector-853"><a href="#read_qtop_sector-853"><span class="linenos">853</span></a>    <span class="k">return</span> <span class="n">qtop_projection</span><span class="p">(</span><span class="n">qtop</span><span class="p">,</span> <span class="n">target</span><span class="o">=</span><span class="n">target</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input/sfcf.html b/docs/pyerrors/input/sfcf.html
index bde7dd85..b5baed28 100644
--- a/docs/pyerrors/input/sfcf.html
+++ b/docs/pyerrors/input/sfcf.html
@@ -3,14 +3,14 @@
 <head>
     <meta charset="utf-8">
     <meta name="viewport" content="width=device-width, initial-scale=1">
-    <meta name="generator" content="pdoc 11.0.0"/>
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     <title>pyerrors.input.sfcf API documentation</title>
 
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@@ -54,7 +54,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
                 alt="pdoc logo"
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@@ -69,364 +69,364 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">fnmatch</span>
-<span class="kn">import</span> <span class="nn">re</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
-<span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
-<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">utils</span>
-
-
-<span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="n">cfg_separator</span><span class="o">=</span><span class="s2">&quot;n&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read sfcf c format from given folder structure.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    quarks: str</span>
-<span class="sd">        Label of the quarks used in the sfcf input file. e.g. &quot;quark quark&quot;</span>
-<span class="sd">        for version 0.0 this does NOT need to be given with the typical &quot; - &quot;</span>
-<span class="sd">        that is present in the output file,</span>
-<span class="sd">        this is done automatically for this version</span>
-<span class="sd">    noffset: int</span>
-<span class="sd">        Offset of the source (only relevant when wavefunctions are used)</span>
-<span class="sd">    wf: int</span>
-<span class="sd">        ID of wave function</span>
-<span class="sd">    wf2: int</span>
-<span class="sd">        ID of the second wavefunction</span>
-<span class="sd">        (only relevant for boundary-to-boundary correlation functions)</span>
-<span class="sd">    im: bool</span>
-<span class="sd">        if True, read imaginary instead of real part</span>
-<span class="sd">        of the correlation function.</span>
-<span class="sd">    corr_type : str</span>
-<span class="sd">        change between bi (boundary - inner) (default) bib (boundary - inner - boundary) and bb (boundary - boundary)</span>
-<span class="sd">        correlator types</span>
-<span class="sd">    names : list</span>
-<span class="sd">        Alternative labeling for replicas/ensembles.</span>
-<span class="sd">        Has to have the appropriate length</span>
-<span class="sd">    ens_name : str</span>
-<span class="sd">        replaces the name of the ensemble</span>
-<span class="sd">    version: str</span>
-<span class="sd">        version of SFCF, with which the measurement was done.</span>
-<span class="sd">        if the compact output option (-c) was specified,</span>
-<span class="sd">        append a &quot;c&quot; to the version (e.g. &quot;1.0c&quot;)</span>
-<span class="sd">        if the append output option (-a) was specified,</span>
-<span class="sd">        append an &quot;a&quot; to the version</span>
-<span class="sd">    cfg_separator : str</span>
-<span class="sd">        String that separates the ensemble identifier from the configuration number (default &#39;n&#39;).</span>
-<span class="sd">    replica: list</span>
-<span class="sd">        list of replica to be read, default is all</span>
-<span class="sd">    files: list</span>
-<span class="sd">        list of files to be read per replica, default is all.</span>
-<span class="sd">        for non-compact output format, hand the folders to be read here.</span>
-<span class="sd">    check_configs:</span>
-<span class="sd">        list of list of supposed configs, eg. [range(1,1000)]</span>
-<span class="sd">        for one replicum with 1000 configs</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;im&#39;</span><span class="p">):</span>
-        <span class="n">im</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;imaginary&#39;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">im</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;real&#39;</span>
-    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">reps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;replica&quot;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bb&#39;</span><span class="p">:</span>
-        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">single</span> <span class="o">=</span> <span class="kc">True</span>
-    <span class="k">elif</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bib&#39;</span><span class="p">:</span>
-        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
-    <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;0.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0a&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0a&quot;</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version is not known!&quot;</span><span class="p">)</span>
-    <span class="k">if</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;c&quot;</span><span class="p">):</span>
-        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="k">elif</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;a&quot;</span><span class="p">):</span>
-        <span class="n">appended</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">T</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">start</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ls</span> <span class="o">=</span> <span class="n">reps</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-            <span class="k">break</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-        <span class="c1"># Exclude folders with different names</span>
-        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
-                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="c1"># New version, to cope with ids, etc.</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">])</span> <span class="o">//</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">]))</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read&#39;</span><span class="p">,</span> <span class="n">part</span><span class="p">,</span> <span class="s1">&#39;part of&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span>
-          <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">new_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;names are not unique!&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Names does not have the required length&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">new_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">idx</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
-
-                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-        <span class="k">else</span><span class="p">:</span>
-
-            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
-                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="n">myentry</span> <span class="o">=</span> <span class="n">entry</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">idx</span> <span class="o">=</span> <span class="n">myentry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
-
-                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">myentry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
-            <span class="n">sub_ls</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">sub_ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
-                <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
-                    <span class="k">break</span>
-                <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
-                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
-                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
-                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s1">&#39;cfg*&#39;</span><span class="p">):</span>
-                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
-            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">no_cfg</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directroy, problem with file &quot;</span> <span class="o">+</span> <span class="n">cfg</span><span class="p">)</span>
-            <span class="n">rep_idl</span><span class="o">.</span><span class="n">sort</span><span class="p">()</span>
-            <span class="c1"># maybe there is a better way to print the idls</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="s1">&#39;:&#39;</span><span class="p">,</span> <span class="n">no_cfg</span><span class="p">,</span> <span class="s1">&#39; configurations&#39;</span><span class="p">)</span>
-            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
-            <span class="c1"># here we have found all the files we need to look into.</span>
-            <span class="k">if</span> <span class="n">i</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="c1"># here, we want to find the place within the file,</span>
-                <span class="c1"># where the correlator we need is stored.</span>
-                <span class="c1"># to do so, the pattern needed is put together</span>
-                <span class="c1"># from the input values</span>
-                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
-                    <span class="n">pattern</span> <span class="o">=</span> <span class="s2">&quot;# &quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot; : offset &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;, wf &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
-                    <span class="c1"># if b2b, a second wf is needed</span>
-                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
-                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot;, wf_2 &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
-                    <span class="n">qs</span> <span class="o">=</span> <span class="n">quarks</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
-                    <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot; : &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; - &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                    <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">file</span><span class="p">):</span>
-                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;</span> <span class="n">start</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span>
-                            <span class="k">break</span>
-                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start</span><span class="p">:</span>
-                            <span class="n">T</span> <span class="o">+=</span> <span class="mi">1</span>
-                        <span class="k">if</span> <span class="n">pattern</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                            <span class="n">read</span> <span class="o">=</span> <span class="mi">1</span>
-                            <span class="n">start</span> <span class="o">=</span> <span class="n">k</span> <span class="o">+</span> <span class="mi">1</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; entries found.&quot;</span><span class="p">)</span>
-                    <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
-                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
-                    <span class="c1"># and the file is parsed through to find the pattern</span>
-                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="c1"># for non-compactified versions of the files</span>
-                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-
-                    <span class="n">content</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
-                    <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">content</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
-                        <span class="n">start_read</span> <span class="o">=</span> <span class="n">content</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">+</span> <span class="mi">5</span> <span class="o">+</span> <span class="n">b2b</span>
-                        <span class="n">end_match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\n\s*\n&#39;</span><span class="p">,</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():])</span>
-                        <span class="n">T</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():]</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">end_match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">-</span> <span class="mi">4</span> <span class="o">-</span> <span class="n">b2b</span>
-                        <span class="k">assert</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="mi">0</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="n">T</span><span class="p">,</span> <span class="s1">&#39;entries, starting to read in line&#39;</span><span class="p">,</span> <span class="n">start_read</span><span class="p">)</span>
-                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator with pattern</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">pattern</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">not found.&#39;</span><span class="p">)</span>
-
-                <span class="c1"># we found where the correlator</span>
-                <span class="c1"># that is to be read is in the files</span>
-                <span class="c1"># after preparing the datastructure</span>
-                <span class="c1"># the correlators get parsed into...</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">):</span>
-                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-                        <span class="n">lines</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-                        <span class="c1"># check, if the correlator is in fact</span>
-                        <span class="c1"># printed completely</span>
-                        <span class="k">if</span><span class="p">(</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">lines</span><span class="p">)):</span>
-                            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;EOF before end of correlator data! Maybe &quot;</span> <span class="o">+</span> <span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; is corrupted?&quot;</span><span class="p">)</span>
-                        <span class="c1"># and start to read the correlator.</span>
-                        <span class="c1"># the range here is chosen like this,</span>
-                        <span class="c1"># since this allows for implementing</span>
-                        <span class="c1"># a security check for every read correlator later...</span>
-                        <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">start_read</span> <span class="o">-</span> <span class="mi">6</span><span class="p">,</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
-                            <span class="k">if</span> <span class="n">k</span> <span class="o">==</span> <span class="n">start_read</span> <span class="o">-</span> <span class="mi">5</span> <span class="o">-</span> <span class="n">b2b</span><span class="p">:</span>
-                                <span class="k">if</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="o">!=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">:</span>
-                                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Wrong format&#39;</span><span class="p">,</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span>
-                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
-                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
-                                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">:][</span><span class="n">im</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">cnfg</span><span class="p">,</span> <span class="n">subitem</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">):</span>
-                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">subitem</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-                        <span class="c1"># since the non-compatified files</span>
-                        <span class="c1"># are typically not so long,</span>
-                        <span class="c1"># we can iterate over the whole file.</span>
-                        <span class="c1"># here one can also implement the chekc from above.</span>
-                        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">fp</span><span class="p">):</span>
-                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
-                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
-                                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
-                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
-                                <span class="k">else</span><span class="p">:</span>
-                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="mi">1</span> <span class="o">+</span> <span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
-
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
-                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-                <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-        <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
-            <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
-            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-                <span class="n">content</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-                <span class="n">data_starts</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">content</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="s2">&quot;[run]&quot;</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                        <span class="n">data_starts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">linenumber</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">data_starts</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">))]))</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in file structure found, not all runs have the same output length&quot;</span><span class="p">)</span>
-                <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[:</span><span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span>
-                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;gauge_name&quot;</span><span class="p">):</span>
-                        <span class="n">gauge_line</span> <span class="o">=</span> <span class="n">linenumber</span>
-                    <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;[correlator]&quot;</span><span class="p">):</span>
-                        <span class="n">corr_line</span> <span class="o">=</span> <span class="n">linenumber</span>
-                        <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
-                        <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
-                            <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
-                        <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
-                            <span class="n">start_read</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">7</span> <span class="o">+</span> <span class="n">b2b</span>
-                            <span class="k">break</span>
-                <span class="n">endline</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span>
-                <span class="k">while</span> <span class="ow">not</span> <span class="n">chunk</span><span class="p">[</span><span class="n">endline</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">:</span>
-                    <span class="n">endline</span> <span class="o">+=</span> <span class="mi">1</span>
-                <span class="n">T</span> <span class="o">=</span> <span class="n">endline</span> <span class="o">-</span> <span class="n">start_read</span>
-                <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-                    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)))</span>
-                <span class="c1"># all other chunks should follow the same structure</span>
-                <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)):</span>
-                    <span class="n">start</span> <span class="o">=</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">cnfg</span><span class="p">]</span>
-                    <span class="n">stop</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                    <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">start</span><span class="p">:</span><span class="n">stop</span><span class="p">]</span>
-                    <span class="k">try</span><span class="p">:</span>
-                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directory, problem with chunk around line &quot;</span><span class="p">,</span> <span class="n">gauge_line</span><span class="p">)</span>
-
-                    <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
-                    <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
-                        <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
-                    <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">t</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">start_read</span><span class="p">:</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">]):</span>
-                            <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
-                            <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">rep</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
-            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s2">&quot;check_configs&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Checking for missing configs...&quot;</span><span class="p">)</span>
-        <span class="n">che</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;check_configs&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">che</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;check_configs has to be the same length as replica!&quot;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;checking &quot;</span> <span class="o">+</span> <span class="n">new_names</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
-            <span class="n">utils</span><span class="o">.</span><span class="n">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">[</span><span class="n">r</span><span class="p">],</span> <span class="n">che</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Done&quot;</span><span class="p">)</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">new_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">os</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">fnmatch</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">import</span> <span class="nn">re</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>  <span class="c1"># Thinly-wrapped numpy</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a><span class="kn">from</span> <span class="nn">..obs</span> <span class="kn">import</span> <span class="n">Obs</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">utils</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="n">cfg_separator</span><span class="o">=</span><span class="s2">&quot;n&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a>    <span class="sd">&quot;&quot;&quot;Read sfcf c format from given folder structure.</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="sd">    Parameters</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="sd">    ----------</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="sd">    quarks: str</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd">        Label of the quarks used in the sfcf input file. e.g. &quot;quark quark&quot;</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd">        for version 0.0 this does NOT need to be given with the typical &quot; - &quot;</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd">        that is present in the output file,</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a><span class="sd">        this is done automatically for this version</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a><span class="sd">    noffset: int</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a><span class="sd">        Offset of the source (only relevant when wavefunctions are used)</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a><span class="sd">    wf: int</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a><span class="sd">        ID of wave function</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a><span class="sd">    wf2: int</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a><span class="sd">        ID of the second wavefunction</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a><span class="sd">        (only relevant for boundary-to-boundary correlation functions)</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="sd">    im: bool</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a><span class="sd">        if True, read imaginary instead of real part</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a><span class="sd">        of the correlation function.</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="sd">    corr_type : str</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a><span class="sd">        change between bi (boundary - inner) (default) bib (boundary - inner - boundary) and bb (boundary - boundary)</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a><span class="sd">        correlator types</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a><span class="sd">    names : list</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a><span class="sd">        Alternative labeling for replicas/ensembles.</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a><span class="sd">        Has to have the appropriate length</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a><span class="sd">    ens_name : str</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a><span class="sd">        replaces the name of the ensemble</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a><span class="sd">    version: str</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a><span class="sd">        version of SFCF, with which the measurement was done.</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a><span class="sd">        if the compact output option (-c) was specified,</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a><span class="sd">        append a &quot;c&quot; to the version (e.g. &quot;1.0c&quot;)</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a><span class="sd">        if the append output option (-a) was specified,</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a><span class="sd">        append an &quot;a&quot; to the version</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a><span class="sd">    cfg_separator : str</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a><span class="sd">        String that separates the ensemble identifier from the configuration number (default &#39;n&#39;).</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a><span class="sd">    replica: list</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a><span class="sd">        list of replica to be read, default is all</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a><span class="sd">    files: list</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a><span class="sd">        list of files to be read per replica, default is all.</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a><span class="sd">        for non-compact output format, hand the folders to be read here.</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a><span class="sd">    check_configs:</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a><span class="sd">        list of list of supposed configs, eg. [range(1,1000)]</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a><span class="sd">        for one replicum with 1000 configs</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;im&#39;</span><span class="p">):</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>        <span class="n">im</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;imaginary&#39;</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>        <span class="n">im</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;real&#39;</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>        <span class="n">reps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;replica&quot;</span><span class="p">)</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>    <span class="k">if</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bb&#39;</span><span class="p">:</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>        <span class="n">single</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a>    <span class="k">elif</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bib&#39;</span><span class="p">:</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a>        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a>    <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>    <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a>    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;0.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0a&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0a&quot;</span><span class="p">]</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version is not known!&quot;</span><span class="p">)</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>    <span class="k">if</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;c&quot;</span><span class="p">):</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>        <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>    <span class="k">elif</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;a&quot;</span><span class="p">):</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>        <span class="n">appended</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>    <span class="n">T</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>    <span class="n">start</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>        <span class="n">ls</span> <span class="o">=</span> <span class="n">reps</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>            <span class="k">break</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>        <span class="c1"># Exclude folders with different names</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>            <span class="c1"># New version, to cope with ids, etc.</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">])</span> <span class="o">//</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">]))</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read&#39;</span><span class="p">,</span> <span class="n">part</span><span class="p">,</span> <span class="s1">&#39;part of&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>          <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>        <span class="n">new_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)):</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;names are not unique!&quot;</span><span class="p">)</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Names does not have the required length&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">)</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>        <span class="n">new_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a>            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a>                    <span class="n">idx</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a>                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a>                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a>            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a>                <span class="n">myentry</span> <span class="o">=</span> <span class="n">entry</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a>                    <span class="n">idx</span> <span class="o">=</span> <span class="n">myentry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a>                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">myentry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a>            <span class="n">sub_ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a>            <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a>                <span class="n">sub_ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a>                <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a>                <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span><span class="p">):</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a>                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a>                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a>                    <span class="k">break</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a>                <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a>                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a>                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a>                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a>                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a>                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s1">&#39;cfg*&#39;</span><span class="p">):</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a>                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a>            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>            <span class="n">no_cfg</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>            <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a>                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a>                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a>                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directroy, problem with file &quot;</span> <span class="o">+</span> <span class="n">cfg</span><span class="p">)</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a>            <span class="n">rep_idl</span><span class="o">.</span><span class="n">sort</span><span class="p">()</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a>            <span class="c1"># maybe there is a better way to print the idls</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>            <span class="nb">print</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="s1">&#39;:&#39;</span><span class="p">,</span> <span class="n">no_cfg</span><span class="p">,</span> <span class="s1">&#39; configurations&#39;</span><span class="p">)</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a>            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a>            <span class="c1"># here we have found all the files we need to look into.</span>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a>            <span class="k">if</span> <span class="n">i</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a>                <span class="c1"># here, we want to find the place within the file,</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a>                <span class="c1"># where the correlator we need is stored.</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a>                <span class="c1"># to do so, the pattern needed is put together</span>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>                <span class="c1"># from the input values</span>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a>                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a>                    <span class="n">pattern</span> <span class="o">=</span> <span class="s2">&quot;# &quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot; : offset &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;, wf &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a>                    <span class="c1"># if b2b, a second wf is needed</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a>                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a>                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot;, wf_2 &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a>                    <span class="n">qs</span> <span class="o">=</span> <span class="n">quarks</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a>                    <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot; : &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; - &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a>                    <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>                    <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">file</span><span class="p">):</span>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a>                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;</span> <span class="n">start</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a>                            <span class="k">break</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a>                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start</span><span class="p">:</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a>                            <span class="n">T</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a>                        <span class="k">if</span> <span class="n">pattern</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>                            <span class="n">read</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a>                            <span class="n">start</span> <span class="o">=</span> <span class="n">k</span> <span class="o">+</span> <span class="mi">1</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; entries found.&quot;</span><span class="p">)</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>                    <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a>                    <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a>                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a>                    <span class="c1"># and the file is parsed through to find the pattern</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a>                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a>                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a>                        <span class="c1"># for non-compactified versions of the files</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a>                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>                    <span class="n">content</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a>                    <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">content</span><span class="p">)</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a>                    <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>                        <span class="n">start_read</span> <span class="o">=</span> <span class="n">content</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">+</span> <span class="mi">5</span> <span class="o">+</span> <span class="n">b2b</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>                        <span class="n">end_match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\n\s*\n&#39;</span><span class="p">,</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():])</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>                        <span class="n">T</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():]</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">end_match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">-</span> <span class="mi">4</span> <span class="o">-</span> <span class="n">b2b</span>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a>                        <span class="k">assert</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="mi">0</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="n">T</span><span class="p">,</span> <span class="s1">&#39;entries, starting to read in line&#39;</span><span class="p">,</span> <span class="n">start_read</span><span class="p">)</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a>                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator with pattern</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">pattern</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">not found.&#39;</span><span class="p">)</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a>                <span class="c1"># we found where the correlator</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a>                <span class="c1"># that is to be read is in the files</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a>                <span class="c1"># after preparing the datastructure</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a>                <span class="c1"># the correlators get parsed into...</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a>                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a>                <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">))</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a>            <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a>                <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">):</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a>                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a>                        <span class="n">lines</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a>                        <span class="c1"># check, if the correlator is in fact</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a>                        <span class="c1"># printed completely</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a>                        <span class="k">if</span><span class="p">(</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">lines</span><span class="p">)):</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a>                            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;EOF before end of correlator data! Maybe &quot;</span> <span class="o">+</span> <span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; is corrupted?&quot;</span><span class="p">)</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a>                        <span class="c1"># and start to read the correlator.</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a>                        <span class="c1"># the range here is chosen like this,</span>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a>                        <span class="c1"># since this allows for implementing</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a>                        <span class="c1"># a security check for every read correlator later...</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a>                        <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">start_read</span> <span class="o">-</span> <span class="mi">6</span><span class="p">,</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a>                            <span class="k">if</span> <span class="n">k</span> <span class="o">==</span> <span class="n">start_read</span> <span class="o">-</span> <span class="mi">5</span> <span class="o">-</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a>                                <span class="k">if</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="o">!=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">:</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a>                                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Wrong format&#39;</span><span class="p">,</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a>                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a>                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a>                                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">:][</span><span class="n">im</span><span class="p">]</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a>                <span class="k">for</span> <span class="n">cnfg</span><span class="p">,</span> <span class="n">subitem</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">):</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a>                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">subitem</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a>                        <span class="c1"># since the non-compatified files</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a>                        <span class="c1"># are typically not so long,</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a>                        <span class="c1"># we can iterate over the whole file.</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a>                        <span class="c1"># here one can also implement the chekc from above.</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a>                        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">fp</span><span class="p">):</span>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a>                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a>                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a>                                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a>                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a>                                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a>                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="mi">1</span> <span class="o">+</span> <span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a>
+</span><span id="L-282"><a href="#L-282"><span class="linenos">282</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos">283</span></a>        <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-284"><a href="#L-284"><span class="linenos">284</span></a>            <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
+</span><span id="L-285"><a href="#L-285"><span class="linenos">285</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-286"><a href="#L-286"><span class="linenos">286</span></a>            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="L-287"><a href="#L-287"><span class="linenos">287</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos">288</span></a>                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos">289</span></a>                <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos">290</span></a>        <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos">291</span></a>        <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="L-292"><a href="#L-292"><span class="linenos">292</span></a>            <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
+</span><span id="L-293"><a href="#L-293"><span class="linenos">293</span></a>        <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos">294</span></a>            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-295"><a href="#L-295"><span class="linenos">295</span></a>            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos">296</span></a>                <span class="n">content</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos">297</span></a>                <span class="n">data_starts</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-298"><a href="#L-298"><span class="linenos">298</span></a>                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">content</span><span class="p">):</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos">299</span></a>                    <span class="k">if</span> <span class="s2">&quot;[run]&quot;</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
+</span><span id="L-300"><a href="#L-300"><span class="linenos">300</span></a>                        <span class="n">data_starts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">linenumber</span><span class="p">)</span>
+</span><span id="L-301"><a href="#L-301"><span class="linenos">301</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">data_starts</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">))]))</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos">302</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in file structure found, not all runs have the same output length&quot;</span><span class="p">)</span>
+</span><span id="L-303"><a href="#L-303"><span class="linenos">303</span></a>                <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[:</span><span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos">304</span></a>                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">):</span>
+</span><span id="L-305"><a href="#L-305"><span class="linenos">305</span></a>                    <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;gauge_name&quot;</span><span class="p">):</span>
+</span><span id="L-306"><a href="#L-306"><span class="linenos">306</span></a>                        <span class="n">gauge_line</span> <span class="o">=</span> <span class="n">linenumber</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos">307</span></a>                    <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;[correlator]&quot;</span><span class="p">):</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos">308</span></a>                        <span class="n">corr_line</span> <span class="o">=</span> <span class="n">linenumber</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos">309</span></a>                        <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos">310</span></a>                        <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
+</span><span id="L-311"><a href="#L-311"><span class="linenos">311</span></a>                            <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos">312</span></a>                        <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
+</span><span id="L-313"><a href="#L-313"><span class="linenos">313</span></a>                            <span class="n">start_read</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">7</span> <span class="o">+</span> <span class="n">b2b</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos">314</span></a>                            <span class="k">break</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos">315</span></a>                <span class="n">endline</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos">316</span></a>                <span class="k">while</span> <span class="ow">not</span> <span class="n">chunk</span><span class="p">[</span><span class="n">endline</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">:</span>
+</span><span id="L-317"><a href="#L-317"><span class="linenos">317</span></a>                    <span class="n">endline</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos">318</span></a>                <span class="n">T</span> <span class="o">=</span> <span class="n">endline</span> <span class="o">-</span> <span class="n">start_read</span>
+</span><span id="L-319"><a href="#L-319"><span class="linenos">319</span></a>                <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-320"><a href="#L-320"><span class="linenos">320</span></a>                    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-321"><a href="#L-321"><span class="linenos">321</span></a>                    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-322"><a href="#L-322"><span class="linenos">322</span></a>                        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos">323</span></a>                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-324"><a href="#L-324"><span class="linenos">324</span></a>                    <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)))</span>
+</span><span id="L-325"><a href="#L-325"><span class="linenos">325</span></a>                <span class="c1"># all other chunks should follow the same structure</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos">326</span></a>                <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)):</span>
+</span><span id="L-327"><a href="#L-327"><span class="linenos">327</span></a>                    <span class="n">start</span> <span class="o">=</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">cnfg</span><span class="p">]</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos">328</span></a>                    <span class="n">stop</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos">329</span></a>                    <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">start</span><span class="p">:</span><span class="n">stop</span><span class="p">]</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos">330</span></a>                    <span class="k">try</span><span class="p">:</span>
+</span><span id="L-331"><a href="#L-331"><span class="linenos">331</span></a>                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-332"><a href="#L-332"><span class="linenos">332</span></a>                    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos">333</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directory, problem with chunk around line &quot;</span><span class="p">,</span> <span class="n">gauge_line</span><span class="p">)</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos">334</span></a>
+</span><span id="L-335"><a href="#L-335"><span class="linenos">335</span></a>                    <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+</span><span id="L-336"><a href="#L-336"><span class="linenos">336</span></a>                    <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos">337</span></a>                        <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos">338</span></a>                    <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
+</span><span id="L-339"><a href="#L-339"><span class="linenos">339</span></a>                        <span class="k">for</span> <span class="n">t</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">start_read</span><span class="p">:</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">]):</span>
+</span><span id="L-340"><a href="#L-340"><span class="linenos">340</span></a>                            <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos">341</span></a>                            <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">rep</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
+</span><span id="L-342"><a href="#L-342"><span class="linenos">342</span></a>            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
+</span><span id="L-343"><a href="#L-343"><span class="linenos">343</span></a>
+</span><span id="L-344"><a href="#L-344"><span class="linenos">344</span></a>    <span class="k">if</span> <span class="s2">&quot;check_configs&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos">345</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Checking for missing configs...&quot;</span><span class="p">)</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos">346</span></a>        <span class="n">che</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;check_configs&quot;</span><span class="p">)</span>
+</span><span id="L-347"><a href="#L-347"><span class="linenos">347</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">che</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
+</span><span id="L-348"><a href="#L-348"><span class="linenos">348</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;check_configs has to be the same length as replica!&quot;</span><span class="p">)</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos">349</span></a>        <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos">350</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;checking &quot;</span> <span class="o">+</span> <span class="n">new_names</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
+</span><span id="L-351"><a href="#L-351"><span class="linenos">351</span></a>            <span class="n">utils</span><span class="o">.</span><span class="n">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">[</span><span class="n">r</span><span class="p">],</span> <span class="n">che</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
+</span><span id="L-352"><a href="#L-352"><span class="linenos">352</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Done&quot;</span><span class="p">)</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos">353</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-354"><a href="#L-354"><span class="linenos">354</span></a>    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos">355</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">new_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
+</span><span id="L-356"><a href="#L-356"><span class="linenos">356</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -453,356 +453,356 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="n">cfg_separator</span><span class="o">=</span><span class="s2">&quot;n&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Read sfcf c format from given folder structure.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    quarks: str</span>
-<span class="sd">        Label of the quarks used in the sfcf input file. e.g. &quot;quark quark&quot;</span>
-<span class="sd">        for version 0.0 this does NOT need to be given with the typical &quot; - &quot;</span>
-<span class="sd">        that is present in the output file,</span>
-<span class="sd">        this is done automatically for this version</span>
-<span class="sd">    noffset: int</span>
-<span class="sd">        Offset of the source (only relevant when wavefunctions are used)</span>
-<span class="sd">    wf: int</span>
-<span class="sd">        ID of wave function</span>
-<span class="sd">    wf2: int</span>
-<span class="sd">        ID of the second wavefunction</span>
-<span class="sd">        (only relevant for boundary-to-boundary correlation functions)</span>
-<span class="sd">    im: bool</span>
-<span class="sd">        if True, read imaginary instead of real part</span>
-<span class="sd">        of the correlation function.</span>
-<span class="sd">    corr_type : str</span>
-<span class="sd">        change between bi (boundary - inner) (default) bib (boundary - inner - boundary) and bb (boundary - boundary)</span>
-<span class="sd">        correlator types</span>
-<span class="sd">    names : list</span>
-<span class="sd">        Alternative labeling for replicas/ensembles.</span>
-<span class="sd">        Has to have the appropriate length</span>
-<span class="sd">    ens_name : str</span>
-<span class="sd">        replaces the name of the ensemble</span>
-<span class="sd">    version: str</span>
-<span class="sd">        version of SFCF, with which the measurement was done.</span>
-<span class="sd">        if the compact output option (-c) was specified,</span>
-<span class="sd">        append a &quot;c&quot; to the version (e.g. &quot;1.0c&quot;)</span>
-<span class="sd">        if the append output option (-a) was specified,</span>
-<span class="sd">        append an &quot;a&quot; to the version</span>
-<span class="sd">    cfg_separator : str</span>
-<span class="sd">        String that separates the ensemble identifier from the configuration number (default &#39;n&#39;).</span>
-<span class="sd">    replica: list</span>
-<span class="sd">        list of replica to be read, default is all</span>
-<span class="sd">    files: list</span>
-<span class="sd">        list of files to be read per replica, default is all.</span>
-<span class="sd">        for non-compact output format, hand the folders to be read here.</span>
-<span class="sd">    check_configs:</span>
-<span class="sd">        list of list of supposed configs, eg. [range(1,1000)]</span>
-<span class="sd">        for one replicum with 1000 configs</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;im&#39;</span><span class="p">):</span>
-        <span class="n">im</span> <span class="o">=</span> <span class="mi">1</span>
-        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;imaginary&#39;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">im</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;real&#39;</span>
-    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">reps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;replica&quot;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bb&#39;</span><span class="p">:</span>
-        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">single</span> <span class="o">=</span> <span class="kc">True</span>
-    <span class="k">elif</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bib&#39;</span><span class="p">:</span>
-        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
-    <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;0.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0a&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0a&quot;</span><span class="p">]</span>
-
-    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version is not known!&quot;</span><span class="p">)</span>
-    <span class="k">if</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;c&quot;</span><span class="p">):</span>
-        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="k">elif</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;a&quot;</span><span class="p">):</span>
-        <span class="n">appended</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
-    <span class="n">read</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">T</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">start</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">ls</span> <span class="o">=</span> <span class="n">reps</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-            <span class="k">break</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
-        <span class="c1"># Exclude folders with different names</span>
-        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
-                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="c1"># New version, to cope with ids, etc.</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
-        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">])</span> <span class="o">//</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">]))</span>
-    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read&#39;</span><span class="p">,</span> <span class="n">part</span><span class="p">,</span> <span class="s1">&#39;part of&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span>
-          <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">new_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;names are not unique!&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Names does not have the required length&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">new_names</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">idx</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
-
-                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-        <span class="k">else</span><span class="p">:</span>
-
-            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
-                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="n">myentry</span> <span class="o">=</span> <span class="n">entry</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="n">idx</span> <span class="o">=</span> <span class="n">myentry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
-
-                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">myentry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
-    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
-            <span class="n">sub_ls</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">sub_ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
-                <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
-                    <span class="k">break</span>
-                <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
-                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
-                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
-                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s1">&#39;cfg*&#39;</span><span class="p">):</span>
-                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
-            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">no_cfg</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
-                <span class="k">try</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
-                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directroy, problem with file &quot;</span> <span class="o">+</span> <span class="n">cfg</span><span class="p">)</span>
-            <span class="n">rep_idl</span><span class="o">.</span><span class="n">sort</span><span class="p">()</span>
-            <span class="c1"># maybe there is a better way to print the idls</span>
-            <span class="nb">print</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="s1">&#39;:&#39;</span><span class="p">,</span> <span class="n">no_cfg</span><span class="p">,</span> <span class="s1">&#39; configurations&#39;</span><span class="p">)</span>
-            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
-            <span class="c1"># here we have found all the files we need to look into.</span>
-            <span class="k">if</span> <span class="n">i</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="c1"># here, we want to find the place within the file,</span>
-                <span class="c1"># where the correlator we need is stored.</span>
-                <span class="c1"># to do so, the pattern needed is put together</span>
-                <span class="c1"># from the input values</span>
-                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
-                    <span class="n">pattern</span> <span class="o">=</span> <span class="s2">&quot;# &quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot; : offset &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;, wf &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
-                    <span class="c1"># if b2b, a second wf is needed</span>
-                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
-                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot;, wf_2 &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
-                    <span class="n">qs</span> <span class="o">=</span> <span class="n">quarks</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
-                    <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot; : &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; - &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                    <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">file</span><span class="p">):</span>
-                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;</span> <span class="n">start</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span>
-                            <span class="k">break</span>
-                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start</span><span class="p">:</span>
-                            <span class="n">T</span> <span class="o">+=</span> <span class="mi">1</span>
-                        <span class="k">if</span> <span class="n">pattern</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                            <span class="n">read</span> <span class="o">=</span> <span class="mi">1</span>
-                            <span class="n">start</span> <span class="o">=</span> <span class="n">k</span> <span class="o">+</span> <span class="mi">1</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; entries found.&quot;</span><span class="p">)</span>
-                    <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
-                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
-                    <span class="c1"># and the file is parsed through to find the pattern</span>
-                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="c1"># for non-compactified versions of the files</span>
-                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
-
-                    <span class="n">content</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
-                    <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">content</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
-                        <span class="n">start_read</span> <span class="o">=</span> <span class="n">content</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">+</span> <span class="mi">5</span> <span class="o">+</span> <span class="n">b2b</span>
-                        <span class="n">end_match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\n\s*\n&#39;</span><span class="p">,</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():])</span>
-                        <span class="n">T</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():]</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">end_match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">-</span> <span class="mi">4</span> <span class="o">-</span> <span class="n">b2b</span>
-                        <span class="k">assert</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="mi">0</span>
-                        <span class="nb">print</span><span class="p">(</span><span class="n">T</span><span class="p">,</span> <span class="s1">&#39;entries, starting to read in line&#39;</span><span class="p">,</span> <span class="n">start_read</span><span class="p">)</span>
-                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator with pattern</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">pattern</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">not found.&#39;</span><span class="p">)</span>
-
-                <span class="c1"># we found where the correlator</span>
-                <span class="c1"># that is to be read is in the files</span>
-                <span class="c1"># after preparing the datastructure</span>
-                <span class="c1"># the correlators get parsed into...</span>
-                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-
-            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">):</span>
-                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-                        <span class="n">lines</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-                        <span class="c1"># check, if the correlator is in fact</span>
-                        <span class="c1"># printed completely</span>
-                        <span class="k">if</span><span class="p">(</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">lines</span><span class="p">)):</span>
-                            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;EOF before end of correlator data! Maybe &quot;</span> <span class="o">+</span> <span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; is corrupted?&quot;</span><span class="p">)</span>
-                        <span class="c1"># and start to read the correlator.</span>
-                        <span class="c1"># the range here is chosen like this,</span>
-                        <span class="c1"># since this allows for implementing</span>
-                        <span class="c1"># a security check for every read correlator later...</span>
-                        <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">start_read</span> <span class="o">-</span> <span class="mi">6</span><span class="p">,</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
-                            <span class="k">if</span> <span class="n">k</span> <span class="o">==</span> <span class="n">start_read</span> <span class="o">-</span> <span class="mi">5</span> <span class="o">-</span> <span class="n">b2b</span><span class="p">:</span>
-                                <span class="k">if</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="o">!=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">:</span>
-                                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Wrong format&#39;</span><span class="p">,</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span>
-                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
-                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
-                                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">:][</span><span class="n">im</span><span class="p">]</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">cnfg</span><span class="p">,</span> <span class="n">subitem</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">):</span>
-                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">subitem</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-                        <span class="c1"># since the non-compatified files</span>
-                        <span class="c1"># are typically not so long,</span>
-                        <span class="c1"># we can iterate over the whole file.</span>
-                        <span class="c1"># here one can also implement the chekc from above.</span>
-                        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">fp</span><span class="p">):</span>
-                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
-                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
-                                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
-                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
-                                <span class="k">else</span><span class="p">:</span>
-                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="mi">1</span> <span class="o">+</span> <span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
-
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
-                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
-                <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-        <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
-            <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
-            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
-                <span class="n">content</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
-                <span class="n">data_starts</span> <span class="o">=</span> <span class="p">[]</span>
-                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">content</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="s2">&quot;[run]&quot;</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
-                        <span class="n">data_starts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">linenumber</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">data_starts</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">))]))</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in file structure found, not all runs have the same output length&quot;</span><span class="p">)</span>
-                <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[:</span><span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span>
-                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;gauge_name&quot;</span><span class="p">):</span>
-                        <span class="n">gauge_line</span> <span class="o">=</span> <span class="n">linenumber</span>
-                    <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;[correlator]&quot;</span><span class="p">):</span>
-                        <span class="n">corr_line</span> <span class="o">=</span> <span class="n">linenumber</span>
-                        <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
-                        <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
-                            <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
-                        <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
-                            <span class="n">start_read</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">7</span> <span class="o">+</span> <span class="n">b2b</span>
-                            <span class="k">break</span>
-                <span class="n">endline</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span>
-                <span class="k">while</span> <span class="ow">not</span> <span class="n">chunk</span><span class="p">[</span><span class="n">endline</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">:</span>
-                    <span class="n">endline</span> <span class="o">+=</span> <span class="mi">1</span>
-                <span class="n">T</span> <span class="o">=</span> <span class="n">endline</span> <span class="o">-</span> <span class="n">start_read</span>
-                <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
-                    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
-                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-                    <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)))</span>
-                <span class="c1"># all other chunks should follow the same structure</span>
-                <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)):</span>
-                    <span class="n">start</span> <span class="o">=</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">cnfg</span><span class="p">]</span>
-                    <span class="n">stop</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-                    <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">start</span><span class="p">:</span><span class="n">stop</span><span class="p">]</span>
-                    <span class="k">try</span><span class="p">:</span>
-                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directory, problem with chunk around line &quot;</span><span class="p">,</span> <span class="n">gauge_line</span><span class="p">)</span>
-
-                    <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
-                    <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
-                        <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
-                    <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
-                        <span class="k">for</span> <span class="n">t</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">start_read</span><span class="p">:</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">]):</span>
-                            <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
-                            <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">rep</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
-            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="s2">&quot;check_configs&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Checking for missing configs...&quot;</span><span class="p">)</span>
-        <span class="n">che</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;check_configs&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">che</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;check_configs has to be the same length as replica!&quot;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;checking &quot;</span> <span class="o">+</span> <span class="n">new_names</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
-            <span class="n">utils</span><span class="o">.</span><span class="n">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">[</span><span class="n">r</span><span class="p">],</span> <span class="n">che</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
-        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Done&quot;</span><span class="p">)</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">new_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="read_sfcf-9"><a href="#read_sfcf-9"><span class="linenos">  9</span></a><span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="n">cfg_separator</span><span class="o">=</span><span class="s2">&quot;n&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="read_sfcf-10"><a href="#read_sfcf-10"><span class="linenos"> 10</span></a>    <span class="sd">&quot;&quot;&quot;Read sfcf c format from given folder structure.</span>
+</span><span id="read_sfcf-11"><a href="#read_sfcf-11"><span class="linenos"> 11</span></a>
+</span><span id="read_sfcf-12"><a href="#read_sfcf-12"><span class="linenos"> 12</span></a><span class="sd">    Parameters</span>
+</span><span id="read_sfcf-13"><a href="#read_sfcf-13"><span class="linenos"> 13</span></a><span class="sd">    ----------</span>
+</span><span id="read_sfcf-14"><a href="#read_sfcf-14"><span class="linenos"> 14</span></a><span class="sd">    quarks: str</span>
+</span><span id="read_sfcf-15"><a href="#read_sfcf-15"><span class="linenos"> 15</span></a><span class="sd">        Label of the quarks used in the sfcf input file. e.g. &quot;quark quark&quot;</span>
+</span><span id="read_sfcf-16"><a href="#read_sfcf-16"><span class="linenos"> 16</span></a><span class="sd">        for version 0.0 this does NOT need to be given with the typical &quot; - &quot;</span>
+</span><span id="read_sfcf-17"><a href="#read_sfcf-17"><span class="linenos"> 17</span></a><span class="sd">        that is present in the output file,</span>
+</span><span id="read_sfcf-18"><a href="#read_sfcf-18"><span class="linenos"> 18</span></a><span class="sd">        this is done automatically for this version</span>
+</span><span id="read_sfcf-19"><a href="#read_sfcf-19"><span class="linenos"> 19</span></a><span class="sd">    noffset: int</span>
+</span><span id="read_sfcf-20"><a href="#read_sfcf-20"><span class="linenos"> 20</span></a><span class="sd">        Offset of the source (only relevant when wavefunctions are used)</span>
+</span><span id="read_sfcf-21"><a href="#read_sfcf-21"><span class="linenos"> 21</span></a><span class="sd">    wf: int</span>
+</span><span id="read_sfcf-22"><a href="#read_sfcf-22"><span class="linenos"> 22</span></a><span class="sd">        ID of wave function</span>
+</span><span id="read_sfcf-23"><a href="#read_sfcf-23"><span class="linenos"> 23</span></a><span class="sd">    wf2: int</span>
+</span><span id="read_sfcf-24"><a href="#read_sfcf-24"><span class="linenos"> 24</span></a><span class="sd">        ID of the second wavefunction</span>
+</span><span id="read_sfcf-25"><a href="#read_sfcf-25"><span class="linenos"> 25</span></a><span class="sd">        (only relevant for boundary-to-boundary correlation functions)</span>
+</span><span id="read_sfcf-26"><a href="#read_sfcf-26"><span class="linenos"> 26</span></a><span class="sd">    im: bool</span>
+</span><span id="read_sfcf-27"><a href="#read_sfcf-27"><span class="linenos"> 27</span></a><span class="sd">        if True, read imaginary instead of real part</span>
+</span><span id="read_sfcf-28"><a href="#read_sfcf-28"><span class="linenos"> 28</span></a><span class="sd">        of the correlation function.</span>
+</span><span id="read_sfcf-29"><a href="#read_sfcf-29"><span class="linenos"> 29</span></a><span class="sd">    corr_type : str</span>
+</span><span id="read_sfcf-30"><a href="#read_sfcf-30"><span class="linenos"> 30</span></a><span class="sd">        change between bi (boundary - inner) (default) bib (boundary - inner - boundary) and bb (boundary - boundary)</span>
+</span><span id="read_sfcf-31"><a href="#read_sfcf-31"><span class="linenos"> 31</span></a><span class="sd">        correlator types</span>
+</span><span id="read_sfcf-32"><a href="#read_sfcf-32"><span class="linenos"> 32</span></a><span class="sd">    names : list</span>
+</span><span id="read_sfcf-33"><a href="#read_sfcf-33"><span class="linenos"> 33</span></a><span class="sd">        Alternative labeling for replicas/ensembles.</span>
+</span><span id="read_sfcf-34"><a href="#read_sfcf-34"><span class="linenos"> 34</span></a><span class="sd">        Has to have the appropriate length</span>
+</span><span id="read_sfcf-35"><a href="#read_sfcf-35"><span class="linenos"> 35</span></a><span class="sd">    ens_name : str</span>
+</span><span id="read_sfcf-36"><a href="#read_sfcf-36"><span class="linenos"> 36</span></a><span class="sd">        replaces the name of the ensemble</span>
+</span><span id="read_sfcf-37"><a href="#read_sfcf-37"><span class="linenos"> 37</span></a><span class="sd">    version: str</span>
+</span><span id="read_sfcf-38"><a href="#read_sfcf-38"><span class="linenos"> 38</span></a><span class="sd">        version of SFCF, with which the measurement was done.</span>
+</span><span id="read_sfcf-39"><a href="#read_sfcf-39"><span class="linenos"> 39</span></a><span class="sd">        if the compact output option (-c) was specified,</span>
+</span><span id="read_sfcf-40"><a href="#read_sfcf-40"><span class="linenos"> 40</span></a><span class="sd">        append a &quot;c&quot; to the version (e.g. &quot;1.0c&quot;)</span>
+</span><span id="read_sfcf-41"><a href="#read_sfcf-41"><span class="linenos"> 41</span></a><span class="sd">        if the append output option (-a) was specified,</span>
+</span><span id="read_sfcf-42"><a href="#read_sfcf-42"><span class="linenos"> 42</span></a><span class="sd">        append an &quot;a&quot; to the version</span>
+</span><span id="read_sfcf-43"><a href="#read_sfcf-43"><span class="linenos"> 43</span></a><span class="sd">    cfg_separator : str</span>
+</span><span id="read_sfcf-44"><a href="#read_sfcf-44"><span class="linenos"> 44</span></a><span class="sd">        String that separates the ensemble identifier from the configuration number (default &#39;n&#39;).</span>
+</span><span id="read_sfcf-45"><a href="#read_sfcf-45"><span class="linenos"> 45</span></a><span class="sd">    replica: list</span>
+</span><span id="read_sfcf-46"><a href="#read_sfcf-46"><span class="linenos"> 46</span></a><span class="sd">        list of replica to be read, default is all</span>
+</span><span id="read_sfcf-47"><a href="#read_sfcf-47"><span class="linenos"> 47</span></a><span class="sd">    files: list</span>
+</span><span id="read_sfcf-48"><a href="#read_sfcf-48"><span class="linenos"> 48</span></a><span class="sd">        list of files to be read per replica, default is all.</span>
+</span><span id="read_sfcf-49"><a href="#read_sfcf-49"><span class="linenos"> 49</span></a><span class="sd">        for non-compact output format, hand the folders to be read here.</span>
+</span><span id="read_sfcf-50"><a href="#read_sfcf-50"><span class="linenos"> 50</span></a><span class="sd">    check_configs:</span>
+</span><span id="read_sfcf-51"><a href="#read_sfcf-51"><span class="linenos"> 51</span></a><span class="sd">        list of list of supposed configs, eg. [range(1,1000)]</span>
+</span><span id="read_sfcf-52"><a href="#read_sfcf-52"><span class="linenos"> 52</span></a><span class="sd">        for one replicum with 1000 configs</span>
+</span><span id="read_sfcf-53"><a href="#read_sfcf-53"><span class="linenos"> 53</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="read_sfcf-54"><a href="#read_sfcf-54"><span class="linenos"> 54</span></a>    <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;im&#39;</span><span class="p">):</span>
+</span><span id="read_sfcf-55"><a href="#read_sfcf-55"><span class="linenos"> 55</span></a>        <span class="n">im</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_sfcf-56"><a href="#read_sfcf-56"><span class="linenos"> 56</span></a>        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;imaginary&#39;</span>
+</span><span id="read_sfcf-57"><a href="#read_sfcf-57"><span class="linenos"> 57</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-58"><a href="#read_sfcf-58"><span class="linenos"> 58</span></a>        <span class="n">im</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_sfcf-59"><a href="#read_sfcf-59"><span class="linenos"> 59</span></a>        <span class="n">part</span> <span class="o">=</span> <span class="s1">&#39;real&#39;</span>
+</span><span id="read_sfcf-60"><a href="#read_sfcf-60"><span class="linenos"> 60</span></a>    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-61"><a href="#read_sfcf-61"><span class="linenos"> 61</span></a>        <span class="n">reps</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;replica&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-62"><a href="#read_sfcf-62"><span class="linenos"> 62</span></a>    <span class="k">if</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bb&#39;</span><span class="p">:</span>
+</span><span id="read_sfcf-63"><a href="#read_sfcf-63"><span class="linenos"> 63</span></a>        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="read_sfcf-64"><a href="#read_sfcf-64"><span class="linenos"> 64</span></a>        <span class="n">single</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="read_sfcf-65"><a href="#read_sfcf-65"><span class="linenos"> 65</span></a>    <span class="k">elif</span> <span class="n">corr_type</span> <span class="o">==</span> <span class="s1">&#39;bib&#39;</span><span class="p">:</span>
+</span><span id="read_sfcf-66"><a href="#read_sfcf-66"><span class="linenos"> 66</span></a>        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="read_sfcf-67"><a href="#read_sfcf-67"><span class="linenos"> 67</span></a>        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-68"><a href="#read_sfcf-68"><span class="linenos"> 68</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-69"><a href="#read_sfcf-69"><span class="linenos"> 69</span></a>        <span class="n">b2b</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-70"><a href="#read_sfcf-70"><span class="linenos"> 70</span></a>        <span class="n">single</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-71"><a href="#read_sfcf-71"><span class="linenos"> 71</span></a>    <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="read_sfcf-72"><a href="#read_sfcf-72"><span class="linenos"> 72</span></a>    <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-73"><a href="#read_sfcf-73"><span class="linenos"> 73</span></a>    <span class="n">known_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;0.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0c&quot;</span><span class="p">,</span> <span class="s2">&quot;1.0a&quot;</span><span class="p">,</span> <span class="s2">&quot;2.0a&quot;</span><span class="p">]</span>
+</span><span id="read_sfcf-74"><a href="#read_sfcf-74"><span class="linenos"> 74</span></a>
+</span><span id="read_sfcf-75"><a href="#read_sfcf-75"><span class="linenos"> 75</span></a>    <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_versions</span><span class="p">:</span>
+</span><span id="read_sfcf-76"><a href="#read_sfcf-76"><span class="linenos"> 76</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;This version is not known!&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-77"><a href="#read_sfcf-77"><span class="linenos"> 77</span></a>    <span class="k">if</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;c&quot;</span><span class="p">):</span>
+</span><span id="read_sfcf-78"><a href="#read_sfcf-78"><span class="linenos"> 78</span></a>        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-79"><a href="#read_sfcf-79"><span class="linenos"> 79</span></a>        <span class="n">compact</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="read_sfcf-80"><a href="#read_sfcf-80"><span class="linenos"> 80</span></a>        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="read_sfcf-81"><a href="#read_sfcf-81"><span class="linenos"> 81</span></a>    <span class="k">elif</span><span class="p">(</span><span class="n">version</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;a&quot;</span><span class="p">):</span>
+</span><span id="read_sfcf-82"><a href="#read_sfcf-82"><span class="linenos"> 82</span></a>        <span class="n">appended</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="read_sfcf-83"><a href="#read_sfcf-83"><span class="linenos"> 83</span></a>        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-84"><a href="#read_sfcf-84"><span class="linenos"> 84</span></a>        <span class="n">version</span> <span class="o">=</span> <span class="n">version</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="read_sfcf-85"><a href="#read_sfcf-85"><span class="linenos"> 85</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-86"><a href="#read_sfcf-86"><span class="linenos"> 86</span></a>        <span class="n">compact</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-87"><a href="#read_sfcf-87"><span class="linenos"> 87</span></a>        <span class="n">appended</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="read_sfcf-88"><a href="#read_sfcf-88"><span class="linenos"> 88</span></a>    <span class="n">read</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_sfcf-89"><a href="#read_sfcf-89"><span class="linenos"> 89</span></a>    <span class="n">T</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_sfcf-90"><a href="#read_sfcf-90"><span class="linenos"> 90</span></a>    <span class="n">start</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="read_sfcf-91"><a href="#read_sfcf-91"><span class="linenos"> 91</span></a>    <span class="n">ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-92"><a href="#read_sfcf-92"><span class="linenos"> 92</span></a>    <span class="k">if</span> <span class="s2">&quot;replica&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-93"><a href="#read_sfcf-93"><span class="linenos"> 93</span></a>        <span class="n">ls</span> <span class="o">=</span> <span class="n">reps</span>
+</span><span id="read_sfcf-94"><a href="#read_sfcf-94"><span class="linenos"> 94</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-95"><a href="#read_sfcf-95"><span class="linenos"> 95</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="read_sfcf-96"><a href="#read_sfcf-96"><span class="linenos"> 96</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="read_sfcf-97"><a href="#read_sfcf-97"><span class="linenos"> 97</span></a>                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
+</span><span id="read_sfcf-98"><a href="#read_sfcf-98"><span class="linenos"> 98</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-99"><a href="#read_sfcf-99"><span class="linenos"> 99</span></a>                <span class="n">ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="read_sfcf-100"><a href="#read_sfcf-100"><span class="linenos">100</span></a>            <span class="k">break</span>
+</span><span id="read_sfcf-101"><a href="#read_sfcf-101"><span class="linenos">101</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_sfcf-102"><a href="#read_sfcf-102"><span class="linenos">102</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error, directory not found&#39;</span><span class="p">)</span>
+</span><span id="read_sfcf-103"><a href="#read_sfcf-103"><span class="linenos">103</span></a>        <span class="c1"># Exclude folders with different names</span>
+</span><span id="read_sfcf-104"><a href="#read_sfcf-104"><span class="linenos">104</span></a>        <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_sfcf-105"><a href="#read_sfcf-105"><span class="linenos">105</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
+</span><span id="read_sfcf-106"><a href="#read_sfcf-106"><span class="linenos">106</span></a>                <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="read_sfcf-107"><a href="#read_sfcf-107"><span class="linenos">107</span></a>
+</span><span id="read_sfcf-108"><a href="#read_sfcf-108"><span class="linenos">108</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="read_sfcf-109"><a href="#read_sfcf-109"><span class="linenos">109</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_sfcf-110"><a href="#read_sfcf-110"><span class="linenos">110</span></a>            <span class="c1"># New version, to cope with ids, etc.</span>
+</span><span id="read_sfcf-111"><a href="#read_sfcf-111"><span class="linenos">111</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">prefix</span><span class="p">):])[</span><span class="mi">0</span><span class="p">]))</span>
+</span><span id="read_sfcf-112"><a href="#read_sfcf-112"><span class="linenos">112</span></a>        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span>
+</span><span id="read_sfcf-113"><a href="#read_sfcf-113"><span class="linenos">113</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-114"><a href="#read_sfcf-114"><span class="linenos">114</span></a>        <span class="n">replica</span> <span class="o">=</span> <span class="nb">len</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">])</span> <span class="o">//</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">file</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;.&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">]))</span>
+</span><span id="read_sfcf-115"><a href="#read_sfcf-115"><span class="linenos">115</span></a>    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Read&#39;</span><span class="p">,</span> <span class="n">part</span><span class="p">,</span> <span class="s1">&#39;part of&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;from&#39;</span><span class="p">,</span> <span class="n">prefix</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span>
+</span><span id="read_sfcf-116"><a href="#read_sfcf-116"><span class="linenos">116</span></a>          <span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">,</span> <span class="s1">&#39;replica&#39;</span><span class="p">)</span>
+</span><span id="read_sfcf-117"><a href="#read_sfcf-117"><span class="linenos">117</span></a>    <span class="k">if</span> <span class="s1">&#39;names&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-118"><a href="#read_sfcf-118"><span class="linenos">118</span></a>        <span class="n">new_names</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;names&#39;</span><span class="p">)</span>
+</span><span id="read_sfcf-119"><a href="#read_sfcf-119"><span class="linenos">119</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)):</span>
+</span><span id="read_sfcf-120"><a href="#read_sfcf-120"><span class="linenos">120</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;names are not unique!&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-121"><a href="#read_sfcf-121"><span class="linenos">121</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">!=</span> <span class="n">replica</span><span class="p">:</span>
+</span><span id="read_sfcf-122"><a href="#read_sfcf-122"><span class="linenos">122</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Names does not have the required length&#39;</span><span class="p">,</span> <span class="n">replica</span><span class="p">)</span>
+</span><span id="read_sfcf-123"><a href="#read_sfcf-123"><span class="linenos">123</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-124"><a href="#read_sfcf-124"><span class="linenos">124</span></a>        <span class="n">new_names</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-125"><a href="#read_sfcf-125"><span class="linenos">125</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="read_sfcf-126"><a href="#read_sfcf-126"><span class="linenos">126</span></a>            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_sfcf-127"><a href="#read_sfcf-127"><span class="linenos">127</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="read_sfcf-128"><a href="#read_sfcf-128"><span class="linenos">128</span></a>                    <span class="n">idx</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="read_sfcf-129"><a href="#read_sfcf-129"><span class="linenos">129</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="read_sfcf-130"><a href="#read_sfcf-130"><span class="linenos">130</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-131"><a href="#read_sfcf-131"><span class="linenos">131</span></a>
+</span><span id="read_sfcf-132"><a href="#read_sfcf-132"><span class="linenos">132</span></a>                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-133"><a href="#read_sfcf-133"><span class="linenos">133</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="read_sfcf-134"><a href="#read_sfcf-134"><span class="linenos">134</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-135"><a href="#read_sfcf-135"><span class="linenos">135</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">entry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="read_sfcf-136"><a href="#read_sfcf-136"><span class="linenos">136</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-137"><a href="#read_sfcf-137"><span class="linenos">137</span></a>
+</span><span id="read_sfcf-138"><a href="#read_sfcf-138"><span class="linenos">138</span></a>            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_sfcf-139"><a href="#read_sfcf-139"><span class="linenos">139</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
+</span><span id="read_sfcf-140"><a href="#read_sfcf-140"><span class="linenos">140</span></a>                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="read_sfcf-141"><a href="#read_sfcf-141"><span class="linenos">141</span></a>            <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="read_sfcf-142"><a href="#read_sfcf-142"><span class="linenos">142</span></a>            <span class="k">for</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_sfcf-143"><a href="#read_sfcf-143"><span class="linenos">143</span></a>                <span class="n">myentry</span> <span class="o">=</span> <span class="n">entry</span><span class="p">[:</span><span class="o">-</span><span class="nb">len</span><span class="p">(</span><span class="n">name</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+</span><span id="read_sfcf-144"><a href="#read_sfcf-144"><span class="linenos">144</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="read_sfcf-145"><a href="#read_sfcf-145"><span class="linenos">145</span></a>                    <span class="n">idx</span> <span class="o">=</span> <span class="n">myentry</span><span class="o">.</span><span class="n">index</span><span class="p">(</span><span class="s1">&#39;r&#39;</span><span class="p">)</span>
+</span><span id="read_sfcf-146"><a href="#read_sfcf-146"><span class="linenos">146</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="read_sfcf-147"><a href="#read_sfcf-147"><span class="linenos">147</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Automatic recognition of replicum failed, please enter the key word &#39;names&#39;.&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-148"><a href="#read_sfcf-148"><span class="linenos">148</span></a>
+</span><span id="read_sfcf-149"><a href="#read_sfcf-149"><span class="linenos">149</span></a>                <span class="k">if</span> <span class="s1">&#39;ens_name&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-150"><a href="#read_sfcf-150"><span class="linenos">150</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;ens_name&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="read_sfcf-151"><a href="#read_sfcf-151"><span class="linenos">151</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-152"><a href="#read_sfcf-152"><span class="linenos">152</span></a>                    <span class="n">new_names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">myentry</span><span class="p">[:</span><span class="n">idx</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span> <span class="o">+</span> <span class="n">myentry</span><span class="p">[</span><span class="n">idx</span><span class="p">:])</span>
+</span><span id="read_sfcf-153"><a href="#read_sfcf-153"><span class="linenos">153</span></a>    <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-154"><a href="#read_sfcf-154"><span class="linenos">154</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">appended</span><span class="p">:</span>
+</span><span id="read_sfcf-155"><a href="#read_sfcf-155"><span class="linenos">155</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
+</span><span id="read_sfcf-156"><a href="#read_sfcf-156"><span class="linenos">156</span></a>            <span class="n">sub_ls</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-157"><a href="#read_sfcf-157"><span class="linenos">157</span></a>            <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-158"><a href="#read_sfcf-158"><span class="linenos">158</span></a>                <span class="n">sub_ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-159"><a href="#read_sfcf-159"><span class="linenos">159</span></a>                <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="read_sfcf-160"><a href="#read_sfcf-160"><span class="linenos">160</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-161"><a href="#read_sfcf-161"><span class="linenos">161</span></a>                <span class="k">for</span> <span class="p">(</span><span class="n">dirpath</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span><span class="p">)</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span><span class="p">):</span>
+</span><span id="read_sfcf-162"><a href="#read_sfcf-162"><span class="linenos">162</span></a>                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="read_sfcf-163"><a href="#read_sfcf-163"><span class="linenos">163</span></a>                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">filenames</span><span class="p">)</span>
+</span><span id="read_sfcf-164"><a href="#read_sfcf-164"><span class="linenos">164</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-165"><a href="#read_sfcf-165"><span class="linenos">165</span></a>                        <span class="n">sub_ls</span><span class="o">.</span><span class="n">extend</span><span class="p">(</span><span class="n">dirnames</span><span class="p">)</span>
+</span><span id="read_sfcf-166"><a href="#read_sfcf-166"><span class="linenos">166</span></a>                    <span class="k">break</span>
+</span><span id="read_sfcf-167"><a href="#read_sfcf-167"><span class="linenos">167</span></a>                <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="read_sfcf-168"><a href="#read_sfcf-168"><span class="linenos">168</span></a>                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
+</span><span id="read_sfcf-169"><a href="#read_sfcf-169"><span class="linenos">169</span></a>                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*&#39;</span><span class="p">):</span>
+</span><span id="read_sfcf-170"><a href="#read_sfcf-170"><span class="linenos">170</span></a>                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="read_sfcf-171"><a href="#read_sfcf-171"><span class="linenos">171</span></a>                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="read_sfcf-172"><a href="#read_sfcf-172"><span class="linenos">172</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-173"><a href="#read_sfcf-173"><span class="linenos">173</span></a>                    <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
+</span><span id="read_sfcf-174"><a href="#read_sfcf-174"><span class="linenos">174</span></a>                        <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="s1">&#39;cfg*&#39;</span><span class="p">):</span>
+</span><span id="read_sfcf-175"><a href="#read_sfcf-175"><span class="linenos">175</span></a>                            <span class="n">sub_ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="read_sfcf-176"><a href="#read_sfcf-176"><span class="linenos">176</span></a>                    <span class="n">sub_ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
+</span><span id="read_sfcf-177"><a href="#read_sfcf-177"><span class="linenos">177</span></a>            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-178"><a href="#read_sfcf-178"><span class="linenos">178</span></a>            <span class="n">no_cfg</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">)</span>
+</span><span id="read_sfcf-179"><a href="#read_sfcf-179"><span class="linenos">179</span></a>            <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
+</span><span id="read_sfcf-180"><a href="#read_sfcf-180"><span class="linenos">180</span></a>                <span class="k">try</span><span class="p">:</span>
+</span><span id="read_sfcf-181"><a href="#read_sfcf-181"><span class="linenos">181</span></a>                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="read_sfcf-182"><a href="#read_sfcf-182"><span class="linenos">182</span></a>                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="read_sfcf-183"><a href="#read_sfcf-183"><span class="linenos">183</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-184"><a href="#read_sfcf-184"><span class="linenos">184</span></a>                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
+</span><span id="read_sfcf-185"><a href="#read_sfcf-185"><span class="linenos">185</span></a>                <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="read_sfcf-186"><a href="#read_sfcf-186"><span class="linenos">186</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directroy, problem with file &quot;</span> <span class="o">+</span> <span class="n">cfg</span><span class="p">)</span>
+</span><span id="read_sfcf-187"><a href="#read_sfcf-187"><span class="linenos">187</span></a>            <span class="n">rep_idl</span><span class="o">.</span><span class="n">sort</span><span class="p">()</span>
+</span><span id="read_sfcf-188"><a href="#read_sfcf-188"><span class="linenos">188</span></a>            <span class="c1"># maybe there is a better way to print the idls</span>
+</span><span id="read_sfcf-189"><a href="#read_sfcf-189"><span class="linenos">189</span></a>            <span class="nb">print</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="s1">&#39;:&#39;</span><span class="p">,</span> <span class="n">no_cfg</span><span class="p">,</span> <span class="s1">&#39; configurations&#39;</span><span class="p">)</span>
+</span><span id="read_sfcf-190"><a href="#read_sfcf-190"><span class="linenos">190</span></a>            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
+</span><span id="read_sfcf-191"><a href="#read_sfcf-191"><span class="linenos">191</span></a>            <span class="c1"># here we have found all the files we need to look into.</span>
+</span><span id="read_sfcf-192"><a href="#read_sfcf-192"><span class="linenos">192</span></a>            <span class="k">if</span> <span class="n">i</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_sfcf-193"><a href="#read_sfcf-193"><span class="linenos">193</span></a>                <span class="c1"># here, we want to find the place within the file,</span>
+</span><span id="read_sfcf-194"><a href="#read_sfcf-194"><span class="linenos">194</span></a>                <span class="c1"># where the correlator we need is stored.</span>
+</span><span id="read_sfcf-195"><a href="#read_sfcf-195"><span class="linenos">195</span></a>                <span class="c1"># to do so, the pattern needed is put together</span>
+</span><span id="read_sfcf-196"><a href="#read_sfcf-196"><span class="linenos">196</span></a>                <span class="c1"># from the input values</span>
+</span><span id="read_sfcf-197"><a href="#read_sfcf-197"><span class="linenos">197</span></a>                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
+</span><span id="read_sfcf-198"><a href="#read_sfcf-198"><span class="linenos">198</span></a>                    <span class="n">pattern</span> <span class="o">=</span> <span class="s2">&quot;# &quot;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s2">&quot; : offset &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;, wf &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
+</span><span id="read_sfcf-199"><a href="#read_sfcf-199"><span class="linenos">199</span></a>                    <span class="c1"># if b2b, a second wf is needed</span>
+</span><span id="read_sfcf-200"><a href="#read_sfcf-200"><span class="linenos">200</span></a>                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="read_sfcf-201"><a href="#read_sfcf-201"><span class="linenos">201</span></a>                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot;, wf_2 &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
+</span><span id="read_sfcf-202"><a href="#read_sfcf-202"><span class="linenos">202</span></a>                    <span class="n">qs</span> <span class="o">=</span> <span class="n">quarks</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot; &quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-203"><a href="#read_sfcf-203"><span class="linenos">203</span></a>                    <span class="n">pattern</span> <span class="o">+=</span> <span class="s2">&quot; : &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; - &quot;</span> <span class="o">+</span> <span class="n">qs</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="read_sfcf-204"><a href="#read_sfcf-204"><span class="linenos">204</span></a>                    <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-205"><a href="#read_sfcf-205"><span class="linenos">205</span></a>                    <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">file</span><span class="p">):</span>
+</span><span id="read_sfcf-206"><a href="#read_sfcf-206"><span class="linenos">206</span></a>                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">line</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;</span> <span class="n">start</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_sfcf-207"><a href="#read_sfcf-207"><span class="linenos">207</span></a>                            <span class="k">break</span>
+</span><span id="read_sfcf-208"><a href="#read_sfcf-208"><span class="linenos">208</span></a>                        <span class="k">if</span> <span class="n">read</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start</span><span class="p">:</span>
+</span><span id="read_sfcf-209"><a href="#read_sfcf-209"><span class="linenos">209</span></a>                            <span class="n">T</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="read_sfcf-210"><a href="#read_sfcf-210"><span class="linenos">210</span></a>                        <span class="k">if</span> <span class="n">pattern</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
+</span><span id="read_sfcf-211"><a href="#read_sfcf-211"><span class="linenos">211</span></a>                            <span class="n">read</span> <span class="o">=</span> <span class="mi">1</span>
+</span><span id="read_sfcf-212"><a href="#read_sfcf-212"><span class="linenos">212</span></a>                            <span class="n">start</span> <span class="o">=</span> <span class="n">k</span> <span class="o">+</span> <span class="mi">1</span>
+</span><span id="read_sfcf-213"><a href="#read_sfcf-213"><span class="linenos">213</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">T</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; entries found.&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-214"><a href="#read_sfcf-214"><span class="linenos">214</span></a>                    <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="read_sfcf-215"><a href="#read_sfcf-215"><span class="linenos">215</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-216"><a href="#read_sfcf-216"><span class="linenos">216</span></a>                    <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
+</span><span id="read_sfcf-217"><a href="#read_sfcf-217"><span class="linenos">217</span></a>                    <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="read_sfcf-218"><a href="#read_sfcf-218"><span class="linenos">218</span></a>                        <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
+</span><span id="read_sfcf-219"><a href="#read_sfcf-219"><span class="linenos">219</span></a>                    <span class="c1"># and the file is parsed through to find the pattern</span>
+</span><span id="read_sfcf-220"><a href="#read_sfcf-220"><span class="linenos">220</span></a>                    <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="read_sfcf-221"><a href="#read_sfcf-221"><span class="linenos">221</span></a>                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-222"><a href="#read_sfcf-222"><span class="linenos">222</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-223"><a href="#read_sfcf-223"><span class="linenos">223</span></a>                        <span class="c1"># for non-compactified versions of the files</span>
+</span><span id="read_sfcf-224"><a href="#read_sfcf-224"><span class="linenos">224</span></a>                        <span class="n">file</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">,</span> <span class="s2">&quot;r&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-225"><a href="#read_sfcf-225"><span class="linenos">225</span></a>
+</span><span id="read_sfcf-226"><a href="#read_sfcf-226"><span class="linenos">226</span></a>                    <span class="n">content</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
+</span><span id="read_sfcf-227"><a href="#read_sfcf-227"><span class="linenos">227</span></a>                    <span class="n">match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">content</span><span class="p">)</span>
+</span><span id="read_sfcf-228"><a href="#read_sfcf-228"><span class="linenos">228</span></a>                    <span class="k">if</span> <span class="n">match</span><span class="p">:</span>
+</span><span id="read_sfcf-229"><a href="#read_sfcf-229"><span class="linenos">229</span></a>                        <span class="n">start_read</span> <span class="o">=</span> <span class="n">content</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">+</span> <span class="mi">5</span> <span class="o">+</span> <span class="n">b2b</span>
+</span><span id="read_sfcf-230"><a href="#read_sfcf-230"><span class="linenos">230</span></a>                        <span class="n">end_match</span> <span class="o">=</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\n\s*\n&#39;</span><span class="p">,</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():])</span>
+</span><span id="read_sfcf-231"><a href="#read_sfcf-231"><span class="linenos">231</span></a>                        <span class="n">T</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">match</span><span class="o">.</span><span class="n">start</span><span class="p">():]</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">end_match</span><span class="o">.</span><span class="n">start</span><span class="p">())</span> <span class="o">-</span> <span class="mi">4</span> <span class="o">-</span> <span class="n">b2b</span>
+</span><span id="read_sfcf-232"><a href="#read_sfcf-232"><span class="linenos">232</span></a>                        <span class="k">assert</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="mi">0</span>
+</span><span id="read_sfcf-233"><a href="#read_sfcf-233"><span class="linenos">233</span></a>                        <span class="nb">print</span><span class="p">(</span><span class="n">T</span><span class="p">,</span> <span class="s1">&#39;entries, starting to read in line&#39;</span><span class="p">,</span> <span class="n">start_read</span><span class="p">)</span>
+</span><span id="read_sfcf-234"><a href="#read_sfcf-234"><span class="linenos">234</span></a>                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="read_sfcf-235"><a href="#read_sfcf-235"><span class="linenos">235</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-236"><a href="#read_sfcf-236"><span class="linenos">236</span></a>                        <span class="n">file</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+</span><span id="read_sfcf-237"><a href="#read_sfcf-237"><span class="linenos">237</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Correlator with pattern</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="n">pattern</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">not found.&#39;</span><span class="p">)</span>
+</span><span id="read_sfcf-238"><a href="#read_sfcf-238"><span class="linenos">238</span></a>
+</span><span id="read_sfcf-239"><a href="#read_sfcf-239"><span class="linenos">239</span></a>                <span class="c1"># we found where the correlator</span>
+</span><span id="read_sfcf-240"><a href="#read_sfcf-240"><span class="linenos">240</span></a>                <span class="c1"># that is to be read is in the files</span>
+</span><span id="read_sfcf-241"><a href="#read_sfcf-241"><span class="linenos">241</span></a>                <span class="c1"># after preparing the datastructure</span>
+</span><span id="read_sfcf-242"><a href="#read_sfcf-242"><span class="linenos">242</span></a>                <span class="c1"># the correlators get parsed into...</span>
+</span><span id="read_sfcf-243"><a href="#read_sfcf-243"><span class="linenos">243</span></a>                <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-244"><a href="#read_sfcf-244"><span class="linenos">244</span></a>                <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-245"><a href="#read_sfcf-245"><span class="linenos">245</span></a>                    <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_sfcf-246"><a href="#read_sfcf-246"><span class="linenos">246</span></a>
+</span><span id="read_sfcf-247"><a href="#read_sfcf-247"><span class="linenos">247</span></a>            <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-248"><a href="#read_sfcf-248"><span class="linenos">248</span></a>                <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">))</span>
+</span><span id="read_sfcf-249"><a href="#read_sfcf-249"><span class="linenos">249</span></a>            <span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
+</span><span id="read_sfcf-250"><a href="#read_sfcf-250"><span class="linenos">250</span></a>                <span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">no_cfg</span><span class="p">):</span>
+</span><span id="read_sfcf-251"><a href="#read_sfcf-251"><span class="linenos">251</span></a>                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="read_sfcf-252"><a href="#read_sfcf-252"><span class="linenos">252</span></a>                        <span class="n">lines</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
+</span><span id="read_sfcf-253"><a href="#read_sfcf-253"><span class="linenos">253</span></a>                        <span class="c1"># check, if the correlator is in fact</span>
+</span><span id="read_sfcf-254"><a href="#read_sfcf-254"><span class="linenos">254</span></a>                        <span class="c1"># printed completely</span>
+</span><span id="read_sfcf-255"><a href="#read_sfcf-255"><span class="linenos">255</span></a>                        <span class="k">if</span><span class="p">(</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span> <span class="o">&gt;</span> <span class="nb">len</span><span class="p">(</span><span class="n">lines</span><span class="p">)):</span>
+</span><span id="read_sfcf-256"><a href="#read_sfcf-256"><span class="linenos">256</span></a>                            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;EOF before end of correlator data! Maybe &quot;</span> <span class="o">+</span> <span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">]</span> <span class="o">+</span> <span class="s2">&quot; is corrupted?&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-257"><a href="#read_sfcf-257"><span class="linenos">257</span></a>                        <span class="c1"># and start to read the correlator.</span>
+</span><span id="read_sfcf-258"><a href="#read_sfcf-258"><span class="linenos">258</span></a>                        <span class="c1"># the range here is chosen like this,</span>
+</span><span id="read_sfcf-259"><a href="#read_sfcf-259"><span class="linenos">259</span></a>                        <span class="c1"># since this allows for implementing</span>
+</span><span id="read_sfcf-260"><a href="#read_sfcf-260"><span class="linenos">260</span></a>                        <span class="c1"># a security check for every read correlator later...</span>
+</span><span id="read_sfcf-261"><a href="#read_sfcf-261"><span class="linenos">261</span></a>                        <span class="k">for</span> <span class="n">k</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">start_read</span> <span class="o">-</span> <span class="mi">6</span><span class="p">,</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-262"><a href="#read_sfcf-262"><span class="linenos">262</span></a>                            <span class="k">if</span> <span class="n">k</span> <span class="o">==</span> <span class="n">start_read</span> <span class="o">-</span> <span class="mi">5</span> <span class="o">-</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="read_sfcf-263"><a href="#read_sfcf-263"><span class="linenos">263</span></a>                                <span class="k">if</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="o">!=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">:</span>
+</span><span id="read_sfcf-264"><a href="#read_sfcf-264"><span class="linenos">264</span></a>                                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Wrong format&#39;</span><span class="p">,</span> <span class="n">sub_ls</span><span class="p">[</span><span class="n">cfg</span><span class="p">])</span>
+</span><span id="read_sfcf-265"><a href="#read_sfcf-265"><span class="linenos">265</span></a>                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-266"><a href="#read_sfcf-266"><span class="linenos">266</span></a>                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">lines</span><span class="p">[</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
+</span><span id="read_sfcf-267"><a href="#read_sfcf-267"><span class="linenos">267</span></a>                                <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">:][</span><span class="n">im</span><span class="p">]</span>
+</span><span id="read_sfcf-268"><a href="#read_sfcf-268"><span class="linenos">268</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-269"><a href="#read_sfcf-269"><span class="linenos">269</span></a>                <span class="k">for</span> <span class="n">cnfg</span><span class="p">,</span> <span class="n">subitem</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">sub_ls</span><span class="p">):</span>
+</span><span id="read_sfcf-270"><a href="#read_sfcf-270"><span class="linenos">270</span></a>                    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">item</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">subitem</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="read_sfcf-271"><a href="#read_sfcf-271"><span class="linenos">271</span></a>                        <span class="c1"># since the non-compatified files</span>
+</span><span id="read_sfcf-272"><a href="#read_sfcf-272"><span class="linenos">272</span></a>                        <span class="c1"># are typically not so long,</span>
+</span><span id="read_sfcf-273"><a href="#read_sfcf-273"><span class="linenos">273</span></a>                        <span class="c1"># we can iterate over the whole file.</span>
+</span><span id="read_sfcf-274"><a href="#read_sfcf-274"><span class="linenos">274</span></a>                        <span class="c1"># here one can also implement the chekc from above.</span>
+</span><span id="read_sfcf-275"><a href="#read_sfcf-275"><span class="linenos">275</span></a>                        <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">fp</span><span class="p">):</span>
+</span><span id="read_sfcf-276"><a href="#read_sfcf-276"><span class="linenos">276</span></a>                            <span class="k">if</span><span class="p">(</span><span class="n">k</span> <span class="o">&gt;=</span> <span class="n">start_read</span> <span class="ow">and</span> <span class="n">k</span> <span class="o">&lt;</span> <span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-277"><a href="#read_sfcf-277"><span class="linenos">277</span></a>                                <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
+</span><span id="read_sfcf-278"><a href="#read_sfcf-278"><span class="linenos">278</span></a>                                <span class="k">if</span> <span class="n">version</span> <span class="o">==</span> <span class="s2">&quot;0.0&quot;</span><span class="p">:</span>
+</span><span id="read_sfcf-279"><a href="#read_sfcf-279"><span class="linenos">279</span></a>                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
+</span><span id="read_sfcf-280"><a href="#read_sfcf-280"><span class="linenos">280</span></a>                                <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-281"><a href="#read_sfcf-281"><span class="linenos">281</span></a>                                    <span class="n">deltas</span><span class="p">[</span><span class="n">k</span> <span class="o">-</span> <span class="n">start_read</span><span class="p">][</span><span class="n">i</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="mi">1</span> <span class="o">+</span> <span class="n">im</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
+</span><span id="read_sfcf-282"><a href="#read_sfcf-282"><span class="linenos">282</span></a>
+</span><span id="read_sfcf-283"><a href="#read_sfcf-283"><span class="linenos">283</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-284"><a href="#read_sfcf-284"><span class="linenos">284</span></a>        <span class="k">if</span> <span class="s2">&quot;files&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-285"><a href="#read_sfcf-285"><span class="linenos">285</span></a>            <span class="n">ls</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;files&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-286"><a href="#read_sfcf-286"><span class="linenos">286</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="read_sfcf-287"><a href="#read_sfcf-287"><span class="linenos">287</span></a>            <span class="k">for</span> <span class="n">exc</span> <span class="ow">in</span> <span class="n">ls</span><span class="p">:</span>
+</span><span id="read_sfcf-288"><a href="#read_sfcf-288"><span class="linenos">288</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">fnmatch</span><span class="p">(</span><span class="n">exc</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">&#39;*.&#39;</span> <span class="o">+</span> <span class="n">name</span><span class="p">):</span>
+</span><span id="read_sfcf-289"><a href="#read_sfcf-289"><span class="linenos">289</span></a>                    <span class="n">ls</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">ls</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">([</span><span class="n">exc</span><span class="p">]))</span>
+</span><span id="read_sfcf-290"><a href="#read_sfcf-290"><span class="linenos">290</span></a>                <span class="n">ls</span><span class="o">.</span><span class="n">sort</span><span class="p">(</span><span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">int</span><span class="p">(</span><span class="n">re</span><span class="o">.</span><span class="n">findall</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;\d+&#39;</span><span class="p">,</span> <span class="n">x</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="read_sfcf-291"><a href="#read_sfcf-291"><span class="linenos">291</span></a>        <span class="n">pattern</span> <span class="o">=</span> <span class="s1">&#39;name      &#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">quarks    &#39;</span> <span class="o">+</span> <span class="n">quarks</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">offset    &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">noffset</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf        &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf</span><span class="p">)</span>
+</span><span id="read_sfcf-292"><a href="#read_sfcf-292"><span class="linenos">292</span></a>        <span class="k">if</span> <span class="n">b2b</span><span class="p">:</span>
+</span><span id="read_sfcf-293"><a href="#read_sfcf-293"><span class="linenos">293</span></a>            <span class="n">pattern</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">wf_2      &#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">wf2</span><span class="p">)</span>
+</span><span id="read_sfcf-294"><a href="#read_sfcf-294"><span class="linenos">294</span></a>        <span class="k">for</span> <span class="n">rep</span><span class="p">,</span> <span class="n">file</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">ls</span><span class="p">):</span>
+</span><span id="read_sfcf-295"><a href="#read_sfcf-295"><span class="linenos">295</span></a>            <span class="n">rep_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-296"><a href="#read_sfcf-296"><span class="linenos">296</span></a>            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">file</span><span class="p">,</span> <span class="s1">&#39;r&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fp</span><span class="p">:</span>
+</span><span id="read_sfcf-297"><a href="#read_sfcf-297"><span class="linenos">297</span></a>                <span class="n">content</span> <span class="o">=</span> <span class="n">fp</span><span class="o">.</span><span class="n">readlines</span><span class="p">()</span>
+</span><span id="read_sfcf-298"><a href="#read_sfcf-298"><span class="linenos">298</span></a>                <span class="n">data_starts</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-299"><a href="#read_sfcf-299"><span class="linenos">299</span></a>                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">content</span><span class="p">):</span>
+</span><span id="read_sfcf-300"><a href="#read_sfcf-300"><span class="linenos">300</span></a>                    <span class="k">if</span> <span class="s2">&quot;[run]&quot;</span> <span class="ow">in</span> <span class="n">line</span><span class="p">:</span>
+</span><span id="read_sfcf-301"><a href="#read_sfcf-301"><span class="linenos">301</span></a>                        <span class="n">data_starts</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">linenumber</span><span class="p">)</span>
+</span><span id="read_sfcf-302"><a href="#read_sfcf-302"><span class="linenos">302</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">data_starts</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">))]))</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="read_sfcf-303"><a href="#read_sfcf-303"><span class="linenos">303</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Irregularities in file structure found, not all runs have the same output length&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-304"><a href="#read_sfcf-304"><span class="linenos">304</span></a>                <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[:</span><span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]]</span>
+</span><span id="read_sfcf-305"><a href="#read_sfcf-305"><span class="linenos">305</span></a>                <span class="k">for</span> <span class="n">linenumber</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">):</span>
+</span><span id="read_sfcf-306"><a href="#read_sfcf-306"><span class="linenos">306</span></a>                    <span class="k">if</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;gauge_name&quot;</span><span class="p">):</span>
+</span><span id="read_sfcf-307"><a href="#read_sfcf-307"><span class="linenos">307</span></a>                        <span class="n">gauge_line</span> <span class="o">=</span> <span class="n">linenumber</span>
+</span><span id="read_sfcf-308"><a href="#read_sfcf-308"><span class="linenos">308</span></a>                    <span class="k">elif</span> <span class="n">line</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s2">&quot;[correlator]&quot;</span><span class="p">):</span>
+</span><span id="read_sfcf-309"><a href="#read_sfcf-309"><span class="linenos">309</span></a>                        <span class="n">corr_line</span> <span class="o">=</span> <span class="n">linenumber</span>
+</span><span id="read_sfcf-310"><a href="#read_sfcf-310"><span class="linenos">310</span></a>                        <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+</span><span id="read_sfcf-311"><a href="#read_sfcf-311"><span class="linenos">311</span></a>                        <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
+</span><span id="read_sfcf-312"><a href="#read_sfcf-312"><span class="linenos">312</span></a>                            <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
+</span><span id="read_sfcf-313"><a href="#read_sfcf-313"><span class="linenos">313</span></a>                        <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
+</span><span id="read_sfcf-314"><a href="#read_sfcf-314"><span class="linenos">314</span></a>                            <span class="n">start_read</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">7</span> <span class="o">+</span> <span class="n">b2b</span>
+</span><span id="read_sfcf-315"><a href="#read_sfcf-315"><span class="linenos">315</span></a>                            <span class="k">break</span>
+</span><span id="read_sfcf-316"><a href="#read_sfcf-316"><span class="linenos">316</span></a>                <span class="n">endline</span> <span class="o">=</span> <span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span>
+</span><span id="read_sfcf-317"><a href="#read_sfcf-317"><span class="linenos">317</span></a>                <span class="k">while</span> <span class="ow">not</span> <span class="n">chunk</span><span class="p">[</span><span class="n">endline</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;</span><span class="se">\n</span><span class="s2">&quot;</span><span class="p">:</span>
+</span><span id="read_sfcf-318"><a href="#read_sfcf-318"><span class="linenos">318</span></a>                    <span class="n">endline</span> <span class="o">+=</span> <span class="mi">1</span>
+</span><span id="read_sfcf-319"><a href="#read_sfcf-319"><span class="linenos">319</span></a>                <span class="n">T</span> <span class="o">=</span> <span class="n">endline</span> <span class="o">-</span> <span class="n">start_read</span>
+</span><span id="read_sfcf-320"><a href="#read_sfcf-320"><span class="linenos">320</span></a>                <span class="k">if</span> <span class="n">rep</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="read_sfcf-321"><a href="#read_sfcf-321"><span class="linenos">321</span></a>                    <span class="n">deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-322"><a href="#read_sfcf-322"><span class="linenos">322</span></a>                    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-323"><a href="#read_sfcf-323"><span class="linenos">323</span></a>                        <span class="n">deltas</span><span class="o">.</span><span class="n">append</span><span class="p">([])</span>
+</span><span id="read_sfcf-324"><a href="#read_sfcf-324"><span class="linenos">324</span></a>                <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-325"><a href="#read_sfcf-325"><span class="linenos">325</span></a>                    <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)))</span>
+</span><span id="read_sfcf-326"><a href="#read_sfcf-326"><span class="linenos">326</span></a>                <span class="c1"># all other chunks should follow the same structure</span>
+</span><span id="read_sfcf-327"><a href="#read_sfcf-327"><span class="linenos">327</span></a>                <span class="k">for</span> <span class="n">cnfg</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">data_starts</span><span class="p">)):</span>
+</span><span id="read_sfcf-328"><a href="#read_sfcf-328"><span class="linenos">328</span></a>                    <span class="n">start</span> <span class="o">=</span> <span class="n">data_starts</span><span class="p">[</span><span class="n">cnfg</span><span class="p">]</span>
+</span><span id="read_sfcf-329"><a href="#read_sfcf-329"><span class="linenos">329</span></a>                    <span class="n">stop</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="read_sfcf-330"><a href="#read_sfcf-330"><span class="linenos">330</span></a>                    <span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">start</span><span class="p">:</span><span class="n">stop</span><span class="p">]</span>
+</span><span id="read_sfcf-331"><a href="#read_sfcf-331"><span class="linenos">331</span></a>                    <span class="k">try</span><span class="p">:</span>
+</span><span id="read_sfcf-332"><a href="#read_sfcf-332"><span class="linenos">332</span></a>                        <span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="read_sfcf-333"><a href="#read_sfcf-333"><span class="linenos">333</span></a>                    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="read_sfcf-334"><a href="#read_sfcf-334"><span class="linenos">334</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directory, problem with chunk around line &quot;</span><span class="p">,</span> <span class="n">gauge_line</span><span class="p">)</span>
+</span><span id="read_sfcf-335"><a href="#read_sfcf-335"><span class="linenos">335</span></a>
+</span><span id="read_sfcf-336"><a href="#read_sfcf-336"><span class="linenos">336</span></a>                    <span class="n">found_pat</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
+</span><span id="read_sfcf-337"><a href="#read_sfcf-337"><span class="linenos">337</span></a>                    <span class="k">for</span> <span class="n">li</span> <span class="ow">in</span> <span class="n">chunk</span><span class="p">[</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">corr_line</span> <span class="o">+</span> <span class="mi">6</span> <span class="o">+</span> <span class="n">b2b</span><span class="p">]:</span>
+</span><span id="read_sfcf-338"><a href="#read_sfcf-338"><span class="linenos">338</span></a>                        <span class="n">found_pat</span> <span class="o">+=</span> <span class="n">li</span>
+</span><span id="read_sfcf-339"><a href="#read_sfcf-339"><span class="linenos">339</span></a>                    <span class="k">if</span> <span class="n">re</span><span class="o">.</span><span class="n">search</span><span class="p">(</span><span class="n">pattern</span><span class="p">,</span> <span class="n">found_pat</span><span class="p">):</span>
+</span><span id="read_sfcf-340"><a href="#read_sfcf-340"><span class="linenos">340</span></a>                        <span class="k">for</span> <span class="n">t</span><span class="p">,</span> <span class="n">line</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">start_read</span><span class="p">:</span><span class="n">start_read</span> <span class="o">+</span> <span class="n">T</span><span class="p">]):</span>
+</span><span id="read_sfcf-341"><a href="#read_sfcf-341"><span class="linenos">341</span></a>                            <span class="n">floats</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">()))</span>
+</span><span id="read_sfcf-342"><a href="#read_sfcf-342"><span class="linenos">342</span></a>                            <span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">][</span><span class="n">rep</span><span class="p">][</span><span class="n">cnfg</span><span class="p">]</span> <span class="o">=</span> <span class="n">floats</span><span class="p">[</span><span class="n">im</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">single</span><span class="p">]</span>
+</span><span id="read_sfcf-343"><a href="#read_sfcf-343"><span class="linenos">343</span></a>            <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">rep_idl</span><span class="p">)</span>
+</span><span id="read_sfcf-344"><a href="#read_sfcf-344"><span class="linenos">344</span></a>
+</span><span id="read_sfcf-345"><a href="#read_sfcf-345"><span class="linenos">345</span></a>    <span class="k">if</span> <span class="s2">&quot;check_configs&quot;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="read_sfcf-346"><a href="#read_sfcf-346"><span class="linenos">346</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Checking for missing configs...&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-347"><a href="#read_sfcf-347"><span class="linenos">347</span></a>        <span class="n">che</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;check_configs&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-348"><a href="#read_sfcf-348"><span class="linenos">348</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">che</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
+</span><span id="read_sfcf-349"><a href="#read_sfcf-349"><span class="linenos">349</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;check_configs has to be the same length as replica!&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-350"><a href="#read_sfcf-350"><span class="linenos">350</span></a>        <span class="k">for</span> <span class="n">r</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)):</span>
+</span><span id="read_sfcf-351"><a href="#read_sfcf-351"><span class="linenos">351</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;checking &quot;</span> <span class="o">+</span> <span class="n">new_names</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
+</span><span id="read_sfcf-352"><a href="#read_sfcf-352"><span class="linenos">352</span></a>            <span class="n">utils</span><span class="o">.</span><span class="n">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">[</span><span class="n">r</span><span class="p">],</span> <span class="n">che</span><span class="p">[</span><span class="n">r</span><span class="p">])</span>
+</span><span id="read_sfcf-353"><a href="#read_sfcf-353"><span class="linenos">353</span></a>        <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Done&quot;</span><span class="p">)</span>
+</span><span id="read_sfcf-354"><a href="#read_sfcf-354"><span class="linenos">354</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="read_sfcf-355"><a href="#read_sfcf-355"><span class="linenos">355</span></a>    <span class="k">for</span> <span class="n">t</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">T</span><span class="p">):</span>
+</span><span id="read_sfcf-356"><a href="#read_sfcf-356"><span class="linenos">356</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">t</span><span class="p">],</span> <span class="n">new_names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">))</span>
+</span><span id="read_sfcf-357"><a href="#read_sfcf-357"><span class="linenos">357</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/input/utils.html b/docs/pyerrors/input/utils.html
index fa518e36..3c876d68 100644
--- a/docs/pyerrors/input/utils.html
+++ b/docs/pyerrors/input/utils.html
@@ -3,14 +3,14 @@
 <head>
     <meta charset="utf-8">
     <meta name="viewport" content="width=device-width, initial-scale=1">
-    <meta name="generator" content="pdoc 11.0.0"/>
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     <title>pyerrors.input.utils API documentation</title>
 
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@@ -54,7 +54,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
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src="data:image/svg+xml,%3Csvg%20xmlns%3D%22http%3A//www.w3.org/2000/svg%22%20role%3D%22img%22%20aria-label%3D%22pdoc%20logo%22%20width%3D%22300%22%20height%3D%22150%22%20viewBox%3D%22-1%200%2060%2030%22%3E%3Ctitle%3Epdoc%3C/title%3E%3Cpath%20d%3D%22M29.621%2021.293c-.011-.273-.214-.475-.511-.481a.5.5%200%200%200-.489.503l-.044%201.393c-.097.551-.695%201.215-1.566%201.704-.577.428-1.306.486-2.193.182-1.426-.617-2.467-1.654-3.304-2.487l-.173-.172a3.43%203.43%200%200%200-.365-.306.49.49%200%200%200-.286-.196c-1.718-1.06-4.931-1.47-7.353.191l-.219.15c-1.707%201.187-3.413%202.131-4.328%201.03-.02-.027-.49-.685-.141-1.763.233-.721.546-2.408.772-4.076.042-.09.067-.187.046-.288.166-1.347.277-2.625.241-3.351%201.378-1.008%202.271-2.586%202.271-4.362%200-.976-.272-1.935-.788-2.774-.057-.094-.122-.18-.184-.268.033-.167.052-.339.052-.516%200-1.477-1.202-2.679-2.679-2.679-.791%200-1.496.352-1.987.9a6.3%206.3%200%200%200-1.001.029c-.492-.564-1.207-.929-2.012-.929-1.477%200-2.679%201.202-2.679%202.679A2.65%202.65%200%200%200%20.97%206.554c-.383.747-.595%201.572-.595%202.41%200%202.311%201.507%204.29%203.635%205.107-.037.699-.147%202.27-.423%203.294l-.137.461c-.622%202.042-2.515%208.257%201.727%2010.643%201.614.908%203.06%201.248%204.317%201.248%202.665%200%204.492-1.524%205.322-2.401%201.476-1.559%202.886-1.854%206.491.82%201.877%201.393%203.514%201.753%204.861%201.068%202.223-1.713%202.811-3.867%203.399-6.374.077-.846.056-1.469.054-1.537zm-4.835%204.313c-.054.305-.156.586-.242.629-.034-.007-.131-.022-.307-.157-.145-.111-.314-.478-.456-.908.221.121.432.25.675.355.115.039.219.051.33.081zm-2.251-1.238c-.05.33-.158.648-.252.694-.022.001-.125-.018-.307-.157-.217-.166-.488-.906-.639-1.573.358.344.754.693%201.198%201.036zm-3.887-2.337c-.006-.116-.018-.231-.041-.342.635.145%201.189.368%201.599.625.097.231.166.481.174.642-.03.049-.055.101-.067.158-.046.013-.128.026-.298.004-.278-.037-.901-.57-1.367-1.087zm-1.127-.497c.116.306.176.625.12.71-.019.014-.117.045-.345.016-.206-.027-.604-.332-.986-.695.41-.051.816-.056%201.211-.031zm-4.535%201.535c.209.22.379.47.358.598-.006.041-.088.138-.351.234-.144.055-.539-.063-.979-.259a11.66%2011.66%200%200%200%20.972-.573zm.983-.664c.359-.237.738-.418%201.126-.554.25.237.479.548.457.694-.006.042-.087.138-.351.235-.174.064-.694-.105-1.232-.375zm-3.381%201.794c-.022.145-.061.29-.149.401-.133.166-.358.248-.69.251h-.002c-.133%200-.306-.26-.45-.621.417.091.854.07%201.291-.031zm-2.066-8.077a4.78%204.78%200%200%201-.775-.584c.172-.115.505-.254.88-.378l-.105.962zm-.331%202.302a10.32%2010.32%200%200%201-.828-.502c.202-.143.576-.328.984-.49l-.156.992zm-.45%202.157l-.701-.403c.214-.115.536-.249.891-.376a11.57%2011.57%200%200%201-.19.779zm-.181%201.716c.064.398.194.702.298.893-.194-.051-.435-.162-.736-.398.061-.119.224-.3.438-.495zM8.87%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zm-.735-.389a1.15%201.15%200%200%200-.314.783%201.16%201.16%200%200%200%201.162%201.162c.457%200%20.842-.27%201.032-.653.026.117.042.238.042.362a1.68%201.68%200%200%201-1.679%201.679%201.68%201.68%200%200%201-1.679-1.679c0-.843.626-1.535%201.436-1.654zM5.059%205.406A1.68%201.68%200%200%201%203.38%207.085a1.68%201.68%200%200%201-1.679-1.679c0-.037.009-.072.011-.109.21.3.541.508.935.508a1.16%201.16%200%200%200%201.162-1.162%201.14%201.14%200%200%200-.474-.912c.015%200%20.03-.005.045-.005.926.001%201.679.754%201.679%201.68zM3.198%204.141c0%20.152-.123.276-.276.276s-.275-.124-.275-.276.123-.276.276-.276.275.124.275.276zM1.375%208.964c0-.52.103-1.035.288-1.52.466.394%201.06.64%201.717.64%201.144%200%202.116-.725%202.499-1.738.383%201.012%201.355%201.738%202.499%201.738.867%200%201.631-.421%202.121-1.062.307.605.478%201.267.478%201.942%200%202.486-2.153%204.51-4.801%204.51s-4.801-2.023-4.801-4.51zm24.342%2019.349c-.985.498-2.267.168-3.813-.979-3.073-2.281-5.453-3.199-7.813-.705-1.315%201.391-4.163%203.365-8.423.97-3.174-1.786-2.239-6.266-1.261-9.479l.146-.492c.276-1.02.395-2.457.444-3.268a6.11%206.11%200%200%200%201.18.115%206.01%206.01%200%200%200%202.536-.562l-.006.175c-.802.215-1.848.612-2.021%201.25-.079.295.021.601.274.837.219.203.415.364.598.501-.667.304-1.243.698-1.311%201.179-.02.144-.022.507.393.787.213.144.395.26.564.365-1.285.521-1.361.96-1.381%201.126-.018.142-.011.496.427.746l.854.489c-.473.389-.971.914-.999%201.429-.018.278.095.532.316.713.675.556%201.231.721%201.653.721.059%200%20.104-.014.158-.02.207.707.641%201.64%201.513%201.64h.013c.8-.008%201.236-.345%201.462-.626.173-.216.268-.457.325-.692.424.195.93.374%201.372.374.151%200%20.294-.021.423-.068.732-.27.944-.704.993-1.021.009-.061.003-.119.002-.179.266.086.538.147.789.147.15%200%20.294-.021.423-.069.542-.2.797-.489.914-.754.237.147.478.258.704.288.106.014.205.021.296.021.356%200%20.595-.101.767-.229.438.435%201.094.992%201.656%201.067.106.014.205.021.296.021a1.56%201.56%200%200%200%20.323-.035c.17.575.453%201.289.866%201.605.358.273.665.362.914.362a.99.99%200%200%200%20.421-.093%201.03%201.03%200%200%200%20.245-.164c.168.42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@@ -71,31 +71,31 @@
 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="sd">&quot;&quot;&quot;Utilities for the input&quot;&quot;&quot;</span>
-
-
-<span class="k">def</span> <span class="nf">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">,</span> <span class="n">che</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Checks if list of configurations is contained in an idl</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    idl : range or list</span>
-<span class="sd">        idl of the current replicum</span>
-<span class="sd">    che : list</span>
-<span class="sd">        list of configurations to be checked against</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">missing</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">che</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">c</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">:</span>
-            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
-    <span class="c1"># print missing configurations such that it can directly be parsed to slurm terminal</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">),</span> <span class="s2">&quot;configs missing&quot;</span><span class="p">)</span>
-        <span class="n">miss_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">missing</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">missing</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-            <span class="n">miss_str</span> <span class="o">+=</span> <span class="s2">&quot;,&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="n">miss_str</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos"> 0</span></a><span class="sd">&quot;&quot;&quot;Utilities for the input&quot;&quot;&quot;</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos"> 1</span></a>
+</span><span id="L-2"><a href="#L-2"><span class="linenos"> 2</span></a>
+</span><span id="L-3"><a href="#L-3"><span class="linenos"> 3</span></a><span class="k">def</span> <span class="nf">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">,</span> <span class="n">che</span><span class="p">):</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos"> 4</span></a>    <span class="sd">&quot;&quot;&quot;Checks if list of configurations is contained in an idl</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a>
+</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="sd">    Parameters</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a><span class="sd">    ----------</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a><span class="sd">    idl : range or list</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="sd">        idl of the current replicum</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos">10</span></a><span class="sd">    che : list</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos">11</span></a><span class="sd">        list of configurations to be checked against</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos">12</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos">13</span></a>    <span class="n">missing</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos">14</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">che</span><span class="p">:</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos">15</span></a>        <span class="k">if</span> <span class="n">c</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">:</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos">16</span></a>            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos">17</span></a>    <span class="c1"># print missing configurations such that it can directly be parsed to slurm terminal</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos">18</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos">19</span></a>        <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">),</span> <span class="s2">&quot;configs missing&quot;</span><span class="p">)</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos">20</span></a>        <span class="n">miss_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">missing</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos">21</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">missing</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos">22</span></a>            <span class="n">miss_str</span> <span class="o">+=</span> <span class="s2">&quot;,&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos">23</span></a>        <span class="nb">print</span><span class="p">(</span><span class="n">miss_str</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -110,28 +110,28 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">,</span> <span class="n">che</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Checks if list of configurations is contained in an idl</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    idl : range or list</span>
-<span class="sd">        idl of the current replicum</span>
-<span class="sd">    che : list</span>
-<span class="sd">        list of configurations to be checked against</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">missing</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">che</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">c</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">:</span>
-            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
-    <span class="c1"># print missing configurations such that it can directly be parsed to slurm terminal</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
-        <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">),</span> <span class="s2">&quot;configs missing&quot;</span><span class="p">)</span>
-        <span class="n">miss_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">missing</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">missing</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-            <span class="n">miss_str</span> <span class="o">+=</span> <span class="s2">&quot;,&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
-        <span class="nb">print</span><span class="p">(</span><span class="n">miss_str</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="check_idl-4"><a href="#check_idl-4"><span class="linenos"> 4</span></a><span class="k">def</span> <span class="nf">check_idl</span><span class="p">(</span><span class="n">idl</span><span class="p">,</span> <span class="n">che</span><span class="p">):</span>
+</span><span id="check_idl-5"><a href="#check_idl-5"><span class="linenos"> 5</span></a>    <span class="sd">&quot;&quot;&quot;Checks if list of configurations is contained in an idl</span>
+</span><span id="check_idl-6"><a href="#check_idl-6"><span class="linenos"> 6</span></a>
+</span><span id="check_idl-7"><a href="#check_idl-7"><span class="linenos"> 7</span></a><span class="sd">    Parameters</span>
+</span><span id="check_idl-8"><a href="#check_idl-8"><span class="linenos"> 8</span></a><span class="sd">    ----------</span>
+</span><span id="check_idl-9"><a href="#check_idl-9"><span class="linenos"> 9</span></a><span class="sd">    idl : range or list</span>
+</span><span id="check_idl-10"><a href="#check_idl-10"><span class="linenos">10</span></a><span class="sd">        idl of the current replicum</span>
+</span><span id="check_idl-11"><a href="#check_idl-11"><span class="linenos">11</span></a><span class="sd">    che : list</span>
+</span><span id="check_idl-12"><a href="#check_idl-12"><span class="linenos">12</span></a><span class="sd">        list of configurations to be checked against</span>
+</span><span id="check_idl-13"><a href="#check_idl-13"><span class="linenos">13</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="check_idl-14"><a href="#check_idl-14"><span class="linenos">14</span></a>    <span class="n">missing</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="check_idl-15"><a href="#check_idl-15"><span class="linenos">15</span></a>    <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">che</span><span class="p">:</span>
+</span><span id="check_idl-16"><a href="#check_idl-16"><span class="linenos">16</span></a>        <span class="k">if</span> <span class="n">c</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">:</span>
+</span><span id="check_idl-17"><a href="#check_idl-17"><span class="linenos">17</span></a>            <span class="n">missing</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
+</span><span id="check_idl-18"><a href="#check_idl-18"><span class="linenos">18</span></a>    <span class="c1"># print missing configurations such that it can directly be parsed to slurm terminal</span>
+</span><span id="check_idl-19"><a href="#check_idl-19"><span class="linenos">19</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="check_idl-20"><a href="#check_idl-20"><span class="linenos">20</span></a>        <span class="nb">print</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">missing</span><span class="p">),</span> <span class="s2">&quot;configs missing&quot;</span><span class="p">)</span>
+</span><span id="check_idl-21"><a href="#check_idl-21"><span class="linenos">21</span></a>        <span class="n">miss_str</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">missing</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="check_idl-22"><a href="#check_idl-22"><span class="linenos">22</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">missing</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="check_idl-23"><a href="#check_idl-23"><span class="linenos">23</span></a>            <span class="n">miss_str</span> <span class="o">+=</span> <span class="s2">&quot;,&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span><span class="p">)</span>
+</span><span id="check_idl-24"><a href="#check_idl-24"><span class="linenos">24</span></a>        <span class="nb">print</span><span class="p">(</span><span class="n">miss_str</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/linalg.html b/docs/pyerrors/linalg.html
index 4f87917d..e6bb9566 100644
--- a/docs/pyerrors/linalg.html
+++ b/docs/pyerrors/linalg.html
@@ -3,14 +3,14 @@
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+    <meta name="generator" content="pdoc 11.1.0"/>
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@@ -81,7 +81,7 @@
 
 
 
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@@ -96,289 +96,289 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>  <span class="c1"># Thinly-wrapped numpy</span>
-<span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">derived_observable</span><span class="p">,</span> <span class="n">CObs</span><span class="p">,</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">import_jackknife</span>
-
-
-<span class="k">def</span> <span class="nf">matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Matrix multiply all operands.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    operands : numpy.ndarray</span>
-<span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
-<span class="sd">        Obs valued.</span>
-
-<span class="sd">    This implementation is faster compared to standard multiplication via the @ operator.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
-        <span class="n">extended_operands</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
-            <span class="n">tmp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">imag</span><span class="p">(</span><span class="n">x</span><span class="p">)))(</span><span class="n">op</span><span class="p">)</span>
-            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-
-        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="n">part</span><span class="p">):</span>
-            <span class="n">stack_r</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">stack_i</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">op_r</span><span class="p">,</span> <span class="n">op_i</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">2</span><span class="p">::</span><span class="mi">2</span><span class="p">],</span> <span class="n">operands</span><span class="p">[</span><span class="mi">3</span><span class="p">::</span><span class="mi">2</span><span class="p">]):</span>
-                <span class="n">tmp_r</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_r</span> <span class="o">-</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_i</span>
-                <span class="n">tmp_i</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_i</span> <span class="o">+</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_r</span>
-
-                <span class="n">stack_r</span> <span class="o">=</span> <span class="n">tmp_r</span>
-                <span class="n">stack_i</span> <span class="o">=</span> <span class="n">tmp_i</span>
-
-            <span class="k">if</span> <span class="n">part</span> <span class="o">==</span> <span class="s1">&#39;Real&#39;</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">stack_r</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">stack_i</span>
-
-        <span class="k">def</span> <span class="nf">multi_dot_r</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Real&#39;</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">multi_dot_i</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Imag&#39;</span><span class="p">)</span>
-
-        <span class="n">Nr</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_r</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">Ni</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_i</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-
-        <span class="n">res</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">Nr</span><span class="p">)</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">Nr</span><span class="p">):</span>
-            <span class="n">res</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">Nr</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">],</span> <span class="n">Ni</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">])</span>
-
-        <span class="k">return</span> <span class="n">res</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
-            <span class="n">stack</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-                <span class="n">stack</span> <span class="o">=</span> <span class="n">stack</span> <span class="o">@</span> <span class="n">op</span>
-            <span class="k">return</span> <span class="n">stack</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot</span><span class="p">,</span> <span class="n">operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">jack_matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Matrix multiply both operands making use of the jackknife approximation.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    operands : numpy.ndarray</span>
-<span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
-<span class="sd">        Obs valued.</span>
-
-<span class="sd">    For large matrices this is considerably faster compared to matmul.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
-                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
-        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-
-        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
-        <span class="k">return</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-
-        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
-        <span class="k">return</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">einsum</span><span class="p">(</span><span class="n">subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">operands</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Wrapper for numpy.einsum</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    subscripts : str</span>
-<span class="sd">        Subscripts for summation (see numpy documentation for details)</span>
-<span class="sd">    operands : numpy.ndarray</span>
-<span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
-<span class="sd">        Obs valued.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
-                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="k">break</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="k">break</span>
-
-    <span class="n">conv_operands</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
-            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
-
-    <span class="n">tmp_subscripts</span> <span class="o">=</span> <span class="s1">&#39;,&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)])</span>
-    <span class="n">extended_subscripts</span> <span class="o">=</span> <span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span> <span class="o">+</span> <span class="p">[</span><span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]])</span>
-    <span class="n">einsum_path</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum_path</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="s1">&#39;optimal&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">jack_einsum</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="n">einsum_path</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">complex</span><span class="p">:</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-    <span class="k">elif</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">float</span><span class="p">:</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Result has unexpected datatype&quot;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">():</span>
-        <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">result</span>
-
-
-<span class="k">def</span> <span class="nf">inv</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Inverse of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">cholesky</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Cholesky decomposition of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">det</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Determinant of Obs valued matrices.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">_scalar_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">det</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_scalar_mat_op</span><span class="p">(</span><span class="n">op</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the matrix to scalar operation op to a given matrix of Obs.&quot;&quot;&quot;</span>
-    <span class="k">def</span> <span class="nf">_mat</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="n">dim</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)))</span>
-
-        <span class="n">mat</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">dim</span><span class="p">):</span>
-            <span class="n">row</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">dim</span><span class="p">):</span>
-                <span class="n">row</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="n">j</span> <span class="o">+</span> <span class="n">dim</span> <span class="o">*</span> <span class="n">i</span><span class="p">])</span>
-            <span class="n">mat</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">row</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="n">op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">mat</span><span class="p">))</span>
-
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-        <span class="n">raveled_obs</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Unproper type of input.&#39;</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">_mat</span><span class="p">,</span> <span class="n">raveled_obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">_mat_mat_op</span><span class="p">(</span><span class="n">op</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the matrix to matrix operation op to a given matrix of Obs.&quot;&quot;&quot;</span>
-    <span class="c1"># Use real representation to calculate matrix operations for complex matrices</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
-        <span class="n">A</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
-        <span class="n">B</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-                <span class="n">A</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">real</span>
-                <span class="n">B</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">A</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span>
-                <span class="n">B</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="n">big_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">block</span><span class="p">([[</span><span class="n">A</span><span class="p">,</span> <span class="o">-</span><span class="n">B</span><span class="p">],</span> <span class="p">[</span><span class="n">B</span><span class="p">,</span> <span class="n">A</span><span class="p">]])</span>
-        <span class="n">op_big_matrix</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">op</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="p">[</span><span class="n">big_matrix</span><span class="p">],</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">dim</span> <span class="o">=</span> <span class="n">op_big_matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">op_A</span> <span class="o">=</span> <span class="n">op_big_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span> <span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">:</span> <span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">]</span>
-        <span class="n">op_B</span> <span class="o">=</span> <span class="n">op_big_matrix</span><span class="p">[</span><span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">:,</span> <span class="mi">0</span><span class="p">:</span> <span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">]</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">op_A</span><span class="p">)</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">op_A</span><span class="p">):</span>
-            <span class="n">res</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">op_A</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">],</span> <span class="n">op_B</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">res</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">op</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="p">[</span><span class="n">obs</span><span class="p">],</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-
-
-<span class="k">def</span> <span class="nf">eigh</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues and eigenvectors of a given hermitian matrix of Obs according to np.linalg.eigh.&quot;&quot;&quot;</span>
-    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="n">v</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">w</span><span class="p">,</span> <span class="n">v</span>
-
-
-<span class="k">def</span> <span class="nf">eig</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues of a given matrix of Obs according to np.linalg.eig.&quot;&quot;&quot;</span>
-    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eig</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">]),</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">w</span>
-
-
-<span class="k">def</span> <span class="nf">pinv</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the Moore-Penrose pseudoinverse of a matrix of Obs.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">obs</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">svd</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the singular value decomposition of a matrix of Obs.&quot;&quot;&quot;</span>
-    <span class="n">u</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="n">s</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="n">vh</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">2</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="k">return</span> <span class="p">(</span><span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>  <span class="c1"># Thinly-wrapped numpy</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">derived_observable</span><span class="p">,</span> <span class="n">CObs</span><span class="p">,</span> <span class="n">Obs</span><span class="p">,</span> <span class="n">import_jackknife</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="k">def</span> <span class="nf">matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a>    <span class="sd">&quot;&quot;&quot;Matrix multiply all operands.</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="sd">    Parameters</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="sd">    ----------</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="sd">    operands : numpy.ndarray</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="sd">        Obs valued.</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd">    This implementation is faster compared to standard multiplication via the @ operator.</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a>    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a>        <span class="n">extended_operands</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a>        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a>            <span class="n">tmp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">imag</span><span class="p">(</span><span class="n">x</span><span class="p">)))(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a>            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a>            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a>        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="n">part</span><span class="p">):</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a>            <span class="n">stack_r</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a>            <span class="n">stack_i</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>            <span class="k">for</span> <span class="n">op_r</span><span class="p">,</span> <span class="n">op_i</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">2</span><span class="p">::</span><span class="mi">2</span><span class="p">],</span> <span class="n">operands</span><span class="p">[</span><span class="mi">3</span><span class="p">::</span><span class="mi">2</span><span class="p">]):</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>                <span class="n">tmp_r</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_r</span> <span class="o">-</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_i</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a>                <span class="n">tmp_i</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_i</span> <span class="o">+</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_r</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a>                <span class="n">stack_r</span> <span class="o">=</span> <span class="n">tmp_r</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a>                <span class="n">stack_i</span> <span class="o">=</span> <span class="n">tmp_i</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>            <span class="k">if</span> <span class="n">part</span> <span class="o">==</span> <span class="s1">&#39;Real&#39;</span><span class="p">:</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>                <span class="k">return</span> <span class="n">stack_r</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>                <span class="k">return</span> <span class="n">stack_i</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>        <span class="k">def</span> <span class="nf">multi_dot_r</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Real&#39;</span><span class="p">)</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a>        <span class="k">def</span> <span class="nf">multi_dot_i</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Imag&#39;</span><span class="p">)</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>        <span class="n">Nr</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_r</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>        <span class="n">Ni</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_i</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>        <span class="n">res</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">Nr</span><span class="p">)</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">Nr</span><span class="p">):</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>            <span class="n">res</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">Nr</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">],</span> <span class="n">Ni</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">])</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>            <span class="n">stack</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>            <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>                <span class="n">stack</span> <span class="o">=</span> <span class="n">stack</span> <span class="o">@</span> <span class="n">op</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>            <span class="k">return</span> <span class="n">stack</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot</span><span class="p">,</span> <span class="n">operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a><span class="k">def</span> <span class="nf">jack_matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>    <span class="sd">&quot;&quot;&quot;Matrix multiply both operands making use of the jackknife approximation.</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a><span class="sd">    Parameters</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a><span class="sd">    ----------</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a><span class="sd">    operands : numpy.ndarray</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a><span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a><span class="sd">        Obs valued.</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a><span class="sd">    For large matrices this is considerably faster compared to matmul.</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>        <span class="k">return</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a>        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>        <span class="k">return</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos">120</span></a>
+</span><span id="L-121"><a href="#L-121"><span class="linenos">121</span></a>
+</span><span id="L-122"><a href="#L-122"><span class="linenos">122</span></a><span class="k">def</span> <span class="nf">einsum</span><span class="p">(</span><span class="n">subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos">123</span></a>    <span class="sd">&quot;&quot;&quot;Wrapper for numpy.einsum</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos">124</span></a>
+</span><span id="L-125"><a href="#L-125"><span class="linenos">125</span></a><span class="sd">    Parameters</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos">126</span></a><span class="sd">    ----------</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos">127</span></a><span class="sd">    subscripts : str</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos">128</span></a><span class="sd">        Subscripts for summation (see numpy documentation for details)</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos">129</span></a><span class="sd">    operands : numpy.ndarray</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos">130</span></a><span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
+</span><span id="L-131"><a href="#L-131"><span class="linenos">131</span></a><span class="sd">        Obs valued.</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos">132</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos">133</span></a>
+</span><span id="L-134"><a href="#L-134"><span class="linenos">134</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-135"><a href="#L-135"><span class="linenos">135</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos">136</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-137"><a href="#L-137"><span class="linenos">137</span></a>            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos">138</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos">139</span></a>
+</span><span id="L-140"><a href="#L-140"><span class="linenos">140</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-141"><a href="#L-141"><span class="linenos">141</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos">142</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos">143</span></a>            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos">144</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+</span><span id="L-145"><a href="#L-145"><span class="linenos">145</span></a>
+</span><span id="L-146"><a href="#L-146"><span class="linenos">146</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos">147</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos">148</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="L-149"><a href="#L-149"><span class="linenos">149</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos">150</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="L-151"><a href="#L-151"><span class="linenos">151</span></a>
+</span><span id="L-152"><a href="#L-152"><span class="linenos">152</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="L-153"><a href="#L-153"><span class="linenos">153</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos">154</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos">155</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos">156</span></a>                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
+</span><span id="L-157"><a href="#L-157"><span class="linenos">157</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos">158</span></a>
+</span><span id="L-159"><a href="#L-159"><span class="linenos">159</span></a>    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
+</span><span id="L-160"><a href="#L-160"><span class="linenos">160</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos">161</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos">162</span></a>            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-163"><a href="#L-163"><span class="linenos">163</span></a>            <span class="k">break</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos">164</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos">165</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-166"><a href="#L-166"><span class="linenos">166</span></a>            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos">167</span></a>            <span class="k">break</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos">168</span></a>
+</span><span id="L-169"><a href="#L-169"><span class="linenos">169</span></a>    <span class="n">conv_operands</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-170"><a href="#L-170"><span class="linenos">170</span></a>    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos">171</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos">172</span></a>            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
+</span><span id="L-173"><a href="#L-173"><span class="linenos">173</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos">174</span></a>            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos">175</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos">176</span></a>            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos">177</span></a>
+</span><span id="L-178"><a href="#L-178"><span class="linenos">178</span></a>    <span class="n">tmp_subscripts</span> <span class="o">=</span> <span class="s1">&#39;,&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)])</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos">179</span></a>    <span class="n">extended_subscripts</span> <span class="o">=</span> <span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span> <span class="o">+</span> <span class="p">[</span><span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]])</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos">180</span></a>    <span class="n">einsum_path</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum_path</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="s1">&#39;optimal&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos">181</span></a>    <span class="n">jack_einsum</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="n">einsum_path</span><span class="p">)</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos">182</span></a>
+</span><span id="L-183"><a href="#L-183"><span class="linenos">183</span></a>    <span class="k">if</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">complex</span><span class="p">:</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos">184</span></a>        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos">185</span></a>    <span class="k">elif</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">float</span><span class="p">:</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a>        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Result has unexpected datatype&quot;</span><span class="p">)</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a>
+</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a>    <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">():</span>
+</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a>        <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos">193</span></a>        <span class="k">return</span> <span class="n">result</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos">194</span></a>
+</span><span id="L-195"><a href="#L-195"><span class="linenos">195</span></a>
+</span><span id="L-196"><a href="#L-196"><span class="linenos">196</span></a><span class="k">def</span> <span class="nf">inv</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos">197</span></a>    <span class="sd">&quot;&quot;&quot;Inverse of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos">198</span></a>    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos">199</span></a>
+</span><span id="L-200"><a href="#L-200"><span class="linenos">200</span></a>
+</span><span id="L-201"><a href="#L-201"><span class="linenos">201</span></a><span class="k">def</span> <span class="nf">cholesky</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="L-202"><a href="#L-202"><span class="linenos">202</span></a>    <span class="sd">&quot;&quot;&quot;Cholesky decomposition of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos">203</span></a>    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos">204</span></a>
+</span><span id="L-205"><a href="#L-205"><span class="linenos">205</span></a>
+</span><span id="L-206"><a href="#L-206"><span class="linenos">206</span></a><span class="k">def</span> <span class="nf">det</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos">207</span></a>    <span class="sd">&quot;&quot;&quot;Determinant of Obs valued matrices.&quot;&quot;&quot;</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos">208</span></a>    <span class="k">return</span> <span class="n">_scalar_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">det</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span><span id="L-209"><a href="#L-209"><span class="linenos">209</span></a>
+</span><span id="L-210"><a href="#L-210"><span class="linenos">210</span></a>
+</span><span id="L-211"><a href="#L-211"><span class="linenos">211</span></a><span class="k">def</span> <span class="nf">_scalar_mat_op</span><span class="p">(</span><span class="n">op</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos">212</span></a>    <span class="sd">&quot;&quot;&quot;Computes the matrix to scalar operation op to a given matrix of Obs.&quot;&quot;&quot;</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos">213</span></a>    <span class="k">def</span> <span class="nf">_mat</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-214"><a href="#L-214"><span class="linenos">214</span></a>        <span class="n">dim</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)))</span>
+</span><span id="L-215"><a href="#L-215"><span class="linenos">215</span></a>
+</span><span id="L-216"><a href="#L-216"><span class="linenos">216</span></a>        <span class="n">mat</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos">217</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">dim</span><span class="p">):</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos">218</span></a>            <span class="n">row</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos">219</span></a>            <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">dim</span><span class="p">):</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos">220</span></a>                <span class="n">row</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="n">j</span> <span class="o">+</span> <span class="n">dim</span> <span class="o">*</span> <span class="n">i</span><span class="p">])</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos">221</span></a>            <span class="n">mat</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">row</span><span class="p">)</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos">222</span></a>
+</span><span id="L-223"><a href="#L-223"><span class="linenos">223</span></a>        <span class="k">return</span> <span class="n">op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">mat</span><span class="p">))</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos">224</span></a>
+</span><span id="L-225"><a href="#L-225"><span class="linenos">225</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos">226</span></a>        <span class="n">raveled_obs</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">ravel</span><span class="p">()))</span><span class="o">.</span><span class="n">tolist</span><span class="p">()</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos">227</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos">228</span></a>        <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;Unproper type of input.&#39;</span><span class="p">)</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos">229</span></a>    <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">_mat</span><span class="p">,</span> <span class="n">raveled_obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos">230</span></a>
+</span><span id="L-231"><a href="#L-231"><span class="linenos">231</span></a>
+</span><span id="L-232"><a href="#L-232"><span class="linenos">232</span></a><span class="k">def</span> <span class="nf">_mat_mat_op</span><span class="p">(</span><span class="n">op</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos">233</span></a>    <span class="sd">&quot;&quot;&quot;Computes the matrix to matrix operation op to a given matrix of Obs.&quot;&quot;&quot;</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos">234</span></a>    <span class="c1"># Use real representation to calculate matrix operations for complex matrices</span>
+</span><span id="L-235"><a href="#L-235"><span class="linenos">235</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos">236</span></a>        <span class="n">A</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos">237</span></a>        <span class="n">B</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
+</span><span id="L-238"><a href="#L-238"><span class="linenos">238</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos">239</span></a>            <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos">240</span></a>                <span class="n">A</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">real</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos">241</span></a>                <span class="n">B</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos">242</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-243"><a href="#L-243"><span class="linenos">243</span></a>                <span class="n">A</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos">244</span></a>                <span class="n">B</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos">245</span></a>        <span class="n">big_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">block</span><span class="p">([[</span><span class="n">A</span><span class="p">,</span> <span class="o">-</span><span class="n">B</span><span class="p">],</span> <span class="p">[</span><span class="n">B</span><span class="p">,</span> <span class="n">A</span><span class="p">]])</span>
+</span><span id="L-246"><a href="#L-246"><span class="linenos">246</span></a>        <span class="n">op_big_matrix</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">op</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="p">[</span><span class="n">big_matrix</span><span class="p">],</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos">247</span></a>        <span class="n">dim</span> <span class="o">=</span> <span class="n">op_big_matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos">248</span></a>        <span class="n">op_A</span> <span class="o">=</span> <span class="n">op_big_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span> <span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">0</span><span class="p">:</span> <span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">]</span>
+</span><span id="L-249"><a href="#L-249"><span class="linenos">249</span></a>        <span class="n">op_B</span> <span class="o">=</span> <span class="n">op_big_matrix</span><span class="p">[</span><span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">:,</span> <span class="mi">0</span><span class="p">:</span> <span class="n">dim</span> <span class="o">//</span> <span class="mi">2</span><span class="p">]</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos">250</span></a>        <span class="n">res</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">op_A</span><span class="p">)</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos">251</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">op_A</span><span class="p">):</span>
+</span><span id="L-252"><a href="#L-252"><span class="linenos">252</span></a>            <span class="n">res</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">op_A</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">],</span> <span class="n">op_B</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">])</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos">253</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos">254</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos">255</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">op</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="p">[</span><span class="n">obs</span><span class="p">],</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos">256</span></a>
+</span><span id="L-257"><a href="#L-257"><span class="linenos">257</span></a>
+</span><span id="L-258"><a href="#L-258"><span class="linenos">258</span></a><span class="k">def</span> <span class="nf">eigh</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos">259</span></a>    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues and eigenvectors of a given hermitian matrix of Obs according to np.linalg.eigh.&quot;&quot;&quot;</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos">260</span></a>    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos">261</span></a>    <span class="n">v</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos">262</span></a>    <span class="k">return</span> <span class="n">w</span><span class="p">,</span> <span class="n">v</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos">263</span></a>
+</span><span id="L-264"><a href="#L-264"><span class="linenos">264</span></a>
+</span><span id="L-265"><a href="#L-265"><span class="linenos">265</span></a><span class="k">def</span> <span class="nf">eig</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-266"><a href="#L-266"><span class="linenos">266</span></a>    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues of a given matrix of Obs according to np.linalg.eig.&quot;&quot;&quot;</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos">267</span></a>    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eig</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">]),</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos">268</span></a>    <span class="k">return</span> <span class="n">w</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos">269</span></a>
+</span><span id="L-270"><a href="#L-270"><span class="linenos">270</span></a>
+</span><span id="L-271"><a href="#L-271"><span class="linenos">271</span></a><span class="k">def</span> <span class="nf">pinv</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos">272</span></a>    <span class="sd">&quot;&quot;&quot;Computes the Moore-Penrose pseudoinverse of a matrix of Obs.&quot;&quot;&quot;</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos">273</span></a>    <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="L-274"><a href="#L-274"><span class="linenos">274</span></a>
+</span><span id="L-275"><a href="#L-275"><span class="linenos">275</span></a>
+</span><span id="L-276"><a href="#L-276"><span class="linenos">276</span></a><span class="k">def</span> <span class="nf">svd</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos">277</span></a>    <span class="sd">&quot;&quot;&quot;Computes the singular value decomposition of a matrix of Obs.&quot;&quot;&quot;</span>
+</span><span id="L-278"><a href="#L-278"><span class="linenos">278</span></a>    <span class="n">u</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos">279</span></a>    <span class="n">s</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos">280</span></a>    <span class="n">vh</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">2</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos">281</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -393,61 +393,61 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Matrix multiply all operands.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    operands : numpy.ndarray</span>
-<span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
-<span class="sd">        Obs valued.</span>
-
-<span class="sd">    This implementation is faster compared to standard multiplication via the @ operator.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
-        <span class="n">extended_operands</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
-            <span class="n">tmp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">imag</span><span class="p">(</span><span class="n">x</span><span class="p">)))(</span><span class="n">op</span><span class="p">)</span>
-            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-
-        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="n">part</span><span class="p">):</span>
-            <span class="n">stack_r</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">stack_i</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">op_r</span><span class="p">,</span> <span class="n">op_i</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">2</span><span class="p">::</span><span class="mi">2</span><span class="p">],</span> <span class="n">operands</span><span class="p">[</span><span class="mi">3</span><span class="p">::</span><span class="mi">2</span><span class="p">]):</span>
-                <span class="n">tmp_r</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_r</span> <span class="o">-</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_i</span>
-                <span class="n">tmp_i</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_i</span> <span class="o">+</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_r</span>
-
-                <span class="n">stack_r</span> <span class="o">=</span> <span class="n">tmp_r</span>
-                <span class="n">stack_i</span> <span class="o">=</span> <span class="n">tmp_i</span>
-
-            <span class="k">if</span> <span class="n">part</span> <span class="o">==</span> <span class="s1">&#39;Real&#39;</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">stack_r</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">stack_i</span>
-
-        <span class="k">def</span> <span class="nf">multi_dot_r</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Real&#39;</span><span class="p">)</span>
-
-        <span class="k">def</span> <span class="nf">multi_dot_i</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Imag&#39;</span><span class="p">)</span>
-
-        <span class="n">Nr</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_r</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">Ni</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_i</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-
-        <span class="n">res</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">Nr</span><span class="p">)</span>
-        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">Nr</span><span class="p">):</span>
-            <span class="n">res</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">Nr</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">],</span> <span class="n">Ni</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">])</span>
-
-        <span class="k">return</span> <span class="n">res</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
-            <span class="n">stack</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-                <span class="n">stack</span> <span class="o">=</span> <span class="n">stack</span> <span class="o">@</span> <span class="n">op</span>
-            <span class="k">return</span> <span class="n">stack</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot</span><span class="p">,</span> <span class="n">operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="matmul-6"><a href="#matmul-6"><span class="linenos"> 6</span></a><span class="k">def</span> <span class="nf">matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="matmul-7"><a href="#matmul-7"><span class="linenos"> 7</span></a>    <span class="sd">&quot;&quot;&quot;Matrix multiply all operands.</span>
+</span><span id="matmul-8"><a href="#matmul-8"><span class="linenos"> 8</span></a>
+</span><span id="matmul-9"><a href="#matmul-9"><span class="linenos"> 9</span></a><span class="sd">    Parameters</span>
+</span><span id="matmul-10"><a href="#matmul-10"><span class="linenos">10</span></a><span class="sd">    ----------</span>
+</span><span id="matmul-11"><a href="#matmul-11"><span class="linenos">11</span></a><span class="sd">    operands : numpy.ndarray</span>
+</span><span id="matmul-12"><a href="#matmul-12"><span class="linenos">12</span></a><span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
+</span><span id="matmul-13"><a href="#matmul-13"><span class="linenos">13</span></a><span class="sd">        Obs valued.</span>
+</span><span id="matmul-14"><a href="#matmul-14"><span class="linenos">14</span></a>
+</span><span id="matmul-15"><a href="#matmul-15"><span class="linenos">15</span></a><span class="sd">    This implementation is faster compared to standard multiplication via the @ operator.</span>
+</span><span id="matmul-16"><a href="#matmul-16"><span class="linenos">16</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="matmul-17"><a href="#matmul-17"><span class="linenos">17</span></a>    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
+</span><span id="matmul-18"><a href="#matmul-18"><span class="linenos">18</span></a>        <span class="n">extended_operands</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="matmul-19"><a href="#matmul-19"><span class="linenos">19</span></a>        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
+</span><span id="matmul-20"><a href="#matmul-20"><span class="linenos">20</span></a>            <span class="n">tmp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">imag</span><span class="p">(</span><span class="n">x</span><span class="p">)))(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="matmul-21"><a href="#matmul-21"><span class="linenos">21</span></a>            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="matmul-22"><a href="#matmul-22"><span class="linenos">22</span></a>            <span class="n">extended_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="matmul-23"><a href="#matmul-23"><span class="linenos">23</span></a>
+</span><span id="matmul-24"><a href="#matmul-24"><span class="linenos">24</span></a>        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="n">part</span><span class="p">):</span>
+</span><span id="matmul-25"><a href="#matmul-25"><span class="linenos">25</span></a>            <span class="n">stack_r</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="matmul-26"><a href="#matmul-26"><span class="linenos">26</span></a>            <span class="n">stack_i</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="matmul-27"><a href="#matmul-27"><span class="linenos">27</span></a>            <span class="k">for</span> <span class="n">op_r</span><span class="p">,</span> <span class="n">op_i</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">2</span><span class="p">::</span><span class="mi">2</span><span class="p">],</span> <span class="n">operands</span><span class="p">[</span><span class="mi">3</span><span class="p">::</span><span class="mi">2</span><span class="p">]):</span>
+</span><span id="matmul-28"><a href="#matmul-28"><span class="linenos">28</span></a>                <span class="n">tmp_r</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_r</span> <span class="o">-</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_i</span>
+</span><span id="matmul-29"><a href="#matmul-29"><span class="linenos">29</span></a>                <span class="n">tmp_i</span> <span class="o">=</span> <span class="n">stack_r</span> <span class="o">@</span> <span class="n">op_i</span> <span class="o">+</span> <span class="n">stack_i</span> <span class="o">@</span> <span class="n">op_r</span>
+</span><span id="matmul-30"><a href="#matmul-30"><span class="linenos">30</span></a>
+</span><span id="matmul-31"><a href="#matmul-31"><span class="linenos">31</span></a>                <span class="n">stack_r</span> <span class="o">=</span> <span class="n">tmp_r</span>
+</span><span id="matmul-32"><a href="#matmul-32"><span class="linenos">32</span></a>                <span class="n">stack_i</span> <span class="o">=</span> <span class="n">tmp_i</span>
+</span><span id="matmul-33"><a href="#matmul-33"><span class="linenos">33</span></a>
+</span><span id="matmul-34"><a href="#matmul-34"><span class="linenos">34</span></a>            <span class="k">if</span> <span class="n">part</span> <span class="o">==</span> <span class="s1">&#39;Real&#39;</span><span class="p">:</span>
+</span><span id="matmul-35"><a href="#matmul-35"><span class="linenos">35</span></a>                <span class="k">return</span> <span class="n">stack_r</span>
+</span><span id="matmul-36"><a href="#matmul-36"><span class="linenos">36</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="matmul-37"><a href="#matmul-37"><span class="linenos">37</span></a>                <span class="k">return</span> <span class="n">stack_i</span>
+</span><span id="matmul-38"><a href="#matmul-38"><span class="linenos">38</span></a>
+</span><span id="matmul-39"><a href="#matmul-39"><span class="linenos">39</span></a>        <span class="k">def</span> <span class="nf">multi_dot_r</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="matmul-40"><a href="#matmul-40"><span class="linenos">40</span></a>            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Real&#39;</span><span class="p">)</span>
+</span><span id="matmul-41"><a href="#matmul-41"><span class="linenos">41</span></a>
+</span><span id="matmul-42"><a href="#matmul-42"><span class="linenos">42</span></a>        <span class="k">def</span> <span class="nf">multi_dot_i</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="matmul-43"><a href="#matmul-43"><span class="linenos">43</span></a>            <span class="k">return</span> <span class="n">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">,</span> <span class="s1">&#39;Imag&#39;</span><span class="p">)</span>
+</span><span id="matmul-44"><a href="#matmul-44"><span class="linenos">44</span></a>
+</span><span id="matmul-45"><a href="#matmul-45"><span class="linenos">45</span></a>        <span class="n">Nr</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_r</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="matmul-46"><a href="#matmul-46"><span class="linenos">46</span></a>        <span class="n">Ni</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot_i</span><span class="p">,</span> <span class="n">extended_operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="matmul-47"><a href="#matmul-47"><span class="linenos">47</span></a>
+</span><span id="matmul-48"><a href="#matmul-48"><span class="linenos">48</span></a>        <span class="n">res</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">Nr</span><span class="p">)</span>
+</span><span id="matmul-49"><a href="#matmul-49"><span class="linenos">49</span></a>        <span class="k">for</span> <span class="p">(</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">),</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">Nr</span><span class="p">):</span>
+</span><span id="matmul-50"><a href="#matmul-50"><span class="linenos">50</span></a>            <span class="n">res</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">Nr</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">],</span> <span class="n">Ni</span><span class="p">[</span><span class="n">n</span><span class="p">,</span> <span class="n">m</span><span class="p">])</span>
+</span><span id="matmul-51"><a href="#matmul-51"><span class="linenos">51</span></a>
+</span><span id="matmul-52"><a href="#matmul-52"><span class="linenos">52</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="matmul-53"><a href="#matmul-53"><span class="linenos">53</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="matmul-54"><a href="#matmul-54"><span class="linenos">54</span></a>        <span class="k">def</span> <span class="nf">multi_dot</span><span class="p">(</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="matmul-55"><a href="#matmul-55"><span class="linenos">55</span></a>            <span class="n">stack</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="matmul-56"><a href="#matmul-56"><span class="linenos">56</span></a>            <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="matmul-57"><a href="#matmul-57"><span class="linenos">57</span></a>                <span class="n">stack</span> <span class="o">=</span> <span class="n">stack</span> <span class="o">@</span> <span class="n">op</span>
+</span><span id="matmul-58"><a href="#matmul-58"><span class="linenos">58</span></a>            <span class="k">return</span> <span class="n">stack</span>
+</span><span id="matmul-59"><a href="#matmul-59"><span class="linenos">59</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="n">multi_dot</span><span class="p">,</span> <span class="n">operands</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -475,66 +475,66 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">jack_matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Matrix multiply both operands making use of the jackknife approximation.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    operands : numpy.ndarray</span>
-<span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
-<span class="sd">        Obs valued.</span>
-
-<span class="sd">    For large matrices this is considerably faster compared to matmul.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
-                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
-        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-
-        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
-        <span class="k">return</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-
-        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
-        <span class="k">return</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="jack_matmul-62"><a href="#jack_matmul-62"><span class="linenos"> 62</span></a><span class="k">def</span> <span class="nf">jack_matmul</span><span class="p">(</span><span class="o">*</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="jack_matmul-63"><a href="#jack_matmul-63"><span class="linenos"> 63</span></a>    <span class="sd">&quot;&quot;&quot;Matrix multiply both operands making use of the jackknife approximation.</span>
+</span><span id="jack_matmul-64"><a href="#jack_matmul-64"><span class="linenos"> 64</span></a>
+</span><span id="jack_matmul-65"><a href="#jack_matmul-65"><span class="linenos"> 65</span></a><span class="sd">    Parameters</span>
+</span><span id="jack_matmul-66"><a href="#jack_matmul-66"><span class="linenos"> 66</span></a><span class="sd">    ----------</span>
+</span><span id="jack_matmul-67"><a href="#jack_matmul-67"><span class="linenos"> 67</span></a><span class="sd">    operands : numpy.ndarray</span>
+</span><span id="jack_matmul-68"><a href="#jack_matmul-68"><span class="linenos"> 68</span></a><span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
+</span><span id="jack_matmul-69"><a href="#jack_matmul-69"><span class="linenos"> 69</span></a><span class="sd">        Obs valued.</span>
+</span><span id="jack_matmul-70"><a href="#jack_matmul-70"><span class="linenos"> 70</span></a>
+</span><span id="jack_matmul-71"><a href="#jack_matmul-71"><span class="linenos"> 71</span></a><span class="sd">    For large matrices this is considerably faster compared to matmul.</span>
+</span><span id="jack_matmul-72"><a href="#jack_matmul-72"><span class="linenos"> 72</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="jack_matmul-73"><a href="#jack_matmul-73"><span class="linenos"> 73</span></a>
+</span><span id="jack_matmul-74"><a href="#jack_matmul-74"><span class="linenos"> 74</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="jack_matmul-75"><a href="#jack_matmul-75"><span class="linenos"> 75</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="jack_matmul-76"><a href="#jack_matmul-76"><span class="linenos"> 76</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="jack_matmul-77"><a href="#jack_matmul-77"><span class="linenos"> 77</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
+</span><span id="jack_matmul-78"><a href="#jack_matmul-78"><span class="linenos"> 78</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="jack_matmul-79"><a href="#jack_matmul-79"><span class="linenos"> 79</span></a>
+</span><span id="jack_matmul-80"><a href="#jack_matmul-80"><span class="linenos"> 80</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="jack_matmul-81"><a href="#jack_matmul-81"><span class="linenos"> 81</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="jack_matmul-82"><a href="#jack_matmul-82"><span class="linenos"> 82</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="jack_matmul-83"><a href="#jack_matmul-83"><span class="linenos"> 83</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
+</span><span id="jack_matmul-84"><a href="#jack_matmul-84"><span class="linenos"> 84</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="jack_matmul-85"><a href="#jack_matmul-85"><span class="linenos"> 85</span></a>
+</span><span id="jack_matmul-86"><a href="#jack_matmul-86"><span class="linenos"> 86</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="jack_matmul-87"><a href="#jack_matmul-87"><span class="linenos"> 87</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="jack_matmul-88"><a href="#jack_matmul-88"><span class="linenos"> 88</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="jack_matmul-89"><a href="#jack_matmul-89"><span class="linenos"> 89</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span>
+</span><span id="jack_matmul-90"><a href="#jack_matmul-90"><span class="linenos"> 90</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="jack_matmul-91"><a href="#jack_matmul-91"><span class="linenos"> 91</span></a>
+</span><span id="jack_matmul-92"><a href="#jack_matmul-92"><span class="linenos"> 92</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="jack_matmul-93"><a href="#jack_matmul-93"><span class="linenos"> 93</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty_like</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="jack_matmul-94"><a href="#jack_matmul-94"><span class="linenos"> 94</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="jack_matmul-95"><a href="#jack_matmul-95"><span class="linenos"> 95</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
+</span><span id="jack_matmul-96"><a href="#jack_matmul-96"><span class="linenos"> 96</span></a>                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
+</span><span id="jack_matmul-97"><a href="#jack_matmul-97"><span class="linenos"> 97</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="jack_matmul-98"><a href="#jack_matmul-98"><span class="linenos"> 98</span></a>
+</span><span id="jack_matmul-99"><a href="#jack_matmul-99"><span class="linenos"> 99</span></a>    <span class="k">if</span> <span class="nb">any</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">):</span>
+</span><span id="jack_matmul-100"><a href="#jack_matmul-100"><span class="linenos">100</span></a>        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="jack_matmul-101"><a href="#jack_matmul-101"><span class="linenos">101</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="jack_matmul-102"><a href="#jack_matmul-102"><span class="linenos">102</span></a>
+</span><span id="jack_matmul-103"><a href="#jack_matmul-103"><span class="linenos">103</span></a>        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="jack_matmul-104"><a href="#jack_matmul-104"><span class="linenos">104</span></a>        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="jack_matmul-105"><a href="#jack_matmul-105"><span class="linenos">105</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="jack_matmul-106"><a href="#jack_matmul-106"><span class="linenos">106</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="jack_matmul-107"><a href="#jack_matmul-107"><span class="linenos">107</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="jack_matmul-108"><a href="#jack_matmul-108"><span class="linenos">108</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
+</span><span id="jack_matmul-109"><a href="#jack_matmul-109"><span class="linenos">109</span></a>        <span class="k">return</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="jack_matmul-110"><a href="#jack_matmul-110"><span class="linenos">110</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="jack_matmul-111"><a href="#jack_matmul-111"><span class="linenos">111</span></a>        <span class="n">name</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="jack_matmul-112"><a href="#jack_matmul-112"><span class="linenos">112</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="jack_matmul-113"><a href="#jack_matmul-113"><span class="linenos">113</span></a>
+</span><span id="jack_matmul-114"><a href="#jack_matmul-114"><span class="linenos">114</span></a>        <span class="n">r</span> <span class="o">=</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">operands</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="jack_matmul-115"><a href="#jack_matmul-115"><span class="linenos">115</span></a>        <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="jack_matmul-116"><a href="#jack_matmul-116"><span class="linenos">116</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="jack_matmul-117"><a href="#jack_matmul-117"><span class="linenos">117</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="jack_matmul-118"><a href="#jack_matmul-118"><span class="linenos">118</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="jack_matmul-119"><a href="#jack_matmul-119"><span class="linenos">119</span></a>                <span class="n">r</span> <span class="o">=</span> <span class="n">r</span> <span class="o">@</span> <span class="n">op</span>
+</span><span id="jack_matmul-120"><a href="#jack_matmul-120"><span class="linenos">120</span></a>        <span class="k">return</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">r</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -562,79 +562,79 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">einsum</span><span class="p">(</span><span class="n">subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">operands</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Wrapper for numpy.einsum</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    subscripts : str</span>
-<span class="sd">        Subscripts for summation (see numpy documentation for details)</span>
-<span class="sd">    operands : numpy.ndarray</span>
-<span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
-<span class="sd">        Obs valued.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
-            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
-        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
-            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
-                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
-        <span class="k">return</span> <span class="n">base_matrix</span>
-
-    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="k">break</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="k">break</span>
-
-    <span class="n">conv_operands</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
-            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
-        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
-
-    <span class="n">tmp_subscripts</span> <span class="o">=</span> <span class="s1">&#39;,&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)])</span>
-    <span class="n">extended_subscripts</span> <span class="o">=</span> <span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span> <span class="o">+</span> <span class="p">[</span><span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]])</span>
-    <span class="n">einsum_path</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum_path</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="s1">&#39;optimal&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="n">jack_einsum</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="n">einsum_path</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">complex</span><span class="p">:</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-    <span class="k">elif</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">float</span><span class="p">:</span>
-        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Result has unexpected datatype&quot;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">():</span>
-        <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="einsum-123"><a href="#einsum-123"><span class="linenos">123</span></a><span class="k">def</span> <span class="nf">einsum</span><span class="p">(</span><span class="n">subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">operands</span><span class="p">):</span>
+</span><span id="einsum-124"><a href="#einsum-124"><span class="linenos">124</span></a>    <span class="sd">&quot;&quot;&quot;Wrapper for numpy.einsum</span>
+</span><span id="einsum-125"><a href="#einsum-125"><span class="linenos">125</span></a>
+</span><span id="einsum-126"><a href="#einsum-126"><span class="linenos">126</span></a><span class="sd">    Parameters</span>
+</span><span id="einsum-127"><a href="#einsum-127"><span class="linenos">127</span></a><span class="sd">    ----------</span>
+</span><span id="einsum-128"><a href="#einsum-128"><span class="linenos">128</span></a><span class="sd">    subscripts : str</span>
+</span><span id="einsum-129"><a href="#einsum-129"><span class="linenos">129</span></a><span class="sd">        Subscripts for summation (see numpy documentation for details)</span>
+</span><span id="einsum-130"><a href="#einsum-130"><span class="linenos">130</span></a><span class="sd">    operands : numpy.ndarray</span>
+</span><span id="einsum-131"><a href="#einsum-131"><span class="linenos">131</span></a><span class="sd">        Arbitrary number of 2d-numpy arrays which can be real or complex</span>
+</span><span id="einsum-132"><a href="#einsum-132"><span class="linenos">132</span></a><span class="sd">        Obs valued.</span>
+</span><span id="einsum-133"><a href="#einsum-133"><span class="linenos">133</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="einsum-134"><a href="#einsum-134"><span class="linenos">134</span></a>
+</span><span id="einsum-135"><a href="#einsum-135"><span class="linenos">135</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="einsum-136"><a href="#einsum-136"><span class="linenos">136</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="einsum-137"><a href="#einsum-137"><span class="linenos">137</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="einsum-138"><a href="#einsum-138"><span class="linenos">138</span></a>            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
+</span><span id="einsum-139"><a href="#einsum-139"><span class="linenos">139</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+</span><span id="einsum-140"><a href="#einsum-140"><span class="linenos">140</span></a>
+</span><span id="einsum-141"><a href="#einsum-141"><span class="linenos">141</span></a>    <span class="k">def</span> <span class="nf">_exp_to_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="einsum-142"><a href="#einsum-142"><span class="linenos">142</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="einsum-143"><a href="#einsum-143"><span class="linenos">143</span></a>        <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">matrix</span><span class="p">):</span>
+</span><span id="einsum-144"><a href="#einsum-144"><span class="linenos">144</span></a>            <span class="n">base_matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">entry</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">()</span> <span class="o">+</span> <span class="mi">1</span><span class="n">j</span> <span class="o">*</span> <span class="n">entry</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">export_jackknife</span><span class="p">())</span>
+</span><span id="einsum-145"><a href="#einsum-145"><span class="linenos">145</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">base_matrix</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">base_matrix</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+</span><span id="einsum-146"><a href="#einsum-146"><span class="linenos">146</span></a>
+</span><span id="einsum-147"><a href="#einsum-147"><span class="linenos">147</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="einsum-148"><a href="#einsum-148"><span class="linenos">148</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="einsum-149"><a href="#einsum-149"><span class="linenos">149</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="einsum-150"><a href="#einsum-150"><span class="linenos">150</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">])</span>
+</span><span id="einsum-151"><a href="#einsum-151"><span class="linenos">151</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="einsum-152"><a href="#einsum-152"><span class="linenos">152</span></a>
+</span><span id="einsum-153"><a href="#einsum-153"><span class="linenos">153</span></a>    <span class="k">def</span> <span class="nf">_imp_from_jack_c</span><span class="p">(</span><span class="n">matrix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">):</span>
+</span><span id="einsum-154"><a href="#einsum-154"><span class="linenos">154</span></a>        <span class="n">base_matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">(</span><span class="n">shape</span><span class="o">=</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="einsum-155"><a href="#einsum-155"><span class="linenos">155</span></a>        <span class="k">for</span> <span class="n">index</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndindex</span><span class="p">(</span><span class="n">matrix</span><span class="o">.</span><span class="n">shape</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]):</span>
+</span><span id="einsum-156"><a href="#einsum-156"><span class="linenos">156</span></a>            <span class="n">base_matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span> <span class="o">=</span> <span class="n">CObs</span><span class="p">(</span><span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]),</span>
+</span><span id="einsum-157"><a href="#einsum-157"><span class="linenos">157</span></a>                                      <span class="n">import_jackknife</span><span class="p">(</span><span class="n">matrix</span><span class="p">[</span><span class="n">index</span><span class="p">]</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="p">[</span><span class="n">idl</span><span class="p">]))</span>
+</span><span id="einsum-158"><a href="#einsum-158"><span class="linenos">158</span></a>        <span class="k">return</span> <span class="n">base_matrix</span>
+</span><span id="einsum-159"><a href="#einsum-159"><span class="linenos">159</span></a>
+</span><span id="einsum-160"><a href="#einsum-160"><span class="linenos">160</span></a>    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
+</span><span id="einsum-161"><a href="#einsum-161"><span class="linenos">161</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="einsum-162"><a href="#einsum-162"><span class="linenos">162</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="einsum-163"><a href="#einsum-163"><span class="linenos">163</span></a>            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="einsum-164"><a href="#einsum-164"><span class="linenos">164</span></a>            <span class="k">break</span>
+</span><span id="einsum-165"><a href="#einsum-165"><span class="linenos">165</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="einsum-166"><a href="#einsum-166"><span class="linenos">166</span></a>            <span class="n">name</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="einsum-167"><a href="#einsum-167"><span class="linenos">167</span></a>            <span class="n">idl</span> <span class="o">=</span> <span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="einsum-168"><a href="#einsum-168"><span class="linenos">168</span></a>            <span class="k">break</span>
+</span><span id="einsum-169"><a href="#einsum-169"><span class="linenos">169</span></a>
+</span><span id="einsum-170"><a href="#einsum-170"><span class="linenos">170</span></a>    <span class="n">conv_operands</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="einsum-171"><a href="#einsum-171"><span class="linenos">171</span></a>    <span class="k">for</span> <span class="n">op</span> <span class="ow">in</span> <span class="n">operands</span><span class="p">:</span>
+</span><span id="einsum-172"><a href="#einsum-172"><span class="linenos">172</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">CObs</span><span class="p">):</span>
+</span><span id="einsum-173"><a href="#einsum-173"><span class="linenos">173</span></a>            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack_c</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
+</span><span id="einsum-174"><a href="#einsum-174"><span class="linenos">174</span></a>        <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">op</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="einsum-175"><a href="#einsum-175"><span class="linenos">175</span></a>            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_exp_to_jack</span><span class="p">(</span><span class="n">op</span><span class="p">))</span>
+</span><span id="einsum-176"><a href="#einsum-176"><span class="linenos">176</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="einsum-177"><a href="#einsum-177"><span class="linenos">177</span></a>            <span class="n">conv_operands</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">op</span><span class="p">)</span>
+</span><span id="einsum-178"><a href="#einsum-178"><span class="linenos">178</span></a>
+</span><span id="einsum-179"><a href="#einsum-179"><span class="linenos">179</span></a>    <span class="n">tmp_subscripts</span> <span class="o">=</span> <span class="s1">&#39;,&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)])</span>
+</span><span id="einsum-180"><a href="#einsum-180"><span class="linenos">180</span></a>    <span class="n">extended_subscripts</span> <span class="o">=</span> <span class="s1">&#39;-&gt;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">o</span> <span class="o">+</span> <span class="s1">&#39;...&#39;</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span> <span class="o">+</span> <span class="p">[</span><span class="n">tmp_subscripts</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;-&gt;&#39;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]])</span>
+</span><span id="einsum-181"><a href="#einsum-181"><span class="linenos">181</span></a>    <span class="n">einsum_path</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum_path</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="s1">&#39;optimal&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="einsum-182"><a href="#einsum-182"><span class="linenos">182</span></a>    <span class="n">jack_einsum</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">einsum</span><span class="p">(</span><span class="n">extended_subscripts</span><span class="p">,</span> <span class="o">*</span><span class="n">conv_operands</span><span class="p">,</span> <span class="n">optimize</span><span class="o">=</span><span class="n">einsum_path</span><span class="p">)</span>
+</span><span id="einsum-183"><a href="#einsum-183"><span class="linenos">183</span></a>
+</span><span id="einsum-184"><a href="#einsum-184"><span class="linenos">184</span></a>    <span class="k">if</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">complex</span><span class="p">:</span>
+</span><span id="einsum-185"><a href="#einsum-185"><span class="linenos">185</span></a>        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack_c</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="einsum-186"><a href="#einsum-186"><span class="linenos">186</span></a>    <span class="k">elif</span> <span class="n">jack_einsum</span><span class="o">.</span><span class="n">dtype</span> <span class="o">==</span> <span class="nb">float</span><span class="p">:</span>
+</span><span id="einsum-187"><a href="#einsum-187"><span class="linenos">187</span></a>        <span class="n">result</span> <span class="o">=</span> <span class="n">_imp_from_jack</span><span class="p">(</span><span class="n">jack_einsum</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
+</span><span id="einsum-188"><a href="#einsum-188"><span class="linenos">188</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="einsum-189"><a href="#einsum-189"><span class="linenos">189</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Result has unexpected datatype&quot;</span><span class="p">)</span>
+</span><span id="einsum-190"><a href="#einsum-190"><span class="linenos">190</span></a>
+</span><span id="einsum-191"><a href="#einsum-191"><span class="linenos">191</span></a>    <span class="k">if</span> <span class="n">result</span><span class="o">.</span><span class="n">shape</span> <span class="o">==</span> <span class="p">():</span>
+</span><span id="einsum-192"><a href="#einsum-192"><span class="linenos">192</span></a>        <span class="k">return</span> <span class="n">result</span><span class="o">.</span><span class="n">flat</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="einsum-193"><a href="#einsum-193"><span class="linenos">193</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="einsum-194"><a href="#einsum-194"><span class="linenos">194</span></a>        <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -663,10 +663,10 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">inv</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Inverse of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="inv-197"><a href="#inv-197"><span class="linenos">197</span></a><span class="k">def</span> <span class="nf">inv</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="inv-198"><a href="#inv-198"><span class="linenos">198</span></a>    <span class="sd">&quot;&quot;&quot;Inverse of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
+</span><span id="inv-199"><a href="#inv-199"><span class="linenos">199</span></a>    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">inv</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -685,10 +685,10 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">cholesky</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Cholesky decomposition of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="cholesky-202"><a href="#cholesky-202"><span class="linenos">202</span></a><span class="k">def</span> <span class="nf">cholesky</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="cholesky-203"><a href="#cholesky-203"><span class="linenos">203</span></a>    <span class="sd">&quot;&quot;&quot;Cholesky decomposition of Obs or CObs valued matrices.&quot;&quot;&quot;</span>
+</span><span id="cholesky-204"><a href="#cholesky-204"><span class="linenos">204</span></a>    <span class="k">return</span> <span class="n">_mat_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -707,10 +707,10 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">det</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Determinant of Obs valued matrices.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">_scalar_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">det</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="det-207"><a href="#det-207"><span class="linenos">207</span></a><span class="k">def</span> <span class="nf">det</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+</span><span id="det-208"><a href="#det-208"><span class="linenos">208</span></a>    <span class="sd">&quot;&quot;&quot;Determinant of Obs valued matrices.&quot;&quot;&quot;</span>
+</span><span id="det-209"><a href="#det-209"><span class="linenos">209</span></a>    <span class="k">return</span> <span class="n">_scalar_mat_op</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">det</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -729,12 +729,12 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">eigh</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues and eigenvectors of a given hermitian matrix of Obs according to np.linalg.eigh.&quot;&quot;&quot;</span>
-    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="n">v</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">w</span><span class="p">,</span> <span class="n">v</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="eigh-259"><a href="#eigh-259"><span class="linenos">259</span></a><span class="k">def</span> <span class="nf">eigh</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="eigh-260"><a href="#eigh-260"><span class="linenos">260</span></a>    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues and eigenvectors of a given hermitian matrix of Obs according to np.linalg.eigh.&quot;&quot;&quot;</span>
+</span><span id="eigh-261"><a href="#eigh-261"><span class="linenos">261</span></a>    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="eigh-262"><a href="#eigh-262"><span class="linenos">262</span></a>    <span class="n">v</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="eigh-263"><a href="#eigh-263"><span class="linenos">263</span></a>    <span class="k">return</span> <span class="n">w</span><span class="p">,</span> <span class="n">v</span>
+</span></pre></div>
 
         </details>
 
@@ -753,11 +753,11 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">eig</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues of a given matrix of Obs according to np.linalg.eig.&quot;&quot;&quot;</span>
-    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eig</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">]),</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">w</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="eig-266"><a href="#eig-266"><span class="linenos">266</span></a><span class="k">def</span> <span class="nf">eig</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="eig-267"><a href="#eig-267"><span class="linenos">267</span></a>    <span class="sd">&quot;&quot;&quot;Computes the eigenvalues of a given matrix of Obs according to np.linalg.eig.&quot;&quot;&quot;</span>
+</span><span id="eig-268"><a href="#eig-268"><span class="linenos">268</span></a>    <span class="n">w</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">real</span><span class="p">(</span><span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eig</span><span class="p">(</span><span class="n">x</span><span class="p">)[</span><span class="mi">0</span><span class="p">]),</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="eig-269"><a href="#eig-269"><span class="linenos">269</span></a>    <span class="k">return</span> <span class="n">w</span>
+</span></pre></div>
 
         </details>
 
@@ -776,10 +776,10 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">pinv</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the Moore-Penrose pseudoinverse of a matrix of Obs.&quot;&quot;&quot;</span>
-    <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">obs</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="pinv-272"><a href="#pinv-272"><span class="linenos">272</span></a><span class="k">def</span> <span class="nf">pinv</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="pinv-273"><a href="#pinv-273"><span class="linenos">273</span></a>    <span class="sd">&quot;&quot;&quot;Computes the Moore-Penrose pseudoinverse of a matrix of Obs.&quot;&quot;&quot;</span>
+</span><span id="pinv-274"><a href="#pinv-274"><span class="linenos">274</span></a>    <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">pinv</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">obs</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -798,13 +798,13 @@ Obs valued.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">svd</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Computes the singular value decomposition of a matrix of Obs.&quot;&quot;&quot;</span>
-    <span class="n">u</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="n">s</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="n">vh</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">2</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
-    <span class="k">return</span> <span class="p">(</span><span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="svd-277"><a href="#svd-277"><span class="linenos">277</span></a><span class="k">def</span> <span class="nf">svd</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="svd-278"><a href="#svd-278"><span class="linenos">278</span></a>    <span class="sd">&quot;&quot;&quot;Computes the singular value decomposition of a matrix of Obs.&quot;&quot;&quot;</span>
+</span><span id="svd-279"><a href="#svd-279"><span class="linenos">279</span></a>    <span class="n">u</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">0</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="svd-280"><a href="#svd-280"><span class="linenos">280</span></a>    <span class="n">s</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">1</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="svd-281"><a href="#svd-281"><span class="linenos">281</span></a>    <span class="n">vh</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">svd</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">full_matrices</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">2</span><span class="p">],</span> <span class="n">obs</span><span class="p">)</span>
+</span><span id="svd-282"><a href="#svd-282"><span class="linenos">282</span></a>    <span class="k">return</span> <span class="p">(</span><span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/misc.html b/docs/pyerrors/misc.html
index 1810428a..f00ffb45 100644
--- a/docs/pyerrors/misc.html
+++ b/docs/pyerrors/misc.html
@@ -3,14 +3,14 @@
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+    <meta name="generator" content="pdoc 11.1.0"/>
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@@ -78,127 +78,127 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">pickle</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span>
-
-
-<span class="k">def</span> <span class="nf">dump_object</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Dump object into pickle file.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    obj : object</span>
-<span class="sd">        object to be saved in the pickle file</span>
-<span class="sd">    name : str</span>
-<span class="sd">        name of the file</span>
-<span class="sd">    path : str</span>
-<span class="sd">        specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">file_name</span> <span class="o">=</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
-        <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">load_object</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Load object from pickle file.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the file</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">pseudo_Obs</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="n">dvalue</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Generate an Obs object with given value, dvalue and name for test purposes</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    value : float</span>
-<span class="sd">        central value of the Obs to be generated.</span>
-<span class="sd">    dvalue : float</span>
-<span class="sd">        error of the Obs to be generated.</span>
-<span class="sd">    name : str</span>
-<span class="sd">        name of the ensemble for which the Obs is to be generated.</span>
-<span class="sd">    samples: int</span>
-<span class="sd">        number of samples for the Obs (default 1000).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">dvalue</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">Obs</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">+</span> <span class="n">value</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
-            <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">dvalue</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">samples</span><span class="p">),</span> <span class="n">samples</span><span class="p">)]</span>
-            <span class="n">deltas</span> <span class="o">-=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
-            <span class="n">deltas</span> <span class="o">*=</span> <span class="n">dvalue</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">3</span> <span class="o">/</span> <span class="n">samples</span><span class="p">)</span>
-            <span class="n">deltas</span> <span class="o">+=</span> <span class="n">value</span>
-            <span class="n">res</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="n">res</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="n">S</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">tau_exp</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">res</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">-</span> <span class="n">dvalue</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">1e-10</span> <span class="o">*</span> <span class="n">dvalue</span><span class="p">:</span>
-                <span class="k">break</span>
-
-        <span class="n">res</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="n">res</span>
-
-
-<span class="k">def</span> <span class="nf">gen_correlated_data</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">tau</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Generate observables with given covariance and autocorrelation times.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    means : list</span>
-<span class="sd">        list containing the mean value of each observable.</span>
-<span class="sd">    cov : numpy.ndarray</span>
-<span class="sd">        covariance matrix for the data to be generated.</span>
-<span class="sd">    name : str</span>
-<span class="sd">        ensemble name for the data to be geneated.</span>
-<span class="sd">    tau : float or list</span>
-<span class="sd">        can either be a real number or a list with an entry for</span>
-<span class="sd">        every dataset.</span>
-<span class="sd">    samples : int</span>
-<span class="sd">        number of samples to be generated for each observable.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)</span> <span class="o">==</span> <span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">tau</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.5</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All integrated autocorrelations have to be &gt;= 0.5.&#39;</span><span class="p">)</span>
-
-    <span class="n">a</span> <span class="o">=</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">rand</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">multivariate_normal</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">means</span><span class="p">),</span> <span class="n">cov</span> <span class="o">*</span> <span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">)</span>
-
-    <span class="c1"># Normalize samples such that sample variance matches input</span>
-    <span class="n">norm</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">ddof</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">rand</span><span class="o">.</span><span class="n">T</span><span class="p">])</span>
-    <span class="n">rand</span> <span class="o">=</span> <span class="n">rand</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">norm</span><span class="p">))</span>
-
-    <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">rand</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">samples</span><span class="p">):</span>
-        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">*</span> <span class="n">rand</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span> <span class="o">*</span> <span class="n">data</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">means</span>
-    <span class="k">return</span> <span class="p">[</span><span class="n">Obs</span><span class="p">([</span><span class="n">dat</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">]</span>
-
-
-<span class="k">def</span> <span class="nf">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">otype</span><span class="o">=</span><span class="n">Obs</span><span class="p">):</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">otype</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Wrong data type in list.&quot;</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">otype</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Wrong data type in list.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to have the same state &#39;is_merged&#39;.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to have the same property &#39;reweighted&#39;.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_content</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">e_content</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to be defined on the same set of configs.&quot;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to be defined on the same set of configurations.&quot;</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">  0</span></a><span class="kn">import</span> <span class="nn">pickle</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">  1</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">  2</span></a><span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">  3</span></a>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">  4</span></a>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">  5</span></a><span class="k">def</span> <span class="nf">dump_object</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">  6</span></a>    <span class="sd">&quot;&quot;&quot;Dump object into pickle file.</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">  7</span></a>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">  8</span></a><span class="sd">    Parameters</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">  9</span></a><span class="sd">    ----------</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos"> 10</span></a><span class="sd">    obj : object</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos"> 11</span></a><span class="sd">        object to be saved in the pickle file</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos"> 12</span></a><span class="sd">    name : str</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos"> 13</span></a><span class="sd">        name of the file</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos"> 14</span></a><span class="sd">    path : str</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos"> 15</span></a><span class="sd">        specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos"> 16</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos"> 17</span></a>    <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos"> 18</span></a>        <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos"> 19</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos"> 20</span></a>        <span class="n">file_name</span> <span class="o">=</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos"> 21</span></a>    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos"> 22</span></a>        <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos"> 23</span></a>
+</span><span id="L-24"><a href="#L-24"><span class="linenos"> 24</span></a>
+</span><span id="L-25"><a href="#L-25"><span class="linenos"> 25</span></a><span class="k">def</span> <span class="nf">load_object</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos"> 26</span></a>    <span class="sd">&quot;&quot;&quot;Load object from pickle file.</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos"> 27</span></a>
+</span><span id="L-28"><a href="#L-28"><span class="linenos"> 28</span></a><span class="sd">    Parameters</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos"> 29</span></a><span class="sd">    ----------</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos"> 30</span></a><span class="sd">    path : str</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos"> 31</span></a><span class="sd">        path to the file</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos"> 32</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos"> 33</span></a>    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos"> 34</span></a>        <span class="k">return</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos"> 35</span></a>
+</span><span id="L-36"><a href="#L-36"><span class="linenos"> 36</span></a>
+</span><span id="L-37"><a href="#L-37"><span class="linenos"> 37</span></a><span class="k">def</span> <span class="nf">pseudo_Obs</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="n">dvalue</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos"> 38</span></a>    <span class="sd">&quot;&quot;&quot;Generate an Obs object with given value, dvalue and name for test purposes</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos"> 39</span></a>
+</span><span id="L-40"><a href="#L-40"><span class="linenos"> 40</span></a><span class="sd">    Parameters</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos"> 41</span></a><span class="sd">    ----------</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a><span class="sd">    value : float</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a><span class="sd">        central value of the Obs to be generated.</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a><span class="sd">    dvalue : float</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a><span class="sd">        error of the Obs to be generated.</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a><span class="sd">    name : str</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a><span class="sd">        name of the ensemble for which the Obs is to be generated.</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a><span class="sd">    samples: int</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a><span class="sd">        number of samples for the Obs (default 1000).</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>    <span class="k">if</span> <span class="n">dvalue</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a>        <span class="k">return</span> <span class="n">Obs</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">+</span> <span class="n">value</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos"> 54</span></a>        <span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos"> 55</span></a>            <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">dvalue</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">samples</span><span class="p">),</span> <span class="n">samples</span><span class="p">)]</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos"> 56</span></a>            <span class="n">deltas</span> <span class="o">-=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos"> 57</span></a>            <span class="n">deltas</span> <span class="o">*=</span> <span class="n">dvalue</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">3</span> <span class="o">/</span> <span class="n">samples</span><span class="p">)</span>
+</span><span id="L-58"><a href="#L-58"><span class="linenos"> 58</span></a>            <span class="n">deltas</span> <span class="o">+=</span> <span class="n">value</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos"> 59</span></a>            <span class="n">res</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos"> 60</span></a>            <span class="n">res</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="n">S</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">tau_exp</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos"> 61</span></a>            <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">res</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">-</span> <span class="n">dvalue</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">1e-10</span> <span class="o">*</span> <span class="n">dvalue</span><span class="p">:</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos"> 62</span></a>                <span class="k">break</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos"> 63</span></a>
+</span><span id="L-64"><a href="#L-64"><span class="linenos"> 64</span></a>        <span class="n">res</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos"> 65</span></a>
+</span><span id="L-66"><a href="#L-66"><span class="linenos"> 66</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos"> 67</span></a>
+</span><span id="L-68"><a href="#L-68"><span class="linenos"> 68</span></a>
+</span><span id="L-69"><a href="#L-69"><span class="linenos"> 69</span></a><span class="k">def</span> <span class="nf">gen_correlated_data</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">tau</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos"> 70</span></a>    <span class="sd">&quot;&quot;&quot; Generate observables with given covariance and autocorrelation times.</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos"> 71</span></a>
+</span><span id="L-72"><a href="#L-72"><span class="linenos"> 72</span></a><span class="sd">    Parameters</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos"> 73</span></a><span class="sd">    ----------</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos"> 74</span></a><span class="sd">    means : list</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos"> 75</span></a><span class="sd">        list containing the mean value of each observable.</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos"> 76</span></a><span class="sd">    cov : numpy.ndarray</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos"> 77</span></a><span class="sd">        covariance matrix for the data to be generated.</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos"> 78</span></a><span class="sd">    name : str</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a><span class="sd">        ensemble name for the data to be geneated.</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a><span class="sd">    tau : float or list</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a><span class="sd">        can either be a real number or a list with an entry for</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a><span class="sd">        every dataset.</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a><span class="sd">    samples : int</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a><span class="sd">        number of samples to be generated for each observable.</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-86"><a href="#L-86"><span class="linenos"> 86</span></a>
+</span><span id="L-87"><a href="#L-87"><span class="linenos"> 87</span></a>    <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)</span> <span class="o">==</span> <span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos"> 88</span></a>    <span class="n">tau</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos"> 89</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.5</span><span class="p">:</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos"> 90</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All integrated autocorrelations have to be &gt;= 0.5.&#39;</span><span class="p">)</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos"> 91</span></a>
+</span><span id="L-92"><a href="#L-92"><span class="linenos"> 92</span></a>    <span class="n">a</span> <span class="o">=</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos"> 93</span></a>    <span class="n">rand</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">multivariate_normal</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">means</span><span class="p">),</span> <span class="n">cov</span> <span class="o">*</span> <span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">)</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos"> 94</span></a>
+</span><span id="L-95"><a href="#L-95"><span class="linenos"> 95</span></a>    <span class="c1"># Normalize samples such that sample variance matches input</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos"> 96</span></a>    <span class="n">norm</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">ddof</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">rand</span><span class="o">.</span><span class="n">T</span><span class="p">])</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos"> 97</span></a>    <span class="n">rand</span> <span class="o">=</span> <span class="n">rand</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">norm</span><span class="p">))</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos"> 98</span></a>
+</span><span id="L-99"><a href="#L-99"><span class="linenos"> 99</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">rand</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos">100</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">samples</span><span class="p">):</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos">101</span></a>        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">*</span> <span class="n">rand</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span> <span class="o">*</span> <span class="n">data</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos">102</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">means</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos">103</span></a>    <span class="k">return</span> <span class="p">[</span><span class="n">Obs</span><span class="p">([</span><span class="n">dat</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">]</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos">104</span></a>
+</span><span id="L-105"><a href="#L-105"><span class="linenos">105</span></a>
+</span><span id="L-106"><a href="#L-106"><span class="linenos">106</span></a><span class="k">def</span> <span class="nf">_assert_equal_properties</span><span class="p">(</span><span class="n">ol</span><span class="p">,</span> <span class="n">otype</span><span class="o">=</span><span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos">107</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">otype</span><span class="p">):</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos">108</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Wrong data type in list.&quot;</span><span class="p">)</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos">109</span></a>    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">ol</span><span class="p">[</span><span class="mi">1</span><span class="p">:]:</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos">110</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">otype</span><span class="p">):</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos">111</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Wrong data type in list.&quot;</span><span class="p">)</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos">112</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span><span class="p">:</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to have the same state &#39;is_merged&#39;.&quot;</span><span class="p">)</span>
+</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span><span class="p">:</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to have the same property &#39;reweighted&#39;.&quot;</span><span class="p">)</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">e_content</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">e_content</span><span class="p">:</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to be defined on the same set of configs.&quot;</span><span class="p">)</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span> <span class="o">==</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">:</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;All Obs in list have to be defined on the same set of configurations.&quot;</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -213,25 +213,25 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">dump_object</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Dump object into pickle file.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    obj : object</span>
-<span class="sd">        object to be saved in the pickle file</span>
-<span class="sd">    name : str</span>
-<span class="sd">        name of the file</span>
-<span class="sd">    path : str</span>
-<span class="sd">        specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">file_name</span> <span class="o">=</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
-        <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="dump_object-6"><a href="#dump_object-6"><span class="linenos"> 6</span></a><span class="k">def</span> <span class="nf">dump_object</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="dump_object-7"><a href="#dump_object-7"><span class="linenos"> 7</span></a>    <span class="sd">&quot;&quot;&quot;Dump object into pickle file.</span>
+</span><span id="dump_object-8"><a href="#dump_object-8"><span class="linenos"> 8</span></a>
+</span><span id="dump_object-9"><a href="#dump_object-9"><span class="linenos"> 9</span></a><span class="sd">    Parameters</span>
+</span><span id="dump_object-10"><a href="#dump_object-10"><span class="linenos">10</span></a><span class="sd">    ----------</span>
+</span><span id="dump_object-11"><a href="#dump_object-11"><span class="linenos">11</span></a><span class="sd">    obj : object</span>
+</span><span id="dump_object-12"><a href="#dump_object-12"><span class="linenos">12</span></a><span class="sd">        object to be saved in the pickle file</span>
+</span><span id="dump_object-13"><a href="#dump_object-13"><span class="linenos">13</span></a><span class="sd">    name : str</span>
+</span><span id="dump_object-14"><a href="#dump_object-14"><span class="linenos">14</span></a><span class="sd">        name of the file</span>
+</span><span id="dump_object-15"><a href="#dump_object-15"><span class="linenos">15</span></a><span class="sd">    path : str</span>
+</span><span id="dump_object-16"><a href="#dump_object-16"><span class="linenos">16</span></a><span class="sd">        specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="dump_object-17"><a href="#dump_object-17"><span class="linenos">17</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="dump_object-18"><a href="#dump_object-18"><span class="linenos">18</span></a>    <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="dump_object-19"><a href="#dump_object-19"><span class="linenos">19</span></a>        <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
+</span><span id="dump_object-20"><a href="#dump_object-20"><span class="linenos">20</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="dump_object-21"><a href="#dump_object-21"><span class="linenos">21</span></a>        <span class="n">file_name</span> <span class="o">=</span> <span class="n">name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span>
+</span><span id="dump_object-22"><a href="#dump_object-22"><span class="linenos">22</span></a>    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
+</span><span id="dump_object-23"><a href="#dump_object-23"><span class="linenos">23</span></a>        <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -261,17 +261,17 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">load_object</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Load object from pickle file.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    path : str</span>
-<span class="sd">        path to the file</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="load_object-26"><a href="#load_object-26"><span class="linenos">26</span></a><span class="k">def</span> <span class="nf">load_object</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
+</span><span id="load_object-27"><a href="#load_object-27"><span class="linenos">27</span></a>    <span class="sd">&quot;&quot;&quot;Load object from pickle file.</span>
+</span><span id="load_object-28"><a href="#load_object-28"><span class="linenos">28</span></a>
+</span><span id="load_object-29"><a href="#load_object-29"><span class="linenos">29</span></a><span class="sd">    Parameters</span>
+</span><span id="load_object-30"><a href="#load_object-30"><span class="linenos">30</span></a><span class="sd">    ----------</span>
+</span><span id="load_object-31"><a href="#load_object-31"><span class="linenos">31</span></a><span class="sd">    path : str</span>
+</span><span id="load_object-32"><a href="#load_object-32"><span class="linenos">32</span></a><span class="sd">        path to the file</span>
+</span><span id="load_object-33"><a href="#load_object-33"><span class="linenos">33</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="load_object-34"><a href="#load_object-34"><span class="linenos">34</span></a>    <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="s1">&#39;rb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
+</span><span id="load_object-35"><a href="#load_object-35"><span class="linenos">35</span></a>        <span class="k">return</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -297,37 +297,37 @@ path to the file</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">pseudo_Obs</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="n">dvalue</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Generate an Obs object with given value, dvalue and name for test purposes</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    value : float</span>
-<span class="sd">        central value of the Obs to be generated.</span>
-<span class="sd">    dvalue : float</span>
-<span class="sd">        error of the Obs to be generated.</span>
-<span class="sd">    name : str</span>
-<span class="sd">        name of the ensemble for which the Obs is to be generated.</span>
-<span class="sd">    samples: int</span>
-<span class="sd">        number of samples for the Obs (default 1000).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="n">dvalue</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">Obs</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">+</span> <span class="n">value</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
-            <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">dvalue</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">samples</span><span class="p">),</span> <span class="n">samples</span><span class="p">)]</span>
-            <span class="n">deltas</span> <span class="o">-=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
-            <span class="n">deltas</span> <span class="o">*=</span> <span class="n">dvalue</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">3</span> <span class="o">/</span> <span class="n">samples</span><span class="p">)</span>
-            <span class="n">deltas</span> <span class="o">+=</span> <span class="n">value</span>
-            <span class="n">res</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="n">res</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="n">S</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">tau_exp</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">res</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">-</span> <span class="n">dvalue</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">1e-10</span> <span class="o">*</span> <span class="n">dvalue</span><span class="p">:</span>
-                <span class="k">break</span>
-
-        <span class="n">res</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
-
-        <span class="k">return</span> <span class="n">res</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="pseudo_Obs-38"><a href="#pseudo_Obs-38"><span class="linenos">38</span></a><span class="k">def</span> <span class="nf">pseudo_Obs</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="n">dvalue</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
+</span><span id="pseudo_Obs-39"><a href="#pseudo_Obs-39"><span class="linenos">39</span></a>    <span class="sd">&quot;&quot;&quot;Generate an Obs object with given value, dvalue and name for test purposes</span>
+</span><span id="pseudo_Obs-40"><a href="#pseudo_Obs-40"><span class="linenos">40</span></a>
+</span><span id="pseudo_Obs-41"><a href="#pseudo_Obs-41"><span class="linenos">41</span></a><span class="sd">    Parameters</span>
+</span><span id="pseudo_Obs-42"><a href="#pseudo_Obs-42"><span class="linenos">42</span></a><span class="sd">    ----------</span>
+</span><span id="pseudo_Obs-43"><a href="#pseudo_Obs-43"><span class="linenos">43</span></a><span class="sd">    value : float</span>
+</span><span id="pseudo_Obs-44"><a href="#pseudo_Obs-44"><span class="linenos">44</span></a><span class="sd">        central value of the Obs to be generated.</span>
+</span><span id="pseudo_Obs-45"><a href="#pseudo_Obs-45"><span class="linenos">45</span></a><span class="sd">    dvalue : float</span>
+</span><span id="pseudo_Obs-46"><a href="#pseudo_Obs-46"><span class="linenos">46</span></a><span class="sd">        error of the Obs to be generated.</span>
+</span><span id="pseudo_Obs-47"><a href="#pseudo_Obs-47"><span class="linenos">47</span></a><span class="sd">    name : str</span>
+</span><span id="pseudo_Obs-48"><a href="#pseudo_Obs-48"><span class="linenos">48</span></a><span class="sd">        name of the ensemble for which the Obs is to be generated.</span>
+</span><span id="pseudo_Obs-49"><a href="#pseudo_Obs-49"><span class="linenos">49</span></a><span class="sd">    samples: int</span>
+</span><span id="pseudo_Obs-50"><a href="#pseudo_Obs-50"><span class="linenos">50</span></a><span class="sd">        number of samples for the Obs (default 1000).</span>
+</span><span id="pseudo_Obs-51"><a href="#pseudo_Obs-51"><span class="linenos">51</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="pseudo_Obs-52"><a href="#pseudo_Obs-52"><span class="linenos">52</span></a>    <span class="k">if</span> <span class="n">dvalue</span> <span class="o">&lt;=</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="pseudo_Obs-53"><a href="#pseudo_Obs-53"><span class="linenos">53</span></a>        <span class="k">return</span> <span class="n">Obs</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">+</span> <span class="n">value</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="pseudo_Obs-54"><a href="#pseudo_Obs-54"><span class="linenos">54</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="pseudo_Obs-55"><a href="#pseudo_Obs-55"><span class="linenos">55</span></a>        <span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">100</span><span class="p">):</span>
+</span><span id="pseudo_Obs-56"><a href="#pseudo_Obs-56"><span class="linenos">56</span></a>            <span class="n">deltas</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">normal</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">dvalue</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">samples</span><span class="p">),</span> <span class="n">samples</span><span class="p">)]</span>
+</span><span id="pseudo_Obs-57"><a href="#pseudo_Obs-57"><span class="linenos">57</span></a>            <span class="n">deltas</span> <span class="o">-=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
+</span><span id="pseudo_Obs-58"><a href="#pseudo_Obs-58"><span class="linenos">58</span></a>            <span class="n">deltas</span> <span class="o">*=</span> <span class="n">dvalue</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span><span class="p">))</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">3</span> <span class="o">/</span> <span class="n">samples</span><span class="p">)</span>
+</span><span id="pseudo_Obs-59"><a href="#pseudo_Obs-59"><span class="linenos">59</span></a>            <span class="n">deltas</span> <span class="o">+=</span> <span class="n">value</span>
+</span><span id="pseudo_Obs-60"><a href="#pseudo_Obs-60"><span class="linenos">60</span></a>            <span class="n">res</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="pseudo_Obs-61"><a href="#pseudo_Obs-61"><span class="linenos">61</span></a>            <span class="n">res</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="n">S</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">tau_exp</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="pseudo_Obs-62"><a href="#pseudo_Obs-62"><span class="linenos">62</span></a>            <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">res</span><span class="o">.</span><span class="n">dvalue</span> <span class="o">-</span> <span class="n">dvalue</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">1e-10</span> <span class="o">*</span> <span class="n">dvalue</span><span class="p">:</span>
+</span><span id="pseudo_Obs-63"><a href="#pseudo_Obs-63"><span class="linenos">63</span></a>                <span class="k">break</span>
+</span><span id="pseudo_Obs-64"><a href="#pseudo_Obs-64"><span class="linenos">64</span></a>
+</span><span id="pseudo_Obs-65"><a href="#pseudo_Obs-65"><span class="linenos">65</span></a>        <span class="n">res</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+</span><span id="pseudo_Obs-66"><a href="#pseudo_Obs-66"><span class="linenos">66</span></a>
+</span><span id="pseudo_Obs-67"><a href="#pseudo_Obs-67"><span class="linenos">67</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span></pre></div>
 
         </details>
 
@@ -359,42 +359,42 @@ number of samples for the Obs (default 1000).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">gen_correlated_data</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">tau</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot; Generate observables with given covariance and autocorrelation times.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    means : list</span>
-<span class="sd">        list containing the mean value of each observable.</span>
-<span class="sd">    cov : numpy.ndarray</span>
-<span class="sd">        covariance matrix for the data to be generated.</span>
-<span class="sd">    name : str</span>
-<span class="sd">        ensemble name for the data to be geneated.</span>
-<span class="sd">    tau : float or list</span>
-<span class="sd">        can either be a real number or a list with an entry for</span>
-<span class="sd">        every dataset.</span>
-<span class="sd">    samples : int</span>
-<span class="sd">        number of samples to be generated for each observable.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)</span> <span class="o">==</span> <span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-    <span class="n">tau</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.5</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All integrated autocorrelations have to be &gt;= 0.5.&#39;</span><span class="p">)</span>
-
-    <span class="n">a</span> <span class="o">=</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="n">rand</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">multivariate_normal</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">means</span><span class="p">),</span> <span class="n">cov</span> <span class="o">*</span> <span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">)</span>
-
-    <span class="c1"># Normalize samples such that sample variance matches input</span>
-    <span class="n">norm</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">ddof</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">rand</span><span class="o">.</span><span class="n">T</span><span class="p">])</span>
-    <span class="n">rand</span> <span class="o">=</span> <span class="n">rand</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">norm</span><span class="p">))</span>
-
-    <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">rand</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">samples</span><span class="p">):</span>
-        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">*</span> <span class="n">rand</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span> <span class="o">*</span> <span class="n">data</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">means</span>
-    <span class="k">return</span> <span class="p">[</span><span class="n">Obs</span><span class="p">([</span><span class="n">dat</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">]</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="gen_correlated_data-70"><a href="#gen_correlated_data-70"><span class="linenos"> 70</span></a><span class="k">def</span> <span class="nf">gen_correlated_data</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">tau</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">samples</span><span class="o">=</span><span class="mi">1000</span><span class="p">):</span>
+</span><span id="gen_correlated_data-71"><a href="#gen_correlated_data-71"><span class="linenos"> 71</span></a>    <span class="sd">&quot;&quot;&quot; Generate observables with given covariance and autocorrelation times.</span>
+</span><span id="gen_correlated_data-72"><a href="#gen_correlated_data-72"><span class="linenos"> 72</span></a>
+</span><span id="gen_correlated_data-73"><a href="#gen_correlated_data-73"><span class="linenos"> 73</span></a><span class="sd">    Parameters</span>
+</span><span id="gen_correlated_data-74"><a href="#gen_correlated_data-74"><span class="linenos"> 74</span></a><span class="sd">    ----------</span>
+</span><span id="gen_correlated_data-75"><a href="#gen_correlated_data-75"><span class="linenos"> 75</span></a><span class="sd">    means : list</span>
+</span><span id="gen_correlated_data-76"><a href="#gen_correlated_data-76"><span class="linenos"> 76</span></a><span class="sd">        list containing the mean value of each observable.</span>
+</span><span id="gen_correlated_data-77"><a href="#gen_correlated_data-77"><span class="linenos"> 77</span></a><span class="sd">    cov : numpy.ndarray</span>
+</span><span id="gen_correlated_data-78"><a href="#gen_correlated_data-78"><span class="linenos"> 78</span></a><span class="sd">        covariance matrix for the data to be generated.</span>
+</span><span id="gen_correlated_data-79"><a href="#gen_correlated_data-79"><span class="linenos"> 79</span></a><span class="sd">    name : str</span>
+</span><span id="gen_correlated_data-80"><a href="#gen_correlated_data-80"><span class="linenos"> 80</span></a><span class="sd">        ensemble name for the data to be geneated.</span>
+</span><span id="gen_correlated_data-81"><a href="#gen_correlated_data-81"><span class="linenos"> 81</span></a><span class="sd">    tau : float or list</span>
+</span><span id="gen_correlated_data-82"><a href="#gen_correlated_data-82"><span class="linenos"> 82</span></a><span class="sd">        can either be a real number or a list with an entry for</span>
+</span><span id="gen_correlated_data-83"><a href="#gen_correlated_data-83"><span class="linenos"> 83</span></a><span class="sd">        every dataset.</span>
+</span><span id="gen_correlated_data-84"><a href="#gen_correlated_data-84"><span class="linenos"> 84</span></a><span class="sd">    samples : int</span>
+</span><span id="gen_correlated_data-85"><a href="#gen_correlated_data-85"><span class="linenos"> 85</span></a><span class="sd">        number of samples to be generated for each observable.</span>
+</span><span id="gen_correlated_data-86"><a href="#gen_correlated_data-86"><span class="linenos"> 86</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="gen_correlated_data-87"><a href="#gen_correlated_data-87"><span class="linenos"> 87</span></a>
+</span><span id="gen_correlated_data-88"><a href="#gen_correlated_data-88"><span class="linenos"> 88</span></a>    <span class="k">assert</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)</span> <span class="o">==</span> <span class="n">cov</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="gen_correlated_data-89"><a href="#gen_correlated_data-89"><span class="linenos"> 89</span></a>    <span class="n">tau</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span>
+</span><span id="gen_correlated_data-90"><a href="#gen_correlated_data-90"><span class="linenos"> 90</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">min</span><span class="p">(</span><span class="n">tau</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mf">0.5</span><span class="p">:</span>
+</span><span id="gen_correlated_data-91"><a href="#gen_correlated_data-91"><span class="linenos"> 91</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All integrated autocorrelations have to be &gt;= 0.5.&#39;</span><span class="p">)</span>
+</span><span id="gen_correlated_data-92"><a href="#gen_correlated_data-92"><span class="linenos"> 92</span></a>
+</span><span id="gen_correlated_data-93"><a href="#gen_correlated_data-93"><span class="linenos"> 93</span></a>    <span class="n">a</span> <span class="o">=</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">tau</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="gen_correlated_data-94"><a href="#gen_correlated_data-94"><span class="linenos"> 94</span></a>    <span class="n">rand</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">multivariate_normal</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">means</span><span class="p">),</span> <span class="n">cov</span> <span class="o">*</span> <span class="n">samples</span><span class="p">,</span> <span class="n">samples</span><span class="p">)</span>
+</span><span id="gen_correlated_data-95"><a href="#gen_correlated_data-95"><span class="linenos"> 95</span></a>
+</span><span id="gen_correlated_data-96"><a href="#gen_correlated_data-96"><span class="linenos"> 96</span></a>    <span class="c1"># Normalize samples such that sample variance matches input</span>
+</span><span id="gen_correlated_data-97"><a href="#gen_correlated_data-97"><span class="linenos"> 97</span></a>    <span class="n">norm</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">var</span><span class="p">(</span><span class="n">o</span><span class="p">,</span> <span class="n">ddof</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">samples</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">rand</span><span class="o">.</span><span class="n">T</span><span class="p">])</span>
+</span><span id="gen_correlated_data-98"><a href="#gen_correlated_data-98"><span class="linenos"> 98</span></a>    <span class="n">rand</span> <span class="o">=</span> <span class="n">rand</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">norm</span><span class="p">))</span>
+</span><span id="gen_correlated_data-99"><a href="#gen_correlated_data-99"><span class="linenos"> 99</span></a>
+</span><span id="gen_correlated_data-100"><a href="#gen_correlated_data-100"><span class="linenos">100</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">rand</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span>
+</span><span id="gen_correlated_data-101"><a href="#gen_correlated_data-101"><span class="linenos">101</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">samples</span><span class="p">):</span>
+</span><span id="gen_correlated_data-102"><a href="#gen_correlated_data-102"><span class="linenos">102</span></a>        <span class="n">data</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">a</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">*</span> <span class="n">rand</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">+</span> <span class="n">a</span> <span class="o">*</span> <span class="n">data</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="gen_correlated_data-103"><a href="#gen_correlated_data-103"><span class="linenos">103</span></a>    <span class="n">corr_data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">means</span>
+</span><span id="gen_correlated_data-104"><a href="#gen_correlated_data-104"><span class="linenos">104</span></a>    <span class="k">return</span> <span class="p">[</span><span class="n">Obs</span><span class="p">([</span><span class="n">dat</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">dat</span> <span class="ow">in</span> <span class="n">corr_data</span><span class="o">.</span><span class="n">T</span><span class="p">]</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/mpm.html b/docs/pyerrors/mpm.html
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@@ -54,7 +54,7 @@
 
 
 
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@@ -69,65 +69,65 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">scipy.linalg</span>
-<span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span>
-<span class="kn">from</span> <span class="nn">.linalg</span> <span class="kn">import</span> <span class="n">svd</span><span class="p">,</span> <span class="n">eig</span>
-
-
-<span class="k">def</span> <span class="nf">matrix_pencil_method</span><span class="p">(</span><span class="n">corrs</span><span class="p">,</span> <span class="n">k</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">p</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Matrix pencil method to extract k energy levels from data</span>
-
-<span class="sd">    Implementation of the matrix pencil method based on</span>
-<span class="sd">    eq. (2.17) of Y. Hua, T. K. Sarkar, IEEE Trans. Acoust. 38, 814-824 (1990)</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    data : list</span>
-<span class="sd">        can be a list of Obs for the analysis of a single correlator, or a list of lists</span>
-<span class="sd">        of Obs if several correlators are to analyzed at once.</span>
-<span class="sd">    k : int</span>
-<span class="sd">        Number of states to extract (default 1).</span>
-<span class="sd">    p : int</span>
-<span class="sd">        matrix pencil parameter which filters noise. The optimal value is expected between</span>
-<span class="sd">        len(data)/3 and 2*len(data)/3. The computation is more expensive the closer p is</span>
-<span class="sd">        to len(data)/2 but could possibly suppress more noise (default len(data)//2).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">corrs</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">corrs</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">corrs</span>
-
-    <span class="n">lengths</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
-    <span class="k">if</span> <span class="n">lengths</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="n">lengths</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">lengths</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All datasets have to have the same length.&#39;</span><span class="p">)</span>
-
-    <span class="n">data_sets</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-    <span class="n">n_data</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-
-    <span class="k">if</span> <span class="n">p</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">p</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">n_data</span> <span class="o">//</span> <span class="mi">2</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">n_data</span> <span class="o">&lt;=</span> <span class="n">p</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The pencil p has to be smaller than the number of data samples.&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span> <span class="ow">or</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Cannot extract&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="s1">&#39;energy levels with p=&#39;</span><span class="p">,</span> <span class="n">p</span><span class="p">,</span> <span class="s1">&#39;and N-p=&#39;</span><span class="p">,</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">)</span>
-
-    <span class="c1"># Construct the hankel matrices</span>
-    <span class="n">matrix</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">data_sets</span><span class="p">):</span>
-        <span class="n">matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">hankel</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][:</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">],</span> <span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:]))</span>
-    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-    <span class="c1"># Construct y1 and y2</span>
-    <span class="n">y1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="p">:</span><span class="n">p</span><span class="p">])</span>
-    <span class="n">y2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="mi">1</span><span class="p">:])</span>
-    <span class="c1"># Apply SVD to y2</span>
-    <span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span> <span class="o">=</span> <span class="n">svd</span><span class="p">(</span><span class="n">y2</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-    <span class="c1"># Construct z from y1 and SVD of y2, setting all singular values beyond the kth to zero</span>
-    <span class="n">z</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mf">1.</span> <span class="o">/</span> <span class="n">s</span><span class="p">[:</span><span class="n">k</span><span class="p">])</span> <span class="o">@</span> <span class="n">u</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">y1</span> <span class="o">@</span> <span class="n">vh</span><span class="o">.</span><span class="n">T</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span>
-    <span class="c1"># Return the sorted logarithms of the real eigenvalues as Obs</span>
-    <span class="n">energy_levels</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">eig</span><span class="p">(</span><span class="n">z</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
-    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">energy_levels</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">abs</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos"> 0</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos"> 1</span></a><span class="kn">import</span> <span class="nn">scipy.linalg</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos"> 2</span></a><span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">Obs</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos"> 3</span></a><span class="kn">from</span> <span class="nn">.linalg</span> <span class="kn">import</span> <span class="n">svd</span><span class="p">,</span> <span class="n">eig</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos"> 4</span></a>
+</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a>
+</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="k">def</span> <span class="nf">matrix_pencil_method</span><span class="p">(</span><span class="n">corrs</span><span class="p">,</span> <span class="n">k</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">p</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a>    <span class="sd">&quot;&quot;&quot;Matrix pencil method to extract k energy levels from data</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a>
+</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="sd">    Implementation of the matrix pencil method based on</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos">10</span></a><span class="sd">    eq. (2.17) of Y. Hua, T. K. Sarkar, IEEE Trans. Acoust. 38, 814-824 (1990)</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos">11</span></a>
+</span><span id="L-12"><a href="#L-12"><span class="linenos">12</span></a><span class="sd">    Parameters</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos">13</span></a><span class="sd">    ----------</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos">14</span></a><span class="sd">    data : list</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos">15</span></a><span class="sd">        can be a list of Obs for the analysis of a single correlator, or a list of lists</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos">16</span></a><span class="sd">        of Obs if several correlators are to analyzed at once.</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos">17</span></a><span class="sd">    k : int</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos">18</span></a><span class="sd">        Number of states to extract (default 1).</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos">19</span></a><span class="sd">    p : int</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos">20</span></a><span class="sd">        matrix pencil parameter which filters noise. The optimal value is expected between</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos">21</span></a><span class="sd">        len(data)/3 and 2*len(data)/3. The computation is more expensive the closer p is</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos">22</span></a><span class="sd">        to len(data)/2 but could possibly suppress more noise (default len(data)//2).</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos">23</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos">24</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">corrs</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos">25</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">corrs</span><span class="p">]</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos">26</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos">27</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">corrs</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos">28</span></a>
+</span><span id="L-29"><a href="#L-29"><span class="linenos">29</span></a>    <span class="n">lengths</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos">30</span></a>    <span class="k">if</span> <span class="n">lengths</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="n">lengths</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">lengths</span><span class="p">):</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos">31</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All datasets have to have the same length.&#39;</span><span class="p">)</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos">32</span></a>
+</span><span id="L-33"><a href="#L-33"><span class="linenos">33</span></a>    <span class="n">data_sets</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos">34</span></a>    <span class="n">n_data</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos">35</span></a>
+</span><span id="L-36"><a href="#L-36"><span class="linenos">36</span></a>    <span class="k">if</span> <span class="n">p</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos">37</span></a>        <span class="n">p</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">n_data</span> <span class="o">//</span> <span class="mi">2</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos">38</span></a>    <span class="k">if</span> <span class="n">n_data</span> <span class="o">&lt;=</span> <span class="n">p</span><span class="p">:</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos">39</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The pencil p has to be smaller than the number of data samples.&#39;</span><span class="p">)</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos">40</span></a>    <span class="k">if</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span> <span class="ow">or</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span><span class="p">:</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos">41</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Cannot extract&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="s1">&#39;energy levels with p=&#39;</span><span class="p">,</span> <span class="n">p</span><span class="p">,</span> <span class="s1">&#39;and N-p=&#39;</span><span class="p">,</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">)</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos">42</span></a>
+</span><span id="L-43"><a href="#L-43"><span class="linenos">43</span></a>    <span class="c1"># Construct the hankel matrices</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos">44</span></a>    <span class="n">matrix</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos">45</span></a>    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">data_sets</span><span class="p">):</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos">46</span></a>        <span class="n">matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">hankel</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][:</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">],</span> <span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:]))</span>
+</span><span id="L-47"><a href="#L-47"><span class="linenos">47</span></a>    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos">48</span></a>    <span class="c1"># Construct y1 and y2</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos">49</span></a>    <span class="n">y1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="p">:</span><span class="n">p</span><span class="p">])</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos">50</span></a>    <span class="n">y2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="mi">1</span><span class="p">:])</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos">51</span></a>    <span class="c1"># Apply SVD to y2</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos">52</span></a>    <span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span> <span class="o">=</span> <span class="n">svd</span><span class="p">(</span><span class="n">y2</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos">53</span></a>    <span class="c1"># Construct z from y1 and SVD of y2, setting all singular values beyond the kth to zero</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos">54</span></a>    <span class="n">z</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mf">1.</span> <span class="o">/</span> <span class="n">s</span><span class="p">[:</span><span class="n">k</span><span class="p">])</span> <span class="o">@</span> <span class="n">u</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">y1</span> <span class="o">@</span> <span class="n">vh</span><span class="o">.</span><span class="n">T</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span>
+</span><span id="L-55"><a href="#L-55"><span class="linenos">55</span></a>    <span class="c1"># Return the sorted logarithms of the real eigenvalues as Obs</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos">56</span></a>    <span class="n">energy_levels</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">eig</span><span class="p">(</span><span class="n">z</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos">57</span></a>    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">energy_levels</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">abs</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -142,59 +142,59 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">matrix_pencil_method</span><span class="p">(</span><span class="n">corrs</span><span class="p">,</span> <span class="n">k</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">p</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Matrix pencil method to extract k energy levels from data</span>
-
-<span class="sd">    Implementation of the matrix pencil method based on</span>
-<span class="sd">    eq. (2.17) of Y. Hua, T. K. Sarkar, IEEE Trans. Acoust. 38, 814-824 (1990)</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    data : list</span>
-<span class="sd">        can be a list of Obs for the analysis of a single correlator, or a list of lists</span>
-<span class="sd">        of Obs if several correlators are to analyzed at once.</span>
-<span class="sd">    k : int</span>
-<span class="sd">        Number of states to extract (default 1).</span>
-<span class="sd">    p : int</span>
-<span class="sd">        matrix pencil parameter which filters noise. The optimal value is expected between</span>
-<span class="sd">        len(data)/3 and 2*len(data)/3. The computation is more expensive the closer p is</span>
-<span class="sd">        to len(data)/2 but could possibly suppress more noise (default len(data)//2).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">corrs</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">corrs</span><span class="p">]</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">data</span> <span class="o">=</span> <span class="n">corrs</span>
-
-    <span class="n">lengths</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
-    <span class="k">if</span> <span class="n">lengths</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="n">lengths</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">lengths</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All datasets have to have the same length.&#39;</span><span class="p">)</span>
-
-    <span class="n">data_sets</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-    <span class="n">n_data</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-
-    <span class="k">if</span> <span class="n">p</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
-        <span class="n">p</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">n_data</span> <span class="o">//</span> <span class="mi">2</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">n_data</span> <span class="o">&lt;=</span> <span class="n">p</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The pencil p has to be smaller than the number of data samples.&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span> <span class="ow">or</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Cannot extract&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="s1">&#39;energy levels with p=&#39;</span><span class="p">,</span> <span class="n">p</span><span class="p">,</span> <span class="s1">&#39;and N-p=&#39;</span><span class="p">,</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">)</span>
-
-    <span class="c1"># Construct the hankel matrices</span>
-    <span class="n">matrix</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">data_sets</span><span class="p">):</span>
-        <span class="n">matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">hankel</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][:</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">],</span> <span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:]))</span>
-    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
-    <span class="c1"># Construct y1 and y2</span>
-    <span class="n">y1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="p">:</span><span class="n">p</span><span class="p">])</span>
-    <span class="n">y2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="mi">1</span><span class="p">:])</span>
-    <span class="c1"># Apply SVD to y2</span>
-    <span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span> <span class="o">=</span> <span class="n">svd</span><span class="p">(</span><span class="n">y2</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-    <span class="c1"># Construct z from y1 and SVD of y2, setting all singular values beyond the kth to zero</span>
-    <span class="n">z</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mf">1.</span> <span class="o">/</span> <span class="n">s</span><span class="p">[:</span><span class="n">k</span><span class="p">])</span> <span class="o">@</span> <span class="n">u</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">y1</span> <span class="o">@</span> <span class="n">vh</span><span class="o">.</span><span class="n">T</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span>
-    <span class="c1"># Return the sorted logarithms of the real eigenvalues as Obs</span>
-    <span class="n">energy_levels</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">eig</span><span class="p">(</span><span class="n">z</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
-    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">energy_levels</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">abs</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="matrix_pencil_method-7"><a href="#matrix_pencil_method-7"><span class="linenos"> 7</span></a><span class="k">def</span> <span class="nf">matrix_pencil_method</span><span class="p">(</span><span class="n">corrs</span><span class="p">,</span> <span class="n">k</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">p</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="matrix_pencil_method-8"><a href="#matrix_pencil_method-8"><span class="linenos"> 8</span></a>    <span class="sd">&quot;&quot;&quot;Matrix pencil method to extract k energy levels from data</span>
+</span><span id="matrix_pencil_method-9"><a href="#matrix_pencil_method-9"><span class="linenos"> 9</span></a>
+</span><span id="matrix_pencil_method-10"><a href="#matrix_pencil_method-10"><span class="linenos">10</span></a><span class="sd">    Implementation of the matrix pencil method based on</span>
+</span><span id="matrix_pencil_method-11"><a href="#matrix_pencil_method-11"><span class="linenos">11</span></a><span class="sd">    eq. (2.17) of Y. Hua, T. K. Sarkar, IEEE Trans. Acoust. 38, 814-824 (1990)</span>
+</span><span id="matrix_pencil_method-12"><a href="#matrix_pencil_method-12"><span class="linenos">12</span></a>
+</span><span id="matrix_pencil_method-13"><a href="#matrix_pencil_method-13"><span class="linenos">13</span></a><span class="sd">    Parameters</span>
+</span><span id="matrix_pencil_method-14"><a href="#matrix_pencil_method-14"><span class="linenos">14</span></a><span class="sd">    ----------</span>
+</span><span id="matrix_pencil_method-15"><a href="#matrix_pencil_method-15"><span class="linenos">15</span></a><span class="sd">    data : list</span>
+</span><span id="matrix_pencil_method-16"><a href="#matrix_pencil_method-16"><span class="linenos">16</span></a><span class="sd">        can be a list of Obs for the analysis of a single correlator, or a list of lists</span>
+</span><span id="matrix_pencil_method-17"><a href="#matrix_pencil_method-17"><span class="linenos">17</span></a><span class="sd">        of Obs if several correlators are to analyzed at once.</span>
+</span><span id="matrix_pencil_method-18"><a href="#matrix_pencil_method-18"><span class="linenos">18</span></a><span class="sd">    k : int</span>
+</span><span id="matrix_pencil_method-19"><a href="#matrix_pencil_method-19"><span class="linenos">19</span></a><span class="sd">        Number of states to extract (default 1).</span>
+</span><span id="matrix_pencil_method-20"><a href="#matrix_pencil_method-20"><span class="linenos">20</span></a><span class="sd">    p : int</span>
+</span><span id="matrix_pencil_method-21"><a href="#matrix_pencil_method-21"><span class="linenos">21</span></a><span class="sd">        matrix pencil parameter which filters noise. The optimal value is expected between</span>
+</span><span id="matrix_pencil_method-22"><a href="#matrix_pencil_method-22"><span class="linenos">22</span></a><span class="sd">        len(data)/3 and 2*len(data)/3. The computation is more expensive the closer p is</span>
+</span><span id="matrix_pencil_method-23"><a href="#matrix_pencil_method-23"><span class="linenos">23</span></a><span class="sd">        to len(data)/2 but could possibly suppress more noise (default len(data)//2).</span>
+</span><span id="matrix_pencil_method-24"><a href="#matrix_pencil_method-24"><span class="linenos">24</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="matrix_pencil_method-25"><a href="#matrix_pencil_method-25"><span class="linenos">25</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">corrs</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="matrix_pencil_method-26"><a href="#matrix_pencil_method-26"><span class="linenos">26</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="p">[</span><span class="n">corrs</span><span class="p">]</span>
+</span><span id="matrix_pencil_method-27"><a href="#matrix_pencil_method-27"><span class="linenos">27</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="matrix_pencil_method-28"><a href="#matrix_pencil_method-28"><span class="linenos">28</span></a>        <span class="n">data</span> <span class="o">=</span> <span class="n">corrs</span>
+</span><span id="matrix_pencil_method-29"><a href="#matrix_pencil_method-29"><span class="linenos">29</span></a>
+</span><span id="matrix_pencil_method-30"><a href="#matrix_pencil_method-30"><span class="linenos">30</span></a>    <span class="n">lengths</span> <span class="o">=</span> <span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">d</span><span class="p">)</span> <span class="k">for</span> <span class="n">d</span> <span class="ow">in</span> <span class="n">data</span><span class="p">]</span>
+</span><span id="matrix_pencil_method-31"><a href="#matrix_pencil_method-31"><span class="linenos">31</span></a>    <span class="k">if</span> <span class="n">lengths</span><span class="o">.</span><span class="n">count</span><span class="p">(</span><span class="n">lengths</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">lengths</span><span class="p">):</span>
+</span><span id="matrix_pencil_method-32"><a href="#matrix_pencil_method-32"><span class="linenos">32</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;All datasets have to have the same length.&#39;</span><span class="p">)</span>
+</span><span id="matrix_pencil_method-33"><a href="#matrix_pencil_method-33"><span class="linenos">33</span></a>
+</span><span id="matrix_pencil_method-34"><a href="#matrix_pencil_method-34"><span class="linenos">34</span></a>    <span class="n">data_sets</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="matrix_pencil_method-35"><a href="#matrix_pencil_method-35"><span class="linenos">35</span></a>    <span class="n">n_data</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="matrix_pencil_method-36"><a href="#matrix_pencil_method-36"><span class="linenos">36</span></a>
+</span><span id="matrix_pencil_method-37"><a href="#matrix_pencil_method-37"><span class="linenos">37</span></a>    <span class="k">if</span> <span class="n">p</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="matrix_pencil_method-38"><a href="#matrix_pencil_method-38"><span class="linenos">38</span></a>        <span class="n">p</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">n_data</span> <span class="o">//</span> <span class="mi">2</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
+</span><span id="matrix_pencil_method-39"><a href="#matrix_pencil_method-39"><span class="linenos">39</span></a>    <span class="k">if</span> <span class="n">n_data</span> <span class="o">&lt;=</span> <span class="n">p</span><span class="p">:</span>
+</span><span id="matrix_pencil_method-40"><a href="#matrix_pencil_method-40"><span class="linenos">40</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The pencil p has to be smaller than the number of data samples.&#39;</span><span class="p">)</span>
+</span><span id="matrix_pencil_method-41"><a href="#matrix_pencil_method-41"><span class="linenos">41</span></a>    <span class="k">if</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span> <span class="ow">or</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">&lt;</span> <span class="n">k</span><span class="p">:</span>
+</span><span id="matrix_pencil_method-42"><a href="#matrix_pencil_method-42"><span class="linenos">42</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Cannot extract&#39;</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="s1">&#39;energy levels with p=&#39;</span><span class="p">,</span> <span class="n">p</span><span class="p">,</span> <span class="s1">&#39;and N-p=&#39;</span><span class="p">,</span> <span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">)</span>
+</span><span id="matrix_pencil_method-43"><a href="#matrix_pencil_method-43"><span class="linenos">43</span></a>
+</span><span id="matrix_pencil_method-44"><a href="#matrix_pencil_method-44"><span class="linenos">44</span></a>    <span class="c1"># Construct the hankel matrices</span>
+</span><span id="matrix_pencil_method-45"><a href="#matrix_pencil_method-45"><span class="linenos">45</span></a>    <span class="n">matrix</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="matrix_pencil_method-46"><a href="#matrix_pencil_method-46"><span class="linenos">46</span></a>    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">data_sets</span><span class="p">):</span>
+</span><span id="matrix_pencil_method-47"><a href="#matrix_pencil_method-47"><span class="linenos">47</span></a>        <span class="n">matrix</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">scipy</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">hankel</span><span class="p">(</span><span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][:</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span><span class="p">],</span> <span class="n">data</span><span class="p">[</span><span class="n">n</span><span class="p">][</span><span class="n">n_data</span> <span class="o">-</span> <span class="n">p</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:]))</span>
+</span><span id="matrix_pencil_method-48"><a href="#matrix_pencil_method-48"><span class="linenos">48</span></a>    <span class="n">matrix</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">matrix</span><span class="p">)</span>
+</span><span id="matrix_pencil_method-49"><a href="#matrix_pencil_method-49"><span class="linenos">49</span></a>    <span class="c1"># Construct y1 and y2</span>
+</span><span id="matrix_pencil_method-50"><a href="#matrix_pencil_method-50"><span class="linenos">50</span></a>    <span class="n">y1</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="p">:</span><span class="n">p</span><span class="p">])</span>
+</span><span id="matrix_pencil_method-51"><a href="#matrix_pencil_method-51"><span class="linenos">51</span></a>    <span class="n">y2</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">matrix</span><span class="p">[:,</span> <span class="p">:,</span> <span class="mi">1</span><span class="p">:])</span>
+</span><span id="matrix_pencil_method-52"><a href="#matrix_pencil_method-52"><span class="linenos">52</span></a>    <span class="c1"># Apply SVD to y2</span>
+</span><span id="matrix_pencil_method-53"><a href="#matrix_pencil_method-53"><span class="linenos">53</span></a>    <span class="n">u</span><span class="p">,</span> <span class="n">s</span><span class="p">,</span> <span class="n">vh</span> <span class="o">=</span> <span class="n">svd</span><span class="p">(</span><span class="n">y2</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="matrix_pencil_method-54"><a href="#matrix_pencil_method-54"><span class="linenos">54</span></a>    <span class="c1"># Construct z from y1 and SVD of y2, setting all singular values beyond the kth to zero</span>
+</span><span id="matrix_pencil_method-55"><a href="#matrix_pencil_method-55"><span class="linenos">55</span></a>    <span class="n">z</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mf">1.</span> <span class="o">/</span> <span class="n">s</span><span class="p">[:</span><span class="n">k</span><span class="p">])</span> <span class="o">@</span> <span class="n">u</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span><span class="o">.</span><span class="n">T</span> <span class="o">@</span> <span class="n">y1</span> <span class="o">@</span> <span class="n">vh</span><span class="o">.</span><span class="n">T</span><span class="p">[:,</span> <span class="p">:</span><span class="n">k</span><span class="p">]</span>
+</span><span id="matrix_pencil_method-56"><a href="#matrix_pencil_method-56"><span class="linenos">56</span></a>    <span class="c1"># Return the sorted logarithms of the real eigenvalues as Obs</span>
+</span><span id="matrix_pencil_method-57"><a href="#matrix_pencil_method-57"><span class="linenos">57</span></a>    <span class="n">energy_levels</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">eig</span><span class="p">(</span><span class="n">z</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)))</span>
+</span><span id="matrix_pencil_method-58"><a href="#matrix_pencil_method-58"><span class="linenos">58</span></a>    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">energy_levels</span><span class="p">,</span> <span class="n">key</span><span class="o">=</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="nb">abs</span><span class="p">(</span><span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/obs.html b/docs/pyerrors/obs.html
index 8e648183..fd7268b8 100644
--- a/docs/pyerrors/obs.html
+++ b/docs/pyerrors/obs.html
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     <title>pyerrors.obs API documentation</title>
 
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@@ -294,7 +294,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
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@@ -309,1573 +309,1574 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">warnings</span>
-<span class="kn">import</span> <span class="nn">pickle</span>
-<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>  <span class="c1"># Thinly-wrapped numpy</span>
-<span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">jacobian</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
-<span class="kn">from</span> <span class="nn">scipy.stats</span> <span class="kn">import</span> <span class="n">skew</span><span class="p">,</span> <span class="n">skewtest</span><span class="p">,</span> <span class="n">kurtosis</span><span class="p">,</span> <span class="n">kurtosistest</span>
-<span class="kn">import</span> <span class="nn">numdifftools</span> <span class="k">as</span> <span class="nn">nd</span>
-<span class="kn">from</span> <span class="nn">itertools</span> <span class="kn">import</span> <span class="n">groupby</span>
-<span class="kn">from</span> <span class="nn">.covobs</span> <span class="kn">import</span> <span class="n">Covobs</span>
-
-
-<span class="k">class</span> <span class="nc">Obs</span><span class="p">:</span>
-    <span class="sd">&quot;&quot;&quot;Class for a general observable.</span>
-
-<span class="sd">    Instances of Obs are the basic objects of a pyerrors error analysis.</span>
-<span class="sd">    They are initialized with a list which contains arrays of samples for</span>
-<span class="sd">    different ensembles/replica and another list of same length which contains</span>
-<span class="sd">    the names of the ensembles/replica. Mathematical operations can be</span>
-<span class="sd">    performed on instances. The result is another instance of Obs. The error of</span>
-<span class="sd">    an instance can be computed with the gamma_method. Also contains additional</span>
-<span class="sd">    methods for output and visualization of the error calculation.</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    S_global : float</span>
-<span class="sd">        Standard value for S (default 2.0)</span>
-<span class="sd">    S_dict : dict</span>
-<span class="sd">        Dictionary for S values. If an entry for a given ensemble</span>
-<span class="sd">        exists this overwrites the standard value for that ensemble.</span>
-<span class="sd">    tau_exp_global : float</span>
-<span class="sd">        Standard value for tau_exp (default 0.0)</span>
-<span class="sd">    tau_exp_dict : dict</span>
-<span class="sd">        Dictionary for tau_exp values. If an entry for a given ensemble exists</span>
-<span class="sd">        this overwrites the standard value for that ensemble.</span>
-<span class="sd">    N_sigma_global : float</span>
-<span class="sd">        Standard value for N_sigma (default 1.0)</span>
-<span class="sd">    N_sigma_dict : dict</span>
-<span class="sd">        Dictionary for N_sigma values. If an entry for a given ensemble exists</span>
-<span class="sd">        this overwrites the standard value for that ensemble.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">,</span> <span class="s1">&#39;shape&#39;</span><span class="p">,</span> <span class="s1">&#39;r_values&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">,</span> <span class="s1">&#39;N&#39;</span><span class="p">,</span> <span class="s1">&#39;_value&#39;</span><span class="p">,</span> <span class="s1">&#39;_dvalue&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="s1">&#39;S&#39;</span><span class="p">,</span> <span class="s1">&#39;tau_exp&#39;</span><span class="p">,</span> <span class="s1">&#39;N_sigma&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;e_dvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_dtauint&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;e_windowsize&#39;</span><span class="p">,</span> <span class="s1">&#39;e_rho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_drho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_dtauint&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;idl&#39;</span><span class="p">,</span> <span class="s1">&#39;is_merged&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="s1">&#39;_covobs&#39;</span><span class="p">,</span> <span class="s1">&#39;__dict__&#39;</span><span class="p">]</span>
-
-    <span class="n">S_global</span> <span class="o">=</span> <span class="mf">2.0</span>
-    <span class="n">S_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">tau_exp_global</span> <span class="o">=</span> <span class="mf">0.0</span>
-    <span class="n">tau_exp_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">N_sigma_global</span> <span class="o">=</span> <span class="mf">1.0</span>
-    <span class="n">N_sigma_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">filter_eps</span> <span class="o">=</span> <span class="mf">1e-10</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize Obs object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        samples : list</span>
-<span class="sd">            list of numpy arrays containing the Monte Carlo samples</span>
-<span class="sd">        names : list</span>
-<span class="sd">            list of strings labeling the individual samples</span>
-<span class="sd">        idl : list, optional</span>
-<span class="sd">            list of ranges or lists on which the samples are defined</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of samples and names incompatible.&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of idl incompatible with samples and names.&#39;</span><span class="p">)</span>
-            <span class="n">name_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">name_length</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">name_length</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">)):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;names are not unique.&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">names</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">min</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">samples</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Samples have to have at least 5 entries.&#39;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)):</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
-                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
-                    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
-                    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted idx for idl[</span><span class="si">%s</span><span class="s2">]&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;incompatible type for idl[</span><span class="si">%s</span><span class="s1">].&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span><span class="p">,</span> <span class="n">mean</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">))):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible samples and idx for </span><span class="si">%s</span><span class="s1">: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">/=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">False</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">value</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_value</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">dvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">e_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">]))</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">cov_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">()]))</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">mc_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]))</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">e_content</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-            <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-                <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e_name</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">res</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">covobs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Estimate the error and related properties of the Obs.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        S : float</span>
-<span class="sd">            specifies a custom value for the parameter S (default 2.0).</span>
-<span class="sd">            If set to 0 it is assumed that the data exhibits no</span>
-<span class="sd">            autocorrelation. In this case the error estimates coincides</span>
-<span class="sd">            with the sample standard error.</span>
-<span class="sd">        tau_exp : float</span>
-<span class="sd">            positive value triggers the critical slowing down analysis</span>
-<span class="sd">            (default 0.0).</span>
-<span class="sd">        N_sigma : float</span>
-<span class="sd">            number of standard deviations from zero until the tail is</span>
-<span class="sd">            attached to the autocorrelation function (default 1).</span>
-<span class="sd">        fft : bool</span>
-<span class="sd">            determines whether the fft algorithm is used for the computation</span>
-<span class="sd">            of the autocorrelation function (default True)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">e_content</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_content</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">e_gamma</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mi">0</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">S</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span> <span class="o">=</span> <span class="p">{}</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;fft&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
-            <span class="n">fft</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">fft</span> <span class="o">=</span> <span class="kc">True</span>
-
-        <span class="k">def</span> <span class="nf">_parse_kwarg</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">kwarg_name</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-                    <span class="k">if</span> <span class="n">tmp</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; has to be larger or equal to 0.&#39;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; is not in proper format.&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">):</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_global&#39;</span><span class="p">)</span>
-
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;S&#39;</span><span class="p">)</span>
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;tau_exp&#39;</span><span class="p">)</span>
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;N_sigma&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]])</span>
-            <span class="n">w_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span>
-            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
-
-            <span class="n">gamma_div</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">gamma_div</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])),</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
-            <span class="n">gamma_div</span><span class="p">[</span><span class="n">gamma_div</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.0</span>
-            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/=</span> <span class="n">gamma_div</span><span class="p">[:</span><span class="n">w_max</span><span class="p">]</span>
-
-            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">tiny</span><span class="p">:</span>  <span class="c1"># Prevent division by zero</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">continue</span>
-
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">/</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(([</span><span class="mf">0.5</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:])))</span>
-            <span class="c1"># Make sure no entry of tauint is smaller than 0.5</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="mf">0.5</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span>
-            <span class="c1"># hep-lat/0306017 eq. (42)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-
-            <span class="k">def</span> <span class="nf">_compute_drho</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-                <span class="n">tmp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">i</span><span class="p">]])</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="n">i</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">tmp</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-
-            <span class="n">_compute_drho</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
-                <span class="c1"># Critical slowing down analysis</span>
-                <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">&lt;=</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Need at least 8 samples for tau_exp error analysis&quot;</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
-                    <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
-                        <span class="c1"># Bias correction hep-lat/0306017 eq. (49) included</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>  <span class="c1"># The absolute makes sure, that the tail contribution is always positive</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-                        <span class="c1"># Error of tau_exp neglected so far, missing term: self.e_rho[e_name][n + 1] ** 2 * d_tau_exp ** 2</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
-                        <span class="k">break</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="p">(</span><span class="n">e_N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="c1"># Standard automatic windowing procedure</span>
-                    <span class="n">tau</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">((</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="n">g_w</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">/</span> <span class="n">tau</span><span class="p">)</span> <span class="o">-</span> <span class="n">tau</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">*</span> <span class="n">e_N</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">):</span>
-                        <span class="k">if</span> <span class="n">n</span> <span class="o">&lt;</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
-                            <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-                        <span class="k">if</span> <span class="n">g_w</span><span class="p">[</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>  <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
-                            <span class="k">break</span>
-
-            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">**</span> <span class="mi">2</span>
-
-        <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">**</span><span class="mi">2</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">)</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-        <span class="k">return</span>
-
-    <span class="k">def</span> <span class="nf">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Calculate Gamma_{AA} from the deltas, which are defined on idx.</span>
-<span class="sd">           idx is assumed to be a contiguous range (possibly with a stepsize != 1)</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        deltas : list</span>
-<span class="sd">            List of fluctuations</span>
-<span class="sd">        idx : list</span>
-<span class="sd">            List or range of configurations on which the deltas are defined.</span>
-<span class="sd">        shape : int</span>
-<span class="sd">            Number of configurations in idx.</span>
-<span class="sd">        w_max : int</span>
-<span class="sd">            Upper bound for the summation window.</span>
-<span class="sd">        fft : bool</span>
-<span class="sd">            determines whether the fft algorithm is used for the computation</span>
-<span class="sd">            of the autocorrelation function.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">gamma</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-        <span class="n">deltas</span> <span class="o">=</span> <span class="n">_expand_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">)</span>
-        <span class="n">new_shape</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">fft</span><span class="p">:</span>
-            <span class="n">max_gamma</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">new_shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span>
-            <span class="c1"># The padding for the fft has to be even</span>
-            <span class="n">padding</span> <span class="o">=</span> <span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span><span class="p">)</span> <span class="o">%</span> <span class="mi">2</span>
-            <span class="n">gamma</span><span class="p">[:</span><span class="n">max_gamma</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">irfft</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">rfft</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">padding</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)[:</span><span class="n">max_gamma</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">w_max</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">gamma</span><span class="p">[</span><span class="n">n</span><span class="p">]</span> <span class="o">+=</span> <span class="n">deltas</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">:</span><span class="n">new_shape</span><span class="p">])</span>
-
-        <span class="k">return</span> <span class="n">gamma</span>
-
-    <span class="k">def</span> <span class="nf">details</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ens_content</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Output detailed properties of the Obs.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        ens_content : bool</span>
-<span class="sd">            print details about the ensembles and replica if true.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Description:&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">*</span> <span class="mi">100</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> (</span><span class="si">%3.3f%%</span><span class="s1">)&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">,</span> <span class="n">percentage</span><span class="p">))</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; Ensemble errors:&#39;</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> tau_exp = </span><span class="si">%3.2f</span><span class="s1">,  N_sigma = </span><span class="si">%1.0i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> S = </span><span class="si">%3.2f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-        <span class="k">if</span> <span class="n">ens_content</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensemble:&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensembles:&#39;</span><span class="p">)</span>
-            <span class="n">my_string_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">items</span><span class="p">()):</span>
-                <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
-                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Ensemble &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                        <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
-                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="nb">range</span><span class="p">):</span>
-                            <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
-                        <span class="k">else</span><span class="p">:</span>
-                            <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">sublist</span> <span class="o">=</span> <span class="p">[]</span>
-                        <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">value</span><span class="p">:</span>
-                            <span class="n">my_substring</span> <span class="o">=</span> <span class="s1">&#39;    &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Replicum &#39;&quot;</span> <span class="o">+</span> <span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                            <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
-                            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
-                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
-                            <span class="k">else</span><span class="p">:</span>
-                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
-                            <span class="n">sublist</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_substring</span><span class="p">)</span>
-
-                        <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sublist</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Covobs   &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                <span class="n">my_string_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_string</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">my_string_list</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">is_zero_within_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sigma</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within &#39;sigma&#39; standard errors.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        sigma : int</span>
-<span class="sd">            Number of standard errors used for the check.</span>
-
-<span class="sd">        Works only properly when the gamma method was run.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span> <span class="ow">or</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="n">sigma</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-
-    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-10</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within a given tolerance.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        atol : float</span>
-<span class="sd">            Absolute tolerance (for details see numpy documentation).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="o">.</span><span class="n">errsq</span><span class="p">(),</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
-
-    <span class="k">def</span> <span class="nf">plot_tauint</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot integrated autocorrelation time for each ensemble.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        save : str</span>
-<span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
-            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">base</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]]</span>
-                <span class="n">x_help</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
-                <span class="n">y_help</span> <span class="o">=</span> <span class="p">(</span><span class="n">x_help</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">x_help</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)))</span> <span class="o">+</span> <span class="n">base</span>
-                <span class="n">x_arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_arr</span><span class="p">,</span> <span class="n">y_help</span><span class="p">,</span> <span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
-                             <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
-                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, $\tau_\mathrm</span><span class="si">{exp}</span><span class="s1">$=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        save : str</span>
-<span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
-            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">length</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
-                         <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k-&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, tau\_exp=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No replica distribution for a single replicum (&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;)&#39;</span><span class="p">)</span>
-                <span class="k">continue</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">sub_r_mean</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-                <span class="n">sub_r_mean</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span>
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
-            <span class="n">sub_r_mean</span> <span class="o">/=</span> <span class="n">e_N</span>
-            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">arr</span><span class="p">[</span><span class="n">r</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="n">sub_r_mean</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_N</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">hist</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="n">rwidth</span><span class="o">=</span><span class="mf">0.8</span><span class="p">,</span> <span class="n">bins</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Replica distribution&#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39; (mean=0, var=1)&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">plot_history</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expand</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot derived Monte Carlo history for each ensemble</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        expand : bool</span>
-<span class="sd">            show expanded history for irregular Monte Carlo chains (default: True).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">tmp</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">tmp_expanded</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">tmp</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-                <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
-                    <span class="n">tmp_expanded</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_expand_deltas</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
-            <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">e_N</span><span class="p">)</span>
-            <span class="n">y_test</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
-                <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">y</span> <span class="o">=</span> <span class="n">y_test</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">e_N</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">skew: </span><span class="si">{</span><span class="n">skew</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">skewtest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">), kurtosis: </span><span class="si">{</span><span class="n">kurtosis</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">kurtosistest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">)&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">plot_piechart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot piechart which shows the fractional contribution of each</span>
-<span class="sd">        ensemble to the error and returns a dictionary containing the fractions.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error is 0.0&#39;</span><span class="p">)</span>
-        <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
-        <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">pie</span><span class="p">(</span><span class="n">sizes</span><span class="p">,</span> <span class="n">labels</span><span class="o">=</span><span class="n">labels</span><span class="p">,</span> <span class="n">startangle</span><span class="o">=</span><span class="mi">90</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">axis</span><span class="p">(</span><span class="s1">&#39;equal&#39;</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">,</span> <span class="n">sizes</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Dump the Obs to a file &#39;name&#39; of chosen format.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        filename : str</span>
-<span class="sd">            name of the file to be saved.</span>
-<span class="sd">        datatype : str</span>
-<span class="sd">            Format of the exported file. Supported formats include</span>
-<span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
-<span class="sd">        description : str</span>
-<span class="sd">            Description for output file, only relevant for json.gz format.</span>
-<span class="sd">        path : str</span>
-<span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
-
-        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
-            <span class="n">dump_to_json</span><span class="p">([</span><span class="bp">self</span><span class="p">],</span> <span class="n">file_name</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
-            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
-                <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Export jackknife samples from the Obs</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        numpy.ndarray</span>
-<span class="sd">            Returns a numpy array of length N + 1 where N is the number of samples</span>
-<span class="sd">            for the given ensemble and replicum. The zeroth entry of the array contains</span>
-<span class="sd">            the mean value of the Obs, entries 1 to N contain the N jackknife samples</span>
-<span class="sd">            derived from the Obs. The current implementation only works for observables</span>
-<span class="sd">            defined on exactly one ensemble and replicum. The derived jackknife samples</span>
-<span class="sd">            should agree with samples from a full jackknife analysis up to O(1/N).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;export_jackknife&#39; is only implemented for Obs defined on one ensemble and replicum.&quot;</span><span class="p">)</span>
-
-        <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-        <span class="n">n</span> <span class="o">=</span> <span class="n">full_data</span><span class="o">.</span><span class="n">size</span>
-        <span class="n">mean</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span>
-        <span class="n">tmp_jacks</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
-        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">mean</span> <span class="o">-</span> <span class="n">full_data</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">tmp_jacks</span>
-
-    <span class="k">def</span> <span class="fm">__float__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s1">&#39;Obs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-        <span class="n">fexp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">log10</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">))</span>
-        <span class="k">if</span> <span class="n">fexp</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s1">&#39;{:</span><span class="si">{form}</span><span class="s1">}(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">*</span> <span class="mi">10</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="n">fexp</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">form</span><span class="o">=</span><span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">fexp</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;f&#39;</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">fexp</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.1f}</span><span class="s1">(</span><span class="si">{:1.1f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.0f}</span><span class="s1">(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
-
-    <span class="c1"># Overload comparisons</span>
-    <span class="k">def</span> <span class="fm">__lt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__le__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;=</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__gt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__ge__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;=</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="fm">__ne__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="ow">not</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
-
-    <span class="c1"># Overload math operations</span>
-    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">+</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">*</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="nb">complex</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">-</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">y</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">/</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span> <span class="o">/</span> <span class="bp">self</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">y</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">y</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rpow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">y</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="c1"># Overload numpy functions</span>
-    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-
-<span class="k">class</span> <span class="nc">CObs</span><span class="p">:</span>
-    <span class="sd">&quot;&quot;&quot;Class for a complex valued observable.&quot;&quot;&quot;</span>
-    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;_real&#39;</span><span class="p">,</span> <span class="s1">&#39;_imag&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">]</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_real</span> <span class="o">=</span> <span class="n">real</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span> <span class="o">=</span> <span class="n">imag</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_real</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Executes the gamma_method for the real and the imaginary part.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether both real and imaginary part are zero within machine precision.&quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="mf">0.0</span>
-
-    <span class="k">def</span> <span class="nf">conjugate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">other</span> <span class="o">+</span> <span class="bp">self</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="n">other</span> <span class="o">-</span> <span class="bp">self</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">other</span> <span class="o">*</span> <span class="bp">self</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">]):</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
-                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
-                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">]),</span>
-                            <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
-                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
-                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">]))</span>
-            <span class="k">elif</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="n">other</span> <span class="o">/</span> <span class="bp">self</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="n">r</span> <span class="o">=</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">/</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">/</span> <span class="n">other</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="n">r</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">**</span><span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s1">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">&gt;=</span> <span class="mf">0.0</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;+&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;j)&#39;</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s1">&#39;CObs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
-
-
-<span class="k">def</span> <span class="nf">_expand_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Expand deltas defined on idx to a regular, contiguous range, where holes are filled by 0.</span>
-<span class="sd">       If idx is of type range, the deltas are not changed</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    deltas : list</span>
-<span class="sd">        List of fluctuations</span>
-<span class="sd">    idx : list</span>
-<span class="sd">        List or range of configs on which the deltas are defined, has to be sorted in ascending order.</span>
-<span class="sd">    shape : int</span>
-<span class="sd">        Number of configs in idx.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">deltas</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">ret</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">shape</span><span class="p">):</span>
-            <span class="n">ret</span><span class="p">[</span><span class="n">idx</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-        <span class="k">return</span> <span class="n">ret</span>
-
-
-<span class="k">def</span> <span class="nf">_merge_idx</span><span class="p">(</span><span class="n">idl</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Returns the union of all lists in idl as sorted list</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    idl : list</span>
-<span class="sd">        List of lists or ranges.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="c1"># Use groupby to efficiently check whether all elements of idl are identical</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">g</span> <span class="o">=</span> <span class="n">groupby</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">next</span><span class="p">(</span><span class="n">g</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">next</span><span class="p">(</span><span class="n">g</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">idl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
-        <span class="k">pass</span>
-
-    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">([</span><span class="nb">type</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">]):</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">idstart</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([</span><span class="n">idx</span><span class="o">.</span><span class="n">start</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">])</span>
-            <span class="n">idstop</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([</span><span class="n">idx</span><span class="o">.</span><span class="n">stop</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">])</span>
-            <span class="n">idstep</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([</span><span class="n">idx</span><span class="o">.</span><span class="n">step</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">])</span>
-            <span class="k">return</span> <span class="nb">range</span><span class="p">(</span><span class="n">idstart</span><span class="p">,</span> <span class="n">idstop</span><span class="p">,</span> <span class="n">idstep</span><span class="p">)</span>
-
-    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">()</span><span class="o">.</span><span class="n">union</span><span class="p">(</span><span class="o">*</span><span class="n">idl</span><span class="p">))</span>
-
-
-<span class="k">def</span> <span class="nf">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">new_idx</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Expand deltas defined on idx to the list of configs that is defined by new_idx.</span>
-<span class="sd">       New, empty entries are filled by 0. If idx and new_idx are of type range, the smallest</span>
-<span class="sd">       common divisor of the step sizes is used as new step size.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    deltas : list</span>
-<span class="sd">        List of fluctuations</span>
-<span class="sd">    idx : list</span>
-<span class="sd">        List or range of configs on which the deltas are defined.</span>
-<span class="sd">        Has to be a subset of new_idx and has to be sorted in ascending order.</span>
-<span class="sd">    shape : list</span>
-<span class="sd">        Number of configs in idx.</span>
-<span class="sd">    new_idx : list</span>
-<span class="sd">        List of configs that defines the new range, has to be sorted in ascending order.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">new_idx</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">idx</span> <span class="o">==</span> <span class="n">new_idx</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">deltas</span>
-    <span class="n">ret</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">new_idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">new_idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">shape</span><span class="p">):</span>
-        <span class="n">ret</span><span class="p">[</span><span class="n">idx</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">new_idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
-    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">ret</span><span class="p">[</span><span class="n">new_idx</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">new_idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">new_idx</span><span class="p">))])</span>
-
-
-<span class="k">def</span> <span class="nf">_filter_zeroes</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">eps</span><span class="o">=</span><span class="n">Obs</span><span class="o">.</span><span class="n">filter_eps</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Filter out all configurations with vanishing fluctuation such that they do not</span>
-<span class="sd">       contribute to the error estimate anymore. Returns the new deltas and</span>
-<span class="sd">       idx according to the filtering.</span>
-<span class="sd">       A fluctuation is considered to be vanishing, if it is smaller than eps times</span>
-<span class="sd">       the mean of the absolute values of all deltas in one list.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    deltas : list</span>
-<span class="sd">        List of fluctuations</span>
-<span class="sd">    idx : list</span>
-<span class="sd">        List or ranges of configs on which the deltas are defined.</span>
-<span class="sd">    eps : float</span>
-<span class="sd">        Prefactor that enters the filter criterion.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">new_deltas</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">new_idx</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">maxd</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">fabs</span><span class="p">(</span><span class="n">deltas</span><span class="p">))</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)):</span>
-        <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">&gt;</span> <span class="n">eps</span> <span class="o">*</span> <span class="n">maxd</span><span class="p">:</span>
-            <span class="n">new_deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-            <span class="n">new_idx</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
-    <span class="k">if</span> <span class="n">new_idx</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">new_deltas</span><span class="p">),</span> <span class="n">new_idx</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span>
-
-
-<span class="k">def</span> <span class="nf">derived_observable</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Construct a derived Obs according to func(data, **kwargs) using automatic differentiation.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    func : object</span>
-<span class="sd">        arbitrary function of the form func(data, **kwargs). For the</span>
-<span class="sd">        automatic differentiation to work, all numpy functions have to have</span>
-<span class="sd">        the autograd wrapper (use &#39;import autograd.numpy as anp&#39;).</span>
-<span class="sd">    data : list</span>
-<span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
-<span class="sd">    num_grad : bool</span>
-<span class="sd">        if True, numerical derivatives are used instead of autograd</span>
-<span class="sd">        (default False). To control the numerical differentiation the</span>
-<span class="sd">        kwargs of numdifftools.step_generators.MaxStepGenerator</span>
-<span class="sd">        can be used.</span>
-<span class="sd">    man_grad : list</span>
-<span class="sd">        manually supply a list or an array which contains the jacobian</span>
-<span class="sd">        of func. Use cautiously, supplying the wrong derivative will</span>
-<span class="sd">        not be intercepted.</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    For simple mathematical operations it can be practical to use anonymous</span>
-<span class="sd">    functions. For the ratio of two observables one can e.g. use</span>
-
-<span class="sd">    new_obs = derived_observable(lambda x: x[0] / x[1], [obs1, obs2])</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-    <span class="n">raveled_data</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">ravel</span><span class="p">()</span>
-
-    <span class="c1"># Workaround for matrix operations containing non Obs data</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">):</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-                <span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">cov_Obs</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">0.0</span><span class="p">,</span> <span class="s2">&quot;###dummy_covobs###&quot;</span><span class="p">)</span>
-
-    <span class="n">allcov</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">allcov</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Inconsistent covariance matrices for </span><span class="si">%s</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span>
-
-    <span class="n">n_obs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)</span>
-    <span class="n">new_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
-    <span class="n">new_cov_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
-    <span class="n">new_sample_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_cov_names</span><span class="p">))</span>
-
-    <span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">}</span>
-    <span class="n">reweighted</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span>
-
-    <span class="k">if</span> <span class="n">data</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data</span><span class="p">])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">data</span><span class="p">)</span>
-
-    <span class="n">new_values</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="n">multi</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">new_values</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">))</span>
-
-    <span class="n">new_r_values</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">new_idl_d</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n_obs</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">):</span>
-            <span class="n">tmp_values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">item</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-            <span class="n">tmp_idl</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">tmp_idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_idl</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-        <span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-            <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="p">[</span><span class="o">*</span><span class="n">idl</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]]])))</span>
-
-    <span class="k">if</span> <span class="s1">&#39;man_grad&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;man_grad&#39;</span><span class="p">))</span>
-        <span class="k">if</span> <span class="n">new_values</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">data</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">deriv</span><span class="o">.</span><span class="n">shape</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Manual derivative does not have correct shape.&#39;</span><span class="p">)</span>
-    <span class="k">elif</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;num_grad&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Multi mode currently not supported for numerical derivative&#39;</span><span class="p">)</span>
-        <span class="n">options</span> <span class="o">=</span> <span class="p">{</span>
-            <span class="s1">&#39;base_step&#39;</span><span class="p">:</span> <span class="mf">0.1</span><span class="p">,</span>
-            <span class="s1">&#39;step_ratio&#39;</span><span class="p">:</span> <span class="mf">2.5</span><span class="p">}</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">kwarg</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">kwarg</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">options</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">kwarg</span>
-        <span class="n">tmp_df</span> <span class="o">=</span> <span class="n">nd</span><span class="o">.</span><span class="n">Gradient</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="o">**</span><span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> <span class="k">if</span> <span class="n">v</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">})(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">size</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">deriv</span> <span class="o">=</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">deriv</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="n">final_result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">new_values</span><span class="o">.</span><span class="n">shape</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-
-        <span class="k">class</span> <span class="nc">_Zero_grad</span><span class="p">():</span>
-            <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-
-        <span class="n">new_covobs_lengths</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[[(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
-        <span class="n">d_extracted</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">g_extracted</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
-            <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
-                <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)),</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]),</span> <span class="n">o</span><span class="o">.</span><span class="n">shape</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">ens_length</span><span class="p">),</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">ens_length</span><span class="p">,</span> <span class="p">)))</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
-            <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">zero_grad</span> <span class="o">=</span> <span class="n">_Zero_grad</span><span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
-                <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">zero_grad</span><span class="p">)</span><span class="o">.</span><span class="n">grad</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="mi">1</span><span class="p">)))</span>
-
-    <span class="k">for</span> <span class="n">i_val</span><span class="p">,</span> <span class="n">new_val</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">new_values</span><span class="p">):</span>
-        <span class="n">new_deltas</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">new_grad</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
-                <span class="n">ens_length</span> <span class="o">=</span> <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-                <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
-                    <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
-                <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
-                    <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">j_obs</span><span class="p">,</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-                        <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_grad</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">obs</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-
-        <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_grad</span><span class="p">}</span>
-
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="n">new_deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The same name has been used for deltas and covobs!&#39;</span><span class="p">)</span>
-        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">new_means</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">new_names_obs</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-                    <span class="n">filtered_deltas</span><span class="p">,</span> <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">_filter_zeroes</span><span class="p">(</span><span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">filtered_deltas</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                    <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-
-                <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_deltas</span><span class="p">)</span>
-                <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_idl_d</span><span class="p">)</span>
-                <span class="n">new_means</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i_val</span><span class="p">])</span>
-                <span class="n">new_names_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="n">new_names_obs</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="n">new_means</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
-            <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">new_val</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">is_merged</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">reweighted</span>
-
-    <span class="k">if</span> <span class="n">multi</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">final_result</span> <span class="o">=</span> <span class="n">final_result</span><span class="o">.</span><span class="n">item</span><span class="p">()</span>
-
-    <span class="k">return</span> <span class="n">final_result</span>
-
-
-<span class="k">def</span> <span class="nf">_reduce_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx_old</span><span class="p">,</span> <span class="n">idx_new</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Extract deltas defined on idx_old on all configs of idx_new.</span>
-
-<span class="sd">    Assumes, that idx_old and idx_new are correctly defined idl, i.e., they</span>
-<span class="sd">    are ordered in an ascending order.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    deltas : list</span>
-<span class="sd">        List of fluctuations</span>
-<span class="sd">    idx_old : list</span>
-<span class="sd">        List or range of configs on which the deltas are defined</span>
-<span class="sd">    idx_new : list</span>
-<span class="sd">        List of configs for which we want to extract the deltas.</span>
-<span class="sd">        Has to be a subset of idx_old.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of deltas and idx_old have to be the same: </span><span class="si">%d</span><span class="s1"> != </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)))</span>
-    <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx_new</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">idx_old</span> <span class="o">==</span> <span class="n">idx_new</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">deltas</span>
-    <span class="n">shape</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_new</span><span class="p">)</span>
-    <span class="n">ret</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">shape</span><span class="p">)</span>
-    <span class="n">oldpos</span> <span class="o">=</span> <span class="mi">0</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">shape</span><span class="p">):</span>
-        <span class="n">pos</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
-        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">oldpos</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="n">idx_old</span><span class="p">[</span><span class="n">j</span><span class="p">]</span> <span class="o">==</span> <span class="n">idx_new</span><span class="p">[</span><span class="n">i</span><span class="p">]:</span>
-                <span class="n">pos</span> <span class="o">=</span> <span class="n">j</span>
-                <span class="k">break</span>
-        <span class="k">if</span> <span class="n">pos</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error in _reduce_deltas: Config </span><span class="si">%d</span><span class="s1"> not in idx_old&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">idx_new</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
-        <span class="n">ret</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">deltas</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span>
-        <span class="n">oldpos</span> <span class="o">=</span> <span class="n">pos</span>
-    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">ret</span><span class="p">)</span>
-
-
-<span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reweight a list of observables.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    weight : Obs</span>
-<span class="sd">        Reweighting factor. An Observable that has to be defined on a superset of the</span>
-<span class="sd">        configurations in obs[i].idl for all i.</span>
-<span class="sd">    obs : list</span>
-<span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
-<span class="sd">    all_configs : bool</span>
-<span class="sd">        if True, the reweighted observables are normalized by the average of</span>
-<span class="sd">        the reweighting factor on all configurations in weight.idl and not</span>
-<span class="sd">        on the configurations in obs[i].idl.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)):</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to reweight an Obs that contains covobs!&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Ensembles do not fit&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
-        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">w_deltas</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-            <span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_reduce_deltas</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
-        <span class="n">tmp_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;all_configs&#39;</span><span class="p">):</span>
-            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">weight</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)],</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
-
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">tmp_obs</span><span class="p">,</span> <span class="n">new_weight</span><span class="p">],</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">))</span>
-        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-
-
-<span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="n">obs_a</span><span class="p">,</span> <span class="n">obs_b</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Correlate two observables.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    obs_a : Obs</span>
-<span class="sd">        First observable</span>
-<span class="sd">    obs_b : Obs</span>
-<span class="sd">        Second observable</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    Keep in mind to only correlate primary observables which have not been reweighted</span>
-<span class="sd">    yet. The reweighting has to be applied after correlating the observables.</span>
-<span class="sd">    Currently only works if ensembles are identical (this is not strictly necessary).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Ensembles do not fit&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to correlate Obs that contain covobs!&#39;</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Shapes of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;idl of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The first observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The second observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-        <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">obs_a</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
-        <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-
-    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">))</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span>
-    <span class="k">return</span> <span class="n">o</span>
-
-
-<span class="k">def</span> <span class="nf">covariance</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="n">visualize</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">correlation</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Calculates the covariance matrix of a set of observables.</span>
-
-<span class="sd">    The gamma method has to be applied first to all observables.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    obs : list or numpy.ndarray</span>
-<span class="sd">        List or one dimensional array of Obs</span>
-<span class="sd">    visualize : bool</span>
-<span class="sd">        If True plots the corresponding normalized correlation matrix (default False).</span>
-<span class="sd">    correlation : bool</span>
-<span class="sd">        If True the correlation instead of the covariance is returned (default False).</span>
-<span class="sd">    smooth : None or int</span>
-<span class="sd">        If smooth is an integer &#39;E&#39; between 2 and the dimension of the matrix minus 1 the eigenvalue</span>
-<span class="sd">        smoothing procedure of hep-lat/9412087 is applied to the correlation matrix which leaves the</span>
-<span class="sd">        largest E eigenvalues essentially unchanged and smoothes the smaller eigenvalues to avoid extremely</span>
-<span class="sd">        small ones.</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    The covariance is estimated by calculating the correlation matrix assuming no autocorrelation and then rescaling the correlation matrix by the full errors including the previous gamma method estimate for the autocorrelation of the observables. The covariance at windowsize 0 is guaranteed to be positive semi-definite</span>
-<span class="sd">    $$v_i\Gamma_{ij}(0)v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i,j}v_i\delta_i^s\delta_j^s v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i}|v_i\delta_i^s|^2\geq 0\,,$$ for every $v\in\mathbb{R}^M$, while such an identity does not hold for larger windows/lags.</span>
-<span class="sd">    For observables defined on a single ensemble our approximation is equivalent to assuming that the integrated autocorrelation time of an off-diagonal element is equal to the geometric mean of the integrated autocorrelation times of the corresponding diagonal elements.</span>
-<span class="sd">    $$\tau_{\mathrm{int}, ij}=\sqrt{\tau_{\mathrm{int}, i}\times \tau_{\mathrm{int}, j}}$$</span>
-<span class="sd">    This construction ensures that the estimated covariance matrix is positive semi-definite (up to numerical rounding errors).</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-
-    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
-
-    <span class="n">max_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">])</span>
-    <span class="k">if</span> <span class="n">max_samples</span> <span class="o">&lt;=</span> <span class="n">length</span> <span class="ow">and</span> <span class="ow">not</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]:</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;The dimension of the covariance matrix (</span><span class="si">{</span><span class="n">length</span><span class="si">}</span><span class="s2">) is larger or equal to the number of samples (</span><span class="si">{</span><span class="n">max_samples</span><span class="si">}</span><span class="s2">). This will result in a rank deficient matrix.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">length</span><span class="p">):</span>
-        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">length</span><span class="p">):</span>
-            <span class="n">cov</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">_covariance_element</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">j</span><span class="p">])</span>
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">cov</span> <span class="o">+</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">))</span>
-
-    <span class="n">corr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span>
-
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">smooth</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
-        <span class="n">corr</span> <span class="o">=</span> <span class="n">_smooth_eigenvalues</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">smooth</span><span class="p">)</span>
-
-    <span class="n">errors</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span>
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span> <span class="o">@</span> <span class="n">corr</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span>
-
-    <span class="n">eigenvalues</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">cov</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">eigenvalues</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not positive semi-definite (Eigenvalues: &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">eigenvalues</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;)&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">visualize</span><span class="p">:</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">matshow</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">1</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">set_cmap</span><span class="p">(</span><span class="s1">&#39;RdBu&#39;</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">()</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">if</span> <span class="n">correlation</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">corr</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">cov</span>
-
-
-<span class="k">def</span> <span class="nf">_smooth_eigenvalues</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">E</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Eigenvalue smoothing as described in hep-lat/9412087</span>
-
-<span class="sd">    corr : np.ndarray</span>
-<span class="sd">        correlation matrix</span>
-<span class="sd">    E : integer</span>
-<span class="sd">        Number of eigenvalues to be left substantially unchanged</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">2</span> <span class="o">&lt;</span> <span class="n">E</span> <span class="o">&lt;</span> <span class="n">corr</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;&#39;E&#39; has to be between 2 and the dimension of the correlation matrix minus 1 (</span><span class="si">{</span><span class="n">corr</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="si">}</span><span class="s2">).&quot;</span><span class="p">)</span>
-    <span class="n">vals</span><span class="p">,</span> <span class="n">vec</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
-    <span class="n">lambda_min</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">vals</span><span class="p">[:</span><span class="o">-</span><span class="n">E</span><span class="p">])</span>
-    <span class="n">vals</span><span class="p">[</span><span class="n">vals</span> <span class="o">&lt;</span> <span class="n">lambda_min</span><span class="p">]</span> <span class="o">=</span> <span class="n">lambda_min</span>
-    <span class="n">vals</span> <span class="o">/=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">vals</span><span class="p">)</span>
-    <span class="k">return</span> <span class="n">vec</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">vals</span><span class="p">)</span> <span class="o">@</span> <span class="n">vec</span><span class="o">.</span><span class="n">T</span>
-
-
-<span class="k">def</span> <span class="nf">_covariance_element</span><span class="p">(</span><span class="n">obs1</span><span class="p">,</span> <span class="n">obs2</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Estimates the covariance of two Obs objects, neglecting autocorrelations.&quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">calc_gamma</span><span class="p">(</span><span class="n">deltas1</span><span class="p">,</span> <span class="n">deltas2</span><span class="p">,</span> <span class="n">idx1</span><span class="p">,</span> <span class="n">idx2</span><span class="p">,</span> <span class="n">new_idx</span><span class="p">):</span>
-        <span class="n">deltas1</span> <span class="o">=</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">deltas1</span><span class="p">,</span> <span class="n">idx1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx1</span><span class="p">),</span> <span class="n">new_idx</span><span class="p">)</span>
-        <span class="n">deltas2</span> <span class="o">=</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">deltas2</span><span class="p">,</span> <span class="n">idx2</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx2</span><span class="p">),</span> <span class="n">new_idx</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">deltas1</span> <span class="o">*</span> <span class="n">deltas2</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">obs2</span><span class="o">.</span><span class="n">names</span><span class="p">)):</span>
-        <span class="k">return</span> <span class="mf">0.0</span>
-
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs1</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">)</span> <span class="ow">or</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs2</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The gamma method has to be applied to both Obs first.&#39;</span><span class="p">)</span>
-
-    <span class="n">dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-
-    <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
-
-        <span class="k">if</span> <span class="n">e_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
-            <span class="k">continue</span>
-
-        <span class="n">idl_d</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-            <span class="k">if</span> <span class="n">r_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="k">continue</span>
-            <span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">([</span><span class="n">obs1</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]])</span>
-
-        <span class="n">gamma</span> <span class="o">=</span> <span class="mf">0.0</span>
-
-        <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-            <span class="k">if</span> <span class="n">r_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="k">continue</span>
-            <span class="n">gamma</span> <span class="o">+=</span> <span class="n">calc_gamma</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs1</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-
-        <span class="k">if</span> <span class="n">gamma</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="k">continue</span>
-
-        <span class="n">gamma_div</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="n">e_N</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-            <span class="k">if</span> <span class="n">r_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="k">continue</span>
-            <span class="n">gamma_div</span> <span class="o">+=</span> <span class="n">calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">obs2</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="n">obs1</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-            <span class="n">e_N</span> <span class="o">+=</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-        <span class="n">gamma</span> <span class="o">/=</span> <span class="nb">max</span><span class="p">(</span><span class="n">gamma_div</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">)</span>
-
-        <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
-        <span class="n">dvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">*</span> <span class="n">gamma</span> <span class="o">/</span> <span class="n">e_N</span>
-
-    <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-
-        <span class="k">if</span> <span class="n">e_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="k">continue</span>
-
-        <span class="n">dvalue</span> <span class="o">+=</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="n">obs2</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
-
-    <span class="k">return</span> <span class="n">dvalue</span>
-
-
-<span class="k">def</span> <span class="nf">import_jackknife</span><span class="p">(</span><span class="n">jacks</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Imports jackknife samples and returns an Obs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    jacks : numpy.ndarray</span>
-<span class="sd">        numpy array containing the mean value as zeroth entry and</span>
-<span class="sd">        the N jackknife samples as first to Nth entry.</span>
-<span class="sd">    name : str</span>
-<span class="sd">        name of the ensemble the samples are defined on.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">jacks</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span>
-    <span class="n">prj</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span> <span class="o">-</span> <span class="p">(</span><span class="n">length</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">length</span><span class="p">))</span>
-    <span class="n">samples</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">@</span> <span class="n">prj</span>
-    <span class="n">mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span>
-    <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">samples</span> <span class="o">-</span> <span class="n">mean</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="p">[</span><span class="n">mean</span><span class="p">])</span>
-    <span class="n">new_obs</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">return</span> <span class="n">new_obs</span>
-
-
-<span class="k">def</span> <span class="nf">merge_obs</span><span class="p">(</span><span class="n">list_of_obs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Combine all observables in list_of_obs into one new observable</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    list_of_obs : list</span>
-<span class="sd">        list of the Obs object to be combined</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    It is not possible to combine obs which are based on the same replicum</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">replist</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">list_of_obs</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">]</span>
-    <span class="k">if</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">replist</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
-    <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">]):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Not possible to merge data that contains covobs!&#39;</span><span class="p">)</span>
-    <span class="n">new_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">idl_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">:</span>
-        <span class="n">new_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-                        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)</span> <span class="o">|</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">)})</span>
-        <span class="n">idl_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)})</span>
-
-    <span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">new_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
-    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">new_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">],</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">])</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">reweighted</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span>
-    <span class="k">return</span> <span class="n">o</span>
-
-
-<span class="k">def</span> <span class="nf">cov_Obs</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Create an Obs based on mean(s) and a covariance matrix</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    mean : list of floats or float</span>
-<span class="sd">        N mean value(s) of the new Obs</span>
-<span class="sd">    cov : list or array</span>
-<span class="sd">        2d (NxN) Covariance matrix, 1d diagonal entries or 0d covariance</span>
-<span class="sd">    name : str</span>
-<span class="sd">        identifier for the covariance matrix</span>
-<span class="sd">    grad : list or array</span>
-<span class="sd">        Gradient of the Covobs wrt. the means belonging to cov.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">covobs_to_obs</span><span class="p">(</span><span class="n">co</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Make an Obs out of a Covobs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        co : Covobs</span>
-<span class="sd">            Covobs to be embedded into the Obs</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[])</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">co</span><span class="o">.</span><span class="n">value</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
-        <span class="k">return</span> <span class="n">o</span>
-
-    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">)):</span>
-        <span class="n">means</span> <span class="o">=</span> <span class="p">[</span><span class="n">means</span><span class="p">]</span>
-
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)):</span>
-        <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">covobs_to_obs</span><span class="p">(</span><span class="n">Covobs</span><span class="p">(</span><span class="n">means</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="n">i</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">grad</span><span class="p">)))</span>
-    <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You have to provide </span><span class="si">%d</span><span class="s1"> mean values!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">return</span> <span class="n">ol</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">   0</span></a><span class="kn">import</span> <span class="nn">warnings</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos">   1</span></a><span class="kn">import</span> <span class="nn">pickle</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos">   2</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos">   3</span></a><span class="kn">import</span> <span class="nn">autograd.numpy</span> <span class="k">as</span> <span class="nn">anp</span>  <span class="c1"># Thinly-wrapped numpy</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos">   4</span></a><span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">jacobian</span>
+</span><span id="L-5"><a href="#L-5"><span class="linenos">   5</span></a><span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
+</span><span id="L-6"><a href="#L-6"><span class="linenos">   6</span></a><span class="kn">from</span> <span class="nn">scipy.stats</span> <span class="kn">import</span> <span class="n">skew</span><span class="p">,</span> <span class="n">skewtest</span><span class="p">,</span> <span class="n">kurtosis</span><span class="p">,</span> <span class="n">kurtosistest</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos">   7</span></a><span class="kn">import</span> <span class="nn">numdifftools</span> <span class="k">as</span> <span class="nn">nd</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos">   8</span></a><span class="kn">from</span> <span class="nn">itertools</span> <span class="kn">import</span> <span class="n">groupby</span>
+</span><span id="L-9"><a href="#L-9"><span class="linenos">   9</span></a><span class="kn">from</span> <span class="nn">.covobs</span> <span class="kn">import</span> <span class="n">Covobs</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos">  10</span></a>
+</span><span id="L-11"><a href="#L-11"><span class="linenos">  11</span></a>
+</span><span id="L-12"><a href="#L-12"><span class="linenos">  12</span></a><span class="k">class</span> <span class="nc">Obs</span><span class="p">:</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos">  13</span></a>    <span class="sd">&quot;&quot;&quot;Class for a general observable.</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos">  14</span></a>
+</span><span id="L-15"><a href="#L-15"><span class="linenos">  15</span></a><span class="sd">    Instances of Obs are the basic objects of a pyerrors error analysis.</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos">  16</span></a><span class="sd">    They are initialized with a list which contains arrays of samples for</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos">  17</span></a><span class="sd">    different ensembles/replica and another list of same length which contains</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos">  18</span></a><span class="sd">    the names of the ensembles/replica. Mathematical operations can be</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos">  19</span></a><span class="sd">    performed on instances. The result is another instance of Obs. The error of</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos">  20</span></a><span class="sd">    an instance can be computed with the gamma_method. Also contains additional</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos">  21</span></a><span class="sd">    methods for output and visualization of the error calculation.</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos">  22</span></a>
+</span><span id="L-23"><a href="#L-23"><span class="linenos">  23</span></a><span class="sd">    Attributes</span>
+</span><span id="L-24"><a href="#L-24"><span class="linenos">  24</span></a><span class="sd">    ----------</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos">  25</span></a><span class="sd">    S_global : float</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos">  26</span></a><span class="sd">        Standard value for S (default 2.0)</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos">  27</span></a><span class="sd">    S_dict : dict</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos">  28</span></a><span class="sd">        Dictionary for S values. If an entry for a given ensemble</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos">  29</span></a><span class="sd">        exists this overwrites the standard value for that ensemble.</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos">  30</span></a><span class="sd">    tau_exp_global : float</span>
+</span><span id="L-31"><a href="#L-31"><span class="linenos">  31</span></a><span class="sd">        Standard value for tau_exp (default 0.0)</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos">  32</span></a><span class="sd">    tau_exp_dict : dict</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos">  33</span></a><span class="sd">        Dictionary for tau_exp values. If an entry for a given ensemble exists</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos">  34</span></a><span class="sd">        this overwrites the standard value for that ensemble.</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos">  35</span></a><span class="sd">    N_sigma_global : float</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos">  36</span></a><span class="sd">        Standard value for N_sigma (default 1.0)</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos">  37</span></a><span class="sd">    N_sigma_dict : dict</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos">  38</span></a><span class="sd">        Dictionary for N_sigma values. If an entry for a given ensemble exists</span>
+</span><span id="L-39"><a href="#L-39"><span class="linenos">  39</span></a><span class="sd">        this overwrites the standard value for that ensemble.</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos">  40</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-41"><a href="#L-41"><span class="linenos">  41</span></a>    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">,</span> <span class="s1">&#39;shape&#39;</span><span class="p">,</span> <span class="s1">&#39;r_values&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">,</span> <span class="s1">&#39;N&#39;</span><span class="p">,</span> <span class="s1">&#39;_value&#39;</span><span class="p">,</span> <span class="s1">&#39;_dvalue&#39;</span><span class="p">,</span>
+</span><span id="L-42"><a href="#L-42"><span class="linenos">  42</span></a>                 <span class="s1">&#39;ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="s1">&#39;S&#39;</span><span class="p">,</span> <span class="s1">&#39;tau_exp&#39;</span><span class="p">,</span> <span class="s1">&#39;N_sigma&#39;</span><span class="p">,</span>
+</span><span id="L-43"><a href="#L-43"><span class="linenos">  43</span></a>                 <span class="s1">&#39;e_dvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_dtauint&#39;</span><span class="p">,</span>
+</span><span id="L-44"><a href="#L-44"><span class="linenos">  44</span></a>                 <span class="s1">&#39;e_windowsize&#39;</span><span class="p">,</span> <span class="s1">&#39;e_rho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_drho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_dtauint&#39;</span><span class="p">,</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos">  45</span></a>                 <span class="s1">&#39;idl&#39;</span><span class="p">,</span> <span class="s1">&#39;is_merged&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="s1">&#39;_covobs&#39;</span><span class="p">,</span> <span class="s1">&#39;__dict__&#39;</span><span class="p">]</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos">  46</span></a>
+</span><span id="L-47"><a href="#L-47"><span class="linenos">  47</span></a>    <span class="n">S_global</span> <span class="o">=</span> <span class="mf">2.0</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos">  48</span></a>    <span class="n">S_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-49"><a href="#L-49"><span class="linenos">  49</span></a>    <span class="n">tau_exp_global</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos">  50</span></a>    <span class="n">tau_exp_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-51"><a href="#L-51"><span class="linenos">  51</span></a>    <span class="n">N_sigma_global</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="L-52"><a href="#L-52"><span class="linenos">  52</span></a>    <span class="n">N_sigma_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-53"><a href="#L-53"><span class="linenos">  53</span></a>    <span class="n">filter_eps</span> <span class="o">=</span> <span class="mf">1e-10</span>
+</span><span id="L-54"><a href="#L-54"><span class="linenos">  54</span></a>
+</span><span id="L-55"><a href="#L-55"><span class="linenos">  55</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-56"><a href="#L-56"><span class="linenos">  56</span></a>        <span class="sd">&quot;&quot;&quot; Initialize Obs object.</span>
+</span><span id="L-57"><a href="#L-57"><span class="linenos">  57</span></a>
+</span><span id="L-58"><a href="#L-58"><span class="linenos">  58</span></a><span class="sd">        Parameters</span>
+</span><span id="L-59"><a href="#L-59"><span class="linenos">  59</span></a><span class="sd">        ----------</span>
+</span><span id="L-60"><a href="#L-60"><span class="linenos">  60</span></a><span class="sd">        samples : list</span>
+</span><span id="L-61"><a href="#L-61"><span class="linenos">  61</span></a><span class="sd">            list of numpy arrays containing the Monte Carlo samples</span>
+</span><span id="L-62"><a href="#L-62"><span class="linenos">  62</span></a><span class="sd">        names : list</span>
+</span><span id="L-63"><a href="#L-63"><span class="linenos">  63</span></a><span class="sd">            list of strings labeling the individual samples</span>
+</span><span id="L-64"><a href="#L-64"><span class="linenos">  64</span></a><span class="sd">        idl : list, optional</span>
+</span><span id="L-65"><a href="#L-65"><span class="linenos">  65</span></a><span class="sd">            list of ranges or lists on which the samples are defined</span>
+</span><span id="L-66"><a href="#L-66"><span class="linenos">  66</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-67"><a href="#L-67"><span class="linenos">  67</span></a>
+</span><span id="L-68"><a href="#L-68"><span class="linenos">  68</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
+</span><span id="L-69"><a href="#L-69"><span class="linenos">  69</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
+</span><span id="L-70"><a href="#L-70"><span class="linenos">  70</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of samples and names incompatible.&#39;</span><span class="p">)</span>
+</span><span id="L-71"><a href="#L-71"><span class="linenos">  71</span></a>            <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-72"><a href="#L-72"><span class="linenos">  72</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
+</span><span id="L-73"><a href="#L-73"><span class="linenos">  73</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of idl incompatible with samples and names.&#39;</span><span class="p">)</span>
+</span><span id="L-74"><a href="#L-74"><span class="linenos">  74</span></a>            <span class="n">name_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
+</span><span id="L-75"><a href="#L-75"><span class="linenos">  75</span></a>            <span class="k">if</span> <span class="n">name_length</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-76"><a href="#L-76"><span class="linenos">  76</span></a>                <span class="k">if</span> <span class="n">name_length</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">)):</span>
+</span><span id="L-77"><a href="#L-77"><span class="linenos">  77</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;names are not unique.&#39;</span><span class="p">)</span>
+</span><span id="L-78"><a href="#L-78"><span class="linenos">  78</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">names</span><span class="p">):</span>
+</span><span id="L-79"><a href="#L-79"><span class="linenos">  79</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
+</span><span id="L-80"><a href="#L-80"><span class="linenos">  80</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-81"><a href="#L-81"><span class="linenos">  81</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="L-82"><a href="#L-82"><span class="linenos">  82</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
+</span><span id="L-83"><a href="#L-83"><span class="linenos">  83</span></a>            <span class="k">if</span> <span class="nb">min</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">samples</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="L-84"><a href="#L-84"><span class="linenos">  84</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Samples have to have at least 5 entries.&#39;</span><span class="p">)</span>
+</span><span id="L-85"><a href="#L-85"><span class="linenos">  85</span></a>
+</span><span id="L-86"><a href="#L-86"><span class="linenos">  86</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
+</span><span id="L-87"><a href="#L-87"><span class="linenos">  87</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-88"><a href="#L-88"><span class="linenos">  88</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-89"><a href="#L-89"><span class="linenos">  89</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-90"><a href="#L-90"><span class="linenos">  90</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-91"><a href="#L-91"><span class="linenos">  91</span></a>
+</span><span id="L-92"><a href="#L-92"><span class="linenos">  92</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-93"><a href="#L-93"><span class="linenos">  93</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-94"><a href="#L-94"><span class="linenos">  94</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-95"><a href="#L-95"><span class="linenos">  95</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-96"><a href="#L-96"><span class="linenos">  96</span></a>        <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-97"><a href="#L-97"><span class="linenos">  97</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)):</span>
+</span><span id="L-98"><a href="#L-98"><span class="linenos">  98</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="L-99"><a href="#L-99"><span class="linenos">  99</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
+</span><span id="L-100"><a href="#L-100"><span class="linenos"> 100</span></a>                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
+</span><span id="L-101"><a href="#L-101"><span class="linenos"> 101</span></a>                    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
+</span><span id="L-102"><a href="#L-102"><span class="linenos"> 102</span></a>                    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="L-103"><a href="#L-103"><span class="linenos"> 103</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted idx for idl[</span><span class="si">%s</span><span class="s2">]&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="L-104"><a href="#L-104"><span class="linenos"> 104</span></a>                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-105"><a href="#L-105"><span class="linenos"> 105</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-106"><a href="#L-106"><span class="linenos"> 106</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-107"><a href="#L-107"><span class="linenos"> 107</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
+</span><span id="L-108"><a href="#L-108"><span class="linenos"> 108</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-109"><a href="#L-109"><span class="linenos"> 109</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;incompatible type for idl[</span><span class="si">%s</span><span class="s1">].&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="L-110"><a href="#L-110"><span class="linenos"> 110</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-111"><a href="#L-111"><span class="linenos"> 111</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
+</span><span id="L-112"><a href="#L-112"><span class="linenos"> 112</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-113"><a href="#L-113"><span class="linenos"> 113</span></a>
+</span><span id="L-114"><a href="#L-114"><span class="linenos"> 114</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-115"><a href="#L-115"><span class="linenos"> 115</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span><span class="p">,</span> <span class="n">mean</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">))):</span>
+</span><span id="L-116"><a href="#L-116"><span class="linenos"> 116</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-117"><a href="#L-117"><span class="linenos"> 117</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-118"><a href="#L-118"><span class="linenos"> 118</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="L-119"><a href="#L-119"><span class="linenos"> 119</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span>
+</span><span id="L-120"><a href="#L-120"><span class="linenos"> 120</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-121"><a href="#L-121"><span class="linenos"> 121</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
+</span><span id="L-122"><a href="#L-122"><span class="linenos"> 122</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-123"><a href="#L-123"><span class="linenos"> 123</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-124"><a href="#L-124"><span class="linenos"> 124</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="L-125"><a href="#L-125"><span class="linenos"> 125</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible samples and idx for </span><span class="si">%s</span><span class="s1">: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
+</span><span id="L-126"><a href="#L-126"><span class="linenos"> 126</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span>
+</span><span id="L-127"><a href="#L-127"><span class="linenos"> 127</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-128"><a href="#L-128"><span class="linenos"> 128</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-129"><a href="#L-129"><span class="linenos"> 129</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">/=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
+</span><span id="L-130"><a href="#L-130"><span class="linenos"> 130</span></a>
+</span><span id="L-131"><a href="#L-131"><span class="linenos"> 131</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-132"><a href="#L-132"><span class="linenos"> 132</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-133"><a href="#L-133"><span class="linenos"> 133</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-134"><a href="#L-134"><span class="linenos"> 134</span></a>
+</span><span id="L-135"><a href="#L-135"><span class="linenos"> 135</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-136"><a href="#L-136"><span class="linenos"> 136</span></a>
+</span><span id="L-137"><a href="#L-137"><span class="linenos"> 137</span></a>    <span class="nd">@property</span>
+</span><span id="L-138"><a href="#L-138"><span class="linenos"> 138</span></a>    <span class="k">def</span> <span class="nf">value</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-139"><a href="#L-139"><span class="linenos"> 139</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_value</span>
+</span><span id="L-140"><a href="#L-140"><span class="linenos"> 140</span></a>
+</span><span id="L-141"><a href="#L-141"><span class="linenos"> 141</span></a>    <span class="nd">@property</span>
+</span><span id="L-142"><a href="#L-142"><span class="linenos"> 142</span></a>    <span class="k">def</span> <span class="nf">dvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-143"><a href="#L-143"><span class="linenos"> 143</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span><span id="L-144"><a href="#L-144"><span class="linenos"> 144</span></a>
+</span><span id="L-145"><a href="#L-145"><span class="linenos"> 145</span></a>    <span class="nd">@property</span>
+</span><span id="L-146"><a href="#L-146"><span class="linenos"> 146</span></a>    <span class="k">def</span> <span class="nf">e_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-147"><a href="#L-147"><span class="linenos"> 147</span></a>        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">]))</span>
+</span><span id="L-148"><a href="#L-148"><span class="linenos"> 148</span></a>
+</span><span id="L-149"><a href="#L-149"><span class="linenos"> 149</span></a>    <span class="nd">@property</span>
+</span><span id="L-150"><a href="#L-150"><span class="linenos"> 150</span></a>    <span class="k">def</span> <span class="nf">cov_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-151"><a href="#L-151"><span class="linenos"> 151</span></a>        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">()]))</span>
+</span><span id="L-152"><a href="#L-152"><span class="linenos"> 152</span></a>
+</span><span id="L-153"><a href="#L-153"><span class="linenos"> 153</span></a>    <span class="nd">@property</span>
+</span><span id="L-154"><a href="#L-154"><span class="linenos"> 154</span></a>    <span class="k">def</span> <span class="nf">mc_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-155"><a href="#L-155"><span class="linenos"> 155</span></a>        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]))</span>
+</span><span id="L-156"><a href="#L-156"><span class="linenos"> 156</span></a>
+</span><span id="L-157"><a href="#L-157"><span class="linenos"> 157</span></a>    <span class="nd">@property</span>
+</span><span id="L-158"><a href="#L-158"><span class="linenos"> 158</span></a>    <span class="k">def</span> <span class="nf">e_content</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-159"><a href="#L-159"><span class="linenos"> 159</span></a>        <span class="n">res</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-160"><a href="#L-160"><span class="linenos"> 160</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="L-161"><a href="#L-161"><span class="linenos"> 161</span></a>            <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">))</span>
+</span><span id="L-162"><a href="#L-162"><span class="linenos"> 162</span></a>            <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="L-163"><a href="#L-163"><span class="linenos"> 163</span></a>                <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e_name</span><span class="p">)</span>
+</span><span id="L-164"><a href="#L-164"><span class="linenos"> 164</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="L-165"><a href="#L-165"><span class="linenos"> 165</span></a>
+</span><span id="L-166"><a href="#L-166"><span class="linenos"> 166</span></a>    <span class="nd">@property</span>
+</span><span id="L-167"><a href="#L-167"><span class="linenos"> 167</span></a>    <span class="k">def</span> <span class="nf">covobs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-168"><a href="#L-168"><span class="linenos"> 168</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span>
+</span><span id="L-169"><a href="#L-169"><span class="linenos"> 169</span></a>
+</span><span id="L-170"><a href="#L-170"><span class="linenos"> 170</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-171"><a href="#L-171"><span class="linenos"> 171</span></a>        <span class="sd">&quot;&quot;&quot;Estimate the error and related properties of the Obs.</span>
+</span><span id="L-172"><a href="#L-172"><span class="linenos"> 172</span></a>
+</span><span id="L-173"><a href="#L-173"><span class="linenos"> 173</span></a><span class="sd">        Parameters</span>
+</span><span id="L-174"><a href="#L-174"><span class="linenos"> 174</span></a><span class="sd">        ----------</span>
+</span><span id="L-175"><a href="#L-175"><span class="linenos"> 175</span></a><span class="sd">        S : float</span>
+</span><span id="L-176"><a href="#L-176"><span class="linenos"> 176</span></a><span class="sd">            specifies a custom value for the parameter S (default 2.0).</span>
+</span><span id="L-177"><a href="#L-177"><span class="linenos"> 177</span></a><span class="sd">            If set to 0 it is assumed that the data exhibits no</span>
+</span><span id="L-178"><a href="#L-178"><span class="linenos"> 178</span></a><span class="sd">            autocorrelation. In this case the error estimates coincides</span>
+</span><span id="L-179"><a href="#L-179"><span class="linenos"> 179</span></a><span class="sd">            with the sample standard error.</span>
+</span><span id="L-180"><a href="#L-180"><span class="linenos"> 180</span></a><span class="sd">        tau_exp : float</span>
+</span><span id="L-181"><a href="#L-181"><span class="linenos"> 181</span></a><span class="sd">            positive value triggers the critical slowing down analysis</span>
+</span><span id="L-182"><a href="#L-182"><span class="linenos"> 182</span></a><span class="sd">            (default 0.0).</span>
+</span><span id="L-183"><a href="#L-183"><span class="linenos"> 183</span></a><span class="sd">        N_sigma : float</span>
+</span><span id="L-184"><a href="#L-184"><span class="linenos"> 184</span></a><span class="sd">            number of standard deviations from zero until the tail is</span>
+</span><span id="L-185"><a href="#L-185"><span class="linenos"> 185</span></a><span class="sd">            attached to the autocorrelation function (default 1).</span>
+</span><span id="L-186"><a href="#L-186"><span class="linenos"> 186</span></a><span class="sd">        fft : bool</span>
+</span><span id="L-187"><a href="#L-187"><span class="linenos"> 187</span></a><span class="sd">            determines whether the fft algorithm is used for the computation</span>
+</span><span id="L-188"><a href="#L-188"><span class="linenos"> 188</span></a><span class="sd">            of the autocorrelation function (default True)</span>
+</span><span id="L-189"><a href="#L-189"><span class="linenos"> 189</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-190"><a href="#L-190"><span class="linenos"> 190</span></a>
+</span><span id="L-191"><a href="#L-191"><span class="linenos"> 191</span></a>        <span class="n">e_content</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_content</span>
+</span><span id="L-192"><a href="#L-192"><span class="linenos"> 192</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-193"><a href="#L-193"><span class="linenos"> 193</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-194"><a href="#L-194"><span class="linenos"> 194</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-195"><a href="#L-195"><span class="linenos"> 195</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-196"><a href="#L-196"><span class="linenos"> 196</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-197"><a href="#L-197"><span class="linenos"> 197</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-198"><a href="#L-198"><span class="linenos"> 198</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-199"><a href="#L-199"><span class="linenos"> 199</span></a>        <span class="n">e_gamma</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-200"><a href="#L-200"><span class="linenos"> 200</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-201"><a href="#L-201"><span class="linenos"> 201</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-202"><a href="#L-202"><span class="linenos"> 202</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-203"><a href="#L-203"><span class="linenos"> 203</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-204"><a href="#L-204"><span class="linenos"> 204</span></a>
+</span><span id="L-205"><a href="#L-205"><span class="linenos"> 205</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">S</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-206"><a href="#L-206"><span class="linenos"> 206</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-207"><a href="#L-207"><span class="linenos"> 207</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-208"><a href="#L-208"><span class="linenos"> 208</span></a>
+</span><span id="L-209"><a href="#L-209"><span class="linenos"> 209</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;fft&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
+</span><span id="L-210"><a href="#L-210"><span class="linenos"> 210</span></a>            <span class="n">fft</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="L-211"><a href="#L-211"><span class="linenos"> 211</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-212"><a href="#L-212"><span class="linenos"> 212</span></a>            <span class="n">fft</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-213"><a href="#L-213"><span class="linenos"> 213</span></a>
+</span><span id="L-214"><a href="#L-214"><span class="linenos"> 214</span></a>        <span class="k">def</span> <span class="nf">_parse_kwarg</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">):</span>
+</span><span id="L-215"><a href="#L-215"><span class="linenos"> 215</span></a>            <span class="k">if</span> <span class="n">kwarg_name</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-216"><a href="#L-216"><span class="linenos"> 216</span></a>                <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
+</span><span id="L-217"><a href="#L-217"><span class="linenos"> 217</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+</span><span id="L-218"><a href="#L-218"><span class="linenos"> 218</span></a>                    <span class="k">if</span> <span class="n">tmp</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-219"><a href="#L-219"><span class="linenos"> 219</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; has to be larger or equal to 0.&#39;</span><span class="p">)</span>
+</span><span id="L-220"><a href="#L-220"><span class="linenos"> 220</span></a>                    <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="L-221"><a href="#L-221"><span class="linenos"> 221</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
+</span><span id="L-222"><a href="#L-222"><span class="linenos"> 222</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-223"><a href="#L-223"><span class="linenos"> 223</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; is not in proper format.&#39;</span><span class="p">)</span>
+</span><span id="L-224"><a href="#L-224"><span class="linenos"> 224</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-225"><a href="#L-225"><span class="linenos"> 225</span></a>                <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="L-226"><a href="#L-226"><span class="linenos"> 226</span></a>                    <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">):</span>
+</span><span id="L-227"><a href="#L-227"><span class="linenos"> 227</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span>
+</span><span id="L-228"><a href="#L-228"><span class="linenos"> 228</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-229"><a href="#L-229"><span class="linenos"> 229</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_global&#39;</span><span class="p">)</span>
+</span><span id="L-230"><a href="#L-230"><span class="linenos"> 230</span></a>
+</span><span id="L-231"><a href="#L-231"><span class="linenos"> 231</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;S&#39;</span><span class="p">)</span>
+</span><span id="L-232"><a href="#L-232"><span class="linenos"> 232</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;tau_exp&#39;</span><span class="p">)</span>
+</span><span id="L-233"><a href="#L-233"><span class="linenos"> 233</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;N_sigma&#39;</span><span class="p">)</span>
+</span><span id="L-234"><a href="#L-234"><span class="linenos"> 234</span></a>
+</span><span id="L-235"><a href="#L-235"><span class="linenos"> 235</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="L-236"><a href="#L-236"><span class="linenos"> 236</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-237"><a href="#L-237"><span class="linenos"> 237</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-238"><a href="#L-238"><span class="linenos"> 238</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="L-239"><a href="#L-239"><span class="linenos"> 239</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="L-240"><a href="#L-240"><span class="linenos"> 240</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-241"><a href="#L-241"><span class="linenos"> 241</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-242"><a href="#L-242"><span class="linenos"> 242</span></a>
+</span><span id="L-243"><a href="#L-243"><span class="linenos"> 243</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]])</span>
+</span><span id="L-244"><a href="#L-244"><span class="linenos"> 244</span></a>            <span class="n">w_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span>
+</span><span id="L-245"><a href="#L-245"><span class="linenos"> 245</span></a>            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="L-246"><a href="#L-246"><span class="linenos"> 246</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="L-247"><a href="#L-247"><span class="linenos"> 247</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="L-248"><a href="#L-248"><span class="linenos"> 248</span></a>
+</span><span id="L-249"><a href="#L-249"><span class="linenos"> 249</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-250"><a href="#L-250"><span class="linenos"> 250</span></a>                <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
+</span><span id="L-251"><a href="#L-251"><span class="linenos"> 251</span></a>
+</span><span id="L-252"><a href="#L-252"><span class="linenos"> 252</span></a>            <span class="n">gamma_div</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="L-253"><a href="#L-253"><span class="linenos"> 253</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-254"><a href="#L-254"><span class="linenos"> 254</span></a>                <span class="n">gamma_div</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])),</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
+</span><span id="L-255"><a href="#L-255"><span class="linenos"> 255</span></a>            <span class="n">gamma_div</span><span class="p">[</span><span class="n">gamma_div</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="L-256"><a href="#L-256"><span class="linenos"> 256</span></a>            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/=</span> <span class="n">gamma_div</span><span class="p">[:</span><span class="n">w_max</span><span class="p">]</span>
+</span><span id="L-257"><a href="#L-257"><span class="linenos"> 257</span></a>
+</span><span id="L-258"><a href="#L-258"><span class="linenos"> 258</span></a>            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">tiny</span><span class="p">:</span>  <span class="c1"># Prevent division by zero</span>
+</span><span id="L-259"><a href="#L-259"><span class="linenos"> 259</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
+</span><span id="L-260"><a href="#L-260"><span class="linenos"> 260</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-261"><a href="#L-261"><span class="linenos"> 261</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-262"><a href="#L-262"><span class="linenos"> 262</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-263"><a href="#L-263"><span class="linenos"> 263</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-264"><a href="#L-264"><span class="linenos"> 264</span></a>                <span class="k">continue</span>
+</span><span id="L-265"><a href="#L-265"><span class="linenos"> 265</span></a>
+</span><span id="L-266"><a href="#L-266"><span class="linenos"> 266</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">/</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-267"><a href="#L-267"><span class="linenos"> 267</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(([</span><span class="mf">0.5</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:])))</span>
+</span><span id="L-268"><a href="#L-268"><span class="linenos"> 268</span></a>            <span class="c1"># Make sure no entry of tauint is smaller than 0.5</span>
+</span><span id="L-269"><a href="#L-269"><span class="linenos"> 269</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="mf">0.5</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span>
+</span><span id="L-270"><a href="#L-270"><span class="linenos"> 270</span></a>            <span class="c1"># hep-lat/0306017 eq. (42)</span>
+</span><span id="L-271"><a href="#L-271"><span class="linenos"> 271</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-272"><a href="#L-272"><span class="linenos"> 272</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-273"><a href="#L-273"><span class="linenos"> 273</span></a>
+</span><span id="L-274"><a href="#L-274"><span class="linenos"> 274</span></a>            <span class="k">def</span> <span class="nf">_compute_drho</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="L-275"><a href="#L-275"><span class="linenos"> 275</span></a>                <span class="n">tmp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">i</span><span class="p">]])</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="n">i</span><span class="p">]</span>
+</span><span id="L-276"><a href="#L-276"><span class="linenos"> 276</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">tmp</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-277"><a href="#L-277"><span class="linenos"> 277</span></a>
+</span><span id="L-278"><a href="#L-278"><span class="linenos"> 278</span></a>            <span class="n">_compute_drho</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-279"><a href="#L-279"><span class="linenos"> 279</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-280"><a href="#L-280"><span class="linenos"> 280</span></a>                <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
+</span><span id="L-281"><a href="#L-281"><span class="linenos"> 281</span></a>                <span class="c1"># Critical slowing down analysis</span>
+</span><span id="L-282"><a href="#L-282"><span class="linenos"> 282</span></a>                <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">&lt;=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-283"><a href="#L-283"><span class="linenos"> 283</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Need at least 8 samples for tau_exp error analysis&quot;</span><span class="p">)</span>
+</span><span id="L-284"><a href="#L-284"><span class="linenos"> 284</span></a>                <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="L-285"><a href="#L-285"><span class="linenos"> 285</span></a>                    <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-286"><a href="#L-286"><span class="linenos"> 286</span></a>                    <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-287"><a href="#L-287"><span class="linenos"> 287</span></a>                        <span class="c1"># Bias correction hep-lat/0306017 eq. (49) included</span>
+</span><span id="L-288"><a href="#L-288"><span class="linenos"> 288</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>  <span class="c1"># The absolute makes sure, that the tail contribution is always positive</span>
+</span><span id="L-289"><a href="#L-289"><span class="linenos"> 289</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="L-290"><a href="#L-290"><span class="linenos"> 290</span></a>                        <span class="c1"># Error of tau_exp neglected so far, missing term: self.e_rho[e_name][n + 1] ** 2 * d_tau_exp ** 2</span>
+</span><span id="L-291"><a href="#L-291"><span class="linenos"> 291</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-292"><a href="#L-292"><span class="linenos"> 292</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-293"><a href="#L-293"><span class="linenos"> 293</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
+</span><span id="L-294"><a href="#L-294"><span class="linenos"> 294</span></a>                        <span class="k">break</span>
+</span><span id="L-295"><a href="#L-295"><span class="linenos"> 295</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-296"><a href="#L-296"><span class="linenos"> 296</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-297"><a href="#L-297"><span class="linenos"> 297</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
+</span><span id="L-298"><a href="#L-298"><span class="linenos"> 298</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-299"><a href="#L-299"><span class="linenos"> 299</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="p">(</span><span class="n">e_N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-300"><a href="#L-300"><span class="linenos"> 300</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-301"><a href="#L-301"><span class="linenos"> 301</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-302"><a href="#L-302"><span class="linenos"> 302</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-303"><a href="#L-303"><span class="linenos"> 303</span></a>                    <span class="c1"># Standard automatic windowing procedure</span>
+</span><span id="L-304"><a href="#L-304"><span class="linenos"> 304</span></a>                    <span class="n">tau</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">((</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-305"><a href="#L-305"><span class="linenos"> 305</span></a>                    <span class="n">g_w</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">/</span> <span class="n">tau</span><span class="p">)</span> <span class="o">-</span> <span class="n">tau</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">*</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-306"><a href="#L-306"><span class="linenos"> 306</span></a>                    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">):</span>
+</span><span id="L-307"><a href="#L-307"><span class="linenos"> 307</span></a>                        <span class="k">if</span> <span class="n">n</span> <span class="o">&lt;</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="L-308"><a href="#L-308"><span class="linenos"> 308</span></a>                            <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-309"><a href="#L-309"><span class="linenos"> 309</span></a>                        <span class="k">if</span> <span class="n">g_w</span><span class="p">[</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-310"><a href="#L-310"><span class="linenos"> 310</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>  <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
+</span><span id="L-311"><a href="#L-311"><span class="linenos"> 311</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span>
+</span><span id="L-312"><a href="#L-312"><span class="linenos"> 312</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-313"><a href="#L-313"><span class="linenos"> 313</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-314"><a href="#L-314"><span class="linenos"> 314</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
+</span><span id="L-315"><a href="#L-315"><span class="linenos"> 315</span></a>                            <span class="k">break</span>
+</span><span id="L-316"><a href="#L-316"><span class="linenos"> 316</span></a>
+</span><span id="L-317"><a href="#L-317"><span class="linenos"> 317</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="L-318"><a href="#L-318"><span class="linenos"> 318</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="L-319"><a href="#L-319"><span class="linenos"> 319</span></a>
+</span><span id="L-320"><a href="#L-320"><span class="linenos"> 320</span></a>        <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="L-321"><a href="#L-321"><span class="linenos"> 321</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
+</span><span id="L-322"><a href="#L-322"><span class="linenos"> 322</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-323"><a href="#L-323"><span class="linenos"> 323</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">**</span><span class="mi">2</span>
+</span><span id="L-324"><a href="#L-324"><span class="linenos"> 324</span></a>
+</span><span id="L-325"><a href="#L-325"><span class="linenos"> 325</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
+</span><span id="L-326"><a href="#L-326"><span class="linenos"> 326</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-327"><a href="#L-327"><span class="linenos"> 327</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-328"><a href="#L-328"><span class="linenos"> 328</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-329"><a href="#L-329"><span class="linenos"> 329</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">)</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span><span id="L-330"><a href="#L-330"><span class="linenos"> 330</span></a>        <span class="k">return</span>
+</span><span id="L-331"><a href="#L-331"><span class="linenos"> 331</span></a>
+</span><span id="L-332"><a href="#L-332"><span class="linenos"> 332</span></a>    <span class="k">def</span> <span class="nf">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">):</span>
+</span><span id="L-333"><a href="#L-333"><span class="linenos"> 333</span></a>        <span class="sd">&quot;&quot;&quot;Calculate Gamma_{AA} from the deltas, which are defined on idx.</span>
+</span><span id="L-334"><a href="#L-334"><span class="linenos"> 334</span></a><span class="sd">           idx is assumed to be a contiguous range (possibly with a stepsize != 1)</span>
+</span><span id="L-335"><a href="#L-335"><span class="linenos"> 335</span></a>
+</span><span id="L-336"><a href="#L-336"><span class="linenos"> 336</span></a><span class="sd">        Parameters</span>
+</span><span id="L-337"><a href="#L-337"><span class="linenos"> 337</span></a><span class="sd">        ----------</span>
+</span><span id="L-338"><a href="#L-338"><span class="linenos"> 338</span></a><span class="sd">        deltas : list</span>
+</span><span id="L-339"><a href="#L-339"><span class="linenos"> 339</span></a><span class="sd">            List of fluctuations</span>
+</span><span id="L-340"><a href="#L-340"><span class="linenos"> 340</span></a><span class="sd">        idx : list</span>
+</span><span id="L-341"><a href="#L-341"><span class="linenos"> 341</span></a><span class="sd">            List or range of configurations on which the deltas are defined.</span>
+</span><span id="L-342"><a href="#L-342"><span class="linenos"> 342</span></a><span class="sd">        shape : int</span>
+</span><span id="L-343"><a href="#L-343"><span class="linenos"> 343</span></a><span class="sd">            Number of configurations in idx.</span>
+</span><span id="L-344"><a href="#L-344"><span class="linenos"> 344</span></a><span class="sd">        w_max : int</span>
+</span><span id="L-345"><a href="#L-345"><span class="linenos"> 345</span></a><span class="sd">            Upper bound for the summation window.</span>
+</span><span id="L-346"><a href="#L-346"><span class="linenos"> 346</span></a><span class="sd">        fft : bool</span>
+</span><span id="L-347"><a href="#L-347"><span class="linenos"> 347</span></a><span class="sd">            determines whether the fft algorithm is used for the computation</span>
+</span><span id="L-348"><a href="#L-348"><span class="linenos"> 348</span></a><span class="sd">            of the autocorrelation function.</span>
+</span><span id="L-349"><a href="#L-349"><span class="linenos"> 349</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-350"><a href="#L-350"><span class="linenos"> 350</span></a>        <span class="n">gamma</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="L-351"><a href="#L-351"><span class="linenos"> 351</span></a>        <span class="n">deltas</span> <span class="o">=</span> <span class="n">_expand_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">)</span>
+</span><span id="L-352"><a href="#L-352"><span class="linenos"> 352</span></a>        <span class="n">new_shape</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
+</span><span id="L-353"><a href="#L-353"><span class="linenos"> 353</span></a>        <span class="k">if</span> <span class="n">fft</span><span class="p">:</span>
+</span><span id="L-354"><a href="#L-354"><span class="linenos"> 354</span></a>            <span class="n">max_gamma</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">new_shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span>
+</span><span id="L-355"><a href="#L-355"><span class="linenos"> 355</span></a>            <span class="c1"># The padding for the fft has to be even</span>
+</span><span id="L-356"><a href="#L-356"><span class="linenos"> 356</span></a>            <span class="n">padding</span> <span class="o">=</span> <span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span><span class="p">)</span> <span class="o">%</span> <span class="mi">2</span>
+</span><span id="L-357"><a href="#L-357"><span class="linenos"> 357</span></a>            <span class="n">gamma</span><span class="p">[:</span><span class="n">max_gamma</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">irfft</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">rfft</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">padding</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)[:</span><span class="n">max_gamma</span><span class="p">]</span>
+</span><span id="L-358"><a href="#L-358"><span class="linenos"> 358</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-359"><a href="#L-359"><span class="linenos"> 359</span></a>            <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">w_max</span><span class="p">):</span>
+</span><span id="L-360"><a href="#L-360"><span class="linenos"> 360</span></a>                <span class="k">if</span> <span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-361"><a href="#L-361"><span class="linenos"> 361</span></a>                    <span class="n">gamma</span><span class="p">[</span><span class="n">n</span><span class="p">]</span> <span class="o">+=</span> <span class="n">deltas</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">:</span><span class="n">new_shape</span><span class="p">])</span>
+</span><span id="L-362"><a href="#L-362"><span class="linenos"> 362</span></a>
+</span><span id="L-363"><a href="#L-363"><span class="linenos"> 363</span></a>        <span class="k">return</span> <span class="n">gamma</span>
+</span><span id="L-364"><a href="#L-364"><span class="linenos"> 364</span></a>
+</span><span id="L-365"><a href="#L-365"><span class="linenos"> 365</span></a>    <span class="k">def</span> <span class="nf">details</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ens_content</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="L-366"><a href="#L-366"><span class="linenos"> 366</span></a>        <span class="sd">&quot;&quot;&quot;Output detailed properties of the Obs.</span>
+</span><span id="L-367"><a href="#L-367"><span class="linenos"> 367</span></a>
+</span><span id="L-368"><a href="#L-368"><span class="linenos"> 368</span></a><span class="sd">        Parameters</span>
+</span><span id="L-369"><a href="#L-369"><span class="linenos"> 369</span></a><span class="sd">        ----------</span>
+</span><span id="L-370"><a href="#L-370"><span class="linenos"> 370</span></a><span class="sd">        ens_content : bool</span>
+</span><span id="L-371"><a href="#L-371"><span class="linenos"> 371</span></a><span class="sd">            print details about the ensembles and replica if true.</span>
+</span><span id="L-372"><a href="#L-372"><span class="linenos"> 372</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-373"><a href="#L-373"><span class="linenos"> 373</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-374"><a href="#L-374"><span class="linenos"> 374</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Description:&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="L-375"><a href="#L-375"><span class="linenos"> 375</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="L-376"><a href="#L-376"><span class="linenos"> 376</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
+</span><span id="L-377"><a href="#L-377"><span class="linenos"> 377</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-378"><a href="#L-378"><span class="linenos"> 378</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-379"><a href="#L-379"><span class="linenos"> 379</span></a>                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
+</span><span id="L-380"><a href="#L-380"><span class="linenos"> 380</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-381"><a href="#L-381"><span class="linenos"> 381</span></a>                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">*</span> <span class="mi">100</span>
+</span><span id="L-382"><a href="#L-382"><span class="linenos"> 382</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> (</span><span class="si">%3.3f%%</span><span class="s1">)&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">,</span> <span class="n">percentage</span><span class="p">))</span>
+</span><span id="L-383"><a href="#L-383"><span class="linenos"> 383</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-384"><a href="#L-384"><span class="linenos"> 384</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; Ensemble errors:&#39;</span><span class="p">)</span>
+</span><span id="L-385"><a href="#L-385"><span class="linenos"> 385</span></a>            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
+</span><span id="L-386"><a href="#L-386"><span class="linenos"> 386</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-387"><a href="#L-387"><span class="linenos"> 387</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-388"><a href="#L-388"><span class="linenos"> 388</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-389"><a href="#L-389"><span class="linenos"> 389</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> tau_exp = </span><span class="si">%3.2f</span><span class="s1">,  N_sigma = </span><span class="si">%1.0i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-390"><a href="#L-390"><span class="linenos"> 390</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-391"><a href="#L-391"><span class="linenos"> 391</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> S = </span><span class="si">%3.2f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-392"><a href="#L-392"><span class="linenos"> 392</span></a>            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="L-393"><a href="#L-393"><span class="linenos"> 393</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-394"><a href="#L-394"><span class="linenos"> 394</span></a>        <span class="k">if</span> <span class="n">ens_content</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-395"><a href="#L-395"><span class="linenos"> 395</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-396"><a href="#L-396"><span class="linenos"> 396</span></a>                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensemble:&#39;</span><span class="p">)</span>
+</span><span id="L-397"><a href="#L-397"><span class="linenos"> 397</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-398"><a href="#L-398"><span class="linenos"> 398</span></a>                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensembles:&#39;</span><span class="p">)</span>
+</span><span id="L-399"><a href="#L-399"><span class="linenos"> 399</span></a>            <span class="n">my_string_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-400"><a href="#L-400"><span class="linenos"> 400</span></a>            <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">items</span><span class="p">()):</span>
+</span><span id="L-401"><a href="#L-401"><span class="linenos"> 401</span></a>                <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
+</span><span id="L-402"><a href="#L-402"><span class="linenos"> 402</span></a>                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Ensemble &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="L-403"><a href="#L-403"><span class="linenos"> 403</span></a>                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-404"><a href="#L-404"><span class="linenos"> 404</span></a>                        <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
+</span><span id="L-405"><a href="#L-405"><span class="linenos"> 405</span></a>                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="L-406"><a href="#L-406"><span class="linenos"> 406</span></a>                            <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
+</span><span id="L-407"><a href="#L-407"><span class="linenos"> 407</span></a>                        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-408"><a href="#L-408"><span class="linenos"> 408</span></a>                            <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
+</span><span id="L-409"><a href="#L-409"><span class="linenos"> 409</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-410"><a href="#L-410"><span class="linenos"> 410</span></a>                        <span class="n">sublist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-411"><a href="#L-411"><span class="linenos"> 411</span></a>                        <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">value</span><span class="p">:</span>
+</span><span id="L-412"><a href="#L-412"><span class="linenos"> 412</span></a>                            <span class="n">my_substring</span> <span class="o">=</span> <span class="s1">&#39;    &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Replicum &#39;&quot;</span> <span class="o">+</span> <span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="L-413"><a href="#L-413"><span class="linenos"> 413</span></a>                            <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
+</span><span id="L-414"><a href="#L-414"><span class="linenos"> 414</span></a>                            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="L-415"><a href="#L-415"><span class="linenos"> 415</span></a>                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
+</span><span id="L-416"><a href="#L-416"><span class="linenos"> 416</span></a>                            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-417"><a href="#L-417"><span class="linenos"> 417</span></a>                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
+</span><span id="L-418"><a href="#L-418"><span class="linenos"> 418</span></a>                            <span class="n">sublist</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_substring</span><span class="p">)</span>
+</span><span id="L-419"><a href="#L-419"><span class="linenos"> 419</span></a>
+</span><span id="L-420"><a href="#L-420"><span class="linenos"> 420</span></a>                        <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sublist</span><span class="p">)</span>
+</span><span id="L-421"><a href="#L-421"><span class="linenos"> 421</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-422"><a href="#L-422"><span class="linenos"> 422</span></a>                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Covobs   &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="L-423"><a href="#L-423"><span class="linenos"> 423</span></a>                <span class="n">my_string_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_string</span><span class="p">)</span>
+</span><span id="L-424"><a href="#L-424"><span class="linenos"> 424</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">my_string_list</span><span class="p">))</span>
+</span><span id="L-425"><a href="#L-425"><span class="linenos"> 425</span></a>
+</span><span id="L-426"><a href="#L-426"><span class="linenos"> 426</span></a>    <span class="k">def</span> <span class="nf">is_zero_within_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sigma</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="L-427"><a href="#L-427"><span class="linenos"> 427</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within &#39;sigma&#39; standard errors.</span>
+</span><span id="L-428"><a href="#L-428"><span class="linenos"> 428</span></a>
+</span><span id="L-429"><a href="#L-429"><span class="linenos"> 429</span></a><span class="sd">        Parameters</span>
+</span><span id="L-430"><a href="#L-430"><span class="linenos"> 430</span></a><span class="sd">        ----------</span>
+</span><span id="L-431"><a href="#L-431"><span class="linenos"> 431</span></a><span class="sd">        sigma : int</span>
+</span><span id="L-432"><a href="#L-432"><span class="linenos"> 432</span></a><span class="sd">            Number of standard errors used for the check.</span>
+</span><span id="L-433"><a href="#L-433"><span class="linenos"> 433</span></a>
+</span><span id="L-434"><a href="#L-434"><span class="linenos"> 434</span></a><span class="sd">        Works only properly when the gamma method was run.</span>
+</span><span id="L-435"><a href="#L-435"><span class="linenos"> 435</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-436"><a href="#L-436"><span class="linenos"> 436</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span> <span class="ow">or</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="n">sigma</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span><span id="L-437"><a href="#L-437"><span class="linenos"> 437</span></a>
+</span><span id="L-438"><a href="#L-438"><span class="linenos"> 438</span></a>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-10</span><span class="p">):</span>
+</span><span id="L-439"><a href="#L-439"><span class="linenos"> 439</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within a given tolerance.</span>
+</span><span id="L-440"><a href="#L-440"><span class="linenos"> 440</span></a>
+</span><span id="L-441"><a href="#L-441"><span class="linenos"> 441</span></a><span class="sd">        Parameters</span>
+</span><span id="L-442"><a href="#L-442"><span class="linenos"> 442</span></a><span class="sd">        ----------</span>
+</span><span id="L-443"><a href="#L-443"><span class="linenos"> 443</span></a><span class="sd">        atol : float</span>
+</span><span id="L-444"><a href="#L-444"><span class="linenos"> 444</span></a><span class="sd">            Absolute tolerance (for details see numpy documentation).</span>
+</span><span id="L-445"><a href="#L-445"><span class="linenos"> 445</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-446"><a href="#L-446"><span class="linenos"> 446</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="o">.</span><span class="n">errsq</span><span class="p">(),</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
+</span><span id="L-447"><a href="#L-447"><span class="linenos"> 447</span></a>
+</span><span id="L-448"><a href="#L-448"><span class="linenos"> 448</span></a>    <span class="k">def</span> <span class="nf">plot_tauint</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-449"><a href="#L-449"><span class="linenos"> 449</span></a>        <span class="sd">&quot;&quot;&quot;Plot integrated autocorrelation time for each ensemble.</span>
+</span><span id="L-450"><a href="#L-450"><span class="linenos"> 450</span></a>
+</span><span id="L-451"><a href="#L-451"><span class="linenos"> 451</span></a><span class="sd">        Parameters</span>
+</span><span id="L-452"><a href="#L-452"><span class="linenos"> 452</span></a><span class="sd">        ----------</span>
+</span><span id="L-453"><a href="#L-453"><span class="linenos"> 453</span></a><span class="sd">        save : str</span>
+</span><span id="L-454"><a href="#L-454"><span class="linenos"> 454</span></a><span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
+</span><span id="L-455"><a href="#L-455"><span class="linenos"> 455</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-456"><a href="#L-456"><span class="linenos"> 456</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="L-457"><a href="#L-457"><span class="linenos"> 457</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-458"><a href="#L-458"><span class="linenos"> 458</span></a>
+</span><span id="L-459"><a href="#L-459"><span class="linenos"> 459</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="L-460"><a href="#L-460"><span class="linenos"> 460</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="L-461"><a href="#L-461"><span class="linenos"> 461</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
+</span><span id="L-462"><a href="#L-462"><span class="linenos"> 462</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
+</span><span id="L-463"><a href="#L-463"><span class="linenos"> 463</span></a>            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-464"><a href="#L-464"><span class="linenos"> 464</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-465"><a href="#L-465"><span class="linenos"> 465</span></a>                <span class="n">base</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]]</span>
+</span><span id="L-466"><a href="#L-466"><span class="linenos"> 466</span></a>                <span class="n">x_help</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
+</span><span id="L-467"><a href="#L-467"><span class="linenos"> 467</span></a>                <span class="n">y_help</span> <span class="o">=</span> <span class="p">(</span><span class="n">x_help</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">x_help</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)))</span> <span class="o">+</span> <span class="n">base</span>
+</span><span id="L-468"><a href="#L-468"><span class="linenos"> 468</span></a>                <span class="n">x_arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
+</span><span id="L-469"><a href="#L-469"><span class="linenos"> 469</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_arr</span><span class="p">,</span> <span class="n">y_help</span><span class="p">,</span> <span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="L-470"><a href="#L-470"><span class="linenos"> 470</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
+</span><span id="L-471"><a href="#L-471"><span class="linenos"> 471</span></a>                             <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
+</span><span id="L-472"><a href="#L-472"><span class="linenos"> 472</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
+</span><span id="L-473"><a href="#L-473"><span class="linenos"> 473</span></a>                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, $\tau_\mathrm</span><span class="si">{exp}</span><span class="s1">$=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
+</span><span id="L-474"><a href="#L-474"><span class="linenos"> 474</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-475"><a href="#L-475"><span class="linenos"> 475</span></a>                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
+</span><span id="L-476"><a href="#L-476"><span class="linenos"> 476</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="L-477"><a href="#L-477"><span class="linenos"> 477</span></a>
+</span><span id="L-478"><a href="#L-478"><span class="linenos"> 478</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">)[:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">)</span>
+</span><span id="L-479"><a href="#L-479"><span class="linenos"> 479</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">)</span>
+</span><span id="L-480"><a href="#L-480"><span class="linenos"> 480</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="L-481"><a href="#L-481"><span class="linenos"> 481</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
+</span><span id="L-482"><a href="#L-482"><span class="linenos"> 482</span></a>            <span class="n">ylim</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">()</span>
+</span><span id="L-483"><a href="#L-483"><span class="linenos"> 483</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="nb">max</span><span class="p">(</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">ylim</span><span class="p">[</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-484"><a href="#L-484"><span class="linenos"> 484</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-485"><a href="#L-485"><span class="linenos"> 485</span></a>            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="L-486"><a href="#L-486"><span class="linenos"> 486</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+</span><span id="L-487"><a href="#L-487"><span class="linenos"> 487</span></a>
+</span><span id="L-488"><a href="#L-488"><span class="linenos"> 488</span></a>    <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-489"><a href="#L-489"><span class="linenos"> 489</span></a>        <span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
+</span><span id="L-490"><a href="#L-490"><span class="linenos"> 490</span></a>
+</span><span id="L-491"><a href="#L-491"><span class="linenos"> 491</span></a><span class="sd">        Parameters</span>
+</span><span id="L-492"><a href="#L-492"><span class="linenos"> 492</span></a><span class="sd">        ----------</span>
+</span><span id="L-493"><a href="#L-493"><span class="linenos"> 493</span></a><span class="sd">        save : str</span>
+</span><span id="L-494"><a href="#L-494"><span class="linenos"> 494</span></a><span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
+</span><span id="L-495"><a href="#L-495"><span class="linenos"> 495</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-496"><a href="#L-496"><span class="linenos"> 496</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="L-497"><a href="#L-497"><span class="linenos"> 497</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-498"><a href="#L-498"><span class="linenos"> 498</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="L-499"><a href="#L-499"><span class="linenos"> 499</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="L-500"><a href="#L-500"><span class="linenos"> 500</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
+</span><span id="L-501"><a href="#L-501"><span class="linenos"> 501</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
+</span><span id="L-502"><a href="#L-502"><span class="linenos"> 502</span></a>            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-503"><a href="#L-503"><span class="linenos"> 503</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">length</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="L-504"><a href="#L-504"><span class="linenos"> 504</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="L-505"><a href="#L-505"><span class="linenos"> 505</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-506"><a href="#L-506"><span class="linenos"> 506</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
+</span><span id="L-507"><a href="#L-507"><span class="linenos"> 507</span></a>                         <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k-&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-508"><a href="#L-508"><span class="linenos"> 508</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
+</span><span id="L-509"><a href="#L-509"><span class="linenos"> 509</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, tau\_exp=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
+</span><span id="L-510"><a href="#L-510"><span class="linenos"> 510</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-511"><a href="#L-511"><span class="linenos"> 511</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="L-512"><a href="#L-512"><span class="linenos"> 512</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
+</span><span id="L-513"><a href="#L-513"><span class="linenos"> 513</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-514"><a href="#L-514"><span class="linenos"> 514</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
+</span><span id="L-515"><a href="#L-515"><span class="linenos"> 515</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-516"><a href="#L-516"><span class="linenos"> 516</span></a>            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="L-517"><a href="#L-517"><span class="linenos"> 517</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+</span><span id="L-518"><a href="#L-518"><span class="linenos"> 518</span></a>
+</span><span id="L-519"><a href="#L-519"><span class="linenos"> 519</span></a>    <span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-520"><a href="#L-520"><span class="linenos"> 520</span></a>        <span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
+</span><span id="L-521"><a href="#L-521"><span class="linenos"> 521</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="L-522"><a href="#L-522"><span class="linenos"> 522</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-523"><a href="#L-523"><span class="linenos"> 523</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="L-524"><a href="#L-524"><span class="linenos"> 524</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-525"><a href="#L-525"><span class="linenos"> 525</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No replica distribution for a single replicum (&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;)&#39;</span><span class="p">)</span>
+</span><span id="L-526"><a href="#L-526"><span class="linenos"> 526</span></a>                <span class="k">continue</span>
+</span><span id="L-527"><a href="#L-527"><span class="linenos"> 527</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-528"><a href="#L-528"><span class="linenos"> 528</span></a>            <span class="n">sub_r_mean</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-529"><a href="#L-529"><span class="linenos"> 529</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="L-530"><a href="#L-530"><span class="linenos"> 530</span></a>                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="L-531"><a href="#L-531"><span class="linenos"> 531</span></a>                <span class="n">sub_r_mean</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span>
+</span><span id="L-532"><a href="#L-532"><span class="linenos"> 532</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
+</span><span id="L-533"><a href="#L-533"><span class="linenos"> 533</span></a>            <span class="n">sub_r_mean</span> <span class="o">/=</span> <span class="n">e_N</span>
+</span><span id="L-534"><a href="#L-534"><span class="linenos"> 534</span></a>            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-535"><a href="#L-535"><span class="linenos"> 535</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="L-536"><a href="#L-536"><span class="linenos"> 536</span></a>                <span class="n">arr</span><span class="p">[</span><span class="n">r</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="n">sub_r_mean</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_N</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-537"><a href="#L-537"><span class="linenos"> 537</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">hist</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="n">rwidth</span><span class="o">=</span><span class="mf">0.8</span><span class="p">,</span> <span class="n">bins</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="L-538"><a href="#L-538"><span class="linenos"> 538</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Replica distribution&#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39; (mean=0, var=1)&#39;</span><span class="p">)</span>
+</span><span id="L-539"><a href="#L-539"><span class="linenos"> 539</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-540"><a href="#L-540"><span class="linenos"> 540</span></a>
+</span><span id="L-541"><a href="#L-541"><span class="linenos"> 541</span></a>    <span class="k">def</span> <span class="nf">plot_history</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expand</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="L-542"><a href="#L-542"><span class="linenos"> 542</span></a>        <span class="sd">&quot;&quot;&quot;Plot derived Monte Carlo history for each ensemble</span>
+</span><span id="L-543"><a href="#L-543"><span class="linenos"> 543</span></a>
+</span><span id="L-544"><a href="#L-544"><span class="linenos"> 544</span></a><span class="sd">        Parameters</span>
+</span><span id="L-545"><a href="#L-545"><span class="linenos"> 545</span></a><span class="sd">        ----------</span>
+</span><span id="L-546"><a href="#L-546"><span class="linenos"> 546</span></a><span class="sd">        expand : bool</span>
+</span><span id="L-547"><a href="#L-547"><span class="linenos"> 547</span></a><span class="sd">            show expanded history for irregular Monte Carlo chains (default: True).</span>
+</span><span id="L-548"><a href="#L-548"><span class="linenos"> 548</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-549"><a href="#L-549"><span class="linenos"> 549</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="L-550"><a href="#L-550"><span class="linenos"> 550</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="L-551"><a href="#L-551"><span class="linenos"> 551</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-552"><a href="#L-552"><span class="linenos"> 552</span></a>            <span class="n">tmp</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-553"><a href="#L-553"><span class="linenos"> 553</span></a>            <span class="n">tmp_expanded</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-554"><a href="#L-554"><span class="linenos"> 554</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="L-555"><a href="#L-555"><span class="linenos"> 555</span></a>                <span class="n">tmp</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="L-556"><a href="#L-556"><span class="linenos"> 556</span></a>                <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
+</span><span id="L-557"><a href="#L-557"><span class="linenos"> 557</span></a>                    <span class="n">tmp_expanded</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_expand_deltas</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="L-558"><a href="#L-558"><span class="linenos"> 558</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-559"><a href="#L-559"><span class="linenos"> 559</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-560"><a href="#L-560"><span class="linenos"> 560</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="L-561"><a href="#L-561"><span class="linenos"> 561</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
+</span><span id="L-562"><a href="#L-562"><span class="linenos"> 562</span></a>            <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">e_N</span><span class="p">)</span>
+</span><span id="L-563"><a href="#L-563"><span class="linenos"> 563</span></a>            <span class="n">y_test</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="L-564"><a href="#L-564"><span class="linenos"> 564</span></a>            <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
+</span><span id="L-565"><a href="#L-565"><span class="linenos"> 565</span></a>                <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="L-566"><a href="#L-566"><span class="linenos"> 566</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-567"><a href="#L-567"><span class="linenos"> 567</span></a>                <span class="n">y</span> <span class="o">=</span> <span class="n">y_test</span>
+</span><span id="L-568"><a href="#L-568"><span class="linenos"> 568</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+</span><span id="L-569"><a href="#L-569"><span class="linenos"> 569</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">e_N</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="L-570"><a href="#L-570"><span class="linenos"> 570</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">skew: </span><span class="si">{</span><span class="n">skew</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">skewtest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">), kurtosis: </span><span class="si">{</span><span class="n">kurtosis</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">kurtosistest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">)&#39;</span><span class="p">)</span>
+</span><span id="L-571"><a href="#L-571"><span class="linenos"> 571</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-572"><a href="#L-572"><span class="linenos"> 572</span></a>
+</span><span id="L-573"><a href="#L-573"><span class="linenos"> 573</span></a>    <span class="k">def</span> <span class="nf">plot_piechart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-574"><a href="#L-574"><span class="linenos"> 574</span></a>        <span class="sd">&quot;&quot;&quot;Plot piechart which shows the fractional contribution of each</span>
+</span><span id="L-575"><a href="#L-575"><span class="linenos"> 575</span></a><span class="sd">        ensemble to the error and returns a dictionary containing the fractions.&quot;&quot;&quot;</span>
+</span><span id="L-576"><a href="#L-576"><span class="linenos"> 576</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="L-577"><a href="#L-577"><span class="linenos"> 577</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="L-578"><a href="#L-578"><span class="linenos"> 578</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
+</span><span id="L-579"><a href="#L-579"><span class="linenos"> 579</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error is 0.0&#39;</span><span class="p">)</span>
+</span><span id="L-580"><a href="#L-580"><span class="linenos"> 580</span></a>        <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
+</span><span id="L-581"><a href="#L-581"><span class="linenos"> 581</span></a>        <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="L-582"><a href="#L-582"><span class="linenos"> 582</span></a>        <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+</span><span id="L-583"><a href="#L-583"><span class="linenos"> 583</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">pie</span><span class="p">(</span><span class="n">sizes</span><span class="p">,</span> <span class="n">labels</span><span class="o">=</span><span class="n">labels</span><span class="p">,</span> <span class="n">startangle</span><span class="o">=</span><span class="mi">90</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="L-584"><a href="#L-584"><span class="linenos"> 584</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">axis</span><span class="p">(</span><span class="s1">&#39;equal&#39;</span><span class="p">)</span>
+</span><span id="L-585"><a href="#L-585"><span class="linenos"> 585</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-586"><a href="#L-586"><span class="linenos"> 586</span></a>
+</span><span id="L-587"><a href="#L-587"><span class="linenos"> 587</span></a>        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">,</span> <span class="n">sizes</span><span class="p">))</span>
+</span><span id="L-588"><a href="#L-588"><span class="linenos"> 588</span></a>
+</span><span id="L-589"><a href="#L-589"><span class="linenos"> 589</span></a>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-590"><a href="#L-590"><span class="linenos"> 590</span></a>        <span class="sd">&quot;&quot;&quot;Dump the Obs to a file &#39;name&#39; of chosen format.</span>
+</span><span id="L-591"><a href="#L-591"><span class="linenos"> 591</span></a>
+</span><span id="L-592"><a href="#L-592"><span class="linenos"> 592</span></a><span class="sd">        Parameters</span>
+</span><span id="L-593"><a href="#L-593"><span class="linenos"> 593</span></a><span class="sd">        ----------</span>
+</span><span id="L-594"><a href="#L-594"><span class="linenos"> 594</span></a><span class="sd">        filename : str</span>
+</span><span id="L-595"><a href="#L-595"><span class="linenos"> 595</span></a><span class="sd">            name of the file to be saved.</span>
+</span><span id="L-596"><a href="#L-596"><span class="linenos"> 596</span></a><span class="sd">        datatype : str</span>
+</span><span id="L-597"><a href="#L-597"><span class="linenos"> 597</span></a><span class="sd">            Format of the exported file. Supported formats include</span>
+</span><span id="L-598"><a href="#L-598"><span class="linenos"> 598</span></a><span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
+</span><span id="L-599"><a href="#L-599"><span class="linenos"> 599</span></a><span class="sd">        description : str</span>
+</span><span id="L-600"><a href="#L-600"><span class="linenos"> 600</span></a><span class="sd">            Description for output file, only relevant for json.gz format.</span>
+</span><span id="L-601"><a href="#L-601"><span class="linenos"> 601</span></a><span class="sd">        path : str</span>
+</span><span id="L-602"><a href="#L-602"><span class="linenos"> 602</span></a><span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="L-603"><a href="#L-603"><span class="linenos"> 603</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-604"><a href="#L-604"><span class="linenos"> 604</span></a>        <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-605"><a href="#L-605"><span class="linenos"> 605</span></a>            <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
+</span><span id="L-606"><a href="#L-606"><span class="linenos"> 606</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-607"><a href="#L-607"><span class="linenos"> 607</span></a>            <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
+</span><span id="L-608"><a href="#L-608"><span class="linenos"> 608</span></a>
+</span><span id="L-609"><a href="#L-609"><span class="linenos"> 609</span></a>        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
+</span><span id="L-610"><a href="#L-610"><span class="linenos"> 610</span></a>            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
+</span><span id="L-611"><a href="#L-611"><span class="linenos"> 611</span></a>            <span class="n">dump_to_json</span><span class="p">([</span><span class="bp">self</span><span class="p">],</span> <span class="n">file_name</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">)</span>
+</span><span id="L-612"><a href="#L-612"><span class="linenos"> 612</span></a>        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
+</span><span id="L-613"><a href="#L-613"><span class="linenos"> 613</span></a>            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
+</span><span id="L-614"><a href="#L-614"><span class="linenos"> 614</span></a>                <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
+</span><span id="L-615"><a href="#L-615"><span class="linenos"> 615</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-616"><a href="#L-616"><span class="linenos"> 616</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
+</span><span id="L-617"><a href="#L-617"><span class="linenos"> 617</span></a>
+</span><span id="L-618"><a href="#L-618"><span class="linenos"> 618</span></a>    <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-619"><a href="#L-619"><span class="linenos"> 619</span></a>        <span class="sd">&quot;&quot;&quot;Export jackknife samples from the Obs</span>
+</span><span id="L-620"><a href="#L-620"><span class="linenos"> 620</span></a>
+</span><span id="L-621"><a href="#L-621"><span class="linenos"> 621</span></a><span class="sd">        Returns</span>
+</span><span id="L-622"><a href="#L-622"><span class="linenos"> 622</span></a><span class="sd">        -------</span>
+</span><span id="L-623"><a href="#L-623"><span class="linenos"> 623</span></a><span class="sd">        numpy.ndarray</span>
+</span><span id="L-624"><a href="#L-624"><span class="linenos"> 624</span></a><span class="sd">            Returns a numpy array of length N + 1 where N is the number of samples</span>
+</span><span id="L-625"><a href="#L-625"><span class="linenos"> 625</span></a><span class="sd">            for the given ensemble and replicum. The zeroth entry of the array contains</span>
+</span><span id="L-626"><a href="#L-626"><span class="linenos"> 626</span></a><span class="sd">            the mean value of the Obs, entries 1 to N contain the N jackknife samples</span>
+</span><span id="L-627"><a href="#L-627"><span class="linenos"> 627</span></a><span class="sd">            derived from the Obs. The current implementation only works for observables</span>
+</span><span id="L-628"><a href="#L-628"><span class="linenos"> 628</span></a><span class="sd">            defined on exactly one ensemble and replicum. The derived jackknife samples</span>
+</span><span id="L-629"><a href="#L-629"><span class="linenos"> 629</span></a><span class="sd">            should agree with samples from a full jackknife analysis up to O(1/N).</span>
+</span><span id="L-630"><a href="#L-630"><span class="linenos"> 630</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-631"><a href="#L-631"><span class="linenos"> 631</span></a>
+</span><span id="L-632"><a href="#L-632"><span class="linenos"> 632</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-633"><a href="#L-633"><span class="linenos"> 633</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;export_jackknife&#39; is only implemented for Obs defined on one ensemble and replicum.&quot;</span><span class="p">)</span>
+</span><span id="L-634"><a href="#L-634"><span class="linenos"> 634</span></a>
+</span><span id="L-635"><a href="#L-635"><span class="linenos"> 635</span></a>        <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-636"><a href="#L-636"><span class="linenos"> 636</span></a>        <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-637"><a href="#L-637"><span class="linenos"> 637</span></a>        <span class="n">n</span> <span class="o">=</span> <span class="n">full_data</span><span class="o">.</span><span class="n">size</span>
+</span><span id="L-638"><a href="#L-638"><span class="linenos"> 638</span></a>        <span class="n">mean</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-639"><a href="#L-639"><span class="linenos"> 639</span></a>        <span class="n">tmp_jacks</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-640"><a href="#L-640"><span class="linenos"> 640</span></a>        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="L-641"><a href="#L-641"><span class="linenos"> 641</span></a>        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">mean</span> <span class="o">-</span> <span class="n">full_data</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-642"><a href="#L-642"><span class="linenos"> 642</span></a>        <span class="k">return</span> <span class="n">tmp_jacks</span>
+</span><span id="L-643"><a href="#L-643"><span class="linenos"> 643</span></a>
+</span><span id="L-644"><a href="#L-644"><span class="linenos"> 644</span></a>    <span class="k">def</span> <span class="fm">__float__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-645"><a href="#L-645"><span class="linenos"> 645</span></a>        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-646"><a href="#L-646"><span class="linenos"> 646</span></a>
+</span><span id="L-647"><a href="#L-647"><span class="linenos"> 647</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-648"><a href="#L-648"><span class="linenos"> 648</span></a>        <span class="k">return</span> <span class="s1">&#39;Obs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
+</span><span id="L-649"><a href="#L-649"><span class="linenos"> 649</span></a>
+</span><span id="L-650"><a href="#L-650"><span class="linenos"> 650</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-651"><a href="#L-651"><span class="linenos"> 651</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-652"><a href="#L-652"><span class="linenos"> 652</span></a>            <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-653"><a href="#L-653"><span class="linenos"> 653</span></a>        <span class="n">fexp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">log10</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">))</span>
+</span><span id="L-654"><a href="#L-654"><span class="linenos"> 654</span></a>        <span class="k">if</span> <span class="n">fexp</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-655"><a href="#L-655"><span class="linenos"> 655</span></a>            <span class="k">return</span> <span class="s1">&#39;{:</span><span class="si">{form}</span><span class="s1">}(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">*</span> <span class="mi">10</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="n">fexp</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">form</span><span class="o">=</span><span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">fexp</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;f&#39;</span><span class="p">)</span>
+</span><span id="L-656"><a href="#L-656"><span class="linenos"> 656</span></a>        <span class="k">elif</span> <span class="n">fexp</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-657"><a href="#L-657"><span class="linenos"> 657</span></a>            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.1f}</span><span class="s1">(</span><span class="si">{:1.1f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
+</span><span id="L-658"><a href="#L-658"><span class="linenos"> 658</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-659"><a href="#L-659"><span class="linenos"> 659</span></a>            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.0f}</span><span class="s1">(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
+</span><span id="L-660"><a href="#L-660"><span class="linenos"> 660</span></a>
+</span><span id="L-661"><a href="#L-661"><span class="linenos"> 661</span></a>    <span class="c1"># Overload comparisons</span>
+</span><span id="L-662"><a href="#L-662"><span class="linenos"> 662</span></a>    <span class="k">def</span> <span class="fm">__lt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-663"><a href="#L-663"><span class="linenos"> 663</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;</span> <span class="n">other</span>
+</span><span id="L-664"><a href="#L-664"><span class="linenos"> 664</span></a>
+</span><span id="L-665"><a href="#L-665"><span class="linenos"> 665</span></a>    <span class="k">def</span> <span class="fm">__le__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-666"><a href="#L-666"><span class="linenos"> 666</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;=</span> <span class="n">other</span>
+</span><span id="L-667"><a href="#L-667"><span class="linenos"> 667</span></a>
+</span><span id="L-668"><a href="#L-668"><span class="linenos"> 668</span></a>    <span class="k">def</span> <span class="fm">__gt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-669"><a href="#L-669"><span class="linenos"> 669</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;</span> <span class="n">other</span>
+</span><span id="L-670"><a href="#L-670"><span class="linenos"> 670</span></a>
+</span><span id="L-671"><a href="#L-671"><span class="linenos"> 671</span></a>    <span class="k">def</span> <span class="fm">__ge__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-672"><a href="#L-672"><span class="linenos"> 672</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;=</span> <span class="n">other</span>
+</span><span id="L-673"><a href="#L-673"><span class="linenos"> 673</span></a>
+</span><span id="L-674"><a href="#L-674"><span class="linenos"> 674</span></a>    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-675"><a href="#L-675"><span class="linenos"> 675</span></a>        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
+</span><span id="L-676"><a href="#L-676"><span class="linenos"> 676</span></a>
+</span><span id="L-677"><a href="#L-677"><span class="linenos"> 677</span></a>    <span class="k">def</span> <span class="fm">__ne__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-678"><a href="#L-678"><span class="linenos"> 678</span></a>        <span class="k">return</span> <span class="ow">not</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
+</span><span id="L-679"><a href="#L-679"><span class="linenos"> 679</span></a>
+</span><span id="L-680"><a href="#L-680"><span class="linenos"> 680</span></a>    <span class="c1"># Overload math operations</span>
+</span><span id="L-681"><a href="#L-681"><span class="linenos"> 681</span></a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-682"><a href="#L-682"><span class="linenos"> 682</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-683"><a href="#L-683"><span class="linenos"> 683</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="L-684"><a href="#L-684"><span class="linenos"> 684</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-685"><a href="#L-685"><span class="linenos"> 685</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-686"><a href="#L-686"><span class="linenos"> 686</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">+</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-687"><a href="#L-687"><span class="linenos"> 687</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="L-688"><a href="#L-688"><span class="linenos"> 688</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="L-689"><a href="#L-689"><span class="linenos"> 689</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-690"><a href="#L-690"><span class="linenos"> 690</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-691"><a href="#L-691"><span class="linenos"> 691</span></a>
+</span><span id="L-692"><a href="#L-692"><span class="linenos"> 692</span></a>    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-693"><a href="#L-693"><span class="linenos"> 693</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="L-694"><a href="#L-694"><span class="linenos"> 694</span></a>
+</span><span id="L-695"><a href="#L-695"><span class="linenos"> 695</span></a>    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-696"><a href="#L-696"><span class="linenos"> 696</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-697"><a href="#L-697"><span class="linenos"> 697</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
+</span><span id="L-698"><a href="#L-698"><span class="linenos"> 698</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-699"><a href="#L-699"><span class="linenos"> 699</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-700"><a href="#L-700"><span class="linenos"> 700</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">*</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-701"><a href="#L-701"><span class="linenos"> 701</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="nb">complex</span><span class="p">):</span>
+</span><span id="L-702"><a href="#L-702"><span class="linenos"> 702</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="L-703"><a href="#L-703"><span class="linenos"> 703</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="L-704"><a href="#L-704"><span class="linenos"> 704</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="L-705"><a href="#L-705"><span class="linenos"> 705</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-706"><a href="#L-706"><span class="linenos"> 706</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="p">])</span>
+</span><span id="L-707"><a href="#L-707"><span class="linenos"> 707</span></a>
+</span><span id="L-708"><a href="#L-708"><span class="linenos"> 708</span></a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-709"><a href="#L-709"><span class="linenos"> 709</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
+</span><span id="L-710"><a href="#L-710"><span class="linenos"> 710</span></a>
+</span><span id="L-711"><a href="#L-711"><span class="linenos"> 711</span></a>    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-712"><a href="#L-712"><span class="linenos"> 712</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-713"><a href="#L-713"><span class="linenos"> 713</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-714"><a href="#L-714"><span class="linenos"> 714</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-715"><a href="#L-715"><span class="linenos"> 715</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-716"><a href="#L-716"><span class="linenos"> 716</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">-</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-717"><a href="#L-717"><span class="linenos"> 717</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="L-718"><a href="#L-718"><span class="linenos"> 718</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="L-719"><a href="#L-719"><span class="linenos"> 719</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-720"><a href="#L-720"><span class="linenos"> 720</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="L-721"><a href="#L-721"><span class="linenos"> 721</span></a>
+</span><span id="L-722"><a href="#L-722"><span class="linenos"> 722</span></a>    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-723"><a href="#L-723"><span class="linenos"> 723</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="L-724"><a href="#L-724"><span class="linenos"> 724</span></a>
+</span><span id="L-725"><a href="#L-725"><span class="linenos"> 725</span></a>    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-726"><a href="#L-726"><span class="linenos"> 726</span></a>        <span class="k">return</span> <span class="bp">self</span>
+</span><span id="L-727"><a href="#L-727"><span class="linenos"> 727</span></a>
+</span><span id="L-728"><a href="#L-728"><span class="linenos"> 728</span></a>    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-729"><a href="#L-729"><span class="linenos"> 729</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="L-730"><a href="#L-730"><span class="linenos"> 730</span></a>
+</span><span id="L-731"><a href="#L-731"><span class="linenos"> 731</span></a>    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-732"><a href="#L-732"><span class="linenos"> 732</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-733"><a href="#L-733"><span class="linenos"> 733</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="L-734"><a href="#L-734"><span class="linenos"> 734</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-735"><a href="#L-735"><span class="linenos"> 735</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-736"><a href="#L-736"><span class="linenos"> 736</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">/</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-737"><a href="#L-737"><span class="linenos"> 737</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="L-738"><a href="#L-738"><span class="linenos"> 738</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="L-739"><a href="#L-739"><span class="linenos"> 739</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-740"><a href="#L-740"><span class="linenos"> 740</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-741"><a href="#L-741"><span class="linenos"> 741</span></a>
+</span><span id="L-742"><a href="#L-742"><span class="linenos"> 742</span></a>    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-743"><a href="#L-743"><span class="linenos"> 743</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-744"><a href="#L-744"><span class="linenos"> 744</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="L-745"><a href="#L-745"><span class="linenos"> 745</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-746"><a href="#L-746"><span class="linenos"> 746</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-747"><a href="#L-747"><span class="linenos"> 747</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span> <span class="o">/</span> <span class="bp">self</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-748"><a href="#L-748"><span class="linenos"> 748</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="L-749"><a href="#L-749"><span class="linenos"> 749</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="L-750"><a href="#L-750"><span class="linenos"> 750</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-751"><a href="#L-751"><span class="linenos"> 751</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">y</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">y</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="L-752"><a href="#L-752"><span class="linenos"> 752</span></a>
+</span><span id="L-753"><a href="#L-753"><span class="linenos"> 753</span></a>    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-754"><a href="#L-754"><span class="linenos"> 754</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-755"><a href="#L-755"><span class="linenos"> 755</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="L-756"><a href="#L-756"><span class="linenos"> 756</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-757"><a href="#L-757"><span class="linenos"> 757</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-758"><a href="#L-758"><span class="linenos"> 758</span></a>
+</span><span id="L-759"><a href="#L-759"><span class="linenos"> 759</span></a>    <span class="k">def</span> <span class="fm">__rpow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-760"><a href="#L-760"><span class="linenos"> 760</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-761"><a href="#L-761"><span class="linenos"> 761</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">])</span>
+</span><span id="L-762"><a href="#L-762"><span class="linenos"> 762</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-763"><a href="#L-763"><span class="linenos"> 763</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">y</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-764"><a href="#L-764"><span class="linenos"> 764</span></a>
+</span><span id="L-765"><a href="#L-765"><span class="linenos"> 765</span></a>    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-766"><a href="#L-766"><span class="linenos"> 766</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-767"><a href="#L-767"><span class="linenos"> 767</span></a>
+</span><span id="L-768"><a href="#L-768"><span class="linenos"> 768</span></a>    <span class="c1"># Overload numpy functions</span>
+</span><span id="L-769"><a href="#L-769"><span class="linenos"> 769</span></a>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-770"><a href="#L-770"><span class="linenos"> 770</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-771"><a href="#L-771"><span class="linenos"> 771</span></a>
+</span><span id="L-772"><a href="#L-772"><span class="linenos"> 772</span></a>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-773"><a href="#L-773"><span class="linenos"> 773</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
+</span><span id="L-774"><a href="#L-774"><span class="linenos"> 774</span></a>
+</span><span id="L-775"><a href="#L-775"><span class="linenos"> 775</span></a>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-776"><a href="#L-776"><span class="linenos"> 776</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-777"><a href="#L-777"><span class="linenos"> 777</span></a>
+</span><span id="L-778"><a href="#L-778"><span class="linenos"> 778</span></a>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-779"><a href="#L-779"><span class="linenos"> 779</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-780"><a href="#L-780"><span class="linenos"> 780</span></a>
+</span><span id="L-781"><a href="#L-781"><span class="linenos"> 781</span></a>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-782"><a href="#L-782"><span class="linenos"> 782</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-783"><a href="#L-783"><span class="linenos"> 783</span></a>
+</span><span id="L-784"><a href="#L-784"><span class="linenos"> 784</span></a>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-785"><a href="#L-785"><span class="linenos"> 785</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="L-786"><a href="#L-786"><span class="linenos"> 786</span></a>
+</span><span id="L-787"><a href="#L-787"><span class="linenos"> 787</span></a>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-788"><a href="#L-788"><span class="linenos"> 788</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-789"><a href="#L-789"><span class="linenos"> 789</span></a>
+</span><span id="L-790"><a href="#L-790"><span class="linenos"> 790</span></a>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-791"><a href="#L-791"><span class="linenos"> 791</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-792"><a href="#L-792"><span class="linenos"> 792</span></a>
+</span><span id="L-793"><a href="#L-793"><span class="linenos"> 793</span></a>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-794"><a href="#L-794"><span class="linenos"> 794</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-795"><a href="#L-795"><span class="linenos"> 795</span></a>
+</span><span id="L-796"><a href="#L-796"><span class="linenos"> 796</span></a>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-797"><a href="#L-797"><span class="linenos"> 797</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-798"><a href="#L-798"><span class="linenos"> 798</span></a>
+</span><span id="L-799"><a href="#L-799"><span class="linenos"> 799</span></a>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-800"><a href="#L-800"><span class="linenos"> 800</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="L-801"><a href="#L-801"><span class="linenos"> 801</span></a>
+</span><span id="L-802"><a href="#L-802"><span class="linenos"> 802</span></a>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-803"><a href="#L-803"><span class="linenos"> 803</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="L-804"><a href="#L-804"><span class="linenos"> 804</span></a>
+</span><span id="L-805"><a href="#L-805"><span class="linenos"> 805</span></a>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-806"><a href="#L-806"><span class="linenos"> 806</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-807"><a href="#L-807"><span class="linenos"> 807</span></a>
+</span><span id="L-808"><a href="#L-808"><span class="linenos"> 808</span></a>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-809"><a href="#L-809"><span class="linenos"> 809</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-810"><a href="#L-810"><span class="linenos"> 810</span></a>
+</span><span id="L-811"><a href="#L-811"><span class="linenos"> 811</span></a>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-812"><a href="#L-812"><span class="linenos"> 812</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="L-813"><a href="#L-813"><span class="linenos"> 813</span></a>
+</span><span id="L-814"><a href="#L-814"><span class="linenos"> 814</span></a>
+</span><span id="L-815"><a href="#L-815"><span class="linenos"> 815</span></a><span class="k">class</span> <span class="nc">CObs</span><span class="p">:</span>
+</span><span id="L-816"><a href="#L-816"><span class="linenos"> 816</span></a>    <span class="sd">&quot;&quot;&quot;Class for a complex valued observable.&quot;&quot;&quot;</span>
+</span><span id="L-817"><a href="#L-817"><span class="linenos"> 817</span></a>    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;_real&#39;</span><span class="p">,</span> <span class="s1">&#39;_imag&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">]</span>
+</span><span id="L-818"><a href="#L-818"><span class="linenos"> 818</span></a>
+</span><span id="L-819"><a href="#L-819"><span class="linenos"> 819</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
+</span><span id="L-820"><a href="#L-820"><span class="linenos"> 820</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_real</span> <span class="o">=</span> <span class="n">real</span>
+</span><span id="L-821"><a href="#L-821"><span class="linenos"> 821</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span> <span class="o">=</span> <span class="n">imag</span>
+</span><span id="L-822"><a href="#L-822"><span class="linenos"> 822</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="L-823"><a href="#L-823"><span class="linenos"> 823</span></a>
+</span><span id="L-824"><a href="#L-824"><span class="linenos"> 824</span></a>    <span class="nd">@property</span>
+</span><span id="L-825"><a href="#L-825"><span class="linenos"> 825</span></a>    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-826"><a href="#L-826"><span class="linenos"> 826</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_real</span>
+</span><span id="L-827"><a href="#L-827"><span class="linenos"> 827</span></a>
+</span><span id="L-828"><a href="#L-828"><span class="linenos"> 828</span></a>    <span class="nd">@property</span>
+</span><span id="L-829"><a href="#L-829"><span class="linenos"> 829</span></a>    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-830"><a href="#L-830"><span class="linenos"> 830</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span>
+</span><span id="L-831"><a href="#L-831"><span class="linenos"> 831</span></a>
+</span><span id="L-832"><a href="#L-832"><span class="linenos"> 832</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-833"><a href="#L-833"><span class="linenos"> 833</span></a>        <span class="sd">&quot;&quot;&quot;Executes the gamma_method for the real and the imaginary part.&quot;&quot;&quot;</span>
+</span><span id="L-834"><a href="#L-834"><span class="linenos"> 834</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-835"><a href="#L-835"><span class="linenos"> 835</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-836"><a href="#L-836"><span class="linenos"> 836</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="L-837"><a href="#L-837"><span class="linenos"> 837</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-838"><a href="#L-838"><span class="linenos"> 838</span></a>
+</span><span id="L-839"><a href="#L-839"><span class="linenos"> 839</span></a>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-840"><a href="#L-840"><span class="linenos"> 840</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether both real and imaginary part are zero within machine precision.&quot;&quot;&quot;</span>
+</span><span id="L-841"><a href="#L-841"><span class="linenos"> 841</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="mf">0.0</span>
+</span><span id="L-842"><a href="#L-842"><span class="linenos"> 842</span></a>
+</span><span id="L-843"><a href="#L-843"><span class="linenos"> 843</span></a>    <span class="k">def</span> <span class="nf">conjugate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-844"><a href="#L-844"><span class="linenos"> 844</span></a>        <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="L-845"><a href="#L-845"><span class="linenos"> 845</span></a>
+</span><span id="L-846"><a href="#L-846"><span class="linenos"> 846</span></a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-847"><a href="#L-847"><span class="linenos"> 847</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-848"><a href="#L-848"><span class="linenos"> 848</span></a>            <span class="k">return</span> <span class="n">other</span> <span class="o">+</span> <span class="bp">self</span>
+</span><span id="L-849"><a href="#L-849"><span class="linenos"> 849</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="L-850"><a href="#L-850"><span class="linenos"> 850</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span>
+</span><span id="L-851"><a href="#L-851"><span class="linenos"> 851</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="L-852"><a href="#L-852"><span class="linenos"> 852</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-853"><a href="#L-853"><span class="linenos"> 853</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="L-854"><a href="#L-854"><span class="linenos"> 854</span></a>
+</span><span id="L-855"><a href="#L-855"><span class="linenos"> 855</span></a>    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="L-856"><a href="#L-856"><span class="linenos"> 856</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="L-857"><a href="#L-857"><span class="linenos"> 857</span></a>
+</span><span id="L-858"><a href="#L-858"><span class="linenos"> 858</span></a>    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-859"><a href="#L-859"><span class="linenos"> 859</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-860"><a href="#L-860"><span class="linenos"> 860</span></a>            <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="n">other</span> <span class="o">-</span> <span class="bp">self</span><span class="p">)</span>
+</span><span id="L-861"><a href="#L-861"><span class="linenos"> 861</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="L-862"><a href="#L-862"><span class="linenos"> 862</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="L-863"><a href="#L-863"><span class="linenos"> 863</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-864"><a href="#L-864"><span class="linenos"> 864</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="L-865"><a href="#L-865"><span class="linenos"> 865</span></a>
+</span><span id="L-866"><a href="#L-866"><span class="linenos"> 866</span></a>    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-867"><a href="#L-867"><span class="linenos"> 867</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span>
+</span><span id="L-868"><a href="#L-868"><span class="linenos"> 868</span></a>
+</span><span id="L-869"><a href="#L-869"><span class="linenos"> 869</span></a>    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-870"><a href="#L-870"><span class="linenos"> 870</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-871"><a href="#L-871"><span class="linenos"> 871</span></a>            <span class="k">return</span> <span class="n">other</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="L-872"><a href="#L-872"><span class="linenos"> 872</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="L-873"><a href="#L-873"><span class="linenos"> 873</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">]):</span>
+</span><span id="L-874"><a href="#L-874"><span class="linenos"> 874</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
+</span><span id="L-875"><a href="#L-875"><span class="linenos"> 875</span></a>                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
+</span><span id="L-876"><a href="#L-876"><span class="linenos"> 876</span></a>                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">]),</span>
+</span><span id="L-877"><a href="#L-877"><span class="linenos"> 877</span></a>                            <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
+</span><span id="L-878"><a href="#L-878"><span class="linenos"> 878</span></a>                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
+</span><span id="L-879"><a href="#L-879"><span class="linenos"> 879</span></a>                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">]))</span>
+</span><span id="L-880"><a href="#L-880"><span class="linenos"> 880</span></a>            <span class="k">elif</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-881"><a href="#L-881"><span class="linenos"> 881</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span>
+</span><span id="L-882"><a href="#L-882"><span class="linenos"> 882</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="L-883"><a href="#L-883"><span class="linenos"> 883</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-884"><a href="#L-884"><span class="linenos"> 884</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span>
+</span><span id="L-885"><a href="#L-885"><span class="linenos"> 885</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-886"><a href="#L-886"><span class="linenos"> 886</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="p">)</span>
+</span><span id="L-887"><a href="#L-887"><span class="linenos"> 887</span></a>
+</span><span id="L-888"><a href="#L-888"><span class="linenos"> 888</span></a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-889"><a href="#L-889"><span class="linenos"> 889</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">other</span>
+</span><span id="L-890"><a href="#L-890"><span class="linenos"> 890</span></a>
+</span><span id="L-891"><a href="#L-891"><span class="linenos"> 891</span></a>    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-892"><a href="#L-892"><span class="linenos"> 892</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="L-893"><a href="#L-893"><span class="linenos"> 893</span></a>            <span class="k">return</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="n">other</span> <span class="o">/</span> <span class="bp">self</span><span class="p">)</span>
+</span><span id="L-894"><a href="#L-894"><span class="linenos"> 894</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="L-895"><a href="#L-895"><span class="linenos"> 895</span></a>            <span class="n">r</span> <span class="o">=</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="L-896"><a href="#L-896"><span class="linenos"> 896</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
+</span><span id="L-897"><a href="#L-897"><span class="linenos"> 897</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-898"><a href="#L-898"><span class="linenos"> 898</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">/</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">/</span> <span class="n">other</span><span class="p">)</span>
+</span><span id="L-899"><a href="#L-899"><span class="linenos"> 899</span></a>
+</span><span id="L-900"><a href="#L-900"><span class="linenos"> 900</span></a>    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-901"><a href="#L-901"><span class="linenos"> 901</span></a>        <span class="n">r</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="L-902"><a href="#L-902"><span class="linenos"> 902</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="L-903"><a href="#L-903"><span class="linenos"> 903</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
+</span><span id="L-904"><a href="#L-904"><span class="linenos"> 904</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-905"><a href="#L-905"><span class="linenos"> 905</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
+</span><span id="L-906"><a href="#L-906"><span class="linenos"> 906</span></a>
+</span><span id="L-907"><a href="#L-907"><span class="linenos"> 907</span></a>    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-908"><a href="#L-908"><span class="linenos"> 908</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">**</span><span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="L-909"><a href="#L-909"><span class="linenos"> 909</span></a>
+</span><span id="L-910"><a href="#L-910"><span class="linenos"> 910</span></a>    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-911"><a href="#L-911"><span class="linenos"> 911</span></a>        <span class="k">return</span> <span class="bp">self</span>
+</span><span id="L-912"><a href="#L-912"><span class="linenos"> 912</span></a>
+</span><span id="L-913"><a href="#L-913"><span class="linenos"> 913</span></a>    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-914"><a href="#L-914"><span class="linenos"> 914</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="L-915"><a href="#L-915"><span class="linenos"> 915</span></a>
+</span><span id="L-916"><a href="#L-916"><span class="linenos"> 916</span></a>    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="L-917"><a href="#L-917"><span class="linenos"> 917</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span>
+</span><span id="L-918"><a href="#L-918"><span class="linenos"> 918</span></a>
+</span><span id="L-919"><a href="#L-919"><span class="linenos"> 919</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-920"><a href="#L-920"><span class="linenos"> 920</span></a>        <span class="k">return</span> <span class="s1">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">&gt;=</span> <span class="mf">0.0</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;+&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;j)&#39;</span>
+</span><span id="L-921"><a href="#L-921"><span class="linenos"> 921</span></a>
+</span><span id="L-922"><a href="#L-922"><span class="linenos"> 922</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="L-923"><a href="#L-923"><span class="linenos"> 923</span></a>        <span class="k">return</span> <span class="s1">&#39;CObs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
+</span><span id="L-924"><a href="#L-924"><span class="linenos"> 924</span></a>
+</span><span id="L-925"><a href="#L-925"><span class="linenos"> 925</span></a>
+</span><span id="L-926"><a href="#L-926"><span class="linenos"> 926</span></a><span class="k">def</span> <span class="nf">_expand_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">):</span>
+</span><span id="L-927"><a href="#L-927"><span class="linenos"> 927</span></a>    <span class="sd">&quot;&quot;&quot;Expand deltas defined on idx to a regular, contiguous range, where holes are filled by 0.</span>
+</span><span id="L-928"><a href="#L-928"><span class="linenos"> 928</span></a><span class="sd">       If idx is of type range, the deltas are not changed</span>
+</span><span id="L-929"><a href="#L-929"><span class="linenos"> 929</span></a>
+</span><span id="L-930"><a href="#L-930"><span class="linenos"> 930</span></a><span class="sd">    Parameters</span>
+</span><span id="L-931"><a href="#L-931"><span class="linenos"> 931</span></a><span class="sd">    ----------</span>
+</span><span id="L-932"><a href="#L-932"><span class="linenos"> 932</span></a><span class="sd">    deltas : list</span>
+</span><span id="L-933"><a href="#L-933"><span class="linenos"> 933</span></a><span class="sd">        List of fluctuations</span>
+</span><span id="L-934"><a href="#L-934"><span class="linenos"> 934</span></a><span class="sd">    idx : list</span>
+</span><span id="L-935"><a href="#L-935"><span class="linenos"> 935</span></a><span class="sd">        List or range of configs on which the deltas are defined, has to be sorted in ascending order.</span>
+</span><span id="L-936"><a href="#L-936"><span class="linenos"> 936</span></a><span class="sd">    shape : int</span>
+</span><span id="L-937"><a href="#L-937"><span class="linenos"> 937</span></a><span class="sd">        Number of configs in idx.</span>
+</span><span id="L-938"><a href="#L-938"><span class="linenos"> 938</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-939"><a href="#L-939"><span class="linenos"> 939</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="L-940"><a href="#L-940"><span class="linenos"> 940</span></a>        <span class="k">return</span> <span class="n">deltas</span>
+</span><span id="L-941"><a href="#L-941"><span class="linenos"> 941</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-942"><a href="#L-942"><span class="linenos"> 942</span></a>        <span class="n">ret</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-943"><a href="#L-943"><span class="linenos"> 943</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">shape</span><span class="p">):</span>
+</span><span id="L-944"><a href="#L-944"><span class="linenos"> 944</span></a>            <span class="n">ret</span><span class="p">[</span><span class="n">idx</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-945"><a href="#L-945"><span class="linenos"> 945</span></a>        <span class="k">return</span> <span class="n">ret</span>
+</span><span id="L-946"><a href="#L-946"><span class="linenos"> 946</span></a>
+</span><span id="L-947"><a href="#L-947"><span class="linenos"> 947</span></a>
+</span><span id="L-948"><a href="#L-948"><span class="linenos"> 948</span></a><span class="k">def</span> <span class="nf">_merge_idx</span><span class="p">(</span><span class="n">idl</span><span class="p">):</span>
+</span><span id="L-949"><a href="#L-949"><span class="linenos"> 949</span></a>    <span class="sd">&quot;&quot;&quot;Returns the union of all lists in idl as sorted list</span>
+</span><span id="L-950"><a href="#L-950"><span class="linenos"> 950</span></a>
+</span><span id="L-951"><a href="#L-951"><span class="linenos"> 951</span></a><span class="sd">    Parameters</span>
+</span><span id="L-952"><a href="#L-952"><span class="linenos"> 952</span></a><span class="sd">    ----------</span>
+</span><span id="L-953"><a href="#L-953"><span class="linenos"> 953</span></a><span class="sd">    idl : list</span>
+</span><span id="L-954"><a href="#L-954"><span class="linenos"> 954</span></a><span class="sd">        List of lists or ranges.</span>
+</span><span id="L-955"><a href="#L-955"><span class="linenos"> 955</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-956"><a href="#L-956"><span class="linenos"> 956</span></a>
+</span><span id="L-957"><a href="#L-957"><span class="linenos"> 957</span></a>    <span class="c1"># Use groupby to efficiently check whether all elements of idl are identical</span>
+</span><span id="L-958"><a href="#L-958"><span class="linenos"> 958</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="L-959"><a href="#L-959"><span class="linenos"> 959</span></a>        <span class="n">g</span> <span class="o">=</span> <span class="n">groupby</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span>
+</span><span id="L-960"><a href="#L-960"><span class="linenos"> 960</span></a>        <span class="k">if</span> <span class="nb">next</span><span class="p">(</span><span class="n">g</span><span class="p">,</span> <span class="kc">True</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="nb">next</span><span class="p">(</span><span class="n">g</span><span class="p">,</span> <span class="kc">False</span><span class="p">):</span>
+</span><span id="L-961"><a href="#L-961"><span class="linenos"> 961</span></a>            <span class="k">return</span> <span class="n">idl</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-962"><a href="#L-962"><span class="linenos"> 962</span></a>    <span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
+</span><span id="L-963"><a href="#L-963"><span class="linenos"> 963</span></a>        <span class="k">pass</span>
+</span><span id="L-964"><a href="#L-964"><span class="linenos"> 964</span></a>
+</span><span id="L-965"><a href="#L-965"><span class="linenos"> 965</span></a>    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">([</span><span class="nb">type</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">]):</span>
+</span><span id="L-966"><a href="#L-966"><span class="linenos"> 966</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">]))</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-967"><a href="#L-967"><span class="linenos"> 967</span></a>            <span class="n">idstart</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([</span><span class="n">idx</span><span class="o">.</span><span class="n">start</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">])</span>
+</span><span id="L-968"><a href="#L-968"><span class="linenos"> 968</span></a>            <span class="n">idstop</span> <span class="o">=</span> <span class="nb">max</span><span class="p">([</span><span class="n">idx</span><span class="o">.</span><span class="n">stop</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">])</span>
+</span><span id="L-969"><a href="#L-969"><span class="linenos"> 969</span></a>            <span class="n">idstep</span> <span class="o">=</span> <span class="nb">min</span><span class="p">([</span><span class="n">idx</span><span class="o">.</span><span class="n">step</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="n">idl</span><span class="p">])</span>
+</span><span id="L-970"><a href="#L-970"><span class="linenos"> 970</span></a>            <span class="k">return</span> <span class="nb">range</span><span class="p">(</span><span class="n">idstart</span><span class="p">,</span> <span class="n">idstop</span><span class="p">,</span> <span class="n">idstep</span><span class="p">)</span>
+</span><span id="L-971"><a href="#L-971"><span class="linenos"> 971</span></a>
+</span><span id="L-972"><a href="#L-972"><span class="linenos"> 972</span></a>    <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">()</span><span class="o">.</span><span class="n">union</span><span class="p">(</span><span class="o">*</span><span class="n">idl</span><span class="p">))</span>
+</span><span id="L-973"><a href="#L-973"><span class="linenos"> 973</span></a>
+</span><span id="L-974"><a href="#L-974"><span class="linenos"> 974</span></a>
+</span><span id="L-975"><a href="#L-975"><span class="linenos"> 975</span></a><span class="k">def</span> <span class="nf">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">new_idx</span><span class="p">):</span>
+</span><span id="L-976"><a href="#L-976"><span class="linenos"> 976</span></a>    <span class="sd">&quot;&quot;&quot;Expand deltas defined on idx to the list of configs that is defined by new_idx.</span>
+</span><span id="L-977"><a href="#L-977"><span class="linenos"> 977</span></a><span class="sd">       New, empty entries are filled by 0. If idx and new_idx are of type range, the smallest</span>
+</span><span id="L-978"><a href="#L-978"><span class="linenos"> 978</span></a><span class="sd">       common divisor of the step sizes is used as new step size.</span>
+</span><span id="L-979"><a href="#L-979"><span class="linenos"> 979</span></a>
+</span><span id="L-980"><a href="#L-980"><span class="linenos"> 980</span></a><span class="sd">    Parameters</span>
+</span><span id="L-981"><a href="#L-981"><span class="linenos"> 981</span></a><span class="sd">    ----------</span>
+</span><span id="L-982"><a href="#L-982"><span class="linenos"> 982</span></a><span class="sd">    deltas : list</span>
+</span><span id="L-983"><a href="#L-983"><span class="linenos"> 983</span></a><span class="sd">        List of fluctuations</span>
+</span><span id="L-984"><a href="#L-984"><span class="linenos"> 984</span></a><span class="sd">    idx : list</span>
+</span><span id="L-985"><a href="#L-985"><span class="linenos"> 985</span></a><span class="sd">        List or range of configs on which the deltas are defined.</span>
+</span><span id="L-986"><a href="#L-986"><span class="linenos"> 986</span></a><span class="sd">        Has to be a subset of new_idx and has to be sorted in ascending order.</span>
+</span><span id="L-987"><a href="#L-987"><span class="linenos"> 987</span></a><span class="sd">    shape : list</span>
+</span><span id="L-988"><a href="#L-988"><span class="linenos"> 988</span></a><span class="sd">        Number of configs in idx.</span>
+</span><span id="L-989"><a href="#L-989"><span class="linenos"> 989</span></a><span class="sd">    new_idx : list</span>
+</span><span id="L-990"><a href="#L-990"><span class="linenos"> 990</span></a><span class="sd">        List of configs that defines the new range, has to be sorted in ascending order.</span>
+</span><span id="L-991"><a href="#L-991"><span class="linenos"> 991</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-992"><a href="#L-992"><span class="linenos"> 992</span></a>
+</span><span id="L-993"><a href="#L-993"><span class="linenos"> 993</span></a>    <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">new_idx</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span><span class="p">:</span>
+</span><span id="L-994"><a href="#L-994"><span class="linenos"> 994</span></a>        <span class="k">if</span> <span class="n">idx</span> <span class="o">==</span> <span class="n">new_idx</span><span class="p">:</span>
+</span><span id="L-995"><a href="#L-995"><span class="linenos"> 995</span></a>            <span class="k">return</span> <span class="n">deltas</span>
+</span><span id="L-996"><a href="#L-996"><span class="linenos"> 996</span></a>    <span class="n">ret</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">new_idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">new_idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="L-997"><a href="#L-997"><span class="linenos"> 997</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">shape</span><span class="p">):</span>
+</span><span id="L-998"><a href="#L-998"><span class="linenos"> 998</span></a>        <span class="n">ret</span><span class="p">[</span><span class="n">idx</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">new_idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="o">=</span> <span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">]</span>
+</span><span id="L-999"><a href="#L-999"><span class="linenos"> 999</span></a>    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">ret</span><span class="p">[</span><span class="n">new_idx</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">-</span> <span class="n">new_idx</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">new_idx</span><span class="p">))])</span>
+</span><span id="L-1000"><a href="#L-1000"><span class="linenos">1000</span></a>
+</span><span id="L-1001"><a href="#L-1001"><span class="linenos">1001</span></a>
+</span><span id="L-1002"><a href="#L-1002"><span class="linenos">1002</span></a><span class="k">def</span> <span class="nf">_filter_zeroes</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">eps</span><span class="o">=</span><span class="n">Obs</span><span class="o">.</span><span class="n">filter_eps</span><span class="p">):</span>
+</span><span id="L-1003"><a href="#L-1003"><span class="linenos">1003</span></a>    <span class="sd">&quot;&quot;&quot;Filter out all configurations with vanishing fluctuation such that they do not</span>
+</span><span id="L-1004"><a href="#L-1004"><span class="linenos">1004</span></a><span class="sd">       contribute to the error estimate anymore. Returns the new deltas and</span>
+</span><span id="L-1005"><a href="#L-1005"><span class="linenos">1005</span></a><span class="sd">       idx according to the filtering.</span>
+</span><span id="L-1006"><a href="#L-1006"><span class="linenos">1006</span></a><span class="sd">       A fluctuation is considered to be vanishing, if it is smaller than eps times</span>
+</span><span id="L-1007"><a href="#L-1007"><span class="linenos">1007</span></a><span class="sd">       the mean of the absolute values of all deltas in one list.</span>
+</span><span id="L-1008"><a href="#L-1008"><span class="linenos">1008</span></a>
+</span><span id="L-1009"><a href="#L-1009"><span class="linenos">1009</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1010"><a href="#L-1010"><span class="linenos">1010</span></a><span class="sd">    ----------</span>
+</span><span id="L-1011"><a href="#L-1011"><span class="linenos">1011</span></a><span class="sd">    deltas : list</span>
+</span><span id="L-1012"><a href="#L-1012"><span class="linenos">1012</span></a><span class="sd">        List of fluctuations</span>
+</span><span id="L-1013"><a href="#L-1013"><span class="linenos">1013</span></a><span class="sd">    idx : list</span>
+</span><span id="L-1014"><a href="#L-1014"><span class="linenos">1014</span></a><span class="sd">        List or ranges of configs on which the deltas are defined.</span>
+</span><span id="L-1015"><a href="#L-1015"><span class="linenos">1015</span></a><span class="sd">    eps : float</span>
+</span><span id="L-1016"><a href="#L-1016"><span class="linenos">1016</span></a><span class="sd">        Prefactor that enters the filter criterion.</span>
+</span><span id="L-1017"><a href="#L-1017"><span class="linenos">1017</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1018"><a href="#L-1018"><span class="linenos">1018</span></a>    <span class="n">new_deltas</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1019"><a href="#L-1019"><span class="linenos">1019</span></a>    <span class="n">new_idx</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1020"><a href="#L-1020"><span class="linenos">1020</span></a>    <span class="n">maxd</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">fabs</span><span class="p">(</span><span class="n">deltas</span><span class="p">))</span>
+</span><span id="L-1021"><a href="#L-1021"><span class="linenos">1021</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)):</span>
+</span><span id="L-1022"><a href="#L-1022"><span class="linenos">1022</span></a>        <span class="k">if</span> <span class="nb">abs</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">&gt;</span> <span class="n">eps</span> <span class="o">*</span> <span class="n">maxd</span><span class="p">:</span>
+</span><span id="L-1023"><a href="#L-1023"><span class="linenos">1023</span></a>            <span class="n">new_deltas</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-1024"><a href="#L-1024"><span class="linenos">1024</span></a>            <span class="n">new_idx</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+</span><span id="L-1025"><a href="#L-1025"><span class="linenos">1025</span></a>    <span class="k">if</span> <span class="n">new_idx</span><span class="p">:</span>
+</span><span id="L-1026"><a href="#L-1026"><span class="linenos">1026</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">new_deltas</span><span class="p">),</span> <span class="n">new_idx</span>
+</span><span id="L-1027"><a href="#L-1027"><span class="linenos">1027</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1028"><a href="#L-1028"><span class="linenos">1028</span></a>        <span class="k">return</span> <span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span>
+</span><span id="L-1029"><a href="#L-1029"><span class="linenos">1029</span></a>
+</span><span id="L-1030"><a href="#L-1030"><span class="linenos">1030</span></a>
+</span><span id="L-1031"><a href="#L-1031"><span class="linenos">1031</span></a><span class="k">def</span> <span class="nf">derived_observable</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-1032"><a href="#L-1032"><span class="linenos">1032</span></a>    <span class="sd">&quot;&quot;&quot;Construct a derived Obs according to func(data, **kwargs) using automatic differentiation.</span>
+</span><span id="L-1033"><a href="#L-1033"><span class="linenos">1033</span></a>
+</span><span id="L-1034"><a href="#L-1034"><span class="linenos">1034</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1035"><a href="#L-1035"><span class="linenos">1035</span></a><span class="sd">    ----------</span>
+</span><span id="L-1036"><a href="#L-1036"><span class="linenos">1036</span></a><span class="sd">    func : object</span>
+</span><span id="L-1037"><a href="#L-1037"><span class="linenos">1037</span></a><span class="sd">        arbitrary function of the form func(data, **kwargs). For the</span>
+</span><span id="L-1038"><a href="#L-1038"><span class="linenos">1038</span></a><span class="sd">        automatic differentiation to work, all numpy functions have to have</span>
+</span><span id="L-1039"><a href="#L-1039"><span class="linenos">1039</span></a><span class="sd">        the autograd wrapper (use &#39;import autograd.numpy as anp&#39;).</span>
+</span><span id="L-1040"><a href="#L-1040"><span class="linenos">1040</span></a><span class="sd">    data : list</span>
+</span><span id="L-1041"><a href="#L-1041"><span class="linenos">1041</span></a><span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
+</span><span id="L-1042"><a href="#L-1042"><span class="linenos">1042</span></a><span class="sd">    num_grad : bool</span>
+</span><span id="L-1043"><a href="#L-1043"><span class="linenos">1043</span></a><span class="sd">        if True, numerical derivatives are used instead of autograd</span>
+</span><span id="L-1044"><a href="#L-1044"><span class="linenos">1044</span></a><span class="sd">        (default False). To control the numerical differentiation the</span>
+</span><span id="L-1045"><a href="#L-1045"><span class="linenos">1045</span></a><span class="sd">        kwargs of numdifftools.step_generators.MaxStepGenerator</span>
+</span><span id="L-1046"><a href="#L-1046"><span class="linenos">1046</span></a><span class="sd">        can be used.</span>
+</span><span id="L-1047"><a href="#L-1047"><span class="linenos">1047</span></a><span class="sd">    man_grad : list</span>
+</span><span id="L-1048"><a href="#L-1048"><span class="linenos">1048</span></a><span class="sd">        manually supply a list or an array which contains the jacobian</span>
+</span><span id="L-1049"><a href="#L-1049"><span class="linenos">1049</span></a><span class="sd">        of func. Use cautiously, supplying the wrong derivative will</span>
+</span><span id="L-1050"><a href="#L-1050"><span class="linenos">1050</span></a><span class="sd">        not be intercepted.</span>
+</span><span id="L-1051"><a href="#L-1051"><span class="linenos">1051</span></a>
+</span><span id="L-1052"><a href="#L-1052"><span class="linenos">1052</span></a><span class="sd">    Notes</span>
+</span><span id="L-1053"><a href="#L-1053"><span class="linenos">1053</span></a><span class="sd">    -----</span>
+</span><span id="L-1054"><a href="#L-1054"><span class="linenos">1054</span></a><span class="sd">    For simple mathematical operations it can be practical to use anonymous</span>
+</span><span id="L-1055"><a href="#L-1055"><span class="linenos">1055</span></a><span class="sd">    functions. For the ratio of two observables one can e.g. use</span>
+</span><span id="L-1056"><a href="#L-1056"><span class="linenos">1056</span></a>
+</span><span id="L-1057"><a href="#L-1057"><span class="linenos">1057</span></a><span class="sd">    new_obs = derived_observable(lambda x: x[0] / x[1], [obs1, obs2])</span>
+</span><span id="L-1058"><a href="#L-1058"><span class="linenos">1058</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1059"><a href="#L-1059"><span class="linenos">1059</span></a>
+</span><span id="L-1060"><a href="#L-1060"><span class="linenos">1060</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="L-1061"><a href="#L-1061"><span class="linenos">1061</span></a>    <span class="n">raveled_data</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">ravel</span><span class="p">()</span>
+</span><span id="L-1062"><a href="#L-1062"><span class="linenos">1062</span></a>
+</span><span id="L-1063"><a href="#L-1063"><span class="linenos">1063</span></a>    <span class="c1"># Workaround for matrix operations containing non Obs data</span>
+</span><span id="L-1064"><a href="#L-1064"><span class="linenos">1064</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">):</span>
+</span><span id="L-1065"><a href="#L-1065"><span class="linenos">1065</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)):</span>
+</span><span id="L-1066"><a href="#L-1066"><span class="linenos">1066</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+</span><span id="L-1067"><a href="#L-1067"><span class="linenos">1067</span></a>                <span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">cov_Obs</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">0.0</span><span class="p">,</span> <span class="s2">&quot;###dummy_covobs###&quot;</span><span class="p">)</span>
+</span><span id="L-1068"><a href="#L-1068"><span class="linenos">1068</span></a>
+</span><span id="L-1069"><a href="#L-1069"><span class="linenos">1069</span></a>    <span class="n">allcov</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1070"><a href="#L-1070"><span class="linenos">1070</span></a>    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">:</span>
+</span><span id="L-1071"><a href="#L-1071"><span class="linenos">1071</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="L-1072"><a href="#L-1072"><span class="linenos">1072</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">allcov</span><span class="p">:</span>
+</span><span id="L-1073"><a href="#L-1073"><span class="linenos">1073</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">):</span>
+</span><span id="L-1074"><a href="#L-1074"><span class="linenos">1074</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Inconsistent covariance matrices for </span><span class="si">%s</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="L-1075"><a href="#L-1075"><span class="linenos">1075</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1076"><a href="#L-1076"><span class="linenos">1076</span></a>                <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span>
+</span><span id="L-1077"><a href="#L-1077"><span class="linenos">1077</span></a>
+</span><span id="L-1078"><a href="#L-1078"><span class="linenos">1078</span></a>    <span class="n">n_obs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)</span>
+</span><span id="L-1079"><a href="#L-1079"><span class="linenos">1079</span></a>    <span class="n">new_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
+</span><span id="L-1080"><a href="#L-1080"><span class="linenos">1080</span></a>    <span class="n">new_cov_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
+</span><span id="L-1081"><a href="#L-1081"><span class="linenos">1081</span></a>    <span class="n">new_sample_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_cov_names</span><span class="p">))</span>
+</span><span id="L-1082"><a href="#L-1082"><span class="linenos">1082</span></a>
+</span><span id="L-1083"><a href="#L-1083"><span class="linenos">1083</span></a>    <span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">}</span>
+</span><span id="L-1084"><a href="#L-1084"><span class="linenos">1084</span></a>    <span class="n">reweighted</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span>
+</span><span id="L-1085"><a href="#L-1085"><span class="linenos">1085</span></a>
+</span><span id="L-1086"><a href="#L-1086"><span class="linenos">1086</span></a>    <span class="k">if</span> <span class="n">data</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-1087"><a href="#L-1087"><span class="linenos">1087</span></a>        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data</span><span class="p">])</span>
+</span><span id="L-1088"><a href="#L-1088"><span class="linenos">1088</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1089"><a href="#L-1089"><span class="linenos">1089</span></a>        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="L-1090"><a href="#L-1090"><span class="linenos">1090</span></a>
+</span><span id="L-1091"><a href="#L-1091"><span class="linenos">1091</span></a>    <span class="n">new_values</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-1092"><a href="#L-1092"><span class="linenos">1092</span></a>
+</span><span id="L-1093"><a href="#L-1093"><span class="linenos">1093</span></a>    <span class="n">multi</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">new_values</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">))</span>
+</span><span id="L-1094"><a href="#L-1094"><span class="linenos">1094</span></a>
+</span><span id="L-1095"><a href="#L-1095"><span class="linenos">1095</span></a>    <span class="n">new_r_values</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1096"><a href="#L-1096"><span class="linenos">1096</span></a>    <span class="n">new_idl_d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1097"><a href="#L-1097"><span class="linenos">1097</span></a>    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
+</span><span id="L-1098"><a href="#L-1098"><span class="linenos">1098</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1099"><a href="#L-1099"><span class="linenos">1099</span></a>        <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n_obs</span><span class="p">)</span>
+</span><span id="L-1100"><a href="#L-1100"><span class="linenos">1100</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">):</span>
+</span><span id="L-1101"><a href="#L-1101"><span class="linenos">1101</span></a>            <span class="n">tmp_values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">item</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-1102"><a href="#L-1102"><span class="linenos">1102</span></a>            <span class="n">tmp_idl</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="L-1103"><a href="#L-1103"><span class="linenos">1103</span></a>            <span class="k">if</span> <span class="n">tmp_idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-1104"><a href="#L-1104"><span class="linenos">1104</span></a>                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_idl</span><span class="p">)</span>
+</span><span id="L-1105"><a href="#L-1105"><span class="linenos">1105</span></a>        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-1106"><a href="#L-1106"><span class="linenos">1106</span></a>            <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+</span><span id="L-1107"><a href="#L-1107"><span class="linenos">1107</span></a>        <span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-1108"><a href="#L-1108"><span class="linenos">1108</span></a>        <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span>
+</span><span id="L-1109"><a href="#L-1109"><span class="linenos">1109</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="L-1110"><a href="#L-1110"><span class="linenos">1110</span></a>            <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="p">[</span><span class="o">*</span><span class="n">idl</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]]])))</span>
+</span><span id="L-1111"><a href="#L-1111"><span class="linenos">1111</span></a>
+</span><span id="L-1112"><a href="#L-1112"><span class="linenos">1112</span></a>    <span class="k">if</span> <span class="s1">&#39;man_grad&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="L-1113"><a href="#L-1113"><span class="linenos">1113</span></a>        <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;man_grad&#39;</span><span class="p">))</span>
+</span><span id="L-1114"><a href="#L-1114"><span class="linenos">1114</span></a>        <span class="k">if</span> <span class="n">new_values</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">data</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">deriv</span><span class="o">.</span><span class="n">shape</span><span class="p">:</span>
+</span><span id="L-1115"><a href="#L-1115"><span class="linenos">1115</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Manual derivative does not have correct shape.&#39;</span><span class="p">)</span>
+</span><span id="L-1116"><a href="#L-1116"><span class="linenos">1116</span></a>    <span class="k">elif</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;num_grad&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-1117"><a href="#L-1117"><span class="linenos">1117</span></a>        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-1118"><a href="#L-1118"><span class="linenos">1118</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Multi mode currently not supported for numerical derivative&#39;</span><span class="p">)</span>
+</span><span id="L-1119"><a href="#L-1119"><span class="linenos">1119</span></a>        <span class="n">options</span> <span class="o">=</span> <span class="p">{</span>
+</span><span id="L-1120"><a href="#L-1120"><span class="linenos">1120</span></a>            <span class="s1">&#39;base_step&#39;</span><span class="p">:</span> <span class="mf">0.1</span><span class="p">,</span>
+</span><span id="L-1121"><a href="#L-1121"><span class="linenos">1121</span></a>            <span class="s1">&#39;step_ratio&#39;</span><span class="p">:</span> <span class="mf">2.5</span><span class="p">}</span>
+</span><span id="L-1122"><a href="#L-1122"><span class="linenos">1122</span></a>        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+</span><span id="L-1123"><a href="#L-1123"><span class="linenos">1123</span></a>            <span class="n">kwarg</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+</span><span id="L-1124"><a href="#L-1124"><span class="linenos">1124</span></a>            <span class="k">if</span> <span class="n">kwarg</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="L-1125"><a href="#L-1125"><span class="linenos">1125</span></a>                <span class="n">options</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">kwarg</span>
+</span><span id="L-1126"><a href="#L-1126"><span class="linenos">1126</span></a>        <span class="n">tmp_df</span> <span class="o">=</span> <span class="n">nd</span><span class="o">.</span><span class="n">Gradient</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="o">**</span><span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> <span class="k">if</span> <span class="n">v</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">})(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-1127"><a href="#L-1127"><span class="linenos">1127</span></a>        <span class="k">if</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">size</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-1128"><a href="#L-1128"><span class="linenos">1128</span></a>            <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span><span class="p">])</span>
+</span><span id="L-1129"><a href="#L-1129"><span class="linenos">1129</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1130"><a href="#L-1130"><span class="linenos">1130</span></a>            <span class="n">deriv</span> <span class="o">=</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span>
+</span><span id="L-1131"><a href="#L-1131"><span class="linenos">1131</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1132"><a href="#L-1132"><span class="linenos">1132</span></a>        <span class="n">deriv</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="L-1133"><a href="#L-1133"><span class="linenos">1133</span></a>
+</span><span id="L-1134"><a href="#L-1134"><span class="linenos">1134</span></a>    <span class="n">final_result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">new_values</span><span class="o">.</span><span class="n">shape</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="L-1135"><a href="#L-1135"><span class="linenos">1135</span></a>
+</span><span id="L-1136"><a href="#L-1136"><span class="linenos">1136</span></a>    <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-1137"><a href="#L-1137"><span class="linenos">1137</span></a>
+</span><span id="L-1138"><a href="#L-1138"><span class="linenos">1138</span></a>        <span class="k">class</span> <span class="nc">_Zero_grad</span><span class="p">():</span>
+</span><span id="L-1139"><a href="#L-1139"><span class="linenos">1139</span></a>            <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">):</span>
+</span><span id="L-1140"><a href="#L-1140"><span class="linenos">1140</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="L-1141"><a href="#L-1141"><span class="linenos">1141</span></a>
+</span><span id="L-1142"><a href="#L-1142"><span class="linenos">1142</span></a>        <span class="n">new_covobs_lengths</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[[(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
+</span><span id="L-1143"><a href="#L-1143"><span class="linenos">1143</span></a>        <span class="n">d_extracted</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1144"><a href="#L-1144"><span class="linenos">1144</span></a>        <span class="n">g_extracted</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1145"><a href="#L-1145"><span class="linenos">1145</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
+</span><span id="L-1146"><a href="#L-1146"><span class="linenos">1146</span></a>            <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1147"><a href="#L-1147"><span class="linenos">1147</span></a>            <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-1148"><a href="#L-1148"><span class="linenos">1148</span></a>            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+</span><span id="L-1149"><a href="#L-1149"><span class="linenos">1149</span></a>                <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)),</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]),</span> <span class="n">o</span><span class="o">.</span><span class="n">shape</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">ens_length</span><span class="p">),</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">ens_length</span><span class="p">,</span> <span class="p">)))</span>
+</span><span id="L-1150"><a href="#L-1150"><span class="linenos">1150</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
+</span><span id="L-1151"><a href="#L-1151"><span class="linenos">1151</span></a>            <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1152"><a href="#L-1152"><span class="linenos">1152</span></a>            <span class="n">zero_grad</span> <span class="o">=</span> <span class="n">_Zero_grad</span><span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-1153"><a href="#L-1153"><span class="linenos">1153</span></a>            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+</span><span id="L-1154"><a href="#L-1154"><span class="linenos">1154</span></a>                <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">zero_grad</span><span class="p">)</span><span class="o">.</span><span class="n">grad</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="mi">1</span><span class="p">)))</span>
+</span><span id="L-1155"><a href="#L-1155"><span class="linenos">1155</span></a>
+</span><span id="L-1156"><a href="#L-1156"><span class="linenos">1156</span></a>    <span class="k">for</span> <span class="n">i_val</span><span class="p">,</span> <span class="n">new_val</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">new_values</span><span class="p">):</span>
+</span><span id="L-1157"><a href="#L-1157"><span class="linenos">1157</span></a>        <span class="n">new_deltas</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1158"><a href="#L-1158"><span class="linenos">1158</span></a>        <span class="n">new_grad</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1159"><a href="#L-1159"><span class="linenos">1159</span></a>        <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-1160"><a href="#L-1160"><span class="linenos">1160</span></a>            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
+</span><span id="L-1161"><a href="#L-1161"><span class="linenos">1161</span></a>                <span class="n">ens_length</span> <span class="o">=</span> <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="L-1162"><a href="#L-1162"><span class="linenos">1162</span></a>                <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)</span>
+</span><span id="L-1163"><a href="#L-1163"><span class="linenos">1163</span></a>                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
+</span><span id="L-1164"><a href="#L-1164"><span class="linenos">1164</span></a>                    <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
+</span><span id="L-1165"><a href="#L-1165"><span class="linenos">1165</span></a>            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
+</span><span id="L-1166"><a href="#L-1166"><span class="linenos">1166</span></a>                <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-1167"><a href="#L-1167"><span class="linenos">1167</span></a>                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
+</span><span id="L-1168"><a href="#L-1168"><span class="linenos">1168</span></a>                    <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
+</span><span id="L-1169"><a href="#L-1169"><span class="linenos">1169</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1170"><a href="#L-1170"><span class="linenos">1170</span></a>            <span class="k">for</span> <span class="n">j_obs</span><span class="p">,</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+</span><span id="L-1171"><a href="#L-1171"><span class="linenos">1171</span></a>                <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="L-1172"><a href="#L-1172"><span class="linenos">1172</span></a>                    <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="L-1173"><a href="#L-1173"><span class="linenos">1173</span></a>                        <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_grad</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">obs</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span>
+</span><span id="L-1174"><a href="#L-1174"><span class="linenos">1174</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1175"><a href="#L-1175"><span class="linenos">1175</span></a>                        <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-1176"><a href="#L-1176"><span class="linenos">1176</span></a>
+</span><span id="L-1177"><a href="#L-1177"><span class="linenos">1177</span></a>        <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_grad</span><span class="p">}</span>
+</span><span id="L-1178"><a href="#L-1178"><span class="linenos">1178</span></a>
+</span><span id="L-1179"><a href="#L-1179"><span class="linenos">1179</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="n">new_deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
+</span><span id="L-1180"><a href="#L-1180"><span class="linenos">1180</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The same name has been used for deltas and covobs!&#39;</span><span class="p">)</span>
+</span><span id="L-1181"><a href="#L-1181"><span class="linenos">1181</span></a>        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1182"><a href="#L-1182"><span class="linenos">1182</span></a>        <span class="n">new_means</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1183"><a href="#L-1183"><span class="linenos">1183</span></a>        <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1184"><a href="#L-1184"><span class="linenos">1184</span></a>        <span class="n">new_names_obs</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1185"><a href="#L-1185"><span class="linenos">1185</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_names</span><span class="p">:</span>
+</span><span id="L-1186"><a href="#L-1186"><span class="linenos">1186</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
+</span><span id="L-1187"><a href="#L-1187"><span class="linenos">1187</span></a>                <span class="k">if</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="L-1188"><a href="#L-1188"><span class="linenos">1188</span></a>                    <span class="n">filtered_deltas</span><span class="p">,</span> <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">_filter_zeroes</span><span class="p">(</span><span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-1189"><a href="#L-1189"><span class="linenos">1189</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1190"><a href="#L-1190"><span class="linenos">1190</span></a>                    <span class="n">filtered_deltas</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-1191"><a href="#L-1191"><span class="linenos">1191</span></a>                    <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="L-1192"><a href="#L-1192"><span class="linenos">1192</span></a>
+</span><span id="L-1193"><a href="#L-1193"><span class="linenos">1193</span></a>                <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_deltas</span><span class="p">)</span>
+</span><span id="L-1194"><a href="#L-1194"><span class="linenos">1194</span></a>                <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_idl_d</span><span class="p">)</span>
+</span><span id="L-1195"><a href="#L-1195"><span class="linenos">1195</span></a>                <span class="n">new_means</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i_val</span><span class="p">])</span>
+</span><span id="L-1196"><a href="#L-1196"><span class="linenos">1196</span></a>                <span class="n">new_names_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="L-1197"><a href="#L-1197"><span class="linenos">1197</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="n">new_names_obs</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="n">new_means</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
+</span><span id="L-1198"><a href="#L-1198"><span class="linenos">1198</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
+</span><span id="L-1199"><a href="#L-1199"><span class="linenos">1199</span></a>            <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="L-1200"><a href="#L-1200"><span class="linenos">1200</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
+</span><span id="L-1201"><a href="#L-1201"><span class="linenos">1201</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">new_val</span>
+</span><span id="L-1202"><a href="#L-1202"><span class="linenos">1202</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">is_merged</span>
+</span><span id="L-1203"><a href="#L-1203"><span class="linenos">1203</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">reweighted</span>
+</span><span id="L-1204"><a href="#L-1204"><span class="linenos">1204</span></a>
+</span><span id="L-1205"><a href="#L-1205"><span class="linenos">1205</span></a>    <span class="k">if</span> <span class="n">multi</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-1206"><a href="#L-1206"><span class="linenos">1206</span></a>        <span class="n">final_result</span> <span class="o">=</span> <span class="n">final_result</span><span class="o">.</span><span class="n">item</span><span class="p">()</span>
+</span><span id="L-1207"><a href="#L-1207"><span class="linenos">1207</span></a>
+</span><span id="L-1208"><a href="#L-1208"><span class="linenos">1208</span></a>    <span class="k">return</span> <span class="n">final_result</span>
+</span><span id="L-1209"><a href="#L-1209"><span class="linenos">1209</span></a>
+</span><span id="L-1210"><a href="#L-1210"><span class="linenos">1210</span></a>
+</span><span id="L-1211"><a href="#L-1211"><span class="linenos">1211</span></a><span class="k">def</span> <span class="nf">_reduce_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx_old</span><span class="p">,</span> <span class="n">idx_new</span><span class="p">):</span>
+</span><span id="L-1212"><a href="#L-1212"><span class="linenos">1212</span></a>    <span class="sd">&quot;&quot;&quot;Extract deltas defined on idx_old on all configs of idx_new.</span>
+</span><span id="L-1213"><a href="#L-1213"><span class="linenos">1213</span></a>
+</span><span id="L-1214"><a href="#L-1214"><span class="linenos">1214</span></a><span class="sd">    Assumes, that idx_old and idx_new are correctly defined idl, i.e., they</span>
+</span><span id="L-1215"><a href="#L-1215"><span class="linenos">1215</span></a><span class="sd">    are ordered in an ascending order.</span>
+</span><span id="L-1216"><a href="#L-1216"><span class="linenos">1216</span></a>
+</span><span id="L-1217"><a href="#L-1217"><span class="linenos">1217</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1218"><a href="#L-1218"><span class="linenos">1218</span></a><span class="sd">    ----------</span>
+</span><span id="L-1219"><a href="#L-1219"><span class="linenos">1219</span></a><span class="sd">    deltas : list</span>
+</span><span id="L-1220"><a href="#L-1220"><span class="linenos">1220</span></a><span class="sd">        List of fluctuations</span>
+</span><span id="L-1221"><a href="#L-1221"><span class="linenos">1221</span></a><span class="sd">    idx_old : list</span>
+</span><span id="L-1222"><a href="#L-1222"><span class="linenos">1222</span></a><span class="sd">        List or range of configs on which the deltas are defined</span>
+</span><span id="L-1223"><a href="#L-1223"><span class="linenos">1223</span></a><span class="sd">    idx_new : list</span>
+</span><span id="L-1224"><a href="#L-1224"><span class="linenos">1224</span></a><span class="sd">        List of configs for which we want to extract the deltas.</span>
+</span><span id="L-1225"><a href="#L-1225"><span class="linenos">1225</span></a><span class="sd">        Has to be a subset of idx_old.</span>
+</span><span id="L-1226"><a href="#L-1226"><span class="linenos">1226</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1227"><a href="#L-1227"><span class="linenos">1227</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">):</span>
+</span><span id="L-1228"><a href="#L-1228"><span class="linenos">1228</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of deltas and idx_old have to be the same: </span><span class="si">%d</span><span class="s1"> != </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)))</span>
+</span><span id="L-1229"><a href="#L-1229"><span class="linenos">1229</span></a>    <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx_new</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span><span class="p">:</span>
+</span><span id="L-1230"><a href="#L-1230"><span class="linenos">1230</span></a>        <span class="k">if</span> <span class="n">idx_old</span> <span class="o">==</span> <span class="n">idx_new</span><span class="p">:</span>
+</span><span id="L-1231"><a href="#L-1231"><span class="linenos">1231</span></a>            <span class="k">return</span> <span class="n">deltas</span>
+</span><span id="L-1232"><a href="#L-1232"><span class="linenos">1232</span></a>    <span class="n">shape</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_new</span><span class="p">)</span>
+</span><span id="L-1233"><a href="#L-1233"><span class="linenos">1233</span></a>    <span class="n">ret</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">shape</span><span class="p">)</span>
+</span><span id="L-1234"><a href="#L-1234"><span class="linenos">1234</span></a>    <span class="n">oldpos</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-1235"><a href="#L-1235"><span class="linenos">1235</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">shape</span><span class="p">):</span>
+</span><span id="L-1236"><a href="#L-1236"><span class="linenos">1236</span></a>        <span class="n">pos</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+</span><span id="L-1237"><a href="#L-1237"><span class="linenos">1237</span></a>        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">oldpos</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)):</span>
+</span><span id="L-1238"><a href="#L-1238"><span class="linenos">1238</span></a>            <span class="k">if</span> <span class="n">idx_old</span><span class="p">[</span><span class="n">j</span><span class="p">]</span> <span class="o">==</span> <span class="n">idx_new</span><span class="p">[</span><span class="n">i</span><span class="p">]:</span>
+</span><span id="L-1239"><a href="#L-1239"><span class="linenos">1239</span></a>                <span class="n">pos</span> <span class="o">=</span> <span class="n">j</span>
+</span><span id="L-1240"><a href="#L-1240"><span class="linenos">1240</span></a>                <span class="k">break</span>
+</span><span id="L-1241"><a href="#L-1241"><span class="linenos">1241</span></a>        <span class="k">if</span> <span class="n">pos</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="L-1242"><a href="#L-1242"><span class="linenos">1242</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error in _reduce_deltas: Config </span><span class="si">%d</span><span class="s1"> not in idx_old&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">idx_new</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
+</span><span id="L-1243"><a href="#L-1243"><span class="linenos">1243</span></a>        <span class="n">ret</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">deltas</span><span class="p">[</span><span class="n">pos</span><span class="p">]</span>
+</span><span id="L-1244"><a href="#L-1244"><span class="linenos">1244</span></a>        <span class="n">oldpos</span> <span class="o">=</span> <span class="n">pos</span>
+</span><span id="L-1245"><a href="#L-1245"><span class="linenos">1245</span></a>    <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">ret</span><span class="p">)</span>
+</span><span id="L-1246"><a href="#L-1246"><span class="linenos">1246</span></a>
+</span><span id="L-1247"><a href="#L-1247"><span class="linenos">1247</span></a>
+</span><span id="L-1248"><a href="#L-1248"><span class="linenos">1248</span></a><span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-1249"><a href="#L-1249"><span class="linenos">1249</span></a>    <span class="sd">&quot;&quot;&quot;Reweight a list of observables.</span>
+</span><span id="L-1250"><a href="#L-1250"><span class="linenos">1250</span></a>
+</span><span id="L-1251"><a href="#L-1251"><span class="linenos">1251</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1252"><a href="#L-1252"><span class="linenos">1252</span></a><span class="sd">    ----------</span>
+</span><span id="L-1253"><a href="#L-1253"><span class="linenos">1253</span></a><span class="sd">    weight : Obs</span>
+</span><span id="L-1254"><a href="#L-1254"><span class="linenos">1254</span></a><span class="sd">        Reweighting factor. An Observable that has to be defined on a superset of the</span>
+</span><span id="L-1255"><a href="#L-1255"><span class="linenos">1255</span></a><span class="sd">        configurations in obs[i].idl for all i.</span>
+</span><span id="L-1256"><a href="#L-1256"><span class="linenos">1256</span></a><span class="sd">    obs : list</span>
+</span><span id="L-1257"><a href="#L-1257"><span class="linenos">1257</span></a><span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
+</span><span id="L-1258"><a href="#L-1258"><span class="linenos">1258</span></a><span class="sd">    all_configs : bool</span>
+</span><span id="L-1259"><a href="#L-1259"><span class="linenos">1259</span></a><span class="sd">        if True, the reweighted observables are normalized by the average of</span>
+</span><span id="L-1260"><a href="#L-1260"><span class="linenos">1260</span></a><span class="sd">        the reweighting factor on all configurations in weight.idl and not</span>
+</span><span id="L-1261"><a href="#L-1261"><span class="linenos">1261</span></a><span class="sd">        on the configurations in obs[i].idl.</span>
+</span><span id="L-1262"><a href="#L-1262"><span class="linenos">1262</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1263"><a href="#L-1263"><span class="linenos">1263</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1264"><a href="#L-1264"><span class="linenos">1264</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)):</span>
+</span><span id="L-1265"><a href="#L-1265"><span class="linenos">1265</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
+</span><span id="L-1266"><a href="#L-1266"><span class="linenos">1266</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to reweight an Obs that contains covobs!&#39;</span><span class="p">)</span>
+</span><span id="L-1267"><a href="#L-1267"><span class="linenos">1267</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="L-1268"><a href="#L-1268"><span class="linenos">1268</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Ensembles do not fit&#39;</span><span class="p">)</span>
+</span><span id="L-1269"><a href="#L-1269"><span class="linenos">1269</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="L-1270"><a href="#L-1270"><span class="linenos">1270</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
+</span><span id="L-1271"><a href="#L-1271"><span class="linenos">1271</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
+</span><span id="L-1272"><a href="#L-1272"><span class="linenos">1272</span></a>        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1273"><a href="#L-1273"><span class="linenos">1273</span></a>        <span class="n">w_deltas</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1274"><a href="#L-1274"><span class="linenos">1274</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="L-1275"><a href="#L-1275"><span class="linenos">1275</span></a>            <span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_reduce_deltas</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-1276"><a href="#L-1276"><span class="linenos">1276</span></a>            <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
+</span><span id="L-1277"><a href="#L-1277"><span class="linenos">1277</span></a>        <span class="n">tmp_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
+</span><span id="L-1278"><a href="#L-1278"><span class="linenos">1278</span></a>
+</span><span id="L-1279"><a href="#L-1279"><span class="linenos">1279</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;all_configs&#39;</span><span class="p">):</span>
+</span><span id="L-1280"><a href="#L-1280"><span class="linenos">1280</span></a>            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">weight</span>
+</span><span id="L-1281"><a href="#L-1281"><span class="linenos">1281</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1282"><a href="#L-1282"><span class="linenos">1282</span></a>            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)],</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
+</span><span id="L-1283"><a href="#L-1283"><span class="linenos">1283</span></a>
+</span><span id="L-1284"><a href="#L-1284"><span class="linenos">1284</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">tmp_obs</span><span class="p">,</span> <span class="n">new_weight</span><span class="p">],</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">))</span>
+</span><span id="L-1285"><a href="#L-1285"><span class="linenos">1285</span></a>        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="L-1286"><a href="#L-1286"><span class="linenos">1286</span></a>        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span>
+</span><span id="L-1287"><a href="#L-1287"><span class="linenos">1287</span></a>
+</span><span id="L-1288"><a href="#L-1288"><span class="linenos">1288</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span><span id="L-1289"><a href="#L-1289"><span class="linenos">1289</span></a>
+</span><span id="L-1290"><a href="#L-1290"><span class="linenos">1290</span></a>
+</span><span id="L-1291"><a href="#L-1291"><span class="linenos">1291</span></a><span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="n">obs_a</span><span class="p">,</span> <span class="n">obs_b</span><span class="p">):</span>
+</span><span id="L-1292"><a href="#L-1292"><span class="linenos">1292</span></a>    <span class="sd">&quot;&quot;&quot;Correlate two observables.</span>
+</span><span id="L-1293"><a href="#L-1293"><span class="linenos">1293</span></a>
+</span><span id="L-1294"><a href="#L-1294"><span class="linenos">1294</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1295"><a href="#L-1295"><span class="linenos">1295</span></a><span class="sd">    ----------</span>
+</span><span id="L-1296"><a href="#L-1296"><span class="linenos">1296</span></a><span class="sd">    obs_a : Obs</span>
+</span><span id="L-1297"><a href="#L-1297"><span class="linenos">1297</span></a><span class="sd">        First observable</span>
+</span><span id="L-1298"><a href="#L-1298"><span class="linenos">1298</span></a><span class="sd">    obs_b : Obs</span>
+</span><span id="L-1299"><a href="#L-1299"><span class="linenos">1299</span></a><span class="sd">        Second observable</span>
+</span><span id="L-1300"><a href="#L-1300"><span class="linenos">1300</span></a>
+</span><span id="L-1301"><a href="#L-1301"><span class="linenos">1301</span></a><span class="sd">    Notes</span>
+</span><span id="L-1302"><a href="#L-1302"><span class="linenos">1302</span></a><span class="sd">    -----</span>
+</span><span id="L-1303"><a href="#L-1303"><span class="linenos">1303</span></a><span class="sd">    Keep in mind to only correlate primary observables which have not been reweighted</span>
+</span><span id="L-1304"><a href="#L-1304"><span class="linenos">1304</span></a><span class="sd">    yet. The reweighting has to be applied after correlating the observables.</span>
+</span><span id="L-1305"><a href="#L-1305"><span class="linenos">1305</span></a><span class="sd">    Currently only works if ensembles are identical (this is not strictly necessary).</span>
+</span><span id="L-1306"><a href="#L-1306"><span class="linenos">1306</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1307"><a href="#L-1307"><span class="linenos">1307</span></a>
+</span><span id="L-1308"><a href="#L-1308"><span class="linenos">1308</span></a>    <span class="k">if</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="L-1309"><a href="#L-1309"><span class="linenos">1309</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Ensembles do not fit&#39;</span><span class="p">)</span>
+</span><span id="L-1310"><a href="#L-1310"><span class="linenos">1310</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
+</span><span id="L-1311"><a href="#L-1311"><span class="linenos">1311</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to correlate Obs that contain covobs!&#39;</span><span class="p">)</span>
+</span><span id="L-1312"><a href="#L-1312"><span class="linenos">1312</span></a>    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="L-1313"><a href="#L-1313"><span class="linenos">1313</span></a>        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="L-1314"><a href="#L-1314"><span class="linenos">1314</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Shapes of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
+</span><span id="L-1315"><a href="#L-1315"><span class="linenos">1315</span></a>        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="L-1316"><a href="#L-1316"><span class="linenos">1316</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;idl of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
+</span><span id="L-1317"><a href="#L-1317"><span class="linenos">1317</span></a>
+</span><span id="L-1318"><a href="#L-1318"><span class="linenos">1318</span></a>    <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-1319"><a href="#L-1319"><span class="linenos">1319</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The first observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-1320"><a href="#L-1320"><span class="linenos">1320</span></a>    <span class="k">if</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-1321"><a href="#L-1321"><span class="linenos">1321</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The second observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-1322"><a href="#L-1322"><span class="linenos">1322</span></a>
+</span><span id="L-1323"><a href="#L-1323"><span class="linenos">1323</span></a>    <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1324"><a href="#L-1324"><span class="linenos">1324</span></a>    <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1325"><a href="#L-1325"><span class="linenos">1325</span></a>    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="L-1326"><a href="#L-1326"><span class="linenos">1326</span></a>        <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">obs_a</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
+</span><span id="L-1327"><a href="#L-1327"><span class="linenos">1327</span></a>        <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="L-1328"><a href="#L-1328"><span class="linenos">1328</span></a>
+</span><span id="L-1329"><a href="#L-1329"><span class="linenos">1329</span></a>    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
+</span><span id="L-1330"><a href="#L-1330"><span class="linenos">1330</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">))</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
+</span><span id="L-1331"><a href="#L-1331"><span class="linenos">1331</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="L-1332"><a href="#L-1332"><span class="linenos">1332</span></a>    <span class="k">return</span> <span class="n">o</span>
+</span><span id="L-1333"><a href="#L-1333"><span class="linenos">1333</span></a>
+</span><span id="L-1334"><a href="#L-1334"><span class="linenos">1334</span></a>
+</span><span id="L-1335"><a href="#L-1335"><span class="linenos">1335</span></a><span class="k">def</span> <span class="nf">covariance</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="n">visualize</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">correlation</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-1336"><a href="#L-1336"><span class="linenos">1336</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Calculates the covariance matrix of a set of observables.</span>
+</span><span id="L-1337"><a href="#L-1337"><span class="linenos">1337</span></a>
+</span><span id="L-1338"><a href="#L-1338"><span class="linenos">1338</span></a><span class="sd">    The gamma method has to be applied first to all observables.</span>
+</span><span id="L-1339"><a href="#L-1339"><span class="linenos">1339</span></a>
+</span><span id="L-1340"><a href="#L-1340"><span class="linenos">1340</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1341"><a href="#L-1341"><span class="linenos">1341</span></a><span class="sd">    ----------</span>
+</span><span id="L-1342"><a href="#L-1342"><span class="linenos">1342</span></a><span class="sd">    obs : list or numpy.ndarray</span>
+</span><span id="L-1343"><a href="#L-1343"><span class="linenos">1343</span></a><span class="sd">        List or one dimensional array of Obs</span>
+</span><span id="L-1344"><a href="#L-1344"><span class="linenos">1344</span></a><span class="sd">    visualize : bool</span>
+</span><span id="L-1345"><a href="#L-1345"><span class="linenos">1345</span></a><span class="sd">        If True plots the corresponding normalized correlation matrix (default False).</span>
+</span><span id="L-1346"><a href="#L-1346"><span class="linenos">1346</span></a><span class="sd">    correlation : bool</span>
+</span><span id="L-1347"><a href="#L-1347"><span class="linenos">1347</span></a><span class="sd">        If True the correlation instead of the covariance is returned (default False).</span>
+</span><span id="L-1348"><a href="#L-1348"><span class="linenos">1348</span></a><span class="sd">    smooth : None or int</span>
+</span><span id="L-1349"><a href="#L-1349"><span class="linenos">1349</span></a><span class="sd">        If smooth is an integer &#39;E&#39; between 2 and the dimension of the matrix minus 1 the eigenvalue</span>
+</span><span id="L-1350"><a href="#L-1350"><span class="linenos">1350</span></a><span class="sd">        smoothing procedure of hep-lat/9412087 is applied to the correlation matrix which leaves the</span>
+</span><span id="L-1351"><a href="#L-1351"><span class="linenos">1351</span></a><span class="sd">        largest E eigenvalues essentially unchanged and smoothes the smaller eigenvalues to avoid extremely</span>
+</span><span id="L-1352"><a href="#L-1352"><span class="linenos">1352</span></a><span class="sd">        small ones.</span>
+</span><span id="L-1353"><a href="#L-1353"><span class="linenos">1353</span></a>
+</span><span id="L-1354"><a href="#L-1354"><span class="linenos">1354</span></a><span class="sd">    Notes</span>
+</span><span id="L-1355"><a href="#L-1355"><span class="linenos">1355</span></a><span class="sd">    -----</span>
+</span><span id="L-1356"><a href="#L-1356"><span class="linenos">1356</span></a><span class="sd">    The covariance is estimated by calculating the correlation matrix assuming no autocorrelation and then rescaling the correlation matrix by the full errors including the previous gamma method estimate for the autocorrelation of the observables. The covariance at windowsize 0 is guaranteed to be positive semi-definite</span>
+</span><span id="L-1357"><a href="#L-1357"><span class="linenos">1357</span></a><span class="sd">    $$v_i\Gamma_{ij}(0)v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i,j}v_i\delta_i^s\delta_j^s v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i}|v_i\delta_i^s|^2\geq 0\,,$$ for every $v\in\mathbb{R}^M$, while such an identity does not hold for larger windows/lags.</span>
+</span><span id="L-1358"><a href="#L-1358"><span class="linenos">1358</span></a><span class="sd">    For observables defined on a single ensemble our approximation is equivalent to assuming that the integrated autocorrelation time of an off-diagonal element is equal to the geometric mean of the integrated autocorrelation times of the corresponding diagonal elements.</span>
+</span><span id="L-1359"><a href="#L-1359"><span class="linenos">1359</span></a><span class="sd">    $$\tau_{\mathrm{int}, ij}=\sqrt{\tau_{\mathrm{int}, i}\times \tau_{\mathrm{int}, j}}$$</span>
+</span><span id="L-1360"><a href="#L-1360"><span class="linenos">1360</span></a><span class="sd">    This construction ensures that the estimated covariance matrix is positive semi-definite (up to numerical rounding errors).</span>
+</span><span id="L-1361"><a href="#L-1361"><span class="linenos">1361</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="L-1362"><a href="#L-1362"><span class="linenos">1362</span></a>
+</span><span id="L-1363"><a href="#L-1363"><span class="linenos">1363</span></a>    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
+</span><span id="L-1364"><a href="#L-1364"><span class="linenos">1364</span></a>
+</span><span id="L-1365"><a href="#L-1365"><span class="linenos">1365</span></a>    <span class="n">max_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">])</span>
+</span><span id="L-1366"><a href="#L-1366"><span class="linenos">1366</span></a>    <span class="k">if</span> <span class="n">max_samples</span> <span class="o">&lt;=</span> <span class="n">length</span> <span class="ow">and</span> <span class="ow">not</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]:</span>
+</span><span id="L-1367"><a href="#L-1367"><span class="linenos">1367</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;The dimension of the covariance matrix (</span><span class="si">{</span><span class="n">length</span><span class="si">}</span><span class="s2">) is larger or equal to the number of samples (</span><span class="si">{</span><span class="n">max_samples</span><span class="si">}</span><span class="s2">). This will result in a rank deficient matrix.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-1368"><a href="#L-1368"><span class="linenos">1368</span></a>
+</span><span id="L-1369"><a href="#L-1369"><span class="linenos">1369</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span>
+</span><span id="L-1370"><a href="#L-1370"><span class="linenos">1370</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">length</span><span class="p">):</span>
+</span><span id="L-1371"><a href="#L-1371"><span class="linenos">1371</span></a>        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">length</span><span class="p">):</span>
+</span><span id="L-1372"><a href="#L-1372"><span class="linenos">1372</span></a>            <span class="n">cov</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">_covariance_element</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">j</span><span class="p">])</span>
+</span><span id="L-1373"><a href="#L-1373"><span class="linenos">1373</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">cov</span> <span class="o">+</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">))</span>
+</span><span id="L-1374"><a href="#L-1374"><span class="linenos">1374</span></a>
+</span><span id="L-1375"><a href="#L-1375"><span class="linenos">1375</span></a>    <span class="n">corr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span>
+</span><span id="L-1376"><a href="#L-1376"><span class="linenos">1376</span></a>
+</span><span id="L-1377"><a href="#L-1377"><span class="linenos">1377</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">smooth</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+</span><span id="L-1378"><a href="#L-1378"><span class="linenos">1378</span></a>        <span class="n">corr</span> <span class="o">=</span> <span class="n">_smooth_eigenvalues</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">smooth</span><span class="p">)</span>
+</span><span id="L-1379"><a href="#L-1379"><span class="linenos">1379</span></a>
+</span><span id="L-1380"><a href="#L-1380"><span class="linenos">1380</span></a>    <span class="n">errors</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span>
+</span><span id="L-1381"><a href="#L-1381"><span class="linenos">1381</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span> <span class="o">@</span> <span class="n">corr</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span>
+</span><span id="L-1382"><a href="#L-1382"><span class="linenos">1382</span></a>
+</span><span id="L-1383"><a href="#L-1383"><span class="linenos">1383</span></a>    <span class="n">eigenvalues</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">cov</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-1384"><a href="#L-1384"><span class="linenos">1384</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">eigenvalues</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="L-1385"><a href="#L-1385"><span class="linenos">1385</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not positive semi-definite (Eigenvalues: &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">eigenvalues</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;)&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="L-1386"><a href="#L-1386"><span class="linenos">1386</span></a>
+</span><span id="L-1387"><a href="#L-1387"><span class="linenos">1387</span></a>    <span class="k">if</span> <span class="n">visualize</span><span class="p">:</span>
+</span><span id="L-1388"><a href="#L-1388"><span class="linenos">1388</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">matshow</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">1</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="L-1389"><a href="#L-1389"><span class="linenos">1389</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">set_cmap</span><span class="p">(</span><span class="s1">&#39;RdBu&#39;</span><span class="p">)</span>
+</span><span id="L-1390"><a href="#L-1390"><span class="linenos">1390</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">()</span>
+</span><span id="L-1391"><a href="#L-1391"><span class="linenos">1391</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="L-1392"><a href="#L-1392"><span class="linenos">1392</span></a>
+</span><span id="L-1393"><a href="#L-1393"><span class="linenos">1393</span></a>    <span class="k">if</span> <span class="n">correlation</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="L-1394"><a href="#L-1394"><span class="linenos">1394</span></a>        <span class="k">return</span> <span class="n">corr</span>
+</span><span id="L-1395"><a href="#L-1395"><span class="linenos">1395</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="L-1396"><a href="#L-1396"><span class="linenos">1396</span></a>        <span class="k">return</span> <span class="n">cov</span>
+</span><span id="L-1397"><a href="#L-1397"><span class="linenos">1397</span></a>
+</span><span id="L-1398"><a href="#L-1398"><span class="linenos">1398</span></a>
+</span><span id="L-1399"><a href="#L-1399"><span class="linenos">1399</span></a><span class="k">def</span> <span class="nf">_smooth_eigenvalues</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">E</span><span class="p">):</span>
+</span><span id="L-1400"><a href="#L-1400"><span class="linenos">1400</span></a>    <span class="sd">&quot;&quot;&quot;Eigenvalue smoothing as described in hep-lat/9412087</span>
+</span><span id="L-1401"><a href="#L-1401"><span class="linenos">1401</span></a>
+</span><span id="L-1402"><a href="#L-1402"><span class="linenos">1402</span></a><span class="sd">    corr : np.ndarray</span>
+</span><span id="L-1403"><a href="#L-1403"><span class="linenos">1403</span></a><span class="sd">        correlation matrix</span>
+</span><span id="L-1404"><a href="#L-1404"><span class="linenos">1404</span></a><span class="sd">    E : integer</span>
+</span><span id="L-1405"><a href="#L-1405"><span class="linenos">1405</span></a><span class="sd">        Number of eigenvalues to be left substantially unchanged</span>
+</span><span id="L-1406"><a href="#L-1406"><span class="linenos">1406</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1407"><a href="#L-1407"><span class="linenos">1407</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">2</span> <span class="o">&lt;</span> <span class="n">E</span> <span class="o">&lt;</span> <span class="n">corr</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+</span><span id="L-1408"><a href="#L-1408"><span class="linenos">1408</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;&#39;E&#39; has to be between 2 and the dimension of the correlation matrix minus 1 (</span><span class="si">{</span><span class="n">corr</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="si">}</span><span class="s2">).&quot;</span><span class="p">)</span>
+</span><span id="L-1409"><a href="#L-1409"><span class="linenos">1409</span></a>    <span class="n">vals</span><span class="p">,</span> <span class="n">vec</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
+</span><span id="L-1410"><a href="#L-1410"><span class="linenos">1410</span></a>    <span class="n">lambda_min</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">vals</span><span class="p">[:</span><span class="o">-</span><span class="n">E</span><span class="p">])</span>
+</span><span id="L-1411"><a href="#L-1411"><span class="linenos">1411</span></a>    <span class="n">vals</span><span class="p">[</span><span class="n">vals</span> <span class="o">&lt;</span> <span class="n">lambda_min</span><span class="p">]</span> <span class="o">=</span> <span class="n">lambda_min</span>
+</span><span id="L-1412"><a href="#L-1412"><span class="linenos">1412</span></a>    <span class="n">vals</span> <span class="o">/=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">vals</span><span class="p">)</span>
+</span><span id="L-1413"><a href="#L-1413"><span class="linenos">1413</span></a>    <span class="k">return</span> <span class="n">vec</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">vals</span><span class="p">)</span> <span class="o">@</span> <span class="n">vec</span><span class="o">.</span><span class="n">T</span>
+</span><span id="L-1414"><a href="#L-1414"><span class="linenos">1414</span></a>
+</span><span id="L-1415"><a href="#L-1415"><span class="linenos">1415</span></a>
+</span><span id="L-1416"><a href="#L-1416"><span class="linenos">1416</span></a><span class="k">def</span> <span class="nf">_covariance_element</span><span class="p">(</span><span class="n">obs1</span><span class="p">,</span> <span class="n">obs2</span><span class="p">):</span>
+</span><span id="L-1417"><a href="#L-1417"><span class="linenos">1417</span></a>    <span class="sd">&quot;&quot;&quot;Estimates the covariance of two Obs objects, neglecting autocorrelations.&quot;&quot;&quot;</span>
+</span><span id="L-1418"><a href="#L-1418"><span class="linenos">1418</span></a>
+</span><span id="L-1419"><a href="#L-1419"><span class="linenos">1419</span></a>    <span class="k">def</span> <span class="nf">calc_gamma</span><span class="p">(</span><span class="n">deltas1</span><span class="p">,</span> <span class="n">deltas2</span><span class="p">,</span> <span class="n">idx1</span><span class="p">,</span> <span class="n">idx2</span><span class="p">,</span> <span class="n">new_idx</span><span class="p">):</span>
+</span><span id="L-1420"><a href="#L-1420"><span class="linenos">1420</span></a>        <span class="n">deltas1</span> <span class="o">=</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">deltas1</span><span class="p">,</span> <span class="n">idx1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx1</span><span class="p">),</span> <span class="n">new_idx</span><span class="p">)</span>
+</span><span id="L-1421"><a href="#L-1421"><span class="linenos">1421</span></a>        <span class="n">deltas2</span> <span class="o">=</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">deltas2</span><span class="p">,</span> <span class="n">idx2</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx2</span><span class="p">),</span> <span class="n">new_idx</span><span class="p">)</span>
+</span><span id="L-1422"><a href="#L-1422"><span class="linenos">1422</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">deltas1</span> <span class="o">*</span> <span class="n">deltas2</span><span class="p">)</span>
+</span><span id="L-1423"><a href="#L-1423"><span class="linenos">1423</span></a>
+</span><span id="L-1424"><a href="#L-1424"><span class="linenos">1424</span></a>    <span class="k">if</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">obs2</span><span class="o">.</span><span class="n">names</span><span class="p">)):</span>
+</span><span id="L-1425"><a href="#L-1425"><span class="linenos">1425</span></a>        <span class="k">return</span> <span class="mf">0.0</span>
+</span><span id="L-1426"><a href="#L-1426"><span class="linenos">1426</span></a>
+</span><span id="L-1427"><a href="#L-1427"><span class="linenos">1427</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs1</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">)</span> <span class="ow">or</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">obs2</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="L-1428"><a href="#L-1428"><span class="linenos">1428</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The gamma method has to be applied to both Obs first.&#39;</span><span class="p">)</span>
+</span><span id="L-1429"><a href="#L-1429"><span class="linenos">1429</span></a>
+</span><span id="L-1430"><a href="#L-1430"><span class="linenos">1430</span></a>    <span class="n">dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-1431"><a href="#L-1431"><span class="linenos">1431</span></a>
+</span><span id="L-1432"><a href="#L-1432"><span class="linenos">1432</span></a>    <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
+</span><span id="L-1433"><a href="#L-1433"><span class="linenos">1433</span></a>
+</span><span id="L-1434"><a href="#L-1434"><span class="linenos">1434</span></a>        <span class="k">if</span> <span class="n">e_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
+</span><span id="L-1435"><a href="#L-1435"><span class="linenos">1435</span></a>            <span class="k">continue</span>
+</span><span id="L-1436"><a href="#L-1436"><span class="linenos">1436</span></a>
+</span><span id="L-1437"><a href="#L-1437"><span class="linenos">1437</span></a>        <span class="n">idl_d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1438"><a href="#L-1438"><span class="linenos">1438</span></a>        <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-1439"><a href="#L-1439"><span class="linenos">1439</span></a>            <span class="k">if</span> <span class="n">r_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-1440"><a href="#L-1440"><span class="linenos">1440</span></a>                <span class="k">continue</span>
+</span><span id="L-1441"><a href="#L-1441"><span class="linenos">1441</span></a>            <span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">([</span><span class="n">obs1</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]])</span>
+</span><span id="L-1442"><a href="#L-1442"><span class="linenos">1442</span></a>
+</span><span id="L-1443"><a href="#L-1443"><span class="linenos">1443</span></a>        <span class="n">gamma</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-1444"><a href="#L-1444"><span class="linenos">1444</span></a>
+</span><span id="L-1445"><a href="#L-1445"><span class="linenos">1445</span></a>        <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-1446"><a href="#L-1446"><span class="linenos">1446</span></a>            <span class="k">if</span> <span class="n">r_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-1447"><a href="#L-1447"><span class="linenos">1447</span></a>                <span class="k">continue</span>
+</span><span id="L-1448"><a href="#L-1448"><span class="linenos">1448</span></a>            <span class="n">gamma</span> <span class="o">+=</span> <span class="n">calc_gamma</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs1</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="L-1449"><a href="#L-1449"><span class="linenos">1449</span></a>
+</span><span id="L-1450"><a href="#L-1450"><span class="linenos">1450</span></a>        <span class="k">if</span> <span class="n">gamma</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="L-1451"><a href="#L-1451"><span class="linenos">1451</span></a>            <span class="k">continue</span>
+</span><span id="L-1452"><a href="#L-1452"><span class="linenos">1452</span></a>
+</span><span id="L-1453"><a href="#L-1453"><span class="linenos">1453</span></a>        <span class="n">gamma_div</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="L-1454"><a href="#L-1454"><span class="linenos">1454</span></a>        <span class="n">e_N</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="L-1455"><a href="#L-1455"><span class="linenos">1455</span></a>        <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-1456"><a href="#L-1456"><span class="linenos">1456</span></a>            <span class="k">if</span> <span class="n">r_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="L-1457"><a href="#L-1457"><span class="linenos">1457</span></a>                <span class="k">continue</span>
+</span><span id="L-1458"><a href="#L-1458"><span class="linenos">1458</span></a>            <span class="n">gamma_div</span> <span class="o">+=</span> <span class="n">calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="n">obs2</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="n">obs1</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">obs2</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="L-1459"><a href="#L-1459"><span class="linenos">1459</span></a>            <span class="n">e_N</span> <span class="o">+=</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl_d</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="L-1460"><a href="#L-1460"><span class="linenos">1460</span></a>        <span class="n">gamma</span> <span class="o">/=</span> <span class="nb">max</span><span class="p">(</span><span class="n">gamma_div</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">)</span>
+</span><span id="L-1461"><a href="#L-1461"><span class="linenos">1461</span></a>
+</span><span id="L-1462"><a href="#L-1462"><span class="linenos">1462</span></a>        <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
+</span><span id="L-1463"><a href="#L-1463"><span class="linenos">1463</span></a>        <span class="n">dvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">*</span> <span class="n">gamma</span> <span class="o">/</span> <span class="n">e_N</span>
+</span><span id="L-1464"><a href="#L-1464"><span class="linenos">1464</span></a>
+</span><span id="L-1465"><a href="#L-1465"><span class="linenos">1465</span></a>    <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="n">obs1</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="L-1466"><a href="#L-1466"><span class="linenos">1466</span></a>
+</span><span id="L-1467"><a href="#L-1467"><span class="linenos">1467</span></a>        <span class="k">if</span> <span class="n">e_name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">obs2</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="L-1468"><a href="#L-1468"><span class="linenos">1468</span></a>            <span class="k">continue</span>
+</span><span id="L-1469"><a href="#L-1469"><span class="linenos">1469</span></a>
+</span><span id="L-1470"><a href="#L-1470"><span class="linenos">1470</span></a>        <span class="n">dvalue</span> <span class="o">+=</span> <span class="nb">float</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">transpose</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">),</span> <span class="n">np</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">obs1</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">,</span> <span class="n">obs2</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span><span class="p">)))</span>
+</span><span id="L-1471"><a href="#L-1471"><span class="linenos">1471</span></a>
+</span><span id="L-1472"><a href="#L-1472"><span class="linenos">1472</span></a>    <span class="k">return</span> <span class="n">dvalue</span>
+</span><span id="L-1473"><a href="#L-1473"><span class="linenos">1473</span></a>
+</span><span id="L-1474"><a href="#L-1474"><span class="linenos">1474</span></a>
+</span><span id="L-1475"><a href="#L-1475"><span class="linenos">1475</span></a><span class="k">def</span> <span class="nf">import_jackknife</span><span class="p">(</span><span class="n">jacks</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-1476"><a href="#L-1476"><span class="linenos">1476</span></a>    <span class="sd">&quot;&quot;&quot;Imports jackknife samples and returns an Obs</span>
+</span><span id="L-1477"><a href="#L-1477"><span class="linenos">1477</span></a>
+</span><span id="L-1478"><a href="#L-1478"><span class="linenos">1478</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1479"><a href="#L-1479"><span class="linenos">1479</span></a><span class="sd">    ----------</span>
+</span><span id="L-1480"><a href="#L-1480"><span class="linenos">1480</span></a><span class="sd">    jacks : numpy.ndarray</span>
+</span><span id="L-1481"><a href="#L-1481"><span class="linenos">1481</span></a><span class="sd">        numpy array containing the mean value as zeroth entry and</span>
+</span><span id="L-1482"><a href="#L-1482"><span class="linenos">1482</span></a><span class="sd">        the N jackknife samples as first to Nth entry.</span>
+</span><span id="L-1483"><a href="#L-1483"><span class="linenos">1483</span></a><span class="sd">    name : str</span>
+</span><span id="L-1484"><a href="#L-1484"><span class="linenos">1484</span></a><span class="sd">        name of the ensemble the samples are defined on.</span>
+</span><span id="L-1485"><a href="#L-1485"><span class="linenos">1485</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1486"><a href="#L-1486"><span class="linenos">1486</span></a>    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">jacks</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="L-1487"><a href="#L-1487"><span class="linenos">1487</span></a>    <span class="n">prj</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span> <span class="o">-</span> <span class="p">(</span><span class="n">length</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">length</span><span class="p">))</span>
+</span><span id="L-1488"><a href="#L-1488"><span class="linenos">1488</span></a>    <span class="n">samples</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">@</span> <span class="n">prj</span>
+</span><span id="L-1489"><a href="#L-1489"><span class="linenos">1489</span></a>    <span class="n">mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span>
+</span><span id="L-1490"><a href="#L-1490"><span class="linenos">1490</span></a>    <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">samples</span> <span class="o">-</span> <span class="n">mean</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="p">[</span><span class="n">mean</span><span class="p">])</span>
+</span><span id="L-1491"><a href="#L-1491"><span class="linenos">1491</span></a>    <span class="n">new_obs</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-1492"><a href="#L-1492"><span class="linenos">1492</span></a>    <span class="k">return</span> <span class="n">new_obs</span>
+</span><span id="L-1493"><a href="#L-1493"><span class="linenos">1493</span></a>
+</span><span id="L-1494"><a href="#L-1494"><span class="linenos">1494</span></a>
+</span><span id="L-1495"><a href="#L-1495"><span class="linenos">1495</span></a><span class="k">def</span> <span class="nf">merge_obs</span><span class="p">(</span><span class="n">list_of_obs</span><span class="p">):</span>
+</span><span id="L-1496"><a href="#L-1496"><span class="linenos">1496</span></a>    <span class="sd">&quot;&quot;&quot;Combine all observables in list_of_obs into one new observable</span>
+</span><span id="L-1497"><a href="#L-1497"><span class="linenos">1497</span></a>
+</span><span id="L-1498"><a href="#L-1498"><span class="linenos">1498</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1499"><a href="#L-1499"><span class="linenos">1499</span></a><span class="sd">    ----------</span>
+</span><span id="L-1500"><a href="#L-1500"><span class="linenos">1500</span></a><span class="sd">    list_of_obs : list</span>
+</span><span id="L-1501"><a href="#L-1501"><span class="linenos">1501</span></a><span class="sd">        list of the Obs object to be combined</span>
+</span><span id="L-1502"><a href="#L-1502"><span class="linenos">1502</span></a>
+</span><span id="L-1503"><a href="#L-1503"><span class="linenos">1503</span></a><span class="sd">    Notes</span>
+</span><span id="L-1504"><a href="#L-1504"><span class="linenos">1504</span></a><span class="sd">    -----</span>
+</span><span id="L-1505"><a href="#L-1505"><span class="linenos">1505</span></a><span class="sd">    It is not possible to combine obs which are based on the same replicum</span>
+</span><span id="L-1506"><a href="#L-1506"><span class="linenos">1506</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1507"><a href="#L-1507"><span class="linenos">1507</span></a>    <span class="n">replist</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">list_of_obs</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">]</span>
+</span><span id="L-1508"><a href="#L-1508"><span class="linenos">1508</span></a>    <span class="k">if</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">replist</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
+</span><span id="L-1509"><a href="#L-1509"><span class="linenos">1509</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
+</span><span id="L-1510"><a href="#L-1510"><span class="linenos">1510</span></a>    <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">]):</span>
+</span><span id="L-1511"><a href="#L-1511"><span class="linenos">1511</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Not possible to merge data that contains covobs!&#39;</span><span class="p">)</span>
+</span><span id="L-1512"><a href="#L-1512"><span class="linenos">1512</span></a>    <span class="n">new_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1513"><a href="#L-1513"><span class="linenos">1513</span></a>    <span class="n">idl_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="L-1514"><a href="#L-1514"><span class="linenos">1514</span></a>    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">:</span>
+</span><span id="L-1515"><a href="#L-1515"><span class="linenos">1515</span></a>        <span class="n">new_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+</span><span id="L-1516"><a href="#L-1516"><span class="linenos">1516</span></a>                        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)</span> <span class="o">|</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">)})</span>
+</span><span id="L-1517"><a href="#L-1517"><span class="linenos">1517</span></a>        <span class="n">idl_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)})</span>
+</span><span id="L-1518"><a href="#L-1518"><span class="linenos">1518</span></a>
+</span><span id="L-1519"><a href="#L-1519"><span class="linenos">1519</span></a>    <span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">new_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+</span><span id="L-1520"><a href="#L-1520"><span class="linenos">1520</span></a>    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">new_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">],</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">])</span>
+</span><span id="L-1521"><a href="#L-1521"><span class="linenos">1521</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
+</span><span id="L-1522"><a href="#L-1522"><span class="linenos">1522</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">reweighted</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span>
+</span><span id="L-1523"><a href="#L-1523"><span class="linenos">1523</span></a>    <span class="k">return</span> <span class="n">o</span>
+</span><span id="L-1524"><a href="#L-1524"><span class="linenos">1524</span></a>
+</span><span id="L-1525"><a href="#L-1525"><span class="linenos">1525</span></a>
+</span><span id="L-1526"><a href="#L-1526"><span class="linenos">1526</span></a><span class="k">def</span> <span class="nf">cov_Obs</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="L-1527"><a href="#L-1527"><span class="linenos">1527</span></a>    <span class="sd">&quot;&quot;&quot;Create an Obs based on mean(s) and a covariance matrix</span>
+</span><span id="L-1528"><a href="#L-1528"><span class="linenos">1528</span></a>
+</span><span id="L-1529"><a href="#L-1529"><span class="linenos">1529</span></a><span class="sd">    Parameters</span>
+</span><span id="L-1530"><a href="#L-1530"><span class="linenos">1530</span></a><span class="sd">    ----------</span>
+</span><span id="L-1531"><a href="#L-1531"><span class="linenos">1531</span></a><span class="sd">    mean : list of floats or float</span>
+</span><span id="L-1532"><a href="#L-1532"><span class="linenos">1532</span></a><span class="sd">        N mean value(s) of the new Obs</span>
+</span><span id="L-1533"><a href="#L-1533"><span class="linenos">1533</span></a><span class="sd">    cov : list or array</span>
+</span><span id="L-1534"><a href="#L-1534"><span class="linenos">1534</span></a><span class="sd">        2d (NxN) Covariance matrix, 1d diagonal entries or 0d covariance</span>
+</span><span id="L-1535"><a href="#L-1535"><span class="linenos">1535</span></a><span class="sd">    name : str</span>
+</span><span id="L-1536"><a href="#L-1536"><span class="linenos">1536</span></a><span class="sd">        identifier for the covariance matrix</span>
+</span><span id="L-1537"><a href="#L-1537"><span class="linenos">1537</span></a><span class="sd">    grad : list or array</span>
+</span><span id="L-1538"><a href="#L-1538"><span class="linenos">1538</span></a><span class="sd">        Gradient of the Covobs wrt. the means belonging to cov.</span>
+</span><span id="L-1539"><a href="#L-1539"><span class="linenos">1539</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="L-1540"><a href="#L-1540"><span class="linenos">1540</span></a>
+</span><span id="L-1541"><a href="#L-1541"><span class="linenos">1541</span></a>    <span class="k">def</span> <span class="nf">covobs_to_obs</span><span class="p">(</span><span class="n">co</span><span class="p">):</span>
+</span><span id="L-1542"><a href="#L-1542"><span class="linenos">1542</span></a>        <span class="sd">&quot;&quot;&quot;Make an Obs out of a Covobs</span>
+</span><span id="L-1543"><a href="#L-1543"><span class="linenos">1543</span></a>
+</span><span id="L-1544"><a href="#L-1544"><span class="linenos">1544</span></a><span class="sd">        Parameters</span>
+</span><span id="L-1545"><a href="#L-1545"><span class="linenos">1545</span></a><span class="sd">        ----------</span>
+</span><span id="L-1546"><a href="#L-1546"><span class="linenos">1546</span></a><span class="sd">        co : Covobs</span>
+</span><span id="L-1547"><a href="#L-1547"><span class="linenos">1547</span></a><span class="sd">            Covobs to be embedded into the Obs</span>
+</span><span id="L-1548"><a href="#L-1548"><span class="linenos">1548</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="L-1549"><a href="#L-1549"><span class="linenos">1549</span></a>        <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[])</span>
+</span><span id="L-1550"><a href="#L-1550"><span class="linenos">1550</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">co</span><span class="o">.</span><span class="n">value</span>
+</span><span id="L-1551"><a href="#L-1551"><span class="linenos">1551</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
+</span><span id="L-1552"><a href="#L-1552"><span class="linenos">1552</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
+</span><span id="L-1553"><a href="#L-1553"><span class="linenos">1553</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
+</span><span id="L-1554"><a href="#L-1554"><span class="linenos">1554</span></a>        <span class="k">return</span> <span class="n">o</span>
+</span><span id="L-1555"><a href="#L-1555"><span class="linenos">1555</span></a>
+</span><span id="L-1556"><a href="#L-1556"><span class="linenos">1556</span></a>    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="L-1557"><a href="#L-1557"><span class="linenos">1557</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">)):</span>
+</span><span id="L-1558"><a href="#L-1558"><span class="linenos">1558</span></a>        <span class="n">means</span> <span class="o">=</span> <span class="p">[</span><span class="n">means</span><span class="p">]</span>
+</span><span id="L-1559"><a href="#L-1559"><span class="linenos">1559</span></a>
+</span><span id="L-1560"><a href="#L-1560"><span class="linenos">1560</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)):</span>
+</span><span id="L-1561"><a href="#L-1561"><span class="linenos">1561</span></a>        <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">covobs_to_obs</span><span class="p">(</span><span class="n">Covobs</span><span class="p">(</span><span class="n">means</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="n">i</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">grad</span><span class="p">)))</span>
+</span><span id="L-1562"><a href="#L-1562"><span class="linenos">1562</span></a>    <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">):</span>
+</span><span id="L-1563"><a href="#L-1563"><span class="linenos">1563</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You have to provide </span><span class="si">%d</span><span class="s1"> mean values!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
+</span><span id="L-1564"><a href="#L-1564"><span class="linenos">1564</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="L-1565"><a href="#L-1565"><span class="linenos">1565</span></a>        <span class="k">return</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="L-1566"><a href="#L-1566"><span class="linenos">1566</span></a>    <span class="k">return</span> <span class="n">ol</span>
+</span></pre></div>
 
         </details>
 
@@ -1891,807 +1892,808 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">class</span> <span class="nc">Obs</span><span class="p">:</span>
-    <span class="sd">&quot;&quot;&quot;Class for a general observable.</span>
-
-<span class="sd">    Instances of Obs are the basic objects of a pyerrors error analysis.</span>
-<span class="sd">    They are initialized with a list which contains arrays of samples for</span>
-<span class="sd">    different ensembles/replica and another list of same length which contains</span>
-<span class="sd">    the names of the ensembles/replica. Mathematical operations can be</span>
-<span class="sd">    performed on instances. The result is another instance of Obs. The error of</span>
-<span class="sd">    an instance can be computed with the gamma_method. Also contains additional</span>
-<span class="sd">    methods for output and visualization of the error calculation.</span>
-
-<span class="sd">    Attributes</span>
-<span class="sd">    ----------</span>
-<span class="sd">    S_global : float</span>
-<span class="sd">        Standard value for S (default 2.0)</span>
-<span class="sd">    S_dict : dict</span>
-<span class="sd">        Dictionary for S values. If an entry for a given ensemble</span>
-<span class="sd">        exists this overwrites the standard value for that ensemble.</span>
-<span class="sd">    tau_exp_global : float</span>
-<span class="sd">        Standard value for tau_exp (default 0.0)</span>
-<span class="sd">    tau_exp_dict : dict</span>
-<span class="sd">        Dictionary for tau_exp values. If an entry for a given ensemble exists</span>
-<span class="sd">        this overwrites the standard value for that ensemble.</span>
-<span class="sd">    N_sigma_global : float</span>
-<span class="sd">        Standard value for N_sigma (default 1.0)</span>
-<span class="sd">    N_sigma_dict : dict</span>
-<span class="sd">        Dictionary for N_sigma values. If an entry for a given ensemble exists</span>
-<span class="sd">        this overwrites the standard value for that ensemble.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">,</span> <span class="s1">&#39;shape&#39;</span><span class="p">,</span> <span class="s1">&#39;r_values&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">,</span> <span class="s1">&#39;N&#39;</span><span class="p">,</span> <span class="s1">&#39;_value&#39;</span><span class="p">,</span> <span class="s1">&#39;_dvalue&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="s1">&#39;S&#39;</span><span class="p">,</span> <span class="s1">&#39;tau_exp&#39;</span><span class="p">,</span> <span class="s1">&#39;N_sigma&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;e_dvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_dtauint&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;e_windowsize&#39;</span><span class="p">,</span> <span class="s1">&#39;e_rho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_drho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_dtauint&#39;</span><span class="p">,</span>
-                 <span class="s1">&#39;idl&#39;</span><span class="p">,</span> <span class="s1">&#39;is_merged&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="s1">&#39;_covobs&#39;</span><span class="p">,</span> <span class="s1">&#39;__dict__&#39;</span><span class="p">]</span>
-
-    <span class="n">S_global</span> <span class="o">=</span> <span class="mf">2.0</span>
-    <span class="n">S_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">tau_exp_global</span> <span class="o">=</span> <span class="mf">0.0</span>
-    <span class="n">tau_exp_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">N_sigma_global</span> <span class="o">=</span> <span class="mf">1.0</span>
-    <span class="n">N_sigma_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">filter_eps</span> <span class="o">=</span> <span class="mf">1e-10</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize Obs object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        samples : list</span>
-<span class="sd">            list of numpy arrays containing the Monte Carlo samples</span>
-<span class="sd">        names : list</span>
-<span class="sd">            list of strings labeling the individual samples</span>
-<span class="sd">        idl : list, optional</span>
-<span class="sd">            list of ranges or lists on which the samples are defined</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of samples and names incompatible.&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of idl incompatible with samples and names.&#39;</span><span class="p">)</span>
-            <span class="n">name_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">name_length</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">name_length</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">)):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;names are not unique.&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">names</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">min</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">samples</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Samples have to have at least 5 entries.&#39;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)):</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
-                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
-                    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
-                    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted idx for idl[</span><span class="si">%s</span><span class="s2">]&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;incompatible type for idl[</span><span class="si">%s</span><span class="s1">].&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span><span class="p">,</span> <span class="n">mean</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">))):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible samples and idx for </span><span class="si">%s</span><span class="s1">: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">/=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">False</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">value</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_value</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">dvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">e_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">]))</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">cov_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">()]))</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">mc_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]))</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">e_content</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="n">res</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-            <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">))</span>
-            <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-                <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e_name</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">res</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">covobs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Estimate the error and related properties of the Obs.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        S : float</span>
-<span class="sd">            specifies a custom value for the parameter S (default 2.0).</span>
-<span class="sd">            If set to 0 it is assumed that the data exhibits no</span>
-<span class="sd">            autocorrelation. In this case the error estimates coincides</span>
-<span class="sd">            with the sample standard error.</span>
-<span class="sd">        tau_exp : float</span>
-<span class="sd">            positive value triggers the critical slowing down analysis</span>
-<span class="sd">            (default 0.0).</span>
-<span class="sd">        N_sigma : float</span>
-<span class="sd">            number of standard deviations from zero until the tail is</span>
-<span class="sd">            attached to the autocorrelation function (default 1).</span>
-<span class="sd">        fft : bool</span>
-<span class="sd">            determines whether the fft algorithm is used for the computation</span>
-<span class="sd">            of the autocorrelation function (default True)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">e_content</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_content</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">e_gamma</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mi">0</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">S</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span> <span class="o">=</span> <span class="p">{}</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;fft&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
-            <span class="n">fft</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">fft</span> <span class="o">=</span> <span class="kc">True</span>
-
-        <span class="k">def</span> <span class="nf">_parse_kwarg</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">kwarg_name</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-                    <span class="k">if</span> <span class="n">tmp</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; has to be larger or equal to 0.&#39;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; is not in proper format.&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">):</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_global&#39;</span><span class="p">)</span>
-
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;S&#39;</span><span class="p">)</span>
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;tau_exp&#39;</span><span class="p">)</span>
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;N_sigma&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]])</span>
-            <span class="n">w_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span>
-            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
-
-            <span class="n">gamma_div</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">gamma_div</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])),</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
-            <span class="n">gamma_div</span><span class="p">[</span><span class="n">gamma_div</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.0</span>
-            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/=</span> <span class="n">gamma_div</span><span class="p">[:</span><span class="n">w_max</span><span class="p">]</span>
-
-            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">tiny</span><span class="p">:</span>  <span class="c1"># Prevent division by zero</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">continue</span>
-
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">/</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(([</span><span class="mf">0.5</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:])))</span>
-            <span class="c1"># Make sure no entry of tauint is smaller than 0.5</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="mf">0.5</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span>
-            <span class="c1"># hep-lat/0306017 eq. (42)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-
-            <span class="k">def</span> <span class="nf">_compute_drho</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-                <span class="n">tmp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">i</span><span class="p">]])</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="n">i</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">tmp</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-
-            <span class="n">_compute_drho</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
-                <span class="c1"># Critical slowing down analysis</span>
-                <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">&lt;=</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Need at least 8 samples for tau_exp error analysis&quot;</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
-                    <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
-                        <span class="c1"># Bias correction hep-lat/0306017 eq. (49) included</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>  <span class="c1"># The absolute makes sure, that the tail contribution is always positive</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-                        <span class="c1"># Error of tau_exp neglected so far, missing term: self.e_rho[e_name][n + 1] ** 2 * d_tau_exp ** 2</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
-                        <span class="k">break</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="p">(</span><span class="n">e_N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="c1"># Standard automatic windowing procedure</span>
-                    <span class="n">tau</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">((</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="n">g_w</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">/</span> <span class="n">tau</span><span class="p">)</span> <span class="o">-</span> <span class="n">tau</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">*</span> <span class="n">e_N</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">):</span>
-                        <span class="k">if</span> <span class="n">n</span> <span class="o">&lt;</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
-                            <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-                        <span class="k">if</span> <span class="n">g_w</span><span class="p">[</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>  <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
-                            <span class="k">break</span>
-
-            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">**</span> <span class="mi">2</span>
-
-        <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">**</span><span class="mi">2</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">)</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-        <span class="k">return</span>
-
-    <span class="k">def</span> <span class="nf">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Calculate Gamma_{AA} from the deltas, which are defined on idx.</span>
-<span class="sd">           idx is assumed to be a contiguous range (possibly with a stepsize != 1)</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        deltas : list</span>
-<span class="sd">            List of fluctuations</span>
-<span class="sd">        idx : list</span>
-<span class="sd">            List or range of configurations on which the deltas are defined.</span>
-<span class="sd">        shape : int</span>
-<span class="sd">            Number of configurations in idx.</span>
-<span class="sd">        w_max : int</span>
-<span class="sd">            Upper bound for the summation window.</span>
-<span class="sd">        fft : bool</span>
-<span class="sd">            determines whether the fft algorithm is used for the computation</span>
-<span class="sd">            of the autocorrelation function.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">gamma</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-        <span class="n">deltas</span> <span class="o">=</span> <span class="n">_expand_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">)</span>
-        <span class="n">new_shape</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">fft</span><span class="p">:</span>
-            <span class="n">max_gamma</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">new_shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span>
-            <span class="c1"># The padding for the fft has to be even</span>
-            <span class="n">padding</span> <span class="o">=</span> <span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span><span class="p">)</span> <span class="o">%</span> <span class="mi">2</span>
-            <span class="n">gamma</span><span class="p">[:</span><span class="n">max_gamma</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">irfft</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">rfft</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">padding</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)[:</span><span class="n">max_gamma</span><span class="p">]</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">w_max</span><span class="p">):</span>
-                <span class="k">if</span> <span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="n">gamma</span><span class="p">[</span><span class="n">n</span><span class="p">]</span> <span class="o">+=</span> <span class="n">deltas</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">:</span><span class="n">new_shape</span><span class="p">])</span>
-
-        <span class="k">return</span> <span class="n">gamma</span>
-
-    <span class="k">def</span> <span class="nf">details</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ens_content</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Output detailed properties of the Obs.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        ens_content : bool</span>
-<span class="sd">            print details about the ensembles and replica if true.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Description:&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">*</span> <span class="mi">100</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> (</span><span class="si">%3.3f%%</span><span class="s1">)&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">,</span> <span class="n">percentage</span><span class="p">))</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; Ensemble errors:&#39;</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> tau_exp = </span><span class="si">%3.2f</span><span class="s1">,  N_sigma = </span><span class="si">%1.0i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> S = </span><span class="si">%3.2f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-        <span class="k">if</span> <span class="n">ens_content</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensemble:&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensembles:&#39;</span><span class="p">)</span>
-            <span class="n">my_string_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">items</span><span class="p">()):</span>
-                <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
-                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Ensemble &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                        <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
-                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="nb">range</span><span class="p">):</span>
-                            <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
-                        <span class="k">else</span><span class="p">:</span>
-                            <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">sublist</span> <span class="o">=</span> <span class="p">[]</span>
-                        <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">value</span><span class="p">:</span>
-                            <span class="n">my_substring</span> <span class="o">=</span> <span class="s1">&#39;    &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Replicum &#39;&quot;</span> <span class="o">+</span> <span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                            <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
-                            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
-                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
-                            <span class="k">else</span><span class="p">:</span>
-                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
-                            <span class="n">sublist</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_substring</span><span class="p">)</span>
-
-                        <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sublist</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Covobs   &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                <span class="n">my_string_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_string</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">my_string_list</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">is_zero_within_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sigma</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within &#39;sigma&#39; standard errors.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        sigma : int</span>
-<span class="sd">            Number of standard errors used for the check.</span>
-
-<span class="sd">        Works only properly when the gamma method was run.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span> <span class="ow">or</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="n">sigma</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-
-    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-10</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within a given tolerance.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        atol : float</span>
-<span class="sd">            Absolute tolerance (for details see numpy documentation).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="o">.</span><span class="n">errsq</span><span class="p">(),</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
-
-    <span class="k">def</span> <span class="nf">plot_tauint</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot integrated autocorrelation time for each ensemble.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        save : str</span>
-<span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
-            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">base</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]]</span>
-                <span class="n">x_help</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
-                <span class="n">y_help</span> <span class="o">=</span> <span class="p">(</span><span class="n">x_help</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">x_help</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)))</span> <span class="o">+</span> <span class="n">base</span>
-                <span class="n">x_arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_arr</span><span class="p">,</span> <span class="n">y_help</span><span class="p">,</span> <span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
-                             <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
-                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, $\tau_\mathrm</span><span class="si">{exp}</span><span class="s1">$=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        save : str</span>
-<span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
-            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">length</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
-                         <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k-&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, tau\_exp=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No replica distribution for a single replicum (&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;)&#39;</span><span class="p">)</span>
-                <span class="k">continue</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">sub_r_mean</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-                <span class="n">sub_r_mean</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span>
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
-            <span class="n">sub_r_mean</span> <span class="o">/=</span> <span class="n">e_N</span>
-            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">arr</span><span class="p">[</span><span class="n">r</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="n">sub_r_mean</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_N</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">hist</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="n">rwidth</span><span class="o">=</span><span class="mf">0.8</span><span class="p">,</span> <span class="n">bins</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Replica distribution&#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39; (mean=0, var=1)&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">plot_history</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expand</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot derived Monte Carlo history for each ensemble</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        expand : bool</span>
-<span class="sd">            show expanded history for irregular Monte Carlo chains (default: True).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">tmp</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">tmp_expanded</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">tmp</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-                <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
-                    <span class="n">tmp_expanded</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_expand_deltas</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
-            <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">e_N</span><span class="p">)</span>
-            <span class="n">y_test</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
-                <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">y</span> <span class="o">=</span> <span class="n">y_test</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">e_N</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">skew: </span><span class="si">{</span><span class="n">skew</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">skewtest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">), kurtosis: </span><span class="si">{</span><span class="n">kurtosis</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">kurtosistest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">)&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="nf">plot_piechart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot piechart which shows the fractional contribution of each</span>
-<span class="sd">        ensemble to the error and returns a dictionary containing the fractions.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error is 0.0&#39;</span><span class="p">)</span>
-        <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
-        <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">pie</span><span class="p">(</span><span class="n">sizes</span><span class="p">,</span> <span class="n">labels</span><span class="o">=</span><span class="n">labels</span><span class="p">,</span> <span class="n">startangle</span><span class="o">=</span><span class="mi">90</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">axis</span><span class="p">(</span><span class="s1">&#39;equal&#39;</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">,</span> <span class="n">sizes</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Dump the Obs to a file &#39;name&#39; of chosen format.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        filename : str</span>
-<span class="sd">            name of the file to be saved.</span>
-<span class="sd">        datatype : str</span>
-<span class="sd">            Format of the exported file. Supported formats include</span>
-<span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
-<span class="sd">        description : str</span>
-<span class="sd">            Description for output file, only relevant for json.gz format.</span>
-<span class="sd">        path : str</span>
-<span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
-
-        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
-            <span class="n">dump_to_json</span><span class="p">([</span><span class="bp">self</span><span class="p">],</span> <span class="n">file_name</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
-            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
-                <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
-
-    <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Export jackknife samples from the Obs</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        numpy.ndarray</span>
-<span class="sd">            Returns a numpy array of length N + 1 where N is the number of samples</span>
-<span class="sd">            for the given ensemble and replicum. The zeroth entry of the array contains</span>
-<span class="sd">            the mean value of the Obs, entries 1 to N contain the N jackknife samples</span>
-<span class="sd">            derived from the Obs. The current implementation only works for observables</span>
-<span class="sd">            defined on exactly one ensemble and replicum. The derived jackknife samples</span>
-<span class="sd">            should agree with samples from a full jackknife analysis up to O(1/N).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;export_jackknife&#39; is only implemented for Obs defined on one ensemble and replicum.&quot;</span><span class="p">)</span>
-
-        <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-        <span class="n">n</span> <span class="o">=</span> <span class="n">full_data</span><span class="o">.</span><span class="n">size</span>
-        <span class="n">mean</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span>
-        <span class="n">tmp_jacks</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
-        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">mean</span> <span class="o">-</span> <span class="n">full_data</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">tmp_jacks</span>
-
-    <span class="k">def</span> <span class="fm">__float__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s1">&#39;Obs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-        <span class="n">fexp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">log10</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">))</span>
-        <span class="k">if</span> <span class="n">fexp</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s1">&#39;{:</span><span class="si">{form}</span><span class="s1">}(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">*</span> <span class="mi">10</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="n">fexp</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">form</span><span class="o">=</span><span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">fexp</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;f&#39;</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">fexp</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.1f}</span><span class="s1">(</span><span class="si">{:1.1f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.0f}</span><span class="s1">(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
-
-    <span class="c1"># Overload comparisons</span>
-    <span class="k">def</span> <span class="fm">__lt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__le__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;=</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__gt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__ge__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;=</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
-
-    <span class="k">def</span> <span class="fm">__ne__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="ow">not</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
-
-    <span class="c1"># Overload math operations</span>
-    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">+</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">*</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="nb">complex</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">-</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">y</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">/</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span> <span class="o">/</span> <span class="bp">self</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
-            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
-                <span class="k">return</span> <span class="bp">NotImplemented</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">y</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">y</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__rpow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">y</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="c1"># Overload numpy functions</span>
-    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-
-    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-
-    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs-13"><a href="#Obs-13"><span class="linenos"> 13</span></a><span class="k">class</span> <span class="nc">Obs</span><span class="p">:</span>
+</span><span id="Obs-14"><a href="#Obs-14"><span class="linenos"> 14</span></a>    <span class="sd">&quot;&quot;&quot;Class for a general observable.</span>
+</span><span id="Obs-15"><a href="#Obs-15"><span class="linenos"> 15</span></a>
+</span><span id="Obs-16"><a href="#Obs-16"><span class="linenos"> 16</span></a><span class="sd">    Instances of Obs are the basic objects of a pyerrors error analysis.</span>
+</span><span id="Obs-17"><a href="#Obs-17"><span class="linenos"> 17</span></a><span class="sd">    They are initialized with a list which contains arrays of samples for</span>
+</span><span id="Obs-18"><a href="#Obs-18"><span class="linenos"> 18</span></a><span class="sd">    different ensembles/replica and another list of same length which contains</span>
+</span><span id="Obs-19"><a href="#Obs-19"><span class="linenos"> 19</span></a><span class="sd">    the names of the ensembles/replica. Mathematical operations can be</span>
+</span><span id="Obs-20"><a href="#Obs-20"><span class="linenos"> 20</span></a><span class="sd">    performed on instances. The result is another instance of Obs. The error of</span>
+</span><span id="Obs-21"><a href="#Obs-21"><span class="linenos"> 21</span></a><span class="sd">    an instance can be computed with the gamma_method. Also contains additional</span>
+</span><span id="Obs-22"><a href="#Obs-22"><span class="linenos"> 22</span></a><span class="sd">    methods for output and visualization of the error calculation.</span>
+</span><span id="Obs-23"><a href="#Obs-23"><span class="linenos"> 23</span></a>
+</span><span id="Obs-24"><a href="#Obs-24"><span class="linenos"> 24</span></a><span class="sd">    Attributes</span>
+</span><span id="Obs-25"><a href="#Obs-25"><span class="linenos"> 25</span></a><span class="sd">    ----------</span>
+</span><span id="Obs-26"><a href="#Obs-26"><span class="linenos"> 26</span></a><span class="sd">    S_global : float</span>
+</span><span id="Obs-27"><a href="#Obs-27"><span class="linenos"> 27</span></a><span class="sd">        Standard value for S (default 2.0)</span>
+</span><span id="Obs-28"><a href="#Obs-28"><span class="linenos"> 28</span></a><span class="sd">    S_dict : dict</span>
+</span><span id="Obs-29"><a href="#Obs-29"><span class="linenos"> 29</span></a><span class="sd">        Dictionary for S values. If an entry for a given ensemble</span>
+</span><span id="Obs-30"><a href="#Obs-30"><span class="linenos"> 30</span></a><span class="sd">        exists this overwrites the standard value for that ensemble.</span>
+</span><span id="Obs-31"><a href="#Obs-31"><span class="linenos"> 31</span></a><span class="sd">    tau_exp_global : float</span>
+</span><span id="Obs-32"><a href="#Obs-32"><span class="linenos"> 32</span></a><span class="sd">        Standard value for tau_exp (default 0.0)</span>
+</span><span id="Obs-33"><a href="#Obs-33"><span class="linenos"> 33</span></a><span class="sd">    tau_exp_dict : dict</span>
+</span><span id="Obs-34"><a href="#Obs-34"><span class="linenos"> 34</span></a><span class="sd">        Dictionary for tau_exp values. If an entry for a given ensemble exists</span>
+</span><span id="Obs-35"><a href="#Obs-35"><span class="linenos"> 35</span></a><span class="sd">        this overwrites the standard value for that ensemble.</span>
+</span><span id="Obs-36"><a href="#Obs-36"><span class="linenos"> 36</span></a><span class="sd">    N_sigma_global : float</span>
+</span><span id="Obs-37"><a href="#Obs-37"><span class="linenos"> 37</span></a><span class="sd">        Standard value for N_sigma (default 1.0)</span>
+</span><span id="Obs-38"><a href="#Obs-38"><span class="linenos"> 38</span></a><span class="sd">    N_sigma_dict : dict</span>
+</span><span id="Obs-39"><a href="#Obs-39"><span class="linenos"> 39</span></a><span class="sd">        Dictionary for N_sigma values. If an entry for a given ensemble exists</span>
+</span><span id="Obs-40"><a href="#Obs-40"><span class="linenos"> 40</span></a><span class="sd">        this overwrites the standard value for that ensemble.</span>
+</span><span id="Obs-41"><a href="#Obs-41"><span class="linenos"> 41</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="Obs-42"><a href="#Obs-42"><span class="linenos"> 42</span></a>    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;names&#39;</span><span class="p">,</span> <span class="s1">&#39;shape&#39;</span><span class="p">,</span> <span class="s1">&#39;r_values&#39;</span><span class="p">,</span> <span class="s1">&#39;deltas&#39;</span><span class="p">,</span> <span class="s1">&#39;N&#39;</span><span class="p">,</span> <span class="s1">&#39;_value&#39;</span><span class="p">,</span> <span class="s1">&#39;_dvalue&#39;</span><span class="p">,</span>
+</span><span id="Obs-43"><a href="#Obs-43"><span class="linenos"> 43</span></a>                 <span class="s1">&#39;ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;reweighted&#39;</span><span class="p">,</span> <span class="s1">&#39;S&#39;</span><span class="p">,</span> <span class="s1">&#39;tau_exp&#39;</span><span class="p">,</span> <span class="s1">&#39;N_sigma&#39;</span><span class="p">,</span>
+</span><span id="Obs-44"><a href="#Obs-44"><span class="linenos"> 44</span></a>                 <span class="s1">&#39;e_dvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_ddvalue&#39;</span><span class="p">,</span> <span class="s1">&#39;e_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_dtauint&#39;</span><span class="p">,</span>
+</span><span id="Obs-45"><a href="#Obs-45"><span class="linenos"> 45</span></a>                 <span class="s1">&#39;e_windowsize&#39;</span><span class="p">,</span> <span class="s1">&#39;e_rho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_drho&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_tauint&#39;</span><span class="p">,</span> <span class="s1">&#39;e_n_dtauint&#39;</span><span class="p">,</span>
+</span><span id="Obs-46"><a href="#Obs-46"><span class="linenos"> 46</span></a>                 <span class="s1">&#39;idl&#39;</span><span class="p">,</span> <span class="s1">&#39;is_merged&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">,</span> <span class="s1">&#39;_covobs&#39;</span><span class="p">,</span> <span class="s1">&#39;__dict__&#39;</span><span class="p">]</span>
+</span><span id="Obs-47"><a href="#Obs-47"><span class="linenos"> 47</span></a>
+</span><span id="Obs-48"><a href="#Obs-48"><span class="linenos"> 48</span></a>    <span class="n">S_global</span> <span class="o">=</span> <span class="mf">2.0</span>
+</span><span id="Obs-49"><a href="#Obs-49"><span class="linenos"> 49</span></a>    <span class="n">S_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-50"><a href="#Obs-50"><span class="linenos"> 50</span></a>    <span class="n">tau_exp_global</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-51"><a href="#Obs-51"><span class="linenos"> 51</span></a>    <span class="n">tau_exp_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-52"><a href="#Obs-52"><span class="linenos"> 52</span></a>    <span class="n">N_sigma_global</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="Obs-53"><a href="#Obs-53"><span class="linenos"> 53</span></a>    <span class="n">N_sigma_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-54"><a href="#Obs-54"><span class="linenos"> 54</span></a>    <span class="n">filter_eps</span> <span class="o">=</span> <span class="mf">1e-10</span>
+</span><span id="Obs-55"><a href="#Obs-55"><span class="linenos"> 55</span></a>
+</span><span id="Obs-56"><a href="#Obs-56"><span class="linenos"> 56</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Obs-57"><a href="#Obs-57"><span class="linenos"> 57</span></a>        <span class="sd">&quot;&quot;&quot; Initialize Obs object.</span>
+</span><span id="Obs-58"><a href="#Obs-58"><span class="linenos"> 58</span></a>
+</span><span id="Obs-59"><a href="#Obs-59"><span class="linenos"> 59</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-60"><a href="#Obs-60"><span class="linenos"> 60</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-61"><a href="#Obs-61"><span class="linenos"> 61</span></a><span class="sd">        samples : list</span>
+</span><span id="Obs-62"><a href="#Obs-62"><span class="linenos"> 62</span></a><span class="sd">            list of numpy arrays containing the Monte Carlo samples</span>
+</span><span id="Obs-63"><a href="#Obs-63"><span class="linenos"> 63</span></a><span class="sd">        names : list</span>
+</span><span id="Obs-64"><a href="#Obs-64"><span class="linenos"> 64</span></a><span class="sd">            list of strings labeling the individual samples</span>
+</span><span id="Obs-65"><a href="#Obs-65"><span class="linenos"> 65</span></a><span class="sd">        idl : list, optional</span>
+</span><span id="Obs-66"><a href="#Obs-66"><span class="linenos"> 66</span></a><span class="sd">            list of ranges or lists on which the samples are defined</span>
+</span><span id="Obs-67"><a href="#Obs-67"><span class="linenos"> 67</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-68"><a href="#Obs-68"><span class="linenos"> 68</span></a>
+</span><span id="Obs-69"><a href="#Obs-69"><span class="linenos"> 69</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
+</span><span id="Obs-70"><a href="#Obs-70"><span class="linenos"> 70</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
+</span><span id="Obs-71"><a href="#Obs-71"><span class="linenos"> 71</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of samples and names incompatible.&#39;</span><span class="p">)</span>
+</span><span id="Obs-72"><a href="#Obs-72"><span class="linenos"> 72</span></a>            <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs-73"><a href="#Obs-73"><span class="linenos"> 73</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
+</span><span id="Obs-74"><a href="#Obs-74"><span class="linenos"> 74</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of idl incompatible with samples and names.&#39;</span><span class="p">)</span>
+</span><span id="Obs-75"><a href="#Obs-75"><span class="linenos"> 75</span></a>            <span class="n">name_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
+</span><span id="Obs-76"><a href="#Obs-76"><span class="linenos"> 76</span></a>            <span class="k">if</span> <span class="n">name_length</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-77"><a href="#Obs-77"><span class="linenos"> 77</span></a>                <span class="k">if</span> <span class="n">name_length</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">)):</span>
+</span><span id="Obs-78"><a href="#Obs-78"><span class="linenos"> 78</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;names are not unique.&#39;</span><span class="p">)</span>
+</span><span id="Obs-79"><a href="#Obs-79"><span class="linenos"> 79</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">names</span><span class="p">):</span>
+</span><span id="Obs-80"><a href="#Obs-80"><span class="linenos"> 80</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
+</span><span id="Obs-81"><a href="#Obs-81"><span class="linenos"> 81</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-82"><a href="#Obs-82"><span class="linenos"> 82</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="Obs-83"><a href="#Obs-83"><span class="linenos"> 83</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
+</span><span id="Obs-84"><a href="#Obs-84"><span class="linenos"> 84</span></a>            <span class="k">if</span> <span class="nb">min</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">samples</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="Obs-85"><a href="#Obs-85"><span class="linenos"> 85</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Samples have to have at least 5 entries.&#39;</span><span class="p">)</span>
+</span><span id="Obs-86"><a href="#Obs-86"><span class="linenos"> 86</span></a>
+</span><span id="Obs-87"><a href="#Obs-87"><span class="linenos"> 87</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
+</span><span id="Obs-88"><a href="#Obs-88"><span class="linenos"> 88</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-89"><a href="#Obs-89"><span class="linenos"> 89</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-90"><a href="#Obs-90"><span class="linenos"> 90</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-91"><a href="#Obs-91"><span class="linenos"> 91</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-92"><a href="#Obs-92"><span class="linenos"> 92</span></a>
+</span><span id="Obs-93"><a href="#Obs-93"><span class="linenos"> 93</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-94"><a href="#Obs-94"><span class="linenos"> 94</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-95"><a href="#Obs-95"><span class="linenos"> 95</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-96"><a href="#Obs-96"><span class="linenos"> 96</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-97"><a href="#Obs-97"><span class="linenos"> 97</span></a>        <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs-98"><a href="#Obs-98"><span class="linenos"> 98</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)):</span>
+</span><span id="Obs-99"><a href="#Obs-99"><span class="linenos"> 99</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs-100"><a href="#Obs-100"><span class="linenos">100</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
+</span><span id="Obs-101"><a href="#Obs-101"><span class="linenos">101</span></a>                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
+</span><span id="Obs-102"><a href="#Obs-102"><span class="linenos">102</span></a>                    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
+</span><span id="Obs-103"><a href="#Obs-103"><span class="linenos">103</span></a>                    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="Obs-104"><a href="#Obs-104"><span class="linenos">104</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted idx for idl[</span><span class="si">%s</span><span class="s2">]&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="Obs-105"><a href="#Obs-105"><span class="linenos">105</span></a>                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-106"><a href="#Obs-106"><span class="linenos">106</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="Obs-107"><a href="#Obs-107"><span class="linenos">107</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-108"><a href="#Obs-108"><span class="linenos">108</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
+</span><span id="Obs-109"><a href="#Obs-109"><span class="linenos">109</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-110"><a href="#Obs-110"><span class="linenos">110</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;incompatible type for idl[</span><span class="si">%s</span><span class="s1">].&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="Obs-111"><a href="#Obs-111"><span class="linenos">111</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-112"><a href="#Obs-112"><span class="linenos">112</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
+</span><span id="Obs-113"><a href="#Obs-113"><span class="linenos">113</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-114"><a href="#Obs-114"><span class="linenos">114</span></a>
+</span><span id="Obs-115"><a href="#Obs-115"><span class="linenos">115</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs-116"><a href="#Obs-116"><span class="linenos">116</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span><span class="p">,</span> <span class="n">mean</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">))):</span>
+</span><span id="Obs-117"><a href="#Obs-117"><span class="linenos">117</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="Obs-118"><a href="#Obs-118"><span class="linenos">118</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs-119"><a href="#Obs-119"><span class="linenos">119</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="Obs-120"><a href="#Obs-120"><span class="linenos">120</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span>
+</span><span id="Obs-121"><a href="#Obs-121"><span class="linenos">121</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-122"><a href="#Obs-122"><span class="linenos">122</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
+</span><span id="Obs-123"><a href="#Obs-123"><span class="linenos">123</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="Obs-124"><a href="#Obs-124"><span class="linenos">124</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs-125"><a href="#Obs-125"><span class="linenos">125</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="Obs-126"><a href="#Obs-126"><span class="linenos">126</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible samples and idx for </span><span class="si">%s</span><span class="s1">: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
+</span><span id="Obs-127"><a href="#Obs-127"><span class="linenos">127</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span>
+</span><span id="Obs-128"><a href="#Obs-128"><span class="linenos">128</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs-129"><a href="#Obs-129"><span class="linenos">129</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs-130"><a href="#Obs-130"><span class="linenos">130</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">/=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
+</span><span id="Obs-131"><a href="#Obs-131"><span class="linenos">131</span></a>
+</span><span id="Obs-132"><a href="#Obs-132"><span class="linenos">132</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-133"><a href="#Obs-133"><span class="linenos">133</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-134"><a href="#Obs-134"><span class="linenos">134</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="Obs-135"><a href="#Obs-135"><span class="linenos">135</span></a>
+</span><span id="Obs-136"><a href="#Obs-136"><span class="linenos">136</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="Obs-137"><a href="#Obs-137"><span class="linenos">137</span></a>
+</span><span id="Obs-138"><a href="#Obs-138"><span class="linenos">138</span></a>    <span class="nd">@property</span>
+</span><span id="Obs-139"><a href="#Obs-139"><span class="linenos">139</span></a>    <span class="k">def</span> <span class="nf">value</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-140"><a href="#Obs-140"><span class="linenos">140</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_value</span>
+</span><span id="Obs-141"><a href="#Obs-141"><span class="linenos">141</span></a>
+</span><span id="Obs-142"><a href="#Obs-142"><span class="linenos">142</span></a>    <span class="nd">@property</span>
+</span><span id="Obs-143"><a href="#Obs-143"><span class="linenos">143</span></a>    <span class="k">def</span> <span class="nf">dvalue</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-144"><a href="#Obs-144"><span class="linenos">144</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span><span id="Obs-145"><a href="#Obs-145"><span class="linenos">145</span></a>
+</span><span id="Obs-146"><a href="#Obs-146"><span class="linenos">146</span></a>    <span class="nd">@property</span>
+</span><span id="Obs-147"><a href="#Obs-147"><span class="linenos">147</span></a>    <span class="k">def</span> <span class="nf">e_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-148"><a href="#Obs-148"><span class="linenos">148</span></a>        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">]))</span>
+</span><span id="Obs-149"><a href="#Obs-149"><span class="linenos">149</span></a>
+</span><span id="Obs-150"><a href="#Obs-150"><span class="linenos">150</span></a>    <span class="nd">@property</span>
+</span><span id="Obs-151"><a href="#Obs-151"><span class="linenos">151</span></a>    <span class="k">def</span> <span class="nf">cov_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-152"><a href="#Obs-152"><span class="linenos">152</span></a>        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">()]))</span>
+</span><span id="Obs-153"><a href="#Obs-153"><span class="linenos">153</span></a>
+</span><span id="Obs-154"><a href="#Obs-154"><span class="linenos">154</span></a>    <span class="nd">@property</span>
+</span><span id="Obs-155"><a href="#Obs-155"><span class="linenos">155</span></a>    <span class="k">def</span> <span class="nf">mc_names</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-156"><a href="#Obs-156"><span class="linenos">156</span></a>        <span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;|&#39;</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]))</span>
+</span><span id="Obs-157"><a href="#Obs-157"><span class="linenos">157</span></a>
+</span><span id="Obs-158"><a href="#Obs-158"><span class="linenos">158</span></a>    <span class="nd">@property</span>
+</span><span id="Obs-159"><a href="#Obs-159"><span class="linenos">159</span></a>    <span class="k">def</span> <span class="nf">e_content</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-160"><a href="#Obs-160"><span class="linenos">160</span></a>        <span class="n">res</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-161"><a href="#Obs-161"><span class="linenos">161</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="Obs-162"><a href="#Obs-162"><span class="linenos">162</span></a>            <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;|&#39;</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">))</span>
+</span><span id="Obs-163"><a href="#Obs-163"><span class="linenos">163</span></a>            <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="Obs-164"><a href="#Obs-164"><span class="linenos">164</span></a>                <span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e_name</span><span class="p">)</span>
+</span><span id="Obs-165"><a href="#Obs-165"><span class="linenos">165</span></a>        <span class="k">return</span> <span class="n">res</span>
+</span><span id="Obs-166"><a href="#Obs-166"><span class="linenos">166</span></a>
+</span><span id="Obs-167"><a href="#Obs-167"><span class="linenos">167</span></a>    <span class="nd">@property</span>
+</span><span id="Obs-168"><a href="#Obs-168"><span class="linenos">168</span></a>    <span class="k">def</span> <span class="nf">covobs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-169"><a href="#Obs-169"><span class="linenos">169</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span>
+</span><span id="Obs-170"><a href="#Obs-170"><span class="linenos">170</span></a>
+</span><span id="Obs-171"><a href="#Obs-171"><span class="linenos">171</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Obs-172"><a href="#Obs-172"><span class="linenos">172</span></a>        <span class="sd">&quot;&quot;&quot;Estimate the error and related properties of the Obs.</span>
+</span><span id="Obs-173"><a href="#Obs-173"><span class="linenos">173</span></a>
+</span><span id="Obs-174"><a href="#Obs-174"><span class="linenos">174</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-175"><a href="#Obs-175"><span class="linenos">175</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-176"><a href="#Obs-176"><span class="linenos">176</span></a><span class="sd">        S : float</span>
+</span><span id="Obs-177"><a href="#Obs-177"><span class="linenos">177</span></a><span class="sd">            specifies a custom value for the parameter S (default 2.0).</span>
+</span><span id="Obs-178"><a href="#Obs-178"><span class="linenos">178</span></a><span class="sd">            If set to 0 it is assumed that the data exhibits no</span>
+</span><span id="Obs-179"><a href="#Obs-179"><span class="linenos">179</span></a><span class="sd">            autocorrelation. In this case the error estimates coincides</span>
+</span><span id="Obs-180"><a href="#Obs-180"><span class="linenos">180</span></a><span class="sd">            with the sample standard error.</span>
+</span><span id="Obs-181"><a href="#Obs-181"><span class="linenos">181</span></a><span class="sd">        tau_exp : float</span>
+</span><span id="Obs-182"><a href="#Obs-182"><span class="linenos">182</span></a><span class="sd">            positive value triggers the critical slowing down analysis</span>
+</span><span id="Obs-183"><a href="#Obs-183"><span class="linenos">183</span></a><span class="sd">            (default 0.0).</span>
+</span><span id="Obs-184"><a href="#Obs-184"><span class="linenos">184</span></a><span class="sd">        N_sigma : float</span>
+</span><span id="Obs-185"><a href="#Obs-185"><span class="linenos">185</span></a><span class="sd">            number of standard deviations from zero until the tail is</span>
+</span><span id="Obs-186"><a href="#Obs-186"><span class="linenos">186</span></a><span class="sd">            attached to the autocorrelation function (default 1).</span>
+</span><span id="Obs-187"><a href="#Obs-187"><span class="linenos">187</span></a><span class="sd">        fft : bool</span>
+</span><span id="Obs-188"><a href="#Obs-188"><span class="linenos">188</span></a><span class="sd">            determines whether the fft algorithm is used for the computation</span>
+</span><span id="Obs-189"><a href="#Obs-189"><span class="linenos">189</span></a><span class="sd">            of the autocorrelation function (default True)</span>
+</span><span id="Obs-190"><a href="#Obs-190"><span class="linenos">190</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-191"><a href="#Obs-191"><span class="linenos">191</span></a>
+</span><span id="Obs-192"><a href="#Obs-192"><span class="linenos">192</span></a>        <span class="n">e_content</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_content</span>
+</span><span id="Obs-193"><a href="#Obs-193"><span class="linenos">193</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-194"><a href="#Obs-194"><span class="linenos">194</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-195"><a href="#Obs-195"><span class="linenos">195</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-196"><a href="#Obs-196"><span class="linenos">196</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-197"><a href="#Obs-197"><span class="linenos">197</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-198"><a href="#Obs-198"><span class="linenos">198</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-199"><a href="#Obs-199"><span class="linenos">199</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-200"><a href="#Obs-200"><span class="linenos">200</span></a>        <span class="n">e_gamma</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-201"><a href="#Obs-201"><span class="linenos">201</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-202"><a href="#Obs-202"><span class="linenos">202</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-203"><a href="#Obs-203"><span class="linenos">203</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-204"><a href="#Obs-204"><span class="linenos">204</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-205"><a href="#Obs-205"><span class="linenos">205</span></a>
+</span><span id="Obs-206"><a href="#Obs-206"><span class="linenos">206</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">S</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-207"><a href="#Obs-207"><span class="linenos">207</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-208"><a href="#Obs-208"><span class="linenos">208</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs-209"><a href="#Obs-209"><span class="linenos">209</span></a>
+</span><span id="Obs-210"><a href="#Obs-210"><span class="linenos">210</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;fft&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
+</span><span id="Obs-211"><a href="#Obs-211"><span class="linenos">211</span></a>            <span class="n">fft</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="Obs-212"><a href="#Obs-212"><span class="linenos">212</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-213"><a href="#Obs-213"><span class="linenos">213</span></a>            <span class="n">fft</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="Obs-214"><a href="#Obs-214"><span class="linenos">214</span></a>
+</span><span id="Obs-215"><a href="#Obs-215"><span class="linenos">215</span></a>        <span class="k">def</span> <span class="nf">_parse_kwarg</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">):</span>
+</span><span id="Obs-216"><a href="#Obs-216"><span class="linenos">216</span></a>            <span class="k">if</span> <span class="n">kwarg_name</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="Obs-217"><a href="#Obs-217"><span class="linenos">217</span></a>                <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
+</span><span id="Obs-218"><a href="#Obs-218"><span class="linenos">218</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+</span><span id="Obs-219"><a href="#Obs-219"><span class="linenos">219</span></a>                    <span class="k">if</span> <span class="n">tmp</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs-220"><a href="#Obs-220"><span class="linenos">220</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; has to be larger or equal to 0.&#39;</span><span class="p">)</span>
+</span><span id="Obs-221"><a href="#Obs-221"><span class="linenos">221</span></a>                    <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="Obs-222"><a href="#Obs-222"><span class="linenos">222</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
+</span><span id="Obs-223"><a href="#Obs-223"><span class="linenos">223</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-224"><a href="#Obs-224"><span class="linenos">224</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; is not in proper format.&#39;</span><span class="p">)</span>
+</span><span id="Obs-225"><a href="#Obs-225"><span class="linenos">225</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-226"><a href="#Obs-226"><span class="linenos">226</span></a>                <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="Obs-227"><a href="#Obs-227"><span class="linenos">227</span></a>                    <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">):</span>
+</span><span id="Obs-228"><a href="#Obs-228"><span class="linenos">228</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span>
+</span><span id="Obs-229"><a href="#Obs-229"><span class="linenos">229</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-230"><a href="#Obs-230"><span class="linenos">230</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_global&#39;</span><span class="p">)</span>
+</span><span id="Obs-231"><a href="#Obs-231"><span class="linenos">231</span></a>
+</span><span id="Obs-232"><a href="#Obs-232"><span class="linenos">232</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;S&#39;</span><span class="p">)</span>
+</span><span id="Obs-233"><a href="#Obs-233"><span class="linenos">233</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;tau_exp&#39;</span><span class="p">)</span>
+</span><span id="Obs-234"><a href="#Obs-234"><span class="linenos">234</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;N_sigma&#39;</span><span class="p">)</span>
+</span><span id="Obs-235"><a href="#Obs-235"><span class="linenos">235</span></a>
+</span><span id="Obs-236"><a href="#Obs-236"><span class="linenos">236</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs-237"><a href="#Obs-237"><span class="linenos">237</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs-238"><a href="#Obs-238"><span class="linenos">238</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="Obs-239"><a href="#Obs-239"><span class="linenos">239</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs-240"><a href="#Obs-240"><span class="linenos">240</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="Obs-241"><a href="#Obs-241"><span class="linenos">241</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-242"><a href="#Obs-242"><span class="linenos">242</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs-243"><a href="#Obs-243"><span class="linenos">243</span></a>
+</span><span id="Obs-244"><a href="#Obs-244"><span class="linenos">244</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]])</span>
+</span><span id="Obs-245"><a href="#Obs-245"><span class="linenos">245</span></a>            <span class="n">w_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span>
+</span><span id="Obs-246"><a href="#Obs-246"><span class="linenos">246</span></a>            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs-247"><a href="#Obs-247"><span class="linenos">247</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs-248"><a href="#Obs-248"><span class="linenos">248</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs-249"><a href="#Obs-249"><span class="linenos">249</span></a>
+</span><span id="Obs-250"><a href="#Obs-250"><span class="linenos">250</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="Obs-251"><a href="#Obs-251"><span class="linenos">251</span></a>                <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
+</span><span id="Obs-252"><a href="#Obs-252"><span class="linenos">252</span></a>
+</span><span id="Obs-253"><a href="#Obs-253"><span class="linenos">253</span></a>            <span class="n">gamma_div</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs-254"><a href="#Obs-254"><span class="linenos">254</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="Obs-255"><a href="#Obs-255"><span class="linenos">255</span></a>                <span class="n">gamma_div</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])),</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
+</span><span id="Obs-256"><a href="#Obs-256"><span class="linenos">256</span></a>            <span class="n">gamma_div</span><span class="p">[</span><span class="n">gamma_div</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="Obs-257"><a href="#Obs-257"><span class="linenos">257</span></a>            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/=</span> <span class="n">gamma_div</span><span class="p">[:</span><span class="n">w_max</span><span class="p">]</span>
+</span><span id="Obs-258"><a href="#Obs-258"><span class="linenos">258</span></a>
+</span><span id="Obs-259"><a href="#Obs-259"><span class="linenos">259</span></a>            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">tiny</span><span class="p">:</span>  <span class="c1"># Prevent division by zero</span>
+</span><span id="Obs-260"><a href="#Obs-260"><span class="linenos">260</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
+</span><span id="Obs-261"><a href="#Obs-261"><span class="linenos">261</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-262"><a href="#Obs-262"><span class="linenos">262</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-263"><a href="#Obs-263"><span class="linenos">263</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-264"><a href="#Obs-264"><span class="linenos">264</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-265"><a href="#Obs-265"><span class="linenos">265</span></a>                <span class="k">continue</span>
+</span><span id="Obs-266"><a href="#Obs-266"><span class="linenos">266</span></a>
+</span><span id="Obs-267"><a href="#Obs-267"><span class="linenos">267</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">/</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Obs-268"><a href="#Obs-268"><span class="linenos">268</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(([</span><span class="mf">0.5</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:])))</span>
+</span><span id="Obs-269"><a href="#Obs-269"><span class="linenos">269</span></a>            <span class="c1"># Make sure no entry of tauint is smaller than 0.5</span>
+</span><span id="Obs-270"><a href="#Obs-270"><span class="linenos">270</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="mf">0.5</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span>
+</span><span id="Obs-271"><a href="#Obs-271"><span class="linenos">271</span></a>            <span class="c1"># hep-lat/0306017 eq. (42)</span>
+</span><span id="Obs-272"><a href="#Obs-272"><span class="linenos">272</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-273"><a href="#Obs-273"><span class="linenos">273</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-274"><a href="#Obs-274"><span class="linenos">274</span></a>
+</span><span id="Obs-275"><a href="#Obs-275"><span class="linenos">275</span></a>            <span class="k">def</span> <span class="nf">_compute_drho</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="Obs-276"><a href="#Obs-276"><span class="linenos">276</span></a>                <span class="n">tmp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">i</span><span class="p">]])</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="n">i</span><span class="p">]</span>
+</span><span id="Obs-277"><a href="#Obs-277"><span class="linenos">277</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">tmp</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-278"><a href="#Obs-278"><span class="linenos">278</span></a>
+</span><span id="Obs-279"><a href="#Obs-279"><span class="linenos">279</span></a>            <span class="n">_compute_drho</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-280"><a href="#Obs-280"><span class="linenos">280</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs-281"><a href="#Obs-281"><span class="linenos">281</span></a>                <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
+</span><span id="Obs-282"><a href="#Obs-282"><span class="linenos">282</span></a>                <span class="c1"># Critical slowing down analysis</span>
+</span><span id="Obs-283"><a href="#Obs-283"><span class="linenos">283</span></a>                <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">&lt;=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-284"><a href="#Obs-284"><span class="linenos">284</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Need at least 8 samples for tau_exp error analysis&quot;</span><span class="p">)</span>
+</span><span id="Obs-285"><a href="#Obs-285"><span class="linenos">285</span></a>                <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="Obs-286"><a href="#Obs-286"><span class="linenos">286</span></a>                    <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-287"><a href="#Obs-287"><span class="linenos">287</span></a>                    <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Obs-288"><a href="#Obs-288"><span class="linenos">288</span></a>                        <span class="c1"># Bias correction hep-lat/0306017 eq. (49) included</span>
+</span><span id="Obs-289"><a href="#Obs-289"><span class="linenos">289</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>  <span class="c1"># The absolute makes sure, that the tail contribution is always positive</span>
+</span><span id="Obs-290"><a href="#Obs-290"><span class="linenos">290</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="Obs-291"><a href="#Obs-291"><span class="linenos">291</span></a>                        <span class="c1"># Error of tau_exp neglected so far, missing term: self.e_rho[e_name][n + 1] ** 2 * d_tau_exp ** 2</span>
+</span><span id="Obs-292"><a href="#Obs-292"><span class="linenos">292</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-293"><a href="#Obs-293"><span class="linenos">293</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-294"><a href="#Obs-294"><span class="linenos">294</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
+</span><span id="Obs-295"><a href="#Obs-295"><span class="linenos">295</span></a>                        <span class="k">break</span>
+</span><span id="Obs-296"><a href="#Obs-296"><span class="linenos">296</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-297"><a href="#Obs-297"><span class="linenos">297</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs-298"><a href="#Obs-298"><span class="linenos">298</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
+</span><span id="Obs-299"><a href="#Obs-299"><span class="linenos">299</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-300"><a href="#Obs-300"><span class="linenos">300</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="p">(</span><span class="n">e_N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs-301"><a href="#Obs-301"><span class="linenos">301</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-302"><a href="#Obs-302"><span class="linenos">302</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-303"><a href="#Obs-303"><span class="linenos">303</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-304"><a href="#Obs-304"><span class="linenos">304</span></a>                    <span class="c1"># Standard automatic windowing procedure</span>
+</span><span id="Obs-305"><a href="#Obs-305"><span class="linenos">305</span></a>                    <span class="n">tau</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">((</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs-306"><a href="#Obs-306"><span class="linenos">306</span></a>                    <span class="n">g_w</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">/</span> <span class="n">tau</span><span class="p">)</span> <span class="o">-</span> <span class="n">tau</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">*</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-307"><a href="#Obs-307"><span class="linenos">307</span></a>                    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">):</span>
+</span><span id="Obs-308"><a href="#Obs-308"><span class="linenos">308</span></a>                        <span class="k">if</span> <span class="n">n</span> <span class="o">&lt;</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Obs-309"><a href="#Obs-309"><span class="linenos">309</span></a>                            <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-310"><a href="#Obs-310"><span class="linenos">310</span></a>                        <span class="k">if</span> <span class="n">g_w</span><span class="p">[</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-311"><a href="#Obs-311"><span class="linenos">311</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>  <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
+</span><span id="Obs-312"><a href="#Obs-312"><span class="linenos">312</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span>
+</span><span id="Obs-313"><a href="#Obs-313"><span class="linenos">313</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-314"><a href="#Obs-314"><span class="linenos">314</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-315"><a href="#Obs-315"><span class="linenos">315</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
+</span><span id="Obs-316"><a href="#Obs-316"><span class="linenos">316</span></a>                            <span class="k">break</span>
+</span><span id="Obs-317"><a href="#Obs-317"><span class="linenos">317</span></a>
+</span><span id="Obs-318"><a href="#Obs-318"><span class="linenos">318</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="Obs-319"><a href="#Obs-319"><span class="linenos">319</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="Obs-320"><a href="#Obs-320"><span class="linenos">320</span></a>
+</span><span id="Obs-321"><a href="#Obs-321"><span class="linenos">321</span></a>        <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="Obs-322"><a href="#Obs-322"><span class="linenos">322</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
+</span><span id="Obs-323"><a href="#Obs-323"><span class="linenos">323</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-324"><a href="#Obs-324"><span class="linenos">324</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">**</span><span class="mi">2</span>
+</span><span id="Obs-325"><a href="#Obs-325"><span class="linenos">325</span></a>
+</span><span id="Obs-326"><a href="#Obs-326"><span class="linenos">326</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
+</span><span id="Obs-327"><a href="#Obs-327"><span class="linenos">327</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs-328"><a href="#Obs-328"><span class="linenos">328</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs-329"><a href="#Obs-329"><span class="linenos">329</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-330"><a href="#Obs-330"><span class="linenos">330</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">)</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span><span id="Obs-331"><a href="#Obs-331"><span class="linenos">331</span></a>        <span class="k">return</span>
+</span><span id="Obs-332"><a href="#Obs-332"><span class="linenos">332</span></a>
+</span><span id="Obs-333"><a href="#Obs-333"><span class="linenos">333</span></a>    <span class="k">def</span> <span class="nf">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">):</span>
+</span><span id="Obs-334"><a href="#Obs-334"><span class="linenos">334</span></a>        <span class="sd">&quot;&quot;&quot;Calculate Gamma_{AA} from the deltas, which are defined on idx.</span>
+</span><span id="Obs-335"><a href="#Obs-335"><span class="linenos">335</span></a><span class="sd">           idx is assumed to be a contiguous range (possibly with a stepsize != 1)</span>
+</span><span id="Obs-336"><a href="#Obs-336"><span class="linenos">336</span></a>
+</span><span id="Obs-337"><a href="#Obs-337"><span class="linenos">337</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-338"><a href="#Obs-338"><span class="linenos">338</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-339"><a href="#Obs-339"><span class="linenos">339</span></a><span class="sd">        deltas : list</span>
+</span><span id="Obs-340"><a href="#Obs-340"><span class="linenos">340</span></a><span class="sd">            List of fluctuations</span>
+</span><span id="Obs-341"><a href="#Obs-341"><span class="linenos">341</span></a><span class="sd">        idx : list</span>
+</span><span id="Obs-342"><a href="#Obs-342"><span class="linenos">342</span></a><span class="sd">            List or range of configurations on which the deltas are defined.</span>
+</span><span id="Obs-343"><a href="#Obs-343"><span class="linenos">343</span></a><span class="sd">        shape : int</span>
+</span><span id="Obs-344"><a href="#Obs-344"><span class="linenos">344</span></a><span class="sd">            Number of configurations in idx.</span>
+</span><span id="Obs-345"><a href="#Obs-345"><span class="linenos">345</span></a><span class="sd">        w_max : int</span>
+</span><span id="Obs-346"><a href="#Obs-346"><span class="linenos">346</span></a><span class="sd">            Upper bound for the summation window.</span>
+</span><span id="Obs-347"><a href="#Obs-347"><span class="linenos">347</span></a><span class="sd">        fft : bool</span>
+</span><span id="Obs-348"><a href="#Obs-348"><span class="linenos">348</span></a><span class="sd">            determines whether the fft algorithm is used for the computation</span>
+</span><span id="Obs-349"><a href="#Obs-349"><span class="linenos">349</span></a><span class="sd">            of the autocorrelation function.</span>
+</span><span id="Obs-350"><a href="#Obs-350"><span class="linenos">350</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-351"><a href="#Obs-351"><span class="linenos">351</span></a>        <span class="n">gamma</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs-352"><a href="#Obs-352"><span class="linenos">352</span></a>        <span class="n">deltas</span> <span class="o">=</span> <span class="n">_expand_deltas</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">idx</span><span class="p">,</span> <span class="n">shape</span><span class="p">)</span>
+</span><span id="Obs-353"><a href="#Obs-353"><span class="linenos">353</span></a>        <span class="n">new_shape</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span>
+</span><span id="Obs-354"><a href="#Obs-354"><span class="linenos">354</span></a>        <span class="k">if</span> <span class="n">fft</span><span class="p">:</span>
+</span><span id="Obs-355"><a href="#Obs-355"><span class="linenos">355</span></a>            <span class="n">max_gamma</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">new_shape</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs-356"><a href="#Obs-356"><span class="linenos">356</span></a>            <span class="c1"># The padding for the fft has to be even</span>
+</span><span id="Obs-357"><a href="#Obs-357"><span class="linenos">357</span></a>            <span class="n">padding</span> <span class="o">=</span> <span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_shape</span> <span class="o">+</span> <span class="n">max_gamma</span><span class="p">)</span> <span class="o">%</span> <span class="mi">2</span>
+</span><span id="Obs-358"><a href="#Obs-358"><span class="linenos">358</span></a>            <span class="n">gamma</span><span class="p">[:</span><span class="n">max_gamma</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">irfft</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">fft</span><span class="o">.</span><span class="n">rfft</span><span class="p">(</span><span class="n">deltas</span><span class="p">,</span> <span class="n">padding</span><span class="p">))</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)[:</span><span class="n">max_gamma</span><span class="p">]</span>
+</span><span id="Obs-359"><a href="#Obs-359"><span class="linenos">359</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-360"><a href="#Obs-360"><span class="linenos">360</span></a>            <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">w_max</span><span class="p">):</span>
+</span><span id="Obs-361"><a href="#Obs-361"><span class="linenos">361</span></a>                <span class="k">if</span> <span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs-362"><a href="#Obs-362"><span class="linenos">362</span></a>                    <span class="n">gamma</span><span class="p">[</span><span class="n">n</span><span class="p">]</span> <span class="o">+=</span> <span class="n">deltas</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="n">new_shape</span> <span class="o">-</span> <span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">dot</span><span class="p">(</span><span class="n">deltas</span><span class="p">[</span><span class="n">n</span><span class="p">:</span><span class="n">new_shape</span><span class="p">])</span>
+</span><span id="Obs-363"><a href="#Obs-363"><span class="linenos">363</span></a>
+</span><span id="Obs-364"><a href="#Obs-364"><span class="linenos">364</span></a>        <span class="k">return</span> <span class="n">gamma</span>
+</span><span id="Obs-365"><a href="#Obs-365"><span class="linenos">365</span></a>
+</span><span id="Obs-366"><a href="#Obs-366"><span class="linenos">366</span></a>    <span class="k">def</span> <span class="nf">details</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ens_content</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="Obs-367"><a href="#Obs-367"><span class="linenos">367</span></a>        <span class="sd">&quot;&quot;&quot;Output detailed properties of the Obs.</span>
+</span><span id="Obs-368"><a href="#Obs-368"><span class="linenos">368</span></a>
+</span><span id="Obs-369"><a href="#Obs-369"><span class="linenos">369</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-370"><a href="#Obs-370"><span class="linenos">370</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-371"><a href="#Obs-371"><span class="linenos">371</span></a><span class="sd">        ens_content : bool</span>
+</span><span id="Obs-372"><a href="#Obs-372"><span class="linenos">372</span></a><span class="sd">            print details about the ensembles and replica if true.</span>
+</span><span id="Obs-373"><a href="#Obs-373"><span class="linenos">373</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-374"><a href="#Obs-374"><span class="linenos">374</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs-375"><a href="#Obs-375"><span class="linenos">375</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Description:&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="Obs-376"><a href="#Obs-376"><span class="linenos">376</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs-377"><a href="#Obs-377"><span class="linenos">377</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
+</span><span id="Obs-378"><a href="#Obs-378"><span class="linenos">378</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-379"><a href="#Obs-379"><span class="linenos">379</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs-380"><a href="#Obs-380"><span class="linenos">380</span></a>                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
+</span><span id="Obs-381"><a href="#Obs-381"><span class="linenos">381</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-382"><a href="#Obs-382"><span class="linenos">382</span></a>                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">*</span> <span class="mi">100</span>
+</span><span id="Obs-383"><a href="#Obs-383"><span class="linenos">383</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> (</span><span class="si">%3.3f%%</span><span class="s1">)&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">,</span> <span class="n">percentage</span><span class="p">))</span>
+</span><span id="Obs-384"><a href="#Obs-384"><span class="linenos">384</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-385"><a href="#Obs-385"><span class="linenos">385</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; Ensemble errors:&#39;</span><span class="p">)</span>
+</span><span id="Obs-386"><a href="#Obs-386"><span class="linenos">386</span></a>            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
+</span><span id="Obs-387"><a href="#Obs-387"><span class="linenos">387</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-388"><a href="#Obs-388"><span class="linenos">388</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-389"><a href="#Obs-389"><span class="linenos">389</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs-390"><a href="#Obs-390"><span class="linenos">390</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> tau_exp = </span><span class="si">%3.2f</span><span class="s1">,  N_sigma = </span><span class="si">%1.0i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-391"><a href="#Obs-391"><span class="linenos">391</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-392"><a href="#Obs-392"><span class="linenos">392</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> S = </span><span class="si">%3.2f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-393"><a href="#Obs-393"><span class="linenos">393</span></a>            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="Obs-394"><a href="#Obs-394"><span class="linenos">394</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-395"><a href="#Obs-395"><span class="linenos">395</span></a>        <span class="k">if</span> <span class="n">ens_content</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="Obs-396"><a href="#Obs-396"><span class="linenos">396</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-397"><a href="#Obs-397"><span class="linenos">397</span></a>                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensemble:&#39;</span><span class="p">)</span>
+</span><span id="Obs-398"><a href="#Obs-398"><span class="linenos">398</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-399"><a href="#Obs-399"><span class="linenos">399</span></a>                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensembles:&#39;</span><span class="p">)</span>
+</span><span id="Obs-400"><a href="#Obs-400"><span class="linenos">400</span></a>            <span class="n">my_string_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs-401"><a href="#Obs-401"><span class="linenos">401</span></a>            <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">items</span><span class="p">()):</span>
+</span><span id="Obs-402"><a href="#Obs-402"><span class="linenos">402</span></a>                <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
+</span><span id="Obs-403"><a href="#Obs-403"><span class="linenos">403</span></a>                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Ensemble &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="Obs-404"><a href="#Obs-404"><span class="linenos">404</span></a>                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-405"><a href="#Obs-405"><span class="linenos">405</span></a>                        <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
+</span><span id="Obs-406"><a href="#Obs-406"><span class="linenos">406</span></a>                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs-407"><a href="#Obs-407"><span class="linenos">407</span></a>                            <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
+</span><span id="Obs-408"><a href="#Obs-408"><span class="linenos">408</span></a>                        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-409"><a href="#Obs-409"><span class="linenos">409</span></a>                            <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
+</span><span id="Obs-410"><a href="#Obs-410"><span class="linenos">410</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-411"><a href="#Obs-411"><span class="linenos">411</span></a>                        <span class="n">sublist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs-412"><a href="#Obs-412"><span class="linenos">412</span></a>                        <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">value</span><span class="p">:</span>
+</span><span id="Obs-413"><a href="#Obs-413"><span class="linenos">413</span></a>                            <span class="n">my_substring</span> <span class="o">=</span> <span class="s1">&#39;    &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Replicum &#39;&quot;</span> <span class="o">+</span> <span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="Obs-414"><a href="#Obs-414"><span class="linenos">414</span></a>                            <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
+</span><span id="Obs-415"><a href="#Obs-415"><span class="linenos">415</span></a>                            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs-416"><a href="#Obs-416"><span class="linenos">416</span></a>                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
+</span><span id="Obs-417"><a href="#Obs-417"><span class="linenos">417</span></a>                            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-418"><a href="#Obs-418"><span class="linenos">418</span></a>                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
+</span><span id="Obs-419"><a href="#Obs-419"><span class="linenos">419</span></a>                            <span class="n">sublist</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_substring</span><span class="p">)</span>
+</span><span id="Obs-420"><a href="#Obs-420"><span class="linenos">420</span></a>
+</span><span id="Obs-421"><a href="#Obs-421"><span class="linenos">421</span></a>                        <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sublist</span><span class="p">)</span>
+</span><span id="Obs-422"><a href="#Obs-422"><span class="linenos">422</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-423"><a href="#Obs-423"><span class="linenos">423</span></a>                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Covobs   &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="Obs-424"><a href="#Obs-424"><span class="linenos">424</span></a>                <span class="n">my_string_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_string</span><span class="p">)</span>
+</span><span id="Obs-425"><a href="#Obs-425"><span class="linenos">425</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">my_string_list</span><span class="p">))</span>
+</span><span id="Obs-426"><a href="#Obs-426"><span class="linenos">426</span></a>
+</span><span id="Obs-427"><a href="#Obs-427"><span class="linenos">427</span></a>    <span class="k">def</span> <span class="nf">is_zero_within_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sigma</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="Obs-428"><a href="#Obs-428"><span class="linenos">428</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within &#39;sigma&#39; standard errors.</span>
+</span><span id="Obs-429"><a href="#Obs-429"><span class="linenos">429</span></a>
+</span><span id="Obs-430"><a href="#Obs-430"><span class="linenos">430</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-431"><a href="#Obs-431"><span class="linenos">431</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-432"><a href="#Obs-432"><span class="linenos">432</span></a><span class="sd">        sigma : int</span>
+</span><span id="Obs-433"><a href="#Obs-433"><span class="linenos">433</span></a><span class="sd">            Number of standard errors used for the check.</span>
+</span><span id="Obs-434"><a href="#Obs-434"><span class="linenos">434</span></a>
+</span><span id="Obs-435"><a href="#Obs-435"><span class="linenos">435</span></a><span class="sd">        Works only properly when the gamma method was run.</span>
+</span><span id="Obs-436"><a href="#Obs-436"><span class="linenos">436</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-437"><a href="#Obs-437"><span class="linenos">437</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span> <span class="ow">or</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="n">sigma</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span><span id="Obs-438"><a href="#Obs-438"><span class="linenos">438</span></a>
+</span><span id="Obs-439"><a href="#Obs-439"><span class="linenos">439</span></a>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-10</span><span class="p">):</span>
+</span><span id="Obs-440"><a href="#Obs-440"><span class="linenos">440</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within a given tolerance.</span>
+</span><span id="Obs-441"><a href="#Obs-441"><span class="linenos">441</span></a>
+</span><span id="Obs-442"><a href="#Obs-442"><span class="linenos">442</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-443"><a href="#Obs-443"><span class="linenos">443</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-444"><a href="#Obs-444"><span class="linenos">444</span></a><span class="sd">        atol : float</span>
+</span><span id="Obs-445"><a href="#Obs-445"><span class="linenos">445</span></a><span class="sd">            Absolute tolerance (for details see numpy documentation).</span>
+</span><span id="Obs-446"><a href="#Obs-446"><span class="linenos">446</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-447"><a href="#Obs-447"><span class="linenos">447</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="o">.</span><span class="n">errsq</span><span class="p">(),</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
+</span><span id="Obs-448"><a href="#Obs-448"><span class="linenos">448</span></a>
+</span><span id="Obs-449"><a href="#Obs-449"><span class="linenos">449</span></a>    <span class="k">def</span> <span class="nf">plot_tauint</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Obs-450"><a href="#Obs-450"><span class="linenos">450</span></a>        <span class="sd">&quot;&quot;&quot;Plot integrated autocorrelation time for each ensemble.</span>
+</span><span id="Obs-451"><a href="#Obs-451"><span class="linenos">451</span></a>
+</span><span id="Obs-452"><a href="#Obs-452"><span class="linenos">452</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-453"><a href="#Obs-453"><span class="linenos">453</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-454"><a href="#Obs-454"><span class="linenos">454</span></a><span class="sd">        save : str</span>
+</span><span id="Obs-455"><a href="#Obs-455"><span class="linenos">455</span></a><span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
+</span><span id="Obs-456"><a href="#Obs-456"><span class="linenos">456</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-457"><a href="#Obs-457"><span class="linenos">457</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs-458"><a href="#Obs-458"><span class="linenos">458</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs-459"><a href="#Obs-459"><span class="linenos">459</span></a>
+</span><span id="Obs-460"><a href="#Obs-460"><span class="linenos">460</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs-461"><a href="#Obs-461"><span class="linenos">461</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Obs-462"><a href="#Obs-462"><span class="linenos">462</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
+</span><span id="Obs-463"><a href="#Obs-463"><span class="linenos">463</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
+</span><span id="Obs-464"><a href="#Obs-464"><span class="linenos">464</span></a>            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-465"><a href="#Obs-465"><span class="linenos">465</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs-466"><a href="#Obs-466"><span class="linenos">466</span></a>                <span class="n">base</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]]</span>
+</span><span id="Obs-467"><a href="#Obs-467"><span class="linenos">467</span></a>                <span class="n">x_help</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
+</span><span id="Obs-468"><a href="#Obs-468"><span class="linenos">468</span></a>                <span class="n">y_help</span> <span class="o">=</span> <span class="p">(</span><span class="n">x_help</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">x_help</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)))</span> <span class="o">+</span> <span class="n">base</span>
+</span><span id="Obs-469"><a href="#Obs-469"><span class="linenos">469</span></a>                <span class="n">x_arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
+</span><span id="Obs-470"><a href="#Obs-470"><span class="linenos">470</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_arr</span><span class="p">,</span> <span class="n">y_help</span><span class="p">,</span> <span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Obs-471"><a href="#Obs-471"><span class="linenos">471</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
+</span><span id="Obs-472"><a href="#Obs-472"><span class="linenos">472</span></a>                             <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
+</span><span id="Obs-473"><a href="#Obs-473"><span class="linenos">473</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
+</span><span id="Obs-474"><a href="#Obs-474"><span class="linenos">474</span></a>                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, $\tau_\mathrm</span><span class="si">{exp}</span><span class="s1">$=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
+</span><span id="Obs-475"><a href="#Obs-475"><span class="linenos">475</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-476"><a href="#Obs-476"><span class="linenos">476</span></a>                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
+</span><span id="Obs-477"><a href="#Obs-477"><span class="linenos">477</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="Obs-478"><a href="#Obs-478"><span class="linenos">478</span></a>
+</span><span id="Obs-479"><a href="#Obs-479"><span class="linenos">479</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">)[:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">)</span>
+</span><span id="Obs-480"><a href="#Obs-480"><span class="linenos">480</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">)</span>
+</span><span id="Obs-481"><a href="#Obs-481"><span class="linenos">481</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="Obs-482"><a href="#Obs-482"><span class="linenos">482</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
+</span><span id="Obs-483"><a href="#Obs-483"><span class="linenos">483</span></a>            <span class="n">ylim</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">()</span>
+</span><span id="Obs-484"><a href="#Obs-484"><span class="linenos">484</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="nb">max</span><span class="p">(</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">ylim</span><span class="p">[</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="Obs-485"><a href="#Obs-485"><span class="linenos">485</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs-486"><a href="#Obs-486"><span class="linenos">486</span></a>            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="Obs-487"><a href="#Obs-487"><span class="linenos">487</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+</span><span id="Obs-488"><a href="#Obs-488"><span class="linenos">488</span></a>
+</span><span id="Obs-489"><a href="#Obs-489"><span class="linenos">489</span></a>    <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Obs-490"><a href="#Obs-490"><span class="linenos">490</span></a>        <span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
+</span><span id="Obs-491"><a href="#Obs-491"><span class="linenos">491</span></a>
+</span><span id="Obs-492"><a href="#Obs-492"><span class="linenos">492</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-493"><a href="#Obs-493"><span class="linenos">493</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-494"><a href="#Obs-494"><span class="linenos">494</span></a><span class="sd">        save : str</span>
+</span><span id="Obs-495"><a href="#Obs-495"><span class="linenos">495</span></a><span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
+</span><span id="Obs-496"><a href="#Obs-496"><span class="linenos">496</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-497"><a href="#Obs-497"><span class="linenos">497</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs-498"><a href="#Obs-498"><span class="linenos">498</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs-499"><a href="#Obs-499"><span class="linenos">499</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs-500"><a href="#Obs-500"><span class="linenos">500</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Obs-501"><a href="#Obs-501"><span class="linenos">501</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
+</span><span id="Obs-502"><a href="#Obs-502"><span class="linenos">502</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
+</span><span id="Obs-503"><a href="#Obs-503"><span class="linenos">503</span></a>            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-504"><a href="#Obs-504"><span class="linenos">504</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">length</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="Obs-505"><a href="#Obs-505"><span class="linenos">505</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Obs-506"><a href="#Obs-506"><span class="linenos">506</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs-507"><a href="#Obs-507"><span class="linenos">507</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
+</span><span id="Obs-508"><a href="#Obs-508"><span class="linenos">508</span></a>                         <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k-&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-509"><a href="#Obs-509"><span class="linenos">509</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
+</span><span id="Obs-510"><a href="#Obs-510"><span class="linenos">510</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, tau\_exp=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
+</span><span id="Obs-511"><a href="#Obs-511"><span class="linenos">511</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-512"><a href="#Obs-512"><span class="linenos">512</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="Obs-513"><a href="#Obs-513"><span class="linenos">513</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
+</span><span id="Obs-514"><a href="#Obs-514"><span class="linenos">514</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-515"><a href="#Obs-515"><span class="linenos">515</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
+</span><span id="Obs-516"><a href="#Obs-516"><span class="linenos">516</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs-517"><a href="#Obs-517"><span class="linenos">517</span></a>            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="Obs-518"><a href="#Obs-518"><span class="linenos">518</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+</span><span id="Obs-519"><a href="#Obs-519"><span class="linenos">519</span></a>
+</span><span id="Obs-520"><a href="#Obs-520"><span class="linenos">520</span></a>    <span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-521"><a href="#Obs-521"><span class="linenos">521</span></a>        <span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
+</span><span id="Obs-522"><a href="#Obs-522"><span class="linenos">522</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs-523"><a href="#Obs-523"><span class="linenos">523</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs-524"><a href="#Obs-524"><span class="linenos">524</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs-525"><a href="#Obs-525"><span class="linenos">525</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-526"><a href="#Obs-526"><span class="linenos">526</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No replica distribution for a single replicum (&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;)&#39;</span><span class="p">)</span>
+</span><span id="Obs-527"><a href="#Obs-527"><span class="linenos">527</span></a>                <span class="k">continue</span>
+</span><span id="Obs-528"><a href="#Obs-528"><span class="linenos">528</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs-529"><a href="#Obs-529"><span class="linenos">529</span></a>            <span class="n">sub_r_mean</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs-530"><a href="#Obs-530"><span class="linenos">530</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="Obs-531"><a href="#Obs-531"><span class="linenos">531</span></a>                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="Obs-532"><a href="#Obs-532"><span class="linenos">532</span></a>                <span class="n">sub_r_mean</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span>
+</span><span id="Obs-533"><a href="#Obs-533"><span class="linenos">533</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
+</span><span id="Obs-534"><a href="#Obs-534"><span class="linenos">534</span></a>            <span class="n">sub_r_mean</span> <span class="o">/=</span> <span class="n">e_N</span>
+</span><span id="Obs-535"><a href="#Obs-535"><span class="linenos">535</span></a>            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-536"><a href="#Obs-536"><span class="linenos">536</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="Obs-537"><a href="#Obs-537"><span class="linenos">537</span></a>                <span class="n">arr</span><span class="p">[</span><span class="n">r</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="n">sub_r_mean</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_N</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs-538"><a href="#Obs-538"><span class="linenos">538</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">hist</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="n">rwidth</span><span class="o">=</span><span class="mf">0.8</span><span class="p">,</span> <span class="n">bins</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs-539"><a href="#Obs-539"><span class="linenos">539</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Replica distribution&#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39; (mean=0, var=1)&#39;</span><span class="p">)</span>
+</span><span id="Obs-540"><a href="#Obs-540"><span class="linenos">540</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs-541"><a href="#Obs-541"><span class="linenos">541</span></a>
+</span><span id="Obs-542"><a href="#Obs-542"><span class="linenos">542</span></a>    <span class="k">def</span> <span class="nf">plot_history</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expand</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="Obs-543"><a href="#Obs-543"><span class="linenos">543</span></a>        <span class="sd">&quot;&quot;&quot;Plot derived Monte Carlo history for each ensemble</span>
+</span><span id="Obs-544"><a href="#Obs-544"><span class="linenos">544</span></a>
+</span><span id="Obs-545"><a href="#Obs-545"><span class="linenos">545</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-546"><a href="#Obs-546"><span class="linenos">546</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-547"><a href="#Obs-547"><span class="linenos">547</span></a><span class="sd">        expand : bool</span>
+</span><span id="Obs-548"><a href="#Obs-548"><span class="linenos">548</span></a><span class="sd">            show expanded history for irregular Monte Carlo chains (default: True).</span>
+</span><span id="Obs-549"><a href="#Obs-549"><span class="linenos">549</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-550"><a href="#Obs-550"><span class="linenos">550</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs-551"><a href="#Obs-551"><span class="linenos">551</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Obs-552"><a href="#Obs-552"><span class="linenos">552</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs-553"><a href="#Obs-553"><span class="linenos">553</span></a>            <span class="n">tmp</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs-554"><a href="#Obs-554"><span class="linenos">554</span></a>            <span class="n">tmp_expanded</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs-555"><a href="#Obs-555"><span class="linenos">555</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="Obs-556"><a href="#Obs-556"><span class="linenos">556</span></a>                <span class="n">tmp</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="Obs-557"><a href="#Obs-557"><span class="linenos">557</span></a>                <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
+</span><span id="Obs-558"><a href="#Obs-558"><span class="linenos">558</span></a>                    <span class="n">tmp_expanded</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_expand_deltas</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="Obs-559"><a href="#Obs-559"><span class="linenos">559</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="Obs-560"><a href="#Obs-560"><span class="linenos">560</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-561"><a href="#Obs-561"><span class="linenos">561</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="Obs-562"><a href="#Obs-562"><span class="linenos">562</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
+</span><span id="Obs-563"><a href="#Obs-563"><span class="linenos">563</span></a>            <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs-564"><a href="#Obs-564"><span class="linenos">564</span></a>            <span class="n">y_test</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="Obs-565"><a href="#Obs-565"><span class="linenos">565</span></a>            <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
+</span><span id="Obs-566"><a href="#Obs-566"><span class="linenos">566</span></a>                <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="Obs-567"><a href="#Obs-567"><span class="linenos">567</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-568"><a href="#Obs-568"><span class="linenos">568</span></a>                <span class="n">y</span> <span class="o">=</span> <span class="n">y_test</span>
+</span><span id="Obs-569"><a href="#Obs-569"><span class="linenos">569</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+</span><span id="Obs-570"><a href="#Obs-570"><span class="linenos">570</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">e_N</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="Obs-571"><a href="#Obs-571"><span class="linenos">571</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">skew: </span><span class="si">{</span><span class="n">skew</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">skewtest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">), kurtosis: </span><span class="si">{</span><span class="n">kurtosis</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">kurtosistest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">)&#39;</span><span class="p">)</span>
+</span><span id="Obs-572"><a href="#Obs-572"><span class="linenos">572</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs-573"><a href="#Obs-573"><span class="linenos">573</span></a>
+</span><span id="Obs-574"><a href="#Obs-574"><span class="linenos">574</span></a>    <span class="k">def</span> <span class="nf">plot_piechart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-575"><a href="#Obs-575"><span class="linenos">575</span></a>        <span class="sd">&quot;&quot;&quot;Plot piechart which shows the fractional contribution of each</span>
+</span><span id="Obs-576"><a href="#Obs-576"><span class="linenos">576</span></a><span class="sd">        ensemble to the error and returns a dictionary containing the fractions.&quot;&quot;&quot;</span>
+</span><span id="Obs-577"><a href="#Obs-577"><span class="linenos">577</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs-578"><a href="#Obs-578"><span class="linenos">578</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs-579"><a href="#Obs-579"><span class="linenos">579</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
+</span><span id="Obs-580"><a href="#Obs-580"><span class="linenos">580</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error is 0.0&#39;</span><span class="p">)</span>
+</span><span id="Obs-581"><a href="#Obs-581"><span class="linenos">581</span></a>        <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
+</span><span id="Obs-582"><a href="#Obs-582"><span class="linenos">582</span></a>        <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="Obs-583"><a href="#Obs-583"><span class="linenos">583</span></a>        <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+</span><span id="Obs-584"><a href="#Obs-584"><span class="linenos">584</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">pie</span><span class="p">(</span><span class="n">sizes</span><span class="p">,</span> <span class="n">labels</span><span class="o">=</span><span class="n">labels</span><span class="p">,</span> <span class="n">startangle</span><span class="o">=</span><span class="mi">90</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="Obs-585"><a href="#Obs-585"><span class="linenos">585</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">axis</span><span class="p">(</span><span class="s1">&#39;equal&#39;</span><span class="p">)</span>
+</span><span id="Obs-586"><a href="#Obs-586"><span class="linenos">586</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs-587"><a href="#Obs-587"><span class="linenos">587</span></a>
+</span><span id="Obs-588"><a href="#Obs-588"><span class="linenos">588</span></a>        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">,</span> <span class="n">sizes</span><span class="p">))</span>
+</span><span id="Obs-589"><a href="#Obs-589"><span class="linenos">589</span></a>
+</span><span id="Obs-590"><a href="#Obs-590"><span class="linenos">590</span></a>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Obs-591"><a href="#Obs-591"><span class="linenos">591</span></a>        <span class="sd">&quot;&quot;&quot;Dump the Obs to a file &#39;name&#39; of chosen format.</span>
+</span><span id="Obs-592"><a href="#Obs-592"><span class="linenos">592</span></a>
+</span><span id="Obs-593"><a href="#Obs-593"><span class="linenos">593</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs-594"><a href="#Obs-594"><span class="linenos">594</span></a><span class="sd">        ----------</span>
+</span><span id="Obs-595"><a href="#Obs-595"><span class="linenos">595</span></a><span class="sd">        filename : str</span>
+</span><span id="Obs-596"><a href="#Obs-596"><span class="linenos">596</span></a><span class="sd">            name of the file to be saved.</span>
+</span><span id="Obs-597"><a href="#Obs-597"><span class="linenos">597</span></a><span class="sd">        datatype : str</span>
+</span><span id="Obs-598"><a href="#Obs-598"><span class="linenos">598</span></a><span class="sd">            Format of the exported file. Supported formats include</span>
+</span><span id="Obs-599"><a href="#Obs-599"><span class="linenos">599</span></a><span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
+</span><span id="Obs-600"><a href="#Obs-600"><span class="linenos">600</span></a><span class="sd">        description : str</span>
+</span><span id="Obs-601"><a href="#Obs-601"><span class="linenos">601</span></a><span class="sd">            Description for output file, only relevant for json.gz format.</span>
+</span><span id="Obs-602"><a href="#Obs-602"><span class="linenos">602</span></a><span class="sd">        path : str</span>
+</span><span id="Obs-603"><a href="#Obs-603"><span class="linenos">603</span></a><span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="Obs-604"><a href="#Obs-604"><span class="linenos">604</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-605"><a href="#Obs-605"><span class="linenos">605</span></a>        <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="Obs-606"><a href="#Obs-606"><span class="linenos">606</span></a>            <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
+</span><span id="Obs-607"><a href="#Obs-607"><span class="linenos">607</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-608"><a href="#Obs-608"><span class="linenos">608</span></a>            <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
+</span><span id="Obs-609"><a href="#Obs-609"><span class="linenos">609</span></a>
+</span><span id="Obs-610"><a href="#Obs-610"><span class="linenos">610</span></a>        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
+</span><span id="Obs-611"><a href="#Obs-611"><span class="linenos">611</span></a>            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
+</span><span id="Obs-612"><a href="#Obs-612"><span class="linenos">612</span></a>            <span class="n">dump_to_json</span><span class="p">([</span><span class="bp">self</span><span class="p">],</span> <span class="n">file_name</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">)</span>
+</span><span id="Obs-613"><a href="#Obs-613"><span class="linenos">613</span></a>        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
+</span><span id="Obs-614"><a href="#Obs-614"><span class="linenos">614</span></a>            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
+</span><span id="Obs-615"><a href="#Obs-615"><span class="linenos">615</span></a>                <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
+</span><span id="Obs-616"><a href="#Obs-616"><span class="linenos">616</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-617"><a href="#Obs-617"><span class="linenos">617</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
+</span><span id="Obs-618"><a href="#Obs-618"><span class="linenos">618</span></a>
+</span><span id="Obs-619"><a href="#Obs-619"><span class="linenos">619</span></a>    <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-620"><a href="#Obs-620"><span class="linenos">620</span></a>        <span class="sd">&quot;&quot;&quot;Export jackknife samples from the Obs</span>
+</span><span id="Obs-621"><a href="#Obs-621"><span class="linenos">621</span></a>
+</span><span id="Obs-622"><a href="#Obs-622"><span class="linenos">622</span></a><span class="sd">        Returns</span>
+</span><span id="Obs-623"><a href="#Obs-623"><span class="linenos">623</span></a><span class="sd">        -------</span>
+</span><span id="Obs-624"><a href="#Obs-624"><span class="linenos">624</span></a><span class="sd">        numpy.ndarray</span>
+</span><span id="Obs-625"><a href="#Obs-625"><span class="linenos">625</span></a><span class="sd">            Returns a numpy array of length N + 1 where N is the number of samples</span>
+</span><span id="Obs-626"><a href="#Obs-626"><span class="linenos">626</span></a><span class="sd">            for the given ensemble and replicum. The zeroth entry of the array contains</span>
+</span><span id="Obs-627"><a href="#Obs-627"><span class="linenos">627</span></a><span class="sd">            the mean value of the Obs, entries 1 to N contain the N jackknife samples</span>
+</span><span id="Obs-628"><a href="#Obs-628"><span class="linenos">628</span></a><span class="sd">            derived from the Obs. The current implementation only works for observables</span>
+</span><span id="Obs-629"><a href="#Obs-629"><span class="linenos">629</span></a><span class="sd">            defined on exactly one ensemble and replicum. The derived jackknife samples</span>
+</span><span id="Obs-630"><a href="#Obs-630"><span class="linenos">630</span></a><span class="sd">            should agree with samples from a full jackknife analysis up to O(1/N).</span>
+</span><span id="Obs-631"><a href="#Obs-631"><span class="linenos">631</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs-632"><a href="#Obs-632"><span class="linenos">632</span></a>
+</span><span id="Obs-633"><a href="#Obs-633"><span class="linenos">633</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs-634"><a href="#Obs-634"><span class="linenos">634</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;export_jackknife&#39; is only implemented for Obs defined on one ensemble and replicum.&quot;</span><span class="p">)</span>
+</span><span id="Obs-635"><a href="#Obs-635"><span class="linenos">635</span></a>
+</span><span id="Obs-636"><a href="#Obs-636"><span class="linenos">636</span></a>        <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Obs-637"><a href="#Obs-637"><span class="linenos">637</span></a>        <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs-638"><a href="#Obs-638"><span class="linenos">638</span></a>        <span class="n">n</span> <span class="o">=</span> <span class="n">full_data</span><span class="o">.</span><span class="n">size</span>
+</span><span id="Obs-639"><a href="#Obs-639"><span class="linenos">639</span></a>        <span class="n">mean</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Obs-640"><a href="#Obs-640"><span class="linenos">640</span></a>        <span class="n">tmp_jacks</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-641"><a href="#Obs-641"><span class="linenos">641</span></a>        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="Obs-642"><a href="#Obs-642"><span class="linenos">642</span></a>        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">mean</span> <span class="o">-</span> <span class="n">full_data</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs-643"><a href="#Obs-643"><span class="linenos">643</span></a>        <span class="k">return</span> <span class="n">tmp_jacks</span>
+</span><span id="Obs-644"><a href="#Obs-644"><span class="linenos">644</span></a>
+</span><span id="Obs-645"><a href="#Obs-645"><span class="linenos">645</span></a>    <span class="k">def</span> <span class="fm">__float__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-646"><a href="#Obs-646"><span class="linenos">646</span></a>        <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="Obs-647"><a href="#Obs-647"><span class="linenos">647</span></a>
+</span><span id="Obs-648"><a href="#Obs-648"><span class="linenos">648</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-649"><a href="#Obs-649"><span class="linenos">649</span></a>        <span class="k">return</span> <span class="s1">&#39;Obs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
+</span><span id="Obs-650"><a href="#Obs-650"><span class="linenos">650</span></a>
+</span><span id="Obs-651"><a href="#Obs-651"><span class="linenos">651</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-652"><a href="#Obs-652"><span class="linenos">652</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs-653"><a href="#Obs-653"><span class="linenos">653</span></a>            <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="Obs-654"><a href="#Obs-654"><span class="linenos">654</span></a>        <span class="n">fexp</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">floor</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">log10</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">))</span>
+</span><span id="Obs-655"><a href="#Obs-655"><span class="linenos">655</span></a>        <span class="k">if</span> <span class="n">fexp</span> <span class="o">&lt;</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs-656"><a href="#Obs-656"><span class="linenos">656</span></a>            <span class="k">return</span> <span class="s1">&#39;{:</span><span class="si">{form}</span><span class="s1">}(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">*</span> <span class="mi">10</span> <span class="o">**</span> <span class="p">(</span><span class="o">-</span><span class="n">fexp</span> <span class="o">+</span> <span class="mi">1</span><span class="p">),</span> <span class="n">form</span><span class="o">=</span><span class="s1">&#39;.&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">fexp</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;f&#39;</span><span class="p">)</span>
+</span><span id="Obs-657"><a href="#Obs-657"><span class="linenos">657</span></a>        <span class="k">elif</span> <span class="n">fexp</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs-658"><a href="#Obs-658"><span class="linenos">658</span></a>            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.1f}</span><span class="s1">(</span><span class="si">{:1.1f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
+</span><span id="Obs-659"><a href="#Obs-659"><span class="linenos">659</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-660"><a href="#Obs-660"><span class="linenos">660</span></a>            <span class="k">return</span> <span class="s1">&#39;</span><span class="si">{:.0f}</span><span class="s1">(</span><span class="si">{:2.0f}</span><span class="s1">)&#39;</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
+</span><span id="Obs-661"><a href="#Obs-661"><span class="linenos">661</span></a>
+</span><span id="Obs-662"><a href="#Obs-662"><span class="linenos">662</span></a>    <span class="c1"># Overload comparisons</span>
+</span><span id="Obs-663"><a href="#Obs-663"><span class="linenos">663</span></a>    <span class="k">def</span> <span class="fm">__lt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="Obs-664"><a href="#Obs-664"><span class="linenos">664</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;</span> <span class="n">other</span>
+</span><span id="Obs-665"><a href="#Obs-665"><span class="linenos">665</span></a>
+</span><span id="Obs-666"><a href="#Obs-666"><span class="linenos">666</span></a>    <span class="k">def</span> <span class="fm">__le__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="Obs-667"><a href="#Obs-667"><span class="linenos">667</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&lt;=</span> <span class="n">other</span>
+</span><span id="Obs-668"><a href="#Obs-668"><span class="linenos">668</span></a>
+</span><span id="Obs-669"><a href="#Obs-669"><span class="linenos">669</span></a>    <span class="k">def</span> <span class="fm">__gt__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="Obs-670"><a href="#Obs-670"><span class="linenos">670</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;</span> <span class="n">other</span>
+</span><span id="Obs-671"><a href="#Obs-671"><span class="linenos">671</span></a>
+</span><span id="Obs-672"><a href="#Obs-672"><span class="linenos">672</span></a>    <span class="k">def</span> <span class="fm">__ge__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="Obs-673"><a href="#Obs-673"><span class="linenos">673</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">&gt;=</span> <span class="n">other</span>
+</span><span id="Obs-674"><a href="#Obs-674"><span class="linenos">674</span></a>
+</span><span id="Obs-675"><a href="#Obs-675"><span class="linenos">675</span></a>    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="Obs-676"><a href="#Obs-676"><span class="linenos">676</span></a>        <span class="k">return</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
+</span><span id="Obs-677"><a href="#Obs-677"><span class="linenos">677</span></a>
+</span><span id="Obs-678"><a href="#Obs-678"><span class="linenos">678</span></a>    <span class="k">def</span> <span class="fm">__ne__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="Obs-679"><a href="#Obs-679"><span class="linenos">679</span></a>        <span class="k">return</span> <span class="ow">not</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span>
+</span><span id="Obs-680"><a href="#Obs-680"><span class="linenos">680</span></a>
+</span><span id="Obs-681"><a href="#Obs-681"><span class="linenos">681</span></a>    <span class="c1"># Overload math operations</span>
+</span><span id="Obs-682"><a href="#Obs-682"><span class="linenos">682</span></a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-683"><a href="#Obs-683"><span class="linenos">683</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Obs-684"><a href="#Obs-684"><span class="linenos">684</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">])</span>
+</span><span id="Obs-685"><a href="#Obs-685"><span class="linenos">685</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-686"><a href="#Obs-686"><span class="linenos">686</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Obs-687"><a href="#Obs-687"><span class="linenos">687</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">+</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-688"><a href="#Obs-688"><span class="linenos">688</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="Obs-689"><a href="#Obs-689"><span class="linenos">689</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="Obs-690"><a href="#Obs-690"><span class="linenos">690</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-691"><a href="#Obs-691"><span class="linenos">691</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Obs-692"><a href="#Obs-692"><span class="linenos">692</span></a>
+</span><span id="Obs-693"><a href="#Obs-693"><span class="linenos">693</span></a>    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-694"><a href="#Obs-694"><span class="linenos">694</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="Obs-695"><a href="#Obs-695"><span class="linenos">695</span></a>
+</span><span id="Obs-696"><a href="#Obs-696"><span class="linenos">696</span></a>    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-697"><a href="#Obs-697"><span class="linenos">697</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Obs-698"><a href="#Obs-698"><span class="linenos">698</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
+</span><span id="Obs-699"><a href="#Obs-699"><span class="linenos">699</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-700"><a href="#Obs-700"><span class="linenos">700</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Obs-701"><a href="#Obs-701"><span class="linenos">701</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">*</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-702"><a href="#Obs-702"><span class="linenos">702</span></a>            <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="nb">complex</span><span class="p">):</span>
+</span><span id="Obs-703"><a href="#Obs-703"><span class="linenos">703</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="Obs-704"><a href="#Obs-704"><span class="linenos">704</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="Obs-705"><a href="#Obs-705"><span class="linenos">705</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="Obs-706"><a href="#Obs-706"><span class="linenos">706</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-707"><a href="#Obs-707"><span class="linenos">707</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-708"><a href="#Obs-708"><span class="linenos">708</span></a>
+</span><span id="Obs-709"><a href="#Obs-709"><span class="linenos">709</span></a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-710"><a href="#Obs-710"><span class="linenos">710</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">y</span>
+</span><span id="Obs-711"><a href="#Obs-711"><span class="linenos">711</span></a>
+</span><span id="Obs-712"><a href="#Obs-712"><span class="linenos">712</span></a>    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-713"><a href="#Obs-713"><span class="linenos">713</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Obs-714"><a href="#Obs-714"><span class="linenos">714</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="o">-</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Obs-715"><a href="#Obs-715"><span class="linenos">715</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-716"><a href="#Obs-716"><span class="linenos">716</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Obs-717"><a href="#Obs-717"><span class="linenos">717</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">-</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-718"><a href="#Obs-718"><span class="linenos">718</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="Obs-719"><a href="#Obs-719"><span class="linenos">719</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="Obs-720"><a href="#Obs-720"><span class="linenos">720</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-721"><a href="#Obs-721"><span class="linenos">721</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
+</span><span id="Obs-722"><a href="#Obs-722"><span class="linenos">722</span></a>
+</span><span id="Obs-723"><a href="#Obs-723"><span class="linenos">723</span></a>    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-724"><a href="#Obs-724"><span class="linenos">724</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">y</span><span class="p">)</span>
+</span><span id="Obs-725"><a href="#Obs-725"><span class="linenos">725</span></a>
+</span><span id="Obs-726"><a href="#Obs-726"><span class="linenos">726</span></a>    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-727"><a href="#Obs-727"><span class="linenos">727</span></a>        <span class="k">return</span> <span class="bp">self</span>
+</span><span id="Obs-728"><a href="#Obs-728"><span class="linenos">728</span></a>
+</span><span id="Obs-729"><a href="#Obs-729"><span class="linenos">729</span></a>    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-730"><a href="#Obs-730"><span class="linenos">730</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="Obs-731"><a href="#Obs-731"><span class="linenos">731</span></a>
+</span><span id="Obs-732"><a href="#Obs-732"><span class="linenos">732</span></a>    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-733"><a href="#Obs-733"><span class="linenos">733</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Obs-734"><a href="#Obs-734"><span class="linenos">734</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Obs-735"><a href="#Obs-735"><span class="linenos">735</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-736"><a href="#Obs-736"><span class="linenos">736</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Obs-737"><a href="#Obs-737"><span class="linenos">737</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="bp">self</span> <span class="o">/</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-738"><a href="#Obs-738"><span class="linenos">738</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="Obs-739"><a href="#Obs-739"><span class="linenos">739</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="Obs-740"><a href="#Obs-740"><span class="linenos">740</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-741"><a href="#Obs-741"><span class="linenos">741</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-742"><a href="#Obs-742"><span class="linenos">742</span></a>
+</span><span id="Obs-743"><a href="#Obs-743"><span class="linenos">743</span></a>    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-744"><a href="#Obs-744"><span class="linenos">744</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Obs-745"><a href="#Obs-745"><span class="linenos">745</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span> <span class="n">y</span><span class="o">.</span><span class="n">value</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Obs-746"><a href="#Obs-746"><span class="linenos">746</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-747"><a href="#Obs-747"><span class="linenos">747</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="Obs-748"><a href="#Obs-748"><span class="linenos">748</span></a>                <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span> <span class="o">/</span> <span class="bp">self</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-749"><a href="#Obs-749"><span class="linenos">749</span></a>            <span class="k">elif</span> <span class="n">y</span><span class="o">.</span><span class="vm">__class__</span><span class="o">.</span><span class="vm">__name__</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;Corr&#39;</span><span class="p">,</span> <span class="s1">&#39;CObs&#39;</span><span class="p">]:</span>
+</span><span id="Obs-750"><a href="#Obs-750"><span class="linenos">750</span></a>                <span class="k">return</span> <span class="bp">NotImplemented</span>
+</span><span id="Obs-751"><a href="#Obs-751"><span class="linenos">751</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-752"><a href="#Obs-752"><span class="linenos">752</span></a>                <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">y</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">y</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Obs-753"><a href="#Obs-753"><span class="linenos">753</span></a>
+</span><span id="Obs-754"><a href="#Obs-754"><span class="linenos">754</span></a>    <span class="k">def</span> <span class="fm">__pow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-755"><a href="#Obs-755"><span class="linenos">755</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Obs-756"><a href="#Obs-756"><span class="linenos">756</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">])</span>
+</span><span id="Obs-757"><a href="#Obs-757"><span class="linenos">757</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-758"><a href="#Obs-758"><span class="linenos">758</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">y</span><span class="p">,</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-759"><a href="#Obs-759"><span class="linenos">759</span></a>
+</span><span id="Obs-760"><a href="#Obs-760"><span class="linenos">760</span></a>    <span class="k">def</span> <span class="fm">__rpow__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="Obs-761"><a href="#Obs-761"><span class="linenos">761</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="Obs-762"><a href="#Obs-762"><span class="linenos">762</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">y</span><span class="p">,</span> <span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-763"><a href="#Obs-763"><span class="linenos">763</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs-764"><a href="#Obs-764"><span class="linenos">764</span></a>            <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">y</span> <span class="o">**</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-765"><a href="#Obs-765"><span class="linenos">765</span></a>
+</span><span id="Obs-766"><a href="#Obs-766"><span class="linenos">766</span></a>    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-767"><a href="#Obs-767"><span class="linenos">767</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-768"><a href="#Obs-768"><span class="linenos">768</span></a>
+</span><span id="Obs-769"><a href="#Obs-769"><span class="linenos">769</span></a>    <span class="c1"># Overload numpy functions</span>
+</span><span id="Obs-770"><a href="#Obs-770"><span class="linenos">770</span></a>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-771"><a href="#Obs-771"><span class="linenos">771</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Obs-772"><a href="#Obs-772"><span class="linenos">772</span></a>
+</span><span id="Obs-773"><a href="#Obs-773"><span class="linenos">773</span></a>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-774"><a href="#Obs-774"><span class="linenos">774</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
+</span><span id="Obs-775"><a href="#Obs-775"><span class="linenos">775</span></a>
+</span><span id="Obs-776"><a href="#Obs-776"><span class="linenos">776</span></a>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-777"><a href="#Obs-777"><span class="linenos">777</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Obs-778"><a href="#Obs-778"><span class="linenos">778</span></a>
+</span><span id="Obs-779"><a href="#Obs-779"><span class="linenos">779</span></a>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-780"><a href="#Obs-780"><span class="linenos">780</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Obs-781"><a href="#Obs-781"><span class="linenos">781</span></a>
+</span><span id="Obs-782"><a href="#Obs-782"><span class="linenos">782</span></a>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-783"><a href="#Obs-783"><span class="linenos">783</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Obs-784"><a href="#Obs-784"><span class="linenos">784</span></a>
+</span><span id="Obs-785"><a href="#Obs-785"><span class="linenos">785</span></a>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-786"><a href="#Obs-786"><span class="linenos">786</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Obs-787"><a href="#Obs-787"><span class="linenos">787</span></a>
+</span><span id="Obs-788"><a href="#Obs-788"><span class="linenos">788</span></a>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-789"><a href="#Obs-789"><span class="linenos">789</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-790"><a href="#Obs-790"><span class="linenos">790</span></a>
+</span><span id="Obs-791"><a href="#Obs-791"><span class="linenos">791</span></a>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-792"><a href="#Obs-792"><span class="linenos">792</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-793"><a href="#Obs-793"><span class="linenos">793</span></a>
+</span><span id="Obs-794"><a href="#Obs-794"><span class="linenos">794</span></a>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-795"><a href="#Obs-795"><span class="linenos">795</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-796"><a href="#Obs-796"><span class="linenos">796</span></a>
+</span><span id="Obs-797"><a href="#Obs-797"><span class="linenos">797</span></a>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-798"><a href="#Obs-798"><span class="linenos">798</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Obs-799"><a href="#Obs-799"><span class="linenos">799</span></a>
+</span><span id="Obs-800"><a href="#Obs-800"><span class="linenos">800</span></a>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-801"><a href="#Obs-801"><span class="linenos">801</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span><span id="Obs-802"><a href="#Obs-802"><span class="linenos">802</span></a>
+</span><span id="Obs-803"><a href="#Obs-803"><span class="linenos">803</span></a>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-804"><a href="#Obs-804"><span class="linenos">804</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span><span id="Obs-805"><a href="#Obs-805"><span class="linenos">805</span></a>
+</span><span id="Obs-806"><a href="#Obs-806"><span class="linenos">806</span></a>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-807"><a href="#Obs-807"><span class="linenos">807</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-808"><a href="#Obs-808"><span class="linenos">808</span></a>
+</span><span id="Obs-809"><a href="#Obs-809"><span class="linenos">809</span></a>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-810"><a href="#Obs-810"><span class="linenos">810</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span><span id="Obs-811"><a href="#Obs-811"><span class="linenos">811</span></a>
+</span><span id="Obs-812"><a href="#Obs-812"><span class="linenos">812</span></a>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs-813"><a href="#Obs-813"><span class="linenos">813</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -2736,88 +2738,88 @@ this overwrites the standard value for that ensemble.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot; Initialize Obs object.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        samples : list</span>
-<span class="sd">            list of numpy arrays containing the Monte Carlo samples</span>
-<span class="sd">        names : list</span>
-<span class="sd">            list of strings labeling the individual samples</span>
-<span class="sd">        idl : list, optional</span>
-<span class="sd">            list of ranges or lists on which the samples are defined</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of samples and names incompatible.&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of idl incompatible with samples and names.&#39;</span><span class="p">)</span>
-            <span class="n">name_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">name_length</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">name_length</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">)):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;names are not unique.&#39;</span><span class="p">)</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">names</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="nb">min</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">samples</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Samples have to have at least 5 entries.&#39;</span><span class="p">)</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)):</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
-                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
-                    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
-                    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted idx for idl[</span><span class="si">%s</span><span class="s2">]&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;incompatible type for idl[</span><span class="si">%s</span><span class="s1">].&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span><span class="p">,</span> <span class="n">mean</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">))):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible samples and idx for </span><span class="si">%s</span><span class="s1">: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">/=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">False</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.__init__-56"><a href="#Obs.__init__-56"><span class="linenos"> 56</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Obs.__init__-57"><a href="#Obs.__init__-57"><span class="linenos"> 57</span></a>        <span class="sd">&quot;&quot;&quot; Initialize Obs object.</span>
+</span><span id="Obs.__init__-58"><a href="#Obs.__init__-58"><span class="linenos"> 58</span></a>
+</span><span id="Obs.__init__-59"><a href="#Obs.__init__-59"><span class="linenos"> 59</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.__init__-60"><a href="#Obs.__init__-60"><span class="linenos"> 60</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.__init__-61"><a href="#Obs.__init__-61"><span class="linenos"> 61</span></a><span class="sd">        samples : list</span>
+</span><span id="Obs.__init__-62"><a href="#Obs.__init__-62"><span class="linenos"> 62</span></a><span class="sd">            list of numpy arrays containing the Monte Carlo samples</span>
+</span><span id="Obs.__init__-63"><a href="#Obs.__init__-63"><span class="linenos"> 63</span></a><span class="sd">        names : list</span>
+</span><span id="Obs.__init__-64"><a href="#Obs.__init__-64"><span class="linenos"> 64</span></a><span class="sd">            list of strings labeling the individual samples</span>
+</span><span id="Obs.__init__-65"><a href="#Obs.__init__-65"><span class="linenos"> 65</span></a><span class="sd">        idl : list, optional</span>
+</span><span id="Obs.__init__-66"><a href="#Obs.__init__-66"><span class="linenos"> 66</span></a><span class="sd">            list of ranges or lists on which the samples are defined</span>
+</span><span id="Obs.__init__-67"><a href="#Obs.__init__-67"><span class="linenos"> 67</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.__init__-68"><a href="#Obs.__init__-68"><span class="linenos"> 68</span></a>
+</span><span id="Obs.__init__-69"><a href="#Obs.__init__-69"><span class="linenos"> 69</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">None</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
+</span><span id="Obs.__init__-70"><a href="#Obs.__init__-70"><span class="linenos"> 70</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
+</span><span id="Obs.__init__-71"><a href="#Obs.__init__-71"><span class="linenos"> 71</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of samples and names incompatible.&#39;</span><span class="p">)</span>
+</span><span id="Obs.__init__-72"><a href="#Obs.__init__-72"><span class="linenos"> 72</span></a>            <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs.__init__-73"><a href="#Obs.__init__-73"><span class="linenos"> 73</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">):</span>
+</span><span id="Obs.__init__-74"><a href="#Obs.__init__-74"><span class="linenos"> 74</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Length of idl incompatible with samples and names.&#39;</span><span class="p">)</span>
+</span><span id="Obs.__init__-75"><a href="#Obs.__init__-75"><span class="linenos"> 75</span></a>            <span class="n">name_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
+</span><span id="Obs.__init__-76"><a href="#Obs.__init__-76"><span class="linenos"> 76</span></a>            <span class="k">if</span> <span class="n">name_length</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.__init__-77"><a href="#Obs.__init__-77"><span class="linenos"> 77</span></a>                <span class="k">if</span> <span class="n">name_length</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">names</span><span class="p">)):</span>
+</span><span id="Obs.__init__-78"><a href="#Obs.__init__-78"><span class="linenos"> 78</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;names are not unique.&#39;</span><span class="p">)</span>
+</span><span id="Obs.__init__-79"><a href="#Obs.__init__-79"><span class="linenos"> 79</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">names</span><span class="p">):</span>
+</span><span id="Obs.__init__-80"><a href="#Obs.__init__-80"><span class="linenos"> 80</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
+</span><span id="Obs.__init__-81"><a href="#Obs.__init__-81"><span class="linenos"> 81</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.__init__-82"><a href="#Obs.__init__-82"><span class="linenos"> 82</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span>
+</span><span id="Obs.__init__-83"><a href="#Obs.__init__-83"><span class="linenos"> 83</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s1">&#39;All names have to be strings.&#39;</span><span class="p">)</span>
+</span><span id="Obs.__init__-84"><a href="#Obs.__init__-84"><span class="linenos"> 84</span></a>            <span class="k">if</span> <span class="nb">min</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">samples</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="mi">4</span><span class="p">:</span>
+</span><span id="Obs.__init__-85"><a href="#Obs.__init__-85"><span class="linenos"> 85</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Samples have to have at least 5 entries.&#39;</span><span class="p">)</span>
+</span><span id="Obs.__init__-86"><a href="#Obs.__init__-86"><span class="linenos"> 86</span></a>
+</span><span id="Obs.__init__-87"><a href="#Obs.__init__-87"><span class="linenos"> 87</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">names</span><span class="p">)</span>
+</span><span id="Obs.__init__-88"><a href="#Obs.__init__-88"><span class="linenos"> 88</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.__init__-89"><a href="#Obs.__init__-89"><span class="linenos"> 89</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.__init__-90"><a href="#Obs.__init__-90"><span class="linenos"> 90</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.__init__-91"><a href="#Obs.__init__-91"><span class="linenos"> 91</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.__init__-92"><a href="#Obs.__init__-92"><span class="linenos"> 92</span></a>
+</span><span id="Obs.__init__-93"><a href="#Obs.__init__-93"><span class="linenos"> 93</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.__init__-94"><a href="#Obs.__init__-94"><span class="linenos"> 94</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.__init__-95"><a href="#Obs.__init__-95"><span class="linenos"> 95</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.__init__-96"><a href="#Obs.__init__-96"><span class="linenos"> 96</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.__init__-97"><a href="#Obs.__init__-97"><span class="linenos"> 97</span></a>        <span class="k">if</span> <span class="n">idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs.__init__-98"><a href="#Obs.__init__-98"><span class="linenos"> 98</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">idx</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)):</span>
+</span><span id="Obs.__init__-99"><a href="#Obs.__init__-99"><span class="linenos"> 99</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs.__init__-100"><a href="#Obs.__init__-100"><span class="linenos">100</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">idx</span>
+</span><span id="Obs.__init__-101"><a href="#Obs.__init__-101"><span class="linenos">101</span></a>                <span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">idx</span><span class="p">,</span> <span class="p">(</span><span class="nb">list</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">)):</span>
+</span><span id="Obs.__init__-102"><a href="#Obs.__init__-102"><span class="linenos">102</span></a>                    <span class="n">dc</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">unique</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diff</span><span class="p">(</span><span class="n">idx</span><span class="p">))</span>
+</span><span id="Obs.__init__-103"><a href="#Obs.__init__-103"><span class="linenos">103</span></a>                    <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">(</span><span class="n">dc</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="Obs.__init__-104"><a href="#Obs.__init__-104"><span class="linenos">104</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unsorted idx for idl[</span><span class="si">%s</span><span class="s2">]&quot;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="Obs.__init__-105"><a href="#Obs.__init__-105"><span class="linenos">105</span></a>                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">dc</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.__init__-106"><a href="#Obs.__init__-106"><span class="linenos">106</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="n">idx</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">idx</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">dc</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="Obs.__init__-107"><a href="#Obs.__init__-107"><span class="linenos">107</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.__init__-108"><a href="#Obs.__init__-108"><span class="linenos">108</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span>
+</span><span id="Obs.__init__-109"><a href="#Obs.__init__-109"><span class="linenos">109</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.__init__-110"><a href="#Obs.__init__-110"><span class="linenos">110</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;incompatible type for idl[</span><span class="si">%s</span><span class="s1">].&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="Obs.__init__-111"><a href="#Obs.__init__-111"><span class="linenos">111</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.__init__-112"><a href="#Obs.__init__-112"><span class="linenos">112</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
+</span><span id="Obs.__init__-113"><a href="#Obs.__init__-113"><span class="linenos">113</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.__init__-114"><a href="#Obs.__init__-114"><span class="linenos">114</span></a>
+</span><span id="Obs.__init__-115"><a href="#Obs.__init__-115"><span class="linenos">115</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs.__init__-116"><a href="#Obs.__init__-116"><span class="linenos">116</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span><span class="p">,</span> <span class="n">mean</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;means&quot;</span><span class="p">))):</span>
+</span><span id="Obs.__init__-117"><a href="#Obs.__init__-117"><span class="linenos">117</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="Obs.__init__-118"><a href="#Obs.__init__-118"><span class="linenos">118</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs.__init__-119"><a href="#Obs.__init__-119"><span class="linenos">119</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="Obs.__init__-120"><a href="#Obs.__init__-120"><span class="linenos">120</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span>
+</span><span id="Obs.__init__-121"><a href="#Obs.__init__-121"><span class="linenos">121</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.__init__-122"><a href="#Obs.__init__-122"><span class="linenos">122</span></a>            <span class="k">for</span> <span class="n">name</span><span class="p">,</span> <span class="n">sample</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="n">names</span><span class="p">,</span> <span class="n">samples</span><span class="p">)):</span>
+</span><span id="Obs.__init__-123"><a href="#Obs.__init__-123"><span class="linenos">123</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="Obs.__init__-124"><a href="#Obs.__init__-124"><span class="linenos">124</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">N</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs.__init__-125"><a href="#Obs.__init__-125"><span class="linenos">125</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span> <span class="o">!=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="Obs.__init__-126"><a href="#Obs.__init__-126"><span class="linenos">126</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Incompatible samples and idx for </span><span class="si">%s</span><span class="s1">: </span><span class="si">%d</span><span class="s1"> vs. </span><span class="si">%d</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">sample</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
+</span><span id="Obs.__init__-127"><a href="#Obs.__init__-127"><span class="linenos">127</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">sample</span><span class="p">)</span>
+</span><span id="Obs.__init__-128"><a href="#Obs.__init__-128"><span class="linenos">128</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">sample</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs.__init__-129"><a href="#Obs.__init__-129"><span class="linenos">129</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs.__init__-130"><a href="#Obs.__init__-130"><span class="linenos">130</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_value</span> <span class="o">/=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
+</span><span id="Obs.__init__-131"><a href="#Obs.__init__-131"><span class="linenos">131</span></a>
+</span><span id="Obs.__init__-132"><a href="#Obs.__init__-132"><span class="linenos">132</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.__init__-133"><a href="#Obs.__init__-133"><span class="linenos">133</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.__init__-134"><a href="#Obs.__init__-134"><span class="linenos">134</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="Obs.__init__-135"><a href="#Obs.__init__-135"><span class="linenos">135</span></a>
+</span><span id="Obs.__init__-136"><a href="#Obs.__init__-136"><span class="linenos">136</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span></pre></div>
 
         </details>
 
@@ -3087,168 +3089,168 @@ list of ranges or lists on which the samples are defined</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Estimate the error and related properties of the Obs.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        S : float</span>
-<span class="sd">            specifies a custom value for the parameter S (default 2.0).</span>
-<span class="sd">            If set to 0 it is assumed that the data exhibits no</span>
-<span class="sd">            autocorrelation. In this case the error estimates coincides</span>
-<span class="sd">            with the sample standard error.</span>
-<span class="sd">        tau_exp : float</span>
-<span class="sd">            positive value triggers the critical slowing down analysis</span>
-<span class="sd">            (default 0.0).</span>
-<span class="sd">        N_sigma : float</span>
-<span class="sd">            number of standard deviations from zero until the tail is</span>
-<span class="sd">            attached to the autocorrelation function (default 1).</span>
-<span class="sd">        fft : bool</span>
-<span class="sd">            determines whether the fft algorithm is used for the computation</span>
-<span class="sd">            of the autocorrelation function (default True)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="n">e_content</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_content</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">e_gamma</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mi">0</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mi">0</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">S</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span> <span class="o">=</span> <span class="p">{}</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;fft&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
-            <span class="n">fft</span> <span class="o">=</span> <span class="kc">False</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">fft</span> <span class="o">=</span> <span class="kc">True</span>
-
-        <span class="k">def</span> <span class="nf">_parse_kwarg</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">):</span>
-            <span class="k">if</span> <span class="n">kwarg_name</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-                <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-                    <span class="k">if</span> <span class="n">tmp</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
-                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; has to be larger or equal to 0.&#39;</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; is not in proper format.&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
-                    <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">):</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_global&#39;</span><span class="p">)</span>
-
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;S&#39;</span><span class="p">)</span>
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;tau_exp&#39;</span><span class="p">)</span>
-        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;N_sigma&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
-
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]])</span>
-            <span class="n">w_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span>
-            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
-
-            <span class="n">gamma_div</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
-                <span class="n">gamma_div</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])),</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
-            <span class="n">gamma_div</span><span class="p">[</span><span class="n">gamma_div</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.0</span>
-            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/=</span> <span class="n">gamma_div</span><span class="p">[:</span><span class="n">w_max</span><span class="p">]</span>
-
-            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">tiny</span><span class="p">:</span>  <span class="c1"># Prevent division by zero</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">continue</span>
-
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">/</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(([</span><span class="mf">0.5</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:])))</span>
-            <span class="c1"># Make sure no entry of tauint is smaller than 0.5</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="mf">0.5</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span>
-            <span class="c1"># hep-lat/0306017 eq. (42)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-
-            <span class="k">def</span> <span class="nf">_compute_drho</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
-                <span class="n">tmp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">i</span><span class="p">]])</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="n">i</span><span class="p">]</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">tmp</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-
-            <span class="n">_compute_drho</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
-                <span class="c1"># Critical slowing down analysis</span>
-                <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">&lt;=</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Need at least 8 samples for tau_exp error analysis&quot;</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
-                    <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-                    <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
-                        <span class="c1"># Bias correction hep-lat/0306017 eq. (49) included</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>  <span class="c1"># The absolute makes sure, that the tail contribution is always positive</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
-                        <span class="c1"># Error of tau_exp neglected so far, missing term: self.e_rho[e_name][n + 1] ** 2 * d_tau_exp ** 2</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
-                        <span class="k">break</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="p">(</span><span class="n">e_N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                    <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="c1"># Standard automatic windowing procedure</span>
-                    <span class="n">tau</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">((</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-                    <span class="n">g_w</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">/</span> <span class="n">tau</span><span class="p">)</span> <span class="o">-</span> <span class="n">tau</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">*</span> <span class="n">e_N</span><span class="p">)</span>
-                    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">):</span>
-                        <span class="k">if</span> <span class="n">n</span> <span class="o">&lt;</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
-                            <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-                        <span class="k">if</span> <span class="n">g_w</span><span class="p">[</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>  <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
-                            <span class="k">break</span>
-
-            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">**</span> <span class="mi">2</span>
-
-        <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">**</span><span class="mi">2</span>
-
-        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">)</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-        <span class="k">return</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.gamma_method-171"><a href="#Obs.gamma_method-171"><span class="linenos">171</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-172"><a href="#Obs.gamma_method-172"><span class="linenos">172</span></a>        <span class="sd">&quot;&quot;&quot;Estimate the error and related properties of the Obs.</span>
+</span><span id="Obs.gamma_method-173"><a href="#Obs.gamma_method-173"><span class="linenos">173</span></a>
+</span><span id="Obs.gamma_method-174"><a href="#Obs.gamma_method-174"><span class="linenos">174</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.gamma_method-175"><a href="#Obs.gamma_method-175"><span class="linenos">175</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.gamma_method-176"><a href="#Obs.gamma_method-176"><span class="linenos">176</span></a><span class="sd">        S : float</span>
+</span><span id="Obs.gamma_method-177"><a href="#Obs.gamma_method-177"><span class="linenos">177</span></a><span class="sd">            specifies a custom value for the parameter S (default 2.0).</span>
+</span><span id="Obs.gamma_method-178"><a href="#Obs.gamma_method-178"><span class="linenos">178</span></a><span class="sd">            If set to 0 it is assumed that the data exhibits no</span>
+</span><span id="Obs.gamma_method-179"><a href="#Obs.gamma_method-179"><span class="linenos">179</span></a><span class="sd">            autocorrelation. In this case the error estimates coincides</span>
+</span><span id="Obs.gamma_method-180"><a href="#Obs.gamma_method-180"><span class="linenos">180</span></a><span class="sd">            with the sample standard error.</span>
+</span><span id="Obs.gamma_method-181"><a href="#Obs.gamma_method-181"><span class="linenos">181</span></a><span class="sd">        tau_exp : float</span>
+</span><span id="Obs.gamma_method-182"><a href="#Obs.gamma_method-182"><span class="linenos">182</span></a><span class="sd">            positive value triggers the critical slowing down analysis</span>
+</span><span id="Obs.gamma_method-183"><a href="#Obs.gamma_method-183"><span class="linenos">183</span></a><span class="sd">            (default 0.0).</span>
+</span><span id="Obs.gamma_method-184"><a href="#Obs.gamma_method-184"><span class="linenos">184</span></a><span class="sd">        N_sigma : float</span>
+</span><span id="Obs.gamma_method-185"><a href="#Obs.gamma_method-185"><span class="linenos">185</span></a><span class="sd">            number of standard deviations from zero until the tail is</span>
+</span><span id="Obs.gamma_method-186"><a href="#Obs.gamma_method-186"><span class="linenos">186</span></a><span class="sd">            attached to the autocorrelation function (default 1).</span>
+</span><span id="Obs.gamma_method-187"><a href="#Obs.gamma_method-187"><span class="linenos">187</span></a><span class="sd">        fft : bool</span>
+</span><span id="Obs.gamma_method-188"><a href="#Obs.gamma_method-188"><span class="linenos">188</span></a><span class="sd">            determines whether the fft algorithm is used for the computation</span>
+</span><span id="Obs.gamma_method-189"><a href="#Obs.gamma_method-189"><span class="linenos">189</span></a><span class="sd">            of the autocorrelation function (default True)</span>
+</span><span id="Obs.gamma_method-190"><a href="#Obs.gamma_method-190"><span class="linenos">190</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.gamma_method-191"><a href="#Obs.gamma_method-191"><span class="linenos">191</span></a>
+</span><span id="Obs.gamma_method-192"><a href="#Obs.gamma_method-192"><span class="linenos">192</span></a>        <span class="n">e_content</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_content</span>
+</span><span id="Obs.gamma_method-193"><a href="#Obs.gamma_method-193"><span class="linenos">193</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-194"><a href="#Obs.gamma_method-194"><span class="linenos">194</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-195"><a href="#Obs.gamma_method-195"><span class="linenos">195</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-196"><a href="#Obs.gamma_method-196"><span class="linenos">196</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-197"><a href="#Obs.gamma_method-197"><span class="linenos">197</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-198"><a href="#Obs.gamma_method-198"><span class="linenos">198</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-199"><a href="#Obs.gamma_method-199"><span class="linenos">199</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-200"><a href="#Obs.gamma_method-200"><span class="linenos">200</span></a>        <span class="n">e_gamma</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-201"><a href="#Obs.gamma_method-201"><span class="linenos">201</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-202"><a href="#Obs.gamma_method-202"><span class="linenos">202</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-203"><a href="#Obs.gamma_method-203"><span class="linenos">203</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.gamma_method-204"><a href="#Obs.gamma_method-204"><span class="linenos">204</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.gamma_method-205"><a href="#Obs.gamma_method-205"><span class="linenos">205</span></a>
+</span><span id="Obs.gamma_method-206"><a href="#Obs.gamma_method-206"><span class="linenos">206</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">S</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-207"><a href="#Obs.gamma_method-207"><span class="linenos">207</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-208"><a href="#Obs.gamma_method-208"><span class="linenos">208</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="Obs.gamma_method-209"><a href="#Obs.gamma_method-209"><span class="linenos">209</span></a>
+</span><span id="Obs.gamma_method-210"><a href="#Obs.gamma_method-210"><span class="linenos">210</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;fft&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-211"><a href="#Obs.gamma_method-211"><span class="linenos">211</span></a>            <span class="n">fft</span> <span class="o">=</span> <span class="kc">False</span>
+</span><span id="Obs.gamma_method-212"><a href="#Obs.gamma_method-212"><span class="linenos">212</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-213"><a href="#Obs.gamma_method-213"><span class="linenos">213</span></a>            <span class="n">fft</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="Obs.gamma_method-214"><a href="#Obs.gamma_method-214"><span class="linenos">214</span></a>
+</span><span id="Obs.gamma_method-215"><a href="#Obs.gamma_method-215"><span class="linenos">215</span></a>        <span class="k">def</span> <span class="nf">_parse_kwarg</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-216"><a href="#Obs.gamma_method-216"><span class="linenos">216</span></a>            <span class="k">if</span> <span class="n">kwarg_name</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-217"><a href="#Obs.gamma_method-217"><span class="linenos">217</span></a>                <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-218"><a href="#Obs.gamma_method-218"><span class="linenos">218</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+</span><span id="Obs.gamma_method-219"><a href="#Obs.gamma_method-219"><span class="linenos">219</span></a>                    <span class="k">if</span> <span class="n">tmp</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-220"><a href="#Obs.gamma_method-220"><span class="linenos">220</span></a>                        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; has to be larger or equal to 0.&#39;</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-221"><a href="#Obs.gamma_method-221"><span class="linenos">221</span></a>                    <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-222"><a href="#Obs.gamma_method-222"><span class="linenos">222</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
+</span><span id="Obs.gamma_method-223"><a href="#Obs.gamma_method-223"><span class="linenos">223</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-224"><a href="#Obs.gamma_method-224"><span class="linenos">224</span></a>                    <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39; is not in proper format.&#39;</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-225"><a href="#Obs.gamma_method-225"><span class="linenos">225</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-226"><a href="#Obs.gamma_method-226"><span class="linenos">226</span></a>                <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-227"><a href="#Obs.gamma_method-227"><span class="linenos">227</span></a>                    <span class="k">if</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-228"><a href="#Obs.gamma_method-228"><span class="linenos">228</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_dict&#39;</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span>
+</span><span id="Obs.gamma_method-229"><a href="#Obs.gamma_method-229"><span class="linenos">229</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-230"><a href="#Obs.gamma_method-230"><span class="linenos">230</span></a>                        <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">Obs</span><span class="p">,</span> <span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">&#39;_global&#39;</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-231"><a href="#Obs.gamma_method-231"><span class="linenos">231</span></a>
+</span><span id="Obs.gamma_method-232"><a href="#Obs.gamma_method-232"><span class="linenos">232</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;S&#39;</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-233"><a href="#Obs.gamma_method-233"><span class="linenos">233</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;tau_exp&#39;</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-234"><a href="#Obs.gamma_method-234"><span class="linenos">234</span></a>        <span class="n">_parse_kwarg</span><span class="p">(</span><span class="s1">&#39;N_sigma&#39;</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-235"><a href="#Obs.gamma_method-235"><span class="linenos">235</span></a>
+</span><span id="Obs.gamma_method-236"><a href="#Obs.gamma_method-236"><span class="linenos">236</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-237"><a href="#Obs.gamma_method-237"><span class="linenos">237</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs.gamma_method-238"><a href="#Obs.gamma_method-238"><span class="linenos">238</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="Obs.gamma_method-239"><a href="#Obs.gamma_method-239"><span class="linenos">239</span></a>                <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-240"><a href="#Obs.gamma_method-240"><span class="linenos">240</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="Obs.gamma_method-241"><a href="#Obs.gamma_method-241"><span class="linenos">241</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-242"><a href="#Obs.gamma_method-242"><span class="linenos">242</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs.gamma_method-243"><a href="#Obs.gamma_method-243"><span class="linenos">243</span></a>
+</span><span id="Obs.gamma_method-244"><a href="#Obs.gamma_method-244"><span class="linenos">244</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]])</span>
+</span><span id="Obs.gamma_method-245"><a href="#Obs.gamma_method-245"><span class="linenos">245</span></a>            <span class="n">w_max</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span>
+</span><span id="Obs.gamma_method-246"><a href="#Obs.gamma_method-246"><span class="linenos">246</span></a>            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-247"><a href="#Obs.gamma_method-247"><span class="linenos">247</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-248"><a href="#Obs.gamma_method-248"><span class="linenos">248</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-249"><a href="#Obs.gamma_method-249"><span class="linenos">249</span></a>
+</span><span id="Obs.gamma_method-250"><a href="#Obs.gamma_method-250"><span class="linenos">250</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="Obs.gamma_method-251"><a href="#Obs.gamma_method-251"><span class="linenos">251</span></a>                <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-252"><a href="#Obs.gamma_method-252"><span class="linenos">252</span></a>
+</span><span id="Obs.gamma_method-253"><a href="#Obs.gamma_method-253"><span class="linenos">253</span></a>            <span class="n">gamma_div</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-254"><a href="#Obs.gamma_method-254"><span class="linenos">254</span></a>            <span class="k">for</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]:</span>
+</span><span id="Obs.gamma_method-255"><a href="#Obs.gamma_method-255"><span class="linenos">255</span></a>                <span class="n">gamma_div</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_calc_gamma</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])),</span> <span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="n">w_max</span><span class="p">,</span> <span class="n">fft</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-256"><a href="#Obs.gamma_method-256"><span class="linenos">256</span></a>            <span class="n">gamma_div</span><span class="p">[</span><span class="n">gamma_div</span> <span class="o">&lt;</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="mf">1.0</span>
+</span><span id="Obs.gamma_method-257"><a href="#Obs.gamma_method-257"><span class="linenos">257</span></a>            <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/=</span> <span class="n">gamma_div</span><span class="p">[:</span><span class="n">w_max</span><span class="p">]</span>
+</span><span id="Obs.gamma_method-258"><a href="#Obs.gamma_method-258"><span class="linenos">258</span></a>
+</span><span id="Obs.gamma_method-259"><a href="#Obs.gamma_method-259"><span class="linenos">259</span></a>            <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">10</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">tiny</span><span class="p">:</span>  <span class="c1"># Prevent division by zero</span>
+</span><span id="Obs.gamma_method-260"><a href="#Obs.gamma_method-260"><span class="linenos">260</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
+</span><span id="Obs.gamma_method-261"><a href="#Obs.gamma_method-261"><span class="linenos">261</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.gamma_method-262"><a href="#Obs.gamma_method-262"><span class="linenos">262</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.gamma_method-263"><a href="#Obs.gamma_method-263"><span class="linenos">263</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.gamma_method-264"><a href="#Obs.gamma_method-264"><span class="linenos">264</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.gamma_method-265"><a href="#Obs.gamma_method-265"><span class="linenos">265</span></a>                <span class="k">continue</span>
+</span><span id="Obs.gamma_method-266"><a href="#Obs.gamma_method-266"><span class="linenos">266</span></a>
+</span><span id="Obs.gamma_method-267"><a href="#Obs.gamma_method-267"><span class="linenos">267</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">/</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Obs.gamma_method-268"><a href="#Obs.gamma_method-268"><span class="linenos">268</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cumsum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(([</span><span class="mf">0.5</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:])))</span>
+</span><span id="Obs.gamma_method-269"><a href="#Obs.gamma_method-269"><span class="linenos">269</span></a>            <span class="c1"># Make sure no entry of tauint is smaller than 0.5</span>
+</span><span id="Obs.gamma_method-270"><a href="#Obs.gamma_method-270"><span class="linenos">270</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&lt;=</span> <span class="mf">0.5</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span>
+</span><span id="Obs.gamma_method-271"><a href="#Obs.gamma_method-271"><span class="linenos">271</span></a>            <span class="c1"># hep-lat/0306017 eq. (42)</span>
+</span><span id="Obs.gamma_method-272"><a href="#Obs.gamma_method-272"><span class="linenos">272</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">w_max</span><span class="p">)</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-273"><a href="#Obs.gamma_method-273"><span class="linenos">273</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.gamma_method-274"><a href="#Obs.gamma_method-274"><span class="linenos">274</span></a>
+</span><span id="Obs.gamma_method-275"><a href="#Obs.gamma_method-275"><span class="linenos">275</span></a>            <span class="k">def</span> <span class="nf">_compute_drho</span><span class="p">(</span><span class="n">i</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-276"><a href="#Obs.gamma_method-276"><span class="linenos">276</span></a>                <span class="n">tmp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span><span class="n">w_max</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">::</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="n">i</span><span class="p">]])</span> <span class="o">-</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:</span><span class="n">w_max</span> <span class="o">-</span> <span class="n">i</span><span class="p">]</span>
+</span><span id="Obs.gamma_method-277"><a href="#Obs.gamma_method-277"><span class="linenos">277</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">tmp</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-278"><a href="#Obs.gamma_method-278"><span class="linenos">278</span></a>
+</span><span id="Obs.gamma_method-279"><a href="#Obs.gamma_method-279"><span class="linenos">279</span></a>            <span class="n">_compute_drho</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-280"><a href="#Obs.gamma_method-280"><span class="linenos">280</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-281"><a href="#Obs.gamma_method-281"><span class="linenos">281</span></a>                <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
+</span><span id="Obs.gamma_method-282"><a href="#Obs.gamma_method-282"><span class="linenos">282</span></a>                <span class="c1"># Critical slowing down analysis</span>
+</span><span id="Obs.gamma_method-283"><a href="#Obs.gamma_method-283"><span class="linenos">283</span></a>                <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">&lt;=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-284"><a href="#Obs.gamma_method-284"><span class="linenos">284</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Need at least 8 samples for tau_exp error analysis&quot;</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-285"><a href="#Obs.gamma_method-285"><span class="linenos">285</span></a>                <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-286"><a href="#Obs.gamma_method-286"><span class="linenos">286</span></a>                    <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-287"><a href="#Obs.gamma_method-287"><span class="linenos">287</span></a>                    <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-288"><a href="#Obs.gamma_method-288"><span class="linenos">288</span></a>                        <span class="c1"># Bias correction hep-lat/0306017 eq. (49) included</span>
+</span><span id="Obs.gamma_method-289"><a href="#Obs.gamma_method-289"><span class="linenos">289</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span>  <span class="c1"># The absolute makes sure, that the tail contribution is always positive</span>
+</span><span id="Obs.gamma_method-290"><a href="#Obs.gamma_method-290"><span class="linenos">290</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">texp</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-291"><a href="#Obs.gamma_method-291"><span class="linenos">291</span></a>                        <span class="c1"># Error of tau_exp neglected so far, missing term: self.e_rho[e_name][n + 1] ** 2 * d_tau_exp ** 2</span>
+</span><span id="Obs.gamma_method-292"><a href="#Obs.gamma_method-292"><span class="linenos">292</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-293"><a href="#Obs.gamma_method-293"><span class="linenos">293</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-294"><a href="#Obs.gamma_method-294"><span class="linenos">294</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
+</span><span id="Obs.gamma_method-295"><a href="#Obs.gamma_method-295"><span class="linenos">295</span></a>                        <span class="k">break</span>
+</span><span id="Obs.gamma_method-296"><a href="#Obs.gamma_method-296"><span class="linenos">296</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-297"><a href="#Obs.gamma_method-297"><span class="linenos">297</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-298"><a href="#Obs.gamma_method-298"><span class="linenos">298</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.5</span>
+</span><span id="Obs.gamma_method-299"><a href="#Obs.gamma_method-299"><span class="linenos">299</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.gamma_method-300"><a href="#Obs.gamma_method-300"><span class="linenos">300</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="p">(</span><span class="n">e_N</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs.gamma_method-301"><a href="#Obs.gamma_method-301"><span class="linenos">301</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mf">0.5</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-302"><a href="#Obs.gamma_method-302"><span class="linenos">302</span></a>                    <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.gamma_method-303"><a href="#Obs.gamma_method-303"><span class="linenos">303</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-304"><a href="#Obs.gamma_method-304"><span class="linenos">304</span></a>                    <span class="c1"># Standard automatic windowing procedure</span>
+</span><span id="Obs.gamma_method-305"><a href="#Obs.gamma_method-305"><span class="linenos">305</span></a>                    <span class="n">tau</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">((</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">1</span><span class="p">:]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs.gamma_method-306"><a href="#Obs.gamma_method-306"><span class="linenos">306</span></a>                    <span class="n">g_w</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">/</span> <span class="n">tau</span><span class="p">)</span> <span class="o">-</span> <span class="n">tau</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">)</span> <span class="o">*</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-307"><a href="#Obs.gamma_method-307"><span class="linenos">307</span></a>                    <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span><span class="p">):</span>
+</span><span id="Obs.gamma_method-308"><a href="#Obs.gamma_method-308"><span class="linenos">308</span></a>                        <span class="k">if</span> <span class="n">n</span> <span class="o">&lt;</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-309"><a href="#Obs.gamma_method-309"><span class="linenos">309</span></a>                            <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-310"><a href="#Obs.gamma_method-310"><span class="linenos">310</span></a>                        <span class="k">if</span> <span class="n">g_w</span><span class="p">[</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">&gt;=</span> <span class="n">w_max</span> <span class="o">-</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-311"><a href="#Obs.gamma_method-311"><span class="linenos">311</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>  <span class="c1"># Bias correction hep-lat/0306017 eq. (49)</span>
+</span><span id="Obs.gamma_method-312"><a href="#Obs.gamma_method-312"><span class="linenos">312</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span>
+</span><span id="Obs.gamma_method-313"><a href="#Obs.gamma_method-313"><span class="linenos">313</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">e_gamma</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-314"><a href="#Obs.gamma_method-314"><span class="linenos">314</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">((</span><span class="n">n</span> <span class="o">+</span> <span class="mf">0.5</span><span class="p">)</span> <span class="o">/</span> <span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-315"><a href="#Obs.gamma_method-315"><span class="linenos">315</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">n</span>
+</span><span id="Obs.gamma_method-316"><a href="#Obs.gamma_method-316"><span class="linenos">316</span></a>                            <span class="k">break</span>
+</span><span id="Obs.gamma_method-317"><a href="#Obs.gamma_method-317"><span class="linenos">317</span></a>
+</span><span id="Obs.gamma_method-318"><a href="#Obs.gamma_method-318"><span class="linenos">318</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="Obs.gamma_method-319"><a href="#Obs.gamma_method-319"><span class="linenos">319</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">+=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="Obs.gamma_method-320"><a href="#Obs.gamma_method-320"><span class="linenos">320</span></a>
+</span><span id="Obs.gamma_method-321"><a href="#Obs.gamma_method-321"><span class="linenos">321</span></a>        <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-322"><a href="#Obs.gamma_method-322"><span class="linenos">322</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
+</span><span id="Obs.gamma_method-323"><a href="#Obs.gamma_method-323"><span class="linenos">323</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.gamma_method-324"><a href="#Obs.gamma_method-324"><span class="linenos">324</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">**</span><span class="mi">2</span>
+</span><span id="Obs.gamma_method-325"><a href="#Obs.gamma_method-325"><span class="linenos">325</span></a>
+</span><span id="Obs.gamma_method-326"><a href="#Obs.gamma_method-326"><span class="linenos">326</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">)</span>
+</span><span id="Obs.gamma_method-327"><a href="#Obs.gamma_method-327"><span class="linenos">327</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-328"><a href="#Obs.gamma_method-328"><span class="linenos">328</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="mf">0.0</span>
+</span><span id="Obs.gamma_method-329"><a href="#Obs.gamma_method-329"><span class="linenos">329</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.gamma_method-330"><a href="#Obs.gamma_method-330"><span class="linenos">330</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">)</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span><span id="Obs.gamma_method-331"><a href="#Obs.gamma_method-331"><span class="linenos">331</span></a>        <span class="k">return</span>
+</span></pre></div>
 
         </details>
 
@@ -3286,67 +3288,67 @@ of the autocorrelation function (default True)</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">details</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ens_content</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Output detailed properties of the Obs.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        ens_content : bool</span>
-<span class="sd">            print details about the ensembles and replica if true.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Description:&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
-                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">*</span> <span class="mi">100</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> (</span><span class="si">%3.3f%%</span><span class="s1">)&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">,</span> <span class="n">percentage</span><span class="p">))</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; Ensemble errors:&#39;</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
-                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> tau_exp = </span><span class="si">%3.2f</span><span class="s1">,  N_sigma = </span><span class="si">%1.0i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> S = </span><span class="si">%3.2f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-        <span class="k">if</span> <span class="n">ens_content</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensemble:&#39;</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensembles:&#39;</span><span class="p">)</span>
-            <span class="n">my_string_list</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">items</span><span class="p">()):</span>
-                <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
-                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Ensemble &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                        <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
-                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="nb">range</span><span class="p">):</span>
-                            <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
-                        <span class="k">else</span><span class="p">:</span>
-                            <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">sublist</span> <span class="o">=</span> <span class="p">[]</span>
-                        <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">value</span><span class="p">:</span>
-                            <span class="n">my_substring</span> <span class="o">=</span> <span class="s1">&#39;    &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Replicum &#39;&quot;</span> <span class="o">+</span> <span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                            <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
-                            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
-                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
-                            <span class="k">else</span><span class="p">:</span>
-                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
-                            <span class="n">sublist</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_substring</span><span class="p">)</span>
-
-                        <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sublist</span><span class="p">)</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Covobs   &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
-                <span class="n">my_string_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_string</span><span class="p">)</span>
-            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">my_string_list</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.details-366"><a href="#Obs.details-366"><span class="linenos">366</span></a>    <span class="k">def</span> <span class="nf">details</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ens_content</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="Obs.details-367"><a href="#Obs.details-367"><span class="linenos">367</span></a>        <span class="sd">&quot;&quot;&quot;Output detailed properties of the Obs.</span>
+</span><span id="Obs.details-368"><a href="#Obs.details-368"><span class="linenos">368</span></a>
+</span><span id="Obs.details-369"><a href="#Obs.details-369"><span class="linenos">369</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.details-370"><a href="#Obs.details-370"><span class="linenos">370</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.details-371"><a href="#Obs.details-371"><span class="linenos">371</span></a><span class="sd">        ens_content : bool</span>
+</span><span id="Obs.details-372"><a href="#Obs.details-372"><span class="linenos">372</span></a><span class="sd">            print details about the ensembles and replica if true.</span>
+</span><span id="Obs.details-373"><a href="#Obs.details-373"><span class="linenos">373</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.details-374"><a href="#Obs.details-374"><span class="linenos">374</span></a>        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="Obs.details-375"><a href="#Obs.details-375"><span class="linenos">375</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;Description:&quot;</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
+</span><span id="Obs.details-376"><a href="#Obs.details-376"><span class="linenos">376</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs.details-377"><a href="#Obs.details-377"><span class="linenos">377</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">))</span>
+</span><span id="Obs.details-378"><a href="#Obs.details-378"><span class="linenos">378</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-379"><a href="#Obs.details-379"><span class="linenos">379</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+</span><span id="Obs.details-380"><a href="#Obs.details-380"><span class="linenos">380</span></a>                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
+</span><span id="Obs.details-381"><a href="#Obs.details-381"><span class="linenos">381</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-382"><a href="#Obs.details-382"><span class="linenos">382</span></a>                <span class="n">percentage</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">*</span> <span class="mi">100</span>
+</span><span id="Obs.details-383"><a href="#Obs.details-383"><span class="linenos">383</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;Result</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> (</span><span class="si">%3.3f%%</span><span class="s1">)&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">ddvalue</span><span class="p">,</span> <span class="n">percentage</span><span class="p">))</span>
+</span><span id="Obs.details-384"><a href="#Obs.details-384"><span class="linenos">384</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.details-385"><a href="#Obs.details-385"><span class="linenos">385</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; Ensemble errors:&#39;</span><span class="p">)</span>
+</span><span id="Obs.details-386"><a href="#Obs.details-386"><span class="linenos">386</span></a>            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">:</span>
+</span><span id="Obs.details-387"><a href="#Obs.details-387"><span class="linenos">387</span></a>                <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.details-388"><a href="#Obs.details-388"><span class="linenos">388</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_ddvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.details-389"><a href="#Obs.details-389"><span class="linenos">389</span></a>                <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs.details-390"><a href="#Obs.details-390"><span class="linenos">390</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> tau_exp = </span><span class="si">%3.2f</span><span class="s1">,  N_sigma = </span><span class="si">%1.0i</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.details-391"><a href="#Obs.details-391"><span class="linenos">391</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-392"><a href="#Obs.details-392"><span class="linenos">392</span></a>                    <span class="nb">print</span><span class="p">(</span><span class="s1">&#39; t_int</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1"> +/- </span><span class="si">%3.8e</span><span class="s1"> S = </span><span class="si">%3.2f</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.details-393"><a href="#Obs.details-393"><span class="linenos">393</span></a>            <span class="k">for</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="Obs.details-394"><a href="#Obs.details-394"><span class="linenos">394</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;</span><span class="se">\t</span><span class="s1"> </span><span class="si">%3.8e</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.details-395"><a href="#Obs.details-395"><span class="linenos">395</span></a>        <span class="k">if</span> <span class="n">ens_content</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="Obs.details-396"><a href="#Obs.details-396"><span class="linenos">396</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.details-397"><a href="#Obs.details-397"><span class="linenos">397</span></a>                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensemble:&#39;</span><span class="p">)</span>
+</span><span id="Obs.details-398"><a href="#Obs.details-398"><span class="linenos">398</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-399"><a href="#Obs.details-399"><span class="linenos">399</span></a>                <span class="nb">print</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="s1">&#39;samples in&#39;</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">),</span> <span class="s1">&#39;ensembles:&#39;</span><span class="p">)</span>
+</span><span id="Obs.details-400"><a href="#Obs.details-400"><span class="linenos">400</span></a>            <span class="n">my_string_list</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs.details-401"><a href="#Obs.details-401"><span class="linenos">401</span></a>            <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="o">.</span><span class="n">items</span><span class="p">()):</span>
+</span><span id="Obs.details-402"><a href="#Obs.details-402"><span class="linenos">402</span></a>                <span class="k">if</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="p">:</span>
+</span><span id="Obs.details-403"><a href="#Obs.details-403"><span class="linenos">403</span></a>                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Ensemble &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="Obs.details-404"><a href="#Obs.details-404"><span class="linenos">404</span></a>                    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.details-405"><a href="#Obs.details-405"><span class="linenos">405</span></a>                        <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
+</span><span id="Obs.details-406"><a href="#Obs.details-406"><span class="linenos">406</span></a>                        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs.details-407"><a href="#Obs.details-407"><span class="linenos">407</span></a>                            <span class="n">my_string</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">value</span><span class="p">[</span><span class="mi">0</span><span class="p">]]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
+</span><span id="Obs.details-408"><a href="#Obs.details-408"><span class="linenos">408</span></a>                        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-409"><a href="#Obs.details-409"><span class="linenos">409</span></a>                            <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
+</span><span id="Obs.details-410"><a href="#Obs.details-410"><span class="linenos">410</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-411"><a href="#Obs.details-411"><span class="linenos">411</span></a>                        <span class="n">sublist</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs.details-412"><a href="#Obs.details-412"><span class="linenos">412</span></a>                        <span class="k">for</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">value</span><span class="p">:</span>
+</span><span id="Obs.details-413"><a href="#Obs.details-413"><span class="linenos">413</span></a>                            <span class="n">my_substring</span> <span class="o">=</span> <span class="s1">&#39;    &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Replicum &#39;&quot;</span> <span class="o">+</span> <span class="n">v</span><span class="p">[</span><span class="nb">len</span><span class="p">(</span><span class="n">key</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:]</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="Obs.details-414"><a href="#Obs.details-414"><span class="linenos">414</span></a>                            <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39;: </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="si">}</span><span class="s1"> configurations&#39;</span>
+</span><span id="Obs.details-415"><a href="#Obs.details-415"><span class="linenos">415</span></a>                            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">],</span> <span class="nb">range</span><span class="p">):</span>
+</span><span id="Obs.details-416"><a href="#Obs.details-416"><span class="linenos">416</span></a>                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="sa">f</span><span class="s1">&#39; (from </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">start</span><span class="si">}</span><span class="s1"> to </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="sa">f</span><span class="s1">&#39; in steps of </span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">v</span><span class="p">]</span><span class="o">.</span><span class="n">step</span><span class="si">}</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;)&#39;</span>
+</span><span id="Obs.details-417"><a href="#Obs.details-417"><span class="linenos">417</span></a>                            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-418"><a href="#Obs.details-418"><span class="linenos">418</span></a>                                <span class="n">my_substring</span> <span class="o">+=</span> <span class="s1">&#39; (irregular range)&#39;</span>
+</span><span id="Obs.details-419"><a href="#Obs.details-419"><span class="linenos">419</span></a>                            <span class="n">sublist</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_substring</span><span class="p">)</span>
+</span><span id="Obs.details-420"><a href="#Obs.details-420"><span class="linenos">420</span></a>
+</span><span id="Obs.details-421"><a href="#Obs.details-421"><span class="linenos">421</span></a>                        <span class="n">my_string</span> <span class="o">+=</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span> <span class="o">+</span> <span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">sublist</span><span class="p">)</span>
+</span><span id="Obs.details-422"><a href="#Obs.details-422"><span class="linenos">422</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.details-423"><a href="#Obs.details-423"><span class="linenos">423</span></a>                    <span class="n">my_string</span> <span class="o">=</span> <span class="s1">&#39;  &#39;</span> <span class="o">+</span> <span class="s2">&quot;</span><span class="se">\u00B7</span><span class="s2"> Covobs   &#39;&quot;</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">&quot;&#39; &quot;</span>
+</span><span id="Obs.details-424"><a href="#Obs.details-424"><span class="linenos">424</span></a>                <span class="n">my_string_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">my_string</span><span class="p">)</span>
+</span><span id="Obs.details-425"><a href="#Obs.details-425"><span class="linenos">425</span></a>            <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">my_string_list</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -3372,18 +3374,18 @@ print details about the ensembles and replica if true.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">is_zero_within_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sigma</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within &#39;sigma&#39; standard errors.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        sigma : int</span>
-<span class="sd">            Number of standard errors used for the check.</span>
-
-<span class="sd">        Works only properly when the gamma method was run.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span> <span class="ow">or</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="n">sigma</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.is_zero_within_error-427"><a href="#Obs.is_zero_within_error-427"><span class="linenos">427</span></a>    <span class="k">def</span> <span class="nf">is_zero_within_error</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">sigma</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
+</span><span id="Obs.is_zero_within_error-428"><a href="#Obs.is_zero_within_error-428"><span class="linenos">428</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within &#39;sigma&#39; standard errors.</span>
+</span><span id="Obs.is_zero_within_error-429"><a href="#Obs.is_zero_within_error-429"><span class="linenos">429</span></a>
+</span><span id="Obs.is_zero_within_error-430"><a href="#Obs.is_zero_within_error-430"><span class="linenos">430</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.is_zero_within_error-431"><a href="#Obs.is_zero_within_error-431"><span class="linenos">431</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.is_zero_within_error-432"><a href="#Obs.is_zero_within_error-432"><span class="linenos">432</span></a><span class="sd">        sigma : int</span>
+</span><span id="Obs.is_zero_within_error-433"><a href="#Obs.is_zero_within_error-433"><span class="linenos">433</span></a><span class="sd">            Number of standard errors used for the check.</span>
+</span><span id="Obs.is_zero_within_error-434"><a href="#Obs.is_zero_within_error-434"><span class="linenos">434</span></a>
+</span><span id="Obs.is_zero_within_error-435"><a href="#Obs.is_zero_within_error-435"><span class="linenos">435</span></a><span class="sd">        Works only properly when the gamma method was run.</span>
+</span><span id="Obs.is_zero_within_error-436"><a href="#Obs.is_zero_within_error-436"><span class="linenos">436</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.is_zero_within_error-437"><a href="#Obs.is_zero_within_error-437"><span class="linenos">437</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">is_zero</span><span class="p">()</span> <span class="ow">or</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">&lt;=</span> <span class="n">sigma</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span>
+</span></pre></div>
 
         </details>
 
@@ -3410,16 +3412,16 @@ Number of standard errors used for the check.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-10</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within a given tolerance.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        atol : float</span>
-<span class="sd">            Absolute tolerance (for details see numpy documentation).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="o">.</span><span class="n">errsq</span><span class="p">(),</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.is_zero-439"><a href="#Obs.is_zero-439"><span class="linenos">439</span></a>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-10</span><span class="p">):</span>
+</span><span id="Obs.is_zero-440"><a href="#Obs.is_zero-440"><span class="linenos">440</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether the observable is zero within a given tolerance.</span>
+</span><span id="Obs.is_zero-441"><a href="#Obs.is_zero-441"><span class="linenos">441</span></a>
+</span><span id="Obs.is_zero-442"><a href="#Obs.is_zero-442"><span class="linenos">442</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.is_zero-443"><a href="#Obs.is_zero-443"><span class="linenos">443</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.is_zero-444"><a href="#Obs.is_zero-444"><span class="linenos">444</span></a><span class="sd">        atol : float</span>
+</span><span id="Obs.is_zero-445"><a href="#Obs.is_zero-445"><span class="linenos">445</span></a><span class="sd">            Absolute tolerance (for details see numpy documentation).</span>
+</span><span id="Obs.is_zero-446"><a href="#Obs.is_zero-446"><span class="linenos">446</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.is_zero-447"><a href="#Obs.is_zero-447"><span class="linenos">447</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="p">,</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> <span class="ow">and</span> <span class="nb">all</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">delta</span><span class="o">.</span><span class="n">errsq</span><span class="p">(),</span> <span class="mf">1e-14</span><span class="p">,</span> <span class="n">atol</span><span class="p">)</span> <span class="k">for</span> <span class="n">delta</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">values</span><span class="p">())</span>
+</span></pre></div>
 
         </details>
 
@@ -3445,45 +3447,46 @@ Absolute tolerance (for details see numpy documentation).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">plot_tauint</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot integrated autocorrelation time for each ensemble.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        save : str</span>
-<span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
-            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">base</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]]</span>
-                <span class="n">x_help</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
-                <span class="n">y_help</span> <span class="o">=</span> <span class="p">(</span><span class="n">x_help</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">x_help</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)))</span> <span class="o">+</span> <span class="n">base</span>
-                <span class="n">x_arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_arr</span><span class="p">,</span> <span class="n">y_help</span><span class="p">,</span> <span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
-                             <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
-                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, $\tau_\mathrm</span><span class="si">{exp}</span><span class="s1">$=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.plot_tauint-449"><a href="#Obs.plot_tauint-449"><span class="linenos">449</span></a>    <span class="k">def</span> <span class="nf">plot_tauint</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Obs.plot_tauint-450"><a href="#Obs.plot_tauint-450"><span class="linenos">450</span></a>        <span class="sd">&quot;&quot;&quot;Plot integrated autocorrelation time for each ensemble.</span>
+</span><span id="Obs.plot_tauint-451"><a href="#Obs.plot_tauint-451"><span class="linenos">451</span></a>
+</span><span id="Obs.plot_tauint-452"><a href="#Obs.plot_tauint-452"><span class="linenos">452</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.plot_tauint-453"><a href="#Obs.plot_tauint-453"><span class="linenos">453</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.plot_tauint-454"><a href="#Obs.plot_tauint-454"><span class="linenos">454</span></a><span class="sd">        save : str</span>
+</span><span id="Obs.plot_tauint-455"><a href="#Obs.plot_tauint-455"><span class="linenos">455</span></a><span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
+</span><span id="Obs.plot_tauint-456"><a href="#Obs.plot_tauint-456"><span class="linenos">456</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.plot_tauint-457"><a href="#Obs.plot_tauint-457"><span class="linenos">457</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs.plot_tauint-458"><a href="#Obs.plot_tauint-458"><span class="linenos">458</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-459"><a href="#Obs.plot_tauint-459"><span class="linenos">459</span></a>
+</span><span id="Obs.plot_tauint-460"><a href="#Obs.plot_tauint-460"><span class="linenos">460</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs.plot_tauint-461"><a href="#Obs.plot_tauint-461"><span class="linenos">461</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Obs.plot_tauint-462"><a href="#Obs.plot_tauint-462"><span class="linenos">462</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-463"><a href="#Obs.plot_tauint-463"><span class="linenos">463</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-464"><a href="#Obs.plot_tauint-464"><span class="linenos">464</span></a>            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.plot_tauint-465"><a href="#Obs.plot_tauint-465"><span class="linenos">465</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs.plot_tauint-466"><a href="#Obs.plot_tauint-466"><span class="linenos">466</span></a>                <span class="n">base</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]]</span>
+</span><span id="Obs.plot_tauint-467"><a href="#Obs.plot_tauint-467"><span class="linenos">467</span></a>                <span class="n">x_help</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
+</span><span id="Obs.plot_tauint-468"><a href="#Obs.plot_tauint-468"><span class="linenos">468</span></a>                <span class="n">y_help</span> <span class="o">=</span> <span class="p">(</span><span class="n">x_help</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">abs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span> <span class="o">-</span> <span class="n">x_help</span> <span class="o">/</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)))</span> <span class="o">+</span> <span class="n">base</span>
+</span><span id="Obs.plot_tauint-469"><a href="#Obs.plot_tauint-469"><span class="linenos">469</span></a>                <span class="n">x_arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span>
+</span><span id="Obs.plot_tauint-470"><a href="#Obs.plot_tauint-470"><span class="linenos">470</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">(</span><span class="n">x_arr</span><span class="p">,</span> <span class="n">y_help</span><span class="p">,</span> <span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-471"><a href="#Obs.plot_tauint-471"><span class="linenos">471</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
+</span><span id="Obs.plot_tauint-472"><a href="#Obs.plot_tauint-472"><span class="linenos">472</span></a>                             <span class="n">yerr</span><span class="o">=</span><span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;o&#39;</span><span class="p">,</span> <span class="n">mfc</span><span class="o">=</span><span class="n">plt</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;axes.facecolor&#39;</span><span class="p">])</span>
+</span><span id="Obs.plot_tauint-473"><a href="#Obs.plot_tauint-473"><span class="linenos">473</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
+</span><span id="Obs.plot_tauint-474"><a href="#Obs.plot_tauint-474"><span class="linenos">474</span></a>                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, $\tau_\mathrm</span><span class="si">{exp}</span><span class="s1">$=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
+</span><span id="Obs.plot_tauint-475"><a href="#Obs.plot_tauint-475"><span class="linenos">475</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.plot_tauint-476"><a href="#Obs.plot_tauint-476"><span class="linenos">476</span></a>                <span class="n">label</span> <span class="o">=</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">))</span>
+</span><span id="Obs.plot_tauint-477"><a href="#Obs.plot_tauint-477"><span class="linenos">477</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-478"><a href="#Obs.plot_tauint-478"><span class="linenos">478</span></a>
+</span><span id="Obs.plot_tauint-479"><a href="#Obs.plot_tauint-479"><span class="linenos">479</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">)[:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_dtauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="nb">int</span><span class="p">(</span><span class="n">xmax</span><span class="p">)],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-480"><a href="#Obs.plot_tauint-480"><span class="linenos">480</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;C&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">),</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-481"><a href="#Obs.plot_tauint-481"><span class="linenos">481</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">legend</span><span class="p">()</span>
+</span><span id="Obs.plot_tauint-482"><a href="#Obs.plot_tauint-482"><span class="linenos">482</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
+</span><span id="Obs.plot_tauint-483"><a href="#Obs.plot_tauint-483"><span class="linenos">483</span></a>            <span class="n">ylim</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">()</span>
+</span><span id="Obs.plot_tauint-484"><a href="#Obs.plot_tauint-484"><span class="linenos">484</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">,</span> <span class="n">top</span><span class="o">=</span><span class="nb">max</span><span class="p">(</span><span class="mf">1.0</span><span class="p">,</span> <span class="n">ylim</span><span class="p">[</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="Obs.plot_tauint-485"><a href="#Obs.plot_tauint-485"><span class="linenos">485</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs.plot_tauint-486"><a href="#Obs.plot_tauint-486"><span class="linenos">486</span></a>            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="Obs.plot_tauint-487"><a href="#Obs.plot_tauint-487"><span class="linenos">487</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -3509,37 +3512,37 @@ saves the figure to a file named 'save' if.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        save : str</span>
-<span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
-            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">length</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
-            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
-                         <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k-&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, tau\_exp=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
-                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.plot_rho-489"><a href="#Obs.plot_rho-489"><span class="linenos">489</span></a>    <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="Obs.plot_rho-490"><a href="#Obs.plot_rho-490"><span class="linenos">490</span></a>        <span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
+</span><span id="Obs.plot_rho-491"><a href="#Obs.plot_rho-491"><span class="linenos">491</span></a>
+</span><span id="Obs.plot_rho-492"><a href="#Obs.plot_rho-492"><span class="linenos">492</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.plot_rho-493"><a href="#Obs.plot_rho-493"><span class="linenos">493</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.plot_rho-494"><a href="#Obs.plot_rho-494"><span class="linenos">494</span></a><span class="sd">        save : str</span>
+</span><span id="Obs.plot_rho-495"><a href="#Obs.plot_rho-495"><span class="linenos">495</span></a><span class="sd">            saves the figure to a file named &#39;save&#39; if.</span>
+</span><span id="Obs.plot_rho-496"><a href="#Obs.plot_rho-496"><span class="linenos">496</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.plot_rho-497"><a href="#Obs.plot_rho-497"><span class="linenos">497</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs.plot_rho-498"><a href="#Obs.plot_rho-498"><span class="linenos">498</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-499"><a href="#Obs.plot_rho-499"><span class="linenos">499</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs.plot_rho-500"><a href="#Obs.plot_rho-500"><span class="linenos">500</span></a>            <span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Obs.plot_rho-501"><a href="#Obs.plot_rho-501"><span class="linenos">501</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-502"><a href="#Obs.plot_rho-502"><span class="linenos">502</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-503"><a href="#Obs.plot_rho-503"><span class="linenos">503</span></a>            <span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.plot_rho-504"><a href="#Obs.plot_rho-504"><span class="linenos">504</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">length</span><span class="p">),</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:</span><span class="n">length</span><span class="p">],</span> <span class="n">yerr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][:],</span> <span class="n">linewidth</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">capsize</span><span class="o">=</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-505"><a href="#Obs.plot_rho-505"><span class="linenos">505</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">axvline</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">color</span><span class="o">=</span><span class="s1">&#39;r&#39;</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.25</span><span class="p">,</span> <span class="n">ls</span><span class="o">=</span><span class="s1">&#39;--&#39;</span><span class="p">,</span> <span class="n">marker</span><span class="o">=</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-506"><a href="#Obs.plot_rho-506"><span class="linenos">506</span></a>            <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="Obs.plot_rho-507"><a href="#Obs.plot_rho-507"><span class="linenos">507</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]],</span>
+</span><span id="Obs.plot_rho-508"><a href="#Obs.plot_rho-508"><span class="linenos">508</span></a>                         <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k-&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-509"><a href="#Obs.plot_rho-509"><span class="linenos">509</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">+</span> <span class="mf">1.5</span>
+</span><span id="Obs.plot_rho-510"><a href="#Obs.plot_rho-510"><span class="linenos">510</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="sa">r</span><span class="s1">&#39;, tau\_exp=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
+</span><span id="Obs.plot_rho-511"><a href="#Obs.plot_rho-511"><span class="linenos">511</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.plot_rho-512"><a href="#Obs.plot_rho-512"><span class="linenos">512</span></a>                <span class="n">xmax</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="mf">10.5</span><span class="p">,</span> <span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_windowsize</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-513"><a href="#Obs.plot_rho-513"><span class="linenos">513</span></a>                <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Rho &#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39;, S=&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">around</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">S</span><span class="p">[</span><span class="n">e_name</span><span class="p">],</span> <span class="n">decimals</span><span class="o">=</span><span class="mi">2</span><span class="p">)))</span>
+</span><span id="Obs.plot_rho-514"><a href="#Obs.plot_rho-514"><span class="linenos">514</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-515"><a href="#Obs.plot_rho-515"><span class="linenos">515</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
+</span><span id="Obs.plot_rho-516"><a href="#Obs.plot_rho-516"><span class="linenos">516</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs.plot_rho-517"><a href="#Obs.plot_rho-517"><span class="linenos">517</span></a>            <span class="k">if</span> <span class="n">save</span><span class="p">:</span>
+</span><span id="Obs.plot_rho-518"><a href="#Obs.plot_rho-518"><span class="linenos">518</span></a>                <span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -3565,28 +3568,28 @@ saves the figure to a file named 'save' if.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No replica distribution for a single replicum (&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;)&#39;</span><span class="p">)</span>
-                <span class="k">continue</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">sub_r_mean</span> <span class="o">=</span> <span class="mi">0</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
-                <span class="n">sub_r_mean</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span>
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
-            <span class="n">sub_r_mean</span> <span class="o">/=</span> <span class="n">e_N</span>
-            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">arr</span><span class="p">[</span><span class="n">r</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="n">sub_r_mean</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_N</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">hist</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="n">rwidth</span><span class="o">=</span><span class="mf">0.8</span><span class="p">,</span> <span class="n">bins</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Replica distribution&#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39; (mean=0, var=1)&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.plot_rep_dist-520"><a href="#Obs.plot_rep_dist-520"><span class="linenos">520</span></a>    <span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.plot_rep_dist-521"><a href="#Obs.plot_rep_dist-521"><span class="linenos">521</span></a>        <span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
+</span><span id="Obs.plot_rep_dist-522"><a href="#Obs.plot_rep_dist-522"><span class="linenos">522</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs.plot_rep_dist-523"><a href="#Obs.plot_rep_dist-523"><span class="linenos">523</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_rep_dist-524"><a href="#Obs.plot_rep_dist-524"><span class="linenos">524</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs.plot_rep_dist-525"><a href="#Obs.plot_rep_dist-525"><span class="linenos">525</span></a>            <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">])</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.plot_rep_dist-526"><a href="#Obs.plot_rep_dist-526"><span class="linenos">526</span></a>                <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;No replica distribution for a single replicum (&#39;</span><span class="p">,</span> <span class="n">e_name</span><span class="p">,</span> <span class="s1">&#39;)&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_rep_dist-527"><a href="#Obs.plot_rep_dist-527"><span class="linenos">527</span></a>                <span class="k">continue</span>
+</span><span id="Obs.plot_rep_dist-528"><a href="#Obs.plot_rep_dist-528"><span class="linenos">528</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs.plot_rep_dist-529"><a href="#Obs.plot_rep_dist-529"><span class="linenos">529</span></a>            <span class="n">sub_r_mean</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="Obs.plot_rep_dist-530"><a href="#Obs.plot_rep_dist-530"><span class="linenos">530</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="Obs.plot_rep_dist-531"><a href="#Obs.plot_rep_dist-531"><span class="linenos">531</span></a>                <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]))</span>
+</span><span id="Obs.plot_rep_dist-532"><a href="#Obs.plot_rep_dist-532"><span class="linenos">532</span></a>                <span class="n">sub_r_mean</span> <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span>
+</span><span id="Obs.plot_rep_dist-533"><a href="#Obs.plot_rep_dist-533"><span class="linenos">533</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
+</span><span id="Obs.plot_rep_dist-534"><a href="#Obs.plot_rep_dist-534"><span class="linenos">534</span></a>            <span class="n">sub_r_mean</span> <span class="o">/=</span> <span class="n">e_N</span>
+</span><span id="Obs.plot_rep_dist-535"><a href="#Obs.plot_rep_dist-535"><span class="linenos">535</span></a>            <span class="n">arr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.plot_rep_dist-536"><a href="#Obs.plot_rep_dist-536"><span class="linenos">536</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="Obs.plot_rep_dist-537"><a href="#Obs.plot_rep_dist-537"><span class="linenos">537</span></a>                <span class="n">arr</span><span class="p">[</span><span class="n">r</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="n">sub_r_mean</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">e_N</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="Obs.plot_rep_dist-538"><a href="#Obs.plot_rep_dist-538"><span class="linenos">538</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">hist</span><span class="p">(</span><span class="n">arr</span><span class="p">,</span> <span class="n">rwidth</span><span class="o">=</span><span class="mf">0.8</span><span class="p">,</span> <span class="n">bins</span><span class="o">=</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
+</span><span id="Obs.plot_rep_dist-539"><a href="#Obs.plot_rep_dist-539"><span class="linenos">539</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s1">&#39;Replica distribution&#39;</span> <span class="o">+</span> <span class="n">e_name</span> <span class="o">+</span> <span class="s1">&#39; (mean=0, var=1)&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_rep_dist-540"><a href="#Obs.plot_rep_dist-540"><span class="linenos">540</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span></pre></div>
 
         </details>
 
@@ -3605,38 +3608,38 @@ saves the figure to a file named 'save' if.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">plot_history</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expand</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot derived Monte Carlo history for each ensemble</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        expand : bool</span>
-<span class="sd">            show expanded history for irregular Monte Carlo chains (default: True).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
-            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">tmp</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">tmp_expanded</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
-                <span class="n">tmp</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-                <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
-                    <span class="n">tmp_expanded</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_expand_deltas</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
-            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
-            <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">e_N</span><span class="p">)</span>
-            <span class="n">y_test</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
-                <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">y</span> <span class="o">=</span> <span class="n">y_test</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">e_N</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">skew: </span><span class="si">{</span><span class="n">skew</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">skewtest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">), kurtosis: </span><span class="si">{</span><span class="n">kurtosis</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">kurtosistest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">)&#39;</span><span class="p">)</span>
-            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.plot_history-542"><a href="#Obs.plot_history-542"><span class="linenos">542</span></a>    <span class="k">def</span> <span class="nf">plot_history</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">expand</span><span class="o">=</span><span class="kc">True</span><span class="p">):</span>
+</span><span id="Obs.plot_history-543"><a href="#Obs.plot_history-543"><span class="linenos">543</span></a>        <span class="sd">&quot;&quot;&quot;Plot derived Monte Carlo history for each ensemble</span>
+</span><span id="Obs.plot_history-544"><a href="#Obs.plot_history-544"><span class="linenos">544</span></a>
+</span><span id="Obs.plot_history-545"><a href="#Obs.plot_history-545"><span class="linenos">545</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.plot_history-546"><a href="#Obs.plot_history-546"><span class="linenos">546</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.plot_history-547"><a href="#Obs.plot_history-547"><span class="linenos">547</span></a><span class="sd">        expand : bool</span>
+</span><span id="Obs.plot_history-548"><a href="#Obs.plot_history-548"><span class="linenos">548</span></a><span class="sd">            show expanded history for irregular Monte Carlo chains (default: True).</span>
+</span><span id="Obs.plot_history-549"><a href="#Obs.plot_history-549"><span class="linenos">549</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.plot_history-550"><a href="#Obs.plot_history-550"><span class="linenos">550</span></a>        <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
+</span><span id="Obs.plot_history-551"><a href="#Obs.plot_history-551"><span class="linenos">551</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
+</span><span id="Obs.plot_history-552"><a href="#Obs.plot_history-552"><span class="linenos">552</span></a>            <span class="n">r_length</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs.plot_history-553"><a href="#Obs.plot_history-553"><span class="linenos">553</span></a>            <span class="n">tmp</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs.plot_history-554"><a href="#Obs.plot_history-554"><span class="linenos">554</span></a>            <span class="n">tmp_expanded</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="Obs.plot_history-555"><a href="#Obs.plot_history-555"><span class="linenos">555</span></a>            <span class="k">for</span> <span class="n">r</span><span class="p">,</span> <span class="n">r_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_content</span><span class="p">[</span><span class="n">e_name</span><span class="p">]):</span>
+</span><span id="Obs.plot_history-556"><a href="#Obs.plot_history-556"><span class="linenos">556</span></a>                <span class="n">tmp</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="Obs.plot_history-557"><a href="#Obs.plot_history-557"><span class="linenos">557</span></a>                <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
+</span><span id="Obs.plot_history-558"><a href="#Obs.plot_history-558"><span class="linenos">558</span></a>                    <span class="n">tmp_expanded</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">_expand_deltas</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">r_name</span><span class="p">],</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">r_name</span><span class="p">]),</span> <span class="bp">self</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">r_name</span><span class="p">])</span>
+</span><span id="Obs.plot_history-559"><a href="#Obs.plot_history-559"><span class="linenos">559</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="Obs.plot_history-560"><a href="#Obs.plot_history-560"><span class="linenos">560</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.plot_history-561"><a href="#Obs.plot_history-561"><span class="linenos">561</span></a>                    <span class="n">r_length</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">tmp</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
+</span><span id="Obs.plot_history-562"><a href="#Obs.plot_history-562"><span class="linenos">562</span></a>            <span class="n">e_N</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">r_length</span><span class="p">)</span>
+</span><span id="Obs.plot_history-563"><a href="#Obs.plot_history-563"><span class="linenos">563</span></a>            <span class="n">x</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="n">e_N</span><span class="p">)</span>
+</span><span id="Obs.plot_history-564"><a href="#Obs.plot_history-564"><span class="linenos">564</span></a>            <span class="n">y_test</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="Obs.plot_history-565"><a href="#Obs.plot_history-565"><span class="linenos">565</span></a>            <span class="k">if</span> <span class="n">expand</span><span class="p">:</span>
+</span><span id="Obs.plot_history-566"><a href="#Obs.plot_history-566"><span class="linenos">566</span></a>                <span class="n">y</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">concatenate</span><span class="p">(</span><span class="n">tmp_expanded</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
+</span><span id="Obs.plot_history-567"><a href="#Obs.plot_history-567"><span class="linenos">567</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.plot_history-568"><a href="#Obs.plot_history-568"><span class="linenos">568</span></a>                <span class="n">y</span> <span class="o">=</span> <span class="n">y_test</span>
+</span><span id="Obs.plot_history-569"><a href="#Obs.plot_history-569"><span class="linenos">569</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">errorbar</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span><span class="p">,</span> <span class="n">fmt</span><span class="o">=</span><span class="s1">&#39;.&#39;</span><span class="p">,</span> <span class="n">markersize</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+</span><span id="Obs.plot_history-570"><a href="#Obs.plot_history-570"><span class="linenos">570</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">e_N</span> <span class="o">-</span> <span class="mf">0.5</span><span class="p">)</span>
+</span><span id="Obs.plot_history-571"><a href="#Obs.plot_history-571"><span class="linenos">571</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="n">e_name</span> <span class="o">+</span> <span class="sa">f</span><span class="s1">&#39;</span><span class="se">\n</span><span class="s1">skew: </span><span class="si">{</span><span class="n">skew</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">skewtest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">), kurtosis: </span><span class="si">{</span><span class="n">kurtosis</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1"> (p=</span><span class="si">{</span><span class="n">kurtosistest</span><span class="p">(</span><span class="n">y_test</span><span class="p">)</span><span class="o">.</span><span class="n">pvalue</span><span class="si">:</span><span class="s1">.3f</span><span class="si">}</span><span class="s1">)&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_history-572"><a href="#Obs.plot_history-572"><span class="linenos">572</span></a>            <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span></pre></div>
 
         </details>
 
@@ -3662,22 +3665,22 @@ show expanded history for irregular Monte Carlo chains (default: True).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">plot_piechart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Plot piechart which shows the fractional contribution of each</span>
-<span class="sd">        ensemble to the error and returns a dictionary containing the fractions.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error is 0.0&#39;</span><span class="p">)</span>
-        <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
-        <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">pie</span><span class="p">(</span><span class="n">sizes</span><span class="p">,</span> <span class="n">labels</span><span class="o">=</span><span class="n">labels</span><span class="p">,</span> <span class="n">startangle</span><span class="o">=</span><span class="mi">90</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-        <span class="n">ax1</span><span class="o">.</span><span class="n">axis</span><span class="p">(</span><span class="s1">&#39;equal&#39;</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">,</span> <span class="n">sizes</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.plot_piechart-574"><a href="#Obs.plot_piechart-574"><span class="linenos">574</span></a>    <span class="k">def</span> <span class="nf">plot_piechart</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.plot_piechart-575"><a href="#Obs.plot_piechart-575"><span class="linenos">575</span></a>        <span class="sd">&quot;&quot;&quot;Plot piechart which shows the fractional contribution of each</span>
+</span><span id="Obs.plot_piechart-576"><a href="#Obs.plot_piechart-576"><span class="linenos">576</span></a><span class="sd">        ensemble to the error and returns a dictionary containing the fractions.&quot;&quot;&quot;</span>
+</span><span id="Obs.plot_piechart-577"><a href="#Obs.plot_piechart-577"><span class="linenos">577</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
+</span><span id="Obs.plot_piechart-578"><a href="#Obs.plot_piechart-578"><span class="linenos">578</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_piechart-579"><a href="#Obs.plot_piechart-579"><span class="linenos">579</span></a>        <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
+</span><span id="Obs.plot_piechart-580"><a href="#Obs.plot_piechart-580"><span class="linenos">580</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error is 0.0&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_piechart-581"><a href="#Obs.plot_piechart-581"><span class="linenos">581</span></a>        <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
+</span><span id="Obs.plot_piechart-582"><a href="#Obs.plot_piechart-582"><span class="linenos">582</span></a>        <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="Obs.plot_piechart-583"><a href="#Obs.plot_piechart-583"><span class="linenos">583</span></a>        <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
+</span><span id="Obs.plot_piechart-584"><a href="#Obs.plot_piechart-584"><span class="linenos">584</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">pie</span><span class="p">(</span><span class="n">sizes</span><span class="p">,</span> <span class="n">labels</span><span class="o">=</span><span class="n">labels</span><span class="p">,</span> <span class="n">startangle</span><span class="o">=</span><span class="mi">90</span><span class="p">,</span> <span class="n">normalize</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+</span><span id="Obs.plot_piechart-585"><a href="#Obs.plot_piechart-585"><span class="linenos">585</span></a>        <span class="n">ax1</span><span class="o">.</span><span class="n">axis</span><span class="p">(</span><span class="s1">&#39;equal&#39;</span><span class="p">)</span>
+</span><span id="Obs.plot_piechart-586"><a href="#Obs.plot_piechart-586"><span class="linenos">586</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="Obs.plot_piechart-587"><a href="#Obs.plot_piechart-587"><span class="linenos">587</span></a>
+</span><span id="Obs.plot_piechart-588"><a href="#Obs.plot_piechart-588"><span class="linenos">588</span></a>        <span class="k">return</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">zip</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">,</span> <span class="n">sizes</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -3697,35 +3700,35 @@ ensemble to the error and returns a dictionary containing the fractions.</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Dump the Obs to a file &#39;name&#39; of chosen format.</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        filename : str</span>
-<span class="sd">            name of the file to be saved.</span>
-<span class="sd">        datatype : str</span>
-<span class="sd">            Format of the exported file. Supported formats include</span>
-<span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
-<span class="sd">        description : str</span>
-<span class="sd">            Description for output file, only relevant for json.gz format.</span>
-<span class="sd">        path : str</span>
-<span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-            <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
-
-        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
-            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
-            <span class="n">dump_to_json</span><span class="p">([</span><span class="bp">self</span><span class="p">],</span> <span class="n">file_name</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
-            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
-                <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.dump-590"><a href="#Obs.dump-590"><span class="linenos">590</span></a>    <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename</span><span class="p">,</span> <span class="n">datatype</span><span class="o">=</span><span class="s2">&quot;json.gz&quot;</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="s2">&quot;&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="Obs.dump-591"><a href="#Obs.dump-591"><span class="linenos">591</span></a>        <span class="sd">&quot;&quot;&quot;Dump the Obs to a file &#39;name&#39; of chosen format.</span>
+</span><span id="Obs.dump-592"><a href="#Obs.dump-592"><span class="linenos">592</span></a>
+</span><span id="Obs.dump-593"><a href="#Obs.dump-593"><span class="linenos">593</span></a><span class="sd">        Parameters</span>
+</span><span id="Obs.dump-594"><a href="#Obs.dump-594"><span class="linenos">594</span></a><span class="sd">        ----------</span>
+</span><span id="Obs.dump-595"><a href="#Obs.dump-595"><span class="linenos">595</span></a><span class="sd">        filename : str</span>
+</span><span id="Obs.dump-596"><a href="#Obs.dump-596"><span class="linenos">596</span></a><span class="sd">            name of the file to be saved.</span>
+</span><span id="Obs.dump-597"><a href="#Obs.dump-597"><span class="linenos">597</span></a><span class="sd">        datatype : str</span>
+</span><span id="Obs.dump-598"><a href="#Obs.dump-598"><span class="linenos">598</span></a><span class="sd">            Format of the exported file. Supported formats include</span>
+</span><span id="Obs.dump-599"><a href="#Obs.dump-599"><span class="linenos">599</span></a><span class="sd">            &quot;json.gz&quot; and &quot;pickle&quot;</span>
+</span><span id="Obs.dump-600"><a href="#Obs.dump-600"><span class="linenos">600</span></a><span class="sd">        description : str</span>
+</span><span id="Obs.dump-601"><a href="#Obs.dump-601"><span class="linenos">601</span></a><span class="sd">            Description for output file, only relevant for json.gz format.</span>
+</span><span id="Obs.dump-602"><a href="#Obs.dump-602"><span class="linenos">602</span></a><span class="sd">        path : str</span>
+</span><span id="Obs.dump-603"><a href="#Obs.dump-603"><span class="linenos">603</span></a><span class="sd">            specifies a custom path for the file (default &#39;.&#39;)</span>
+</span><span id="Obs.dump-604"><a href="#Obs.dump-604"><span class="linenos">604</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.dump-605"><a href="#Obs.dump-605"><span class="linenos">605</span></a>        <span class="k">if</span> <span class="s1">&#39;path&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="Obs.dump-606"><a href="#Obs.dump-606"><span class="linenos">606</span></a>            <span class="n">file_name</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;path&#39;</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;/&#39;</span> <span class="o">+</span> <span class="n">filename</span>
+</span><span id="Obs.dump-607"><a href="#Obs.dump-607"><span class="linenos">607</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.dump-608"><a href="#Obs.dump-608"><span class="linenos">608</span></a>            <span class="n">file_name</span> <span class="o">=</span> <span class="n">filename</span>
+</span><span id="Obs.dump-609"><a href="#Obs.dump-609"><span class="linenos">609</span></a>
+</span><span id="Obs.dump-610"><a href="#Obs.dump-610"><span class="linenos">610</span></a>        <span class="k">if</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;json.gz&quot;</span><span class="p">:</span>
+</span><span id="Obs.dump-611"><a href="#Obs.dump-611"><span class="linenos">611</span></a>            <span class="kn">from</span> <span class="nn">.input.json</span> <span class="kn">import</span> <span class="n">dump_to_json</span>
+</span><span id="Obs.dump-612"><a href="#Obs.dump-612"><span class="linenos">612</span></a>            <span class="n">dump_to_json</span><span class="p">([</span><span class="bp">self</span><span class="p">],</span> <span class="n">file_name</span><span class="p">,</span> <span class="n">description</span><span class="o">=</span><span class="n">description</span><span class="p">)</span>
+</span><span id="Obs.dump-613"><a href="#Obs.dump-613"><span class="linenos">613</span></a>        <span class="k">elif</span> <span class="n">datatype</span> <span class="o">==</span> <span class="s2">&quot;pickle&quot;</span><span class="p">:</span>
+</span><span id="Obs.dump-614"><a href="#Obs.dump-614"><span class="linenos">614</span></a>            <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">&#39;.p&#39;</span><span class="p">,</span> <span class="s1">&#39;wb&#39;</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
+</span><span id="Obs.dump-615"><a href="#Obs.dump-615"><span class="linenos">615</span></a>                <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
+</span><span id="Obs.dump-616"><a href="#Obs.dump-616"><span class="linenos">616</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="Obs.dump-617"><a href="#Obs.dump-617"><span class="linenos">617</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Unknown datatype &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
+</span></pre></div>
 
         </details>
 
@@ -3758,32 +3761,32 @@ specifies a custom path for the file (default '.')</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Export jackknife samples from the Obs</span>
-
-<span class="sd">        Returns</span>
-<span class="sd">        -------</span>
-<span class="sd">        numpy.ndarray</span>
-<span class="sd">            Returns a numpy array of length N + 1 where N is the number of samples</span>
-<span class="sd">            for the given ensemble and replicum. The zeroth entry of the array contains</span>
-<span class="sd">            the mean value of the Obs, entries 1 to N contain the N jackknife samples</span>
-<span class="sd">            derived from the Obs. The current implementation only works for observables</span>
-<span class="sd">            defined on exactly one ensemble and replicum. The derived jackknife samples</span>
-<span class="sd">            should agree with samples from a full jackknife analysis up to O(1/N).</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;export_jackknife&#39; is only implemented for Obs defined on one ensemble and replicum.&quot;</span><span class="p">)</span>
-
-        <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-        <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-        <span class="n">n</span> <span class="o">=</span> <span class="n">full_data</span><span class="o">.</span><span class="n">size</span>
-        <span class="n">mean</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span>
-        <span class="n">tmp_jacks</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
-        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">mean</span> <span class="o">-</span> <span class="n">full_data</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
-        <span class="k">return</span> <span class="n">tmp_jacks</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.export_jackknife-619"><a href="#Obs.export_jackknife-619"><span class="linenos">619</span></a>    <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.export_jackknife-620"><a href="#Obs.export_jackknife-620"><span class="linenos">620</span></a>        <span class="sd">&quot;&quot;&quot;Export jackknife samples from the Obs</span>
+</span><span id="Obs.export_jackknife-621"><a href="#Obs.export_jackknife-621"><span class="linenos">621</span></a>
+</span><span id="Obs.export_jackknife-622"><a href="#Obs.export_jackknife-622"><span class="linenos">622</span></a><span class="sd">        Returns</span>
+</span><span id="Obs.export_jackknife-623"><a href="#Obs.export_jackknife-623"><span class="linenos">623</span></a><span class="sd">        -------</span>
+</span><span id="Obs.export_jackknife-624"><a href="#Obs.export_jackknife-624"><span class="linenos">624</span></a><span class="sd">        numpy.ndarray</span>
+</span><span id="Obs.export_jackknife-625"><a href="#Obs.export_jackknife-625"><span class="linenos">625</span></a><span class="sd">            Returns a numpy array of length N + 1 where N is the number of samples</span>
+</span><span id="Obs.export_jackknife-626"><a href="#Obs.export_jackknife-626"><span class="linenos">626</span></a><span class="sd">            for the given ensemble and replicum. The zeroth entry of the array contains</span>
+</span><span id="Obs.export_jackknife-627"><a href="#Obs.export_jackknife-627"><span class="linenos">627</span></a><span class="sd">            the mean value of the Obs, entries 1 to N contain the N jackknife samples</span>
+</span><span id="Obs.export_jackknife-628"><a href="#Obs.export_jackknife-628"><span class="linenos">628</span></a><span class="sd">            derived from the Obs. The current implementation only works for observables</span>
+</span><span id="Obs.export_jackknife-629"><a href="#Obs.export_jackknife-629"><span class="linenos">629</span></a><span class="sd">            defined on exactly one ensemble and replicum. The derived jackknife samples</span>
+</span><span id="Obs.export_jackknife-630"><a href="#Obs.export_jackknife-630"><span class="linenos">630</span></a><span class="sd">            should agree with samples from a full jackknife analysis up to O(1/N).</span>
+</span><span id="Obs.export_jackknife-631"><a href="#Obs.export_jackknife-631"><span class="linenos">631</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="Obs.export_jackknife-632"><a href="#Obs.export_jackknife-632"><span class="linenos">632</span></a>
+</span><span id="Obs.export_jackknife-633"><a href="#Obs.export_jackknife-633"><span class="linenos">633</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="Obs.export_jackknife-634"><a href="#Obs.export_jackknife-634"><span class="linenos">634</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;&#39;export_jackknife&#39; is only implemented for Obs defined on one ensemble and replicum.&quot;</span><span class="p">)</span>
+</span><span id="Obs.export_jackknife-635"><a href="#Obs.export_jackknife-635"><span class="linenos">635</span></a>
+</span><span id="Obs.export_jackknife-636"><a href="#Obs.export_jackknife-636"><span class="linenos">636</span></a>        <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="Obs.export_jackknife-637"><a href="#Obs.export_jackknife-637"><span class="linenos">637</span></a>        <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="Obs.export_jackknife-638"><a href="#Obs.export_jackknife-638"><span class="linenos">638</span></a>        <span class="n">n</span> <span class="o">=</span> <span class="n">full_data</span><span class="o">.</span><span class="n">size</span>
+</span><span id="Obs.export_jackknife-639"><a href="#Obs.export_jackknife-639"><span class="linenos">639</span></a>        <span class="n">mean</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span>
+</span><span id="Obs.export_jackknife-640"><a href="#Obs.export_jackknife-640"><span class="linenos">640</span></a>        <span class="n">tmp_jacks</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.export_jackknife-641"><a href="#Obs.export_jackknife-641"><span class="linenos">641</span></a>        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">mean</span>
+</span><span id="Obs.export_jackknife-642"><a href="#Obs.export_jackknife-642"><span class="linenos">642</span></a>        <span class="n">tmp_jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">=</span> <span class="p">(</span><span class="n">n</span> <span class="o">*</span> <span class="n">mean</span> <span class="o">-</span> <span class="n">full_data</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>
+</span><span id="Obs.export_jackknife-643"><a href="#Obs.export_jackknife-643"><span class="linenos">643</span></a>        <span class="k">return</span> <span class="n">tmp_jacks</span>
+</span></pre></div>
 
         </details>
 
@@ -3813,9 +3816,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.sqrt-770"><a href="#Obs.sqrt-770"><span class="linenos">770</span></a>    <span class="k">def</span> <span class="nf">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.sqrt-771"><a href="#Obs.sqrt-771"><span class="linenos">771</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span></pre></div>
 
         </details>
 
@@ -3832,9 +3835,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.log-773"><a href="#Obs.log-773"><span class="linenos">773</span></a>    <span class="k">def</span> <span class="nf">log</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.log-774"><a href="#Obs.log-774"><span class="linenos">774</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -3851,9 +3854,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.exp-776"><a href="#Obs.exp-776"><span class="linenos">776</span></a>    <span class="k">def</span> <span class="nf">exp</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.exp-777"><a href="#Obs.exp-777"><span class="linenos">777</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span></pre></div>
 
         </details>
 
@@ -3870,9 +3873,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.sin-779"><a href="#Obs.sin-779"><span class="linenos">779</span></a>    <span class="k">def</span> <span class="nf">sin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.sin-780"><a href="#Obs.sin-780"><span class="linenos">780</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span></pre></div>
 
         </details>
 
@@ -3889,9 +3892,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.cos-782"><a href="#Obs.cos-782"><span class="linenos">782</span></a>    <span class="k">def</span> <span class="nf">cos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.cos-783"><a href="#Obs.cos-783"><span class="linenos">783</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span></pre></div>
 
         </details>
 
@@ -3908,9 +3911,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.tan-785"><a href="#Obs.tan-785"><span class="linenos">785</span></a>    <span class="k">def</span> <span class="nf">tan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.tan-786"><a href="#Obs.tan-786"><span class="linenos">786</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -3927,9 +3930,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.arcsin-788"><a href="#Obs.arcsin-788"><span class="linenos">788</span></a>    <span class="k">def</span> <span class="nf">arcsin</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.arcsin-789"><a href="#Obs.arcsin-789"><span class="linenos">789</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsin</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -3946,9 +3949,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.arccos-791"><a href="#Obs.arccos-791"><span class="linenos">791</span></a>    <span class="k">def</span> <span class="nf">arccos</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.arccos-792"><a href="#Obs.arccos-792"><span class="linenos">792</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccos</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -3965,9 +3968,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.arctan-794"><a href="#Obs.arctan-794"><span class="linenos">794</span></a>    <span class="k">def</span> <span class="nf">arctan</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.arctan-795"><a href="#Obs.arctan-795"><span class="linenos">795</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctan</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -3984,9 +3987,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.sinh-797"><a href="#Obs.sinh-797"><span class="linenos">797</span></a>    <span class="k">def</span> <span class="nf">sinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.sinh-798"><a href="#Obs.sinh-798"><span class="linenos">798</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span></pre></div>
 
         </details>
 
@@ -4003,9 +4006,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.cosh-800"><a href="#Obs.cosh-800"><span class="linenos">800</span></a>    <span class="k">def</span> <span class="nf">cosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.cosh-801"><a href="#Obs.cosh-801"><span class="linenos">801</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sinh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)])</span>
+</span></pre></div>
 
         </details>
 
@@ -4022,9 +4025,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.tanh-803"><a href="#Obs.tanh-803"><span class="linenos">803</span></a>    <span class="k">def</span> <span class="nf">tanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.tanh-804"><a href="#Obs.tanh-804"><span class="linenos">804</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">tanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">cosh</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="o">**</span> <span class="mi">2</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -4041,9 +4044,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.arcsinh-806"><a href="#Obs.arcsinh-806"><span class="linenos">806</span></a>    <span class="k">def</span> <span class="nf">arcsinh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.arcsinh-807"><a href="#Obs.arcsinh-807"><span class="linenos">807</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arcsinh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -4060,9 +4063,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.arccosh-809"><a href="#Obs.arccosh-809"><span class="linenos">809</span></a>    <span class="k">def</span> <span class="nf">arccosh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.arccosh-810"><a href="#Obs.arccosh-810"><span class="linenos">810</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arccosh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -4079,9 +4082,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Obs.arctanh-812"><a href="#Obs.arctanh-812"><span class="linenos">812</span></a>    <span class="k">def</span> <span class="nf">arctanh</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="Obs.arctanh-813"><a href="#Obs.arctanh-813"><span class="linenos">813</span></a>        <span class="k">return</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">anp</span><span class="o">.</span><span class="n">arctanh</span><span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span> <span class="p">[</span><span class="bp">self</span><span class="p">])</span>
+</span></pre></div>
 
         </details>
 
@@ -4220,116 +4223,116 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">class</span> <span class="nc">CObs</span><span class="p">:</span>
-    <span class="sd">&quot;&quot;&quot;Class for a complex valued observable.&quot;&quot;&quot;</span>
-    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;_real&#39;</span><span class="p">,</span> <span class="s1">&#39;_imag&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">]</span>
-
-    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_real</span> <span class="o">=</span> <span class="n">real</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span> <span class="o">=</span> <span class="n">imag</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_real</span>
-
-    <span class="nd">@property</span>
-    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span>
-
-    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Executes the gamma_method for the real and the imaginary part.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether both real and imaginary part are zero within machine precision.&quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="mf">0.0</span>
-
-    <span class="k">def</span> <span class="nf">conjugate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">other</span> <span class="o">+</span> <span class="bp">self</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span>
-                        <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
-
-    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="n">other</span> <span class="o">-</span> <span class="bp">self</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">other</span> <span class="o">*</span> <span class="bp">self</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">]):</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
-                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
-                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">]),</span>
-                            <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
-                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
-                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">]))</span>
-            <span class="k">elif</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span>
-                            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">other</span>
-
-    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
-            <span class="k">return</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="n">other</span> <span class="o">/</span> <span class="bp">self</span><span class="p">)</span>
-        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="n">r</span> <span class="o">=</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">/</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">/</span> <span class="n">other</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="n">r</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
-        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">**</span><span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span>
-
-    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
-
-    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span>
-
-    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s1">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">&gt;=</span> <span class="mf">0.0</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;+&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;j)&#39;</span>
-
-    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="s1">&#39;CObs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="CObs-816"><a href="#CObs-816"><span class="linenos">816</span></a><span class="k">class</span> <span class="nc">CObs</span><span class="p">:</span>
+</span><span id="CObs-817"><a href="#CObs-817"><span class="linenos">817</span></a>    <span class="sd">&quot;&quot;&quot;Class for a complex valued observable.&quot;&quot;&quot;</span>
+</span><span id="CObs-818"><a href="#CObs-818"><span class="linenos">818</span></a>    <span class="vm">__slots__</span> <span class="o">=</span> <span class="p">[</span><span class="s1">&#39;_real&#39;</span><span class="p">,</span> <span class="s1">&#39;_imag&#39;</span><span class="p">,</span> <span class="s1">&#39;tag&#39;</span><span class="p">]</span>
+</span><span id="CObs-819"><a href="#CObs-819"><span class="linenos">819</span></a>
+</span><span id="CObs-820"><a href="#CObs-820"><span class="linenos">820</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
+</span><span id="CObs-821"><a href="#CObs-821"><span class="linenos">821</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_real</span> <span class="o">=</span> <span class="n">real</span>
+</span><span id="CObs-822"><a href="#CObs-822"><span class="linenos">822</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span> <span class="o">=</span> <span class="n">imag</span>
+</span><span id="CObs-823"><a href="#CObs-823"><span class="linenos">823</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span><span id="CObs-824"><a href="#CObs-824"><span class="linenos">824</span></a>
+</span><span id="CObs-825"><a href="#CObs-825"><span class="linenos">825</span></a>    <span class="nd">@property</span>
+</span><span id="CObs-826"><a href="#CObs-826"><span class="linenos">826</span></a>    <span class="k">def</span> <span class="nf">real</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-827"><a href="#CObs-827"><span class="linenos">827</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_real</span>
+</span><span id="CObs-828"><a href="#CObs-828"><span class="linenos">828</span></a>
+</span><span id="CObs-829"><a href="#CObs-829"><span class="linenos">829</span></a>    <span class="nd">@property</span>
+</span><span id="CObs-830"><a href="#CObs-830"><span class="linenos">830</span></a>    <span class="k">def</span> <span class="nf">imag</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-831"><a href="#CObs-831"><span class="linenos">831</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span>
+</span><span id="CObs-832"><a href="#CObs-832"><span class="linenos">832</span></a>
+</span><span id="CObs-833"><a href="#CObs-833"><span class="linenos">833</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="CObs-834"><a href="#CObs-834"><span class="linenos">834</span></a>        <span class="sd">&quot;&quot;&quot;Executes the gamma_method for the real and the imaginary part.&quot;&quot;&quot;</span>
+</span><span id="CObs-835"><a href="#CObs-835"><span class="linenos">835</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="CObs-836"><a href="#CObs-836"><span class="linenos">836</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="CObs-837"><a href="#CObs-837"><span class="linenos">837</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="CObs-838"><a href="#CObs-838"><span class="linenos">838</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="CObs-839"><a href="#CObs-839"><span class="linenos">839</span></a>
+</span><span id="CObs-840"><a href="#CObs-840"><span class="linenos">840</span></a>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-841"><a href="#CObs-841"><span class="linenos">841</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether both real and imaginary part are zero within machine precision.&quot;&quot;&quot;</span>
+</span><span id="CObs-842"><a href="#CObs-842"><span class="linenos">842</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="mf">0.0</span>
+</span><span id="CObs-843"><a href="#CObs-843"><span class="linenos">843</span></a>
+</span><span id="CObs-844"><a href="#CObs-844"><span class="linenos">844</span></a>    <span class="k">def</span> <span class="nf">conjugate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-845"><a href="#CObs-845"><span class="linenos">845</span></a>        <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="CObs-846"><a href="#CObs-846"><span class="linenos">846</span></a>
+</span><span id="CObs-847"><a href="#CObs-847"><span class="linenos">847</span></a>    <span class="k">def</span> <span class="fm">__add__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-848"><a href="#CObs-848"><span class="linenos">848</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="CObs-849"><a href="#CObs-849"><span class="linenos">849</span></a>            <span class="k">return</span> <span class="n">other</span> <span class="o">+</span> <span class="bp">self</span>
+</span><span id="CObs-850"><a href="#CObs-850"><span class="linenos">850</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="CObs-851"><a href="#CObs-851"><span class="linenos">851</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span>
+</span><span id="CObs-852"><a href="#CObs-852"><span class="linenos">852</span></a>                        <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="CObs-853"><a href="#CObs-853"><span class="linenos">853</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="CObs-854"><a href="#CObs-854"><span class="linenos">854</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="CObs-855"><a href="#CObs-855"><span class="linenos">855</span></a>
+</span><span id="CObs-856"><a href="#CObs-856"><span class="linenos">856</span></a>    <span class="k">def</span> <span class="fm">__radd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">y</span><span class="p">):</span>
+</span><span id="CObs-857"><a href="#CObs-857"><span class="linenos">857</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">+</span> <span class="n">y</span>
+</span><span id="CObs-858"><a href="#CObs-858"><span class="linenos">858</span></a>
+</span><span id="CObs-859"><a href="#CObs-859"><span class="linenos">859</span></a>    <span class="k">def</span> <span class="fm">__sub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-860"><a href="#CObs-860"><span class="linenos">860</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="CObs-861"><a href="#CObs-861"><span class="linenos">861</span></a>            <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="n">other</span> <span class="o">-</span> <span class="bp">self</span><span class="p">)</span>
+</span><span id="CObs-862"><a href="#CObs-862"><span class="linenos">862</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="CObs-863"><a href="#CObs-863"><span class="linenos">863</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="CObs-864"><a href="#CObs-864"><span class="linenos">864</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="CObs-865"><a href="#CObs-865"><span class="linenos">865</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="CObs-866"><a href="#CObs-866"><span class="linenos">866</span></a>
+</span><span id="CObs-867"><a href="#CObs-867"><span class="linenos">867</span></a>    <span class="k">def</span> <span class="fm">__rsub__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-868"><a href="#CObs-868"><span class="linenos">868</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="p">(</span><span class="bp">self</span> <span class="o">-</span> <span class="n">other</span><span class="p">)</span>
+</span><span id="CObs-869"><a href="#CObs-869"><span class="linenos">869</span></a>
+</span><span id="CObs-870"><a href="#CObs-870"><span class="linenos">870</span></a>    <span class="k">def</span> <span class="fm">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-871"><a href="#CObs-871"><span class="linenos">871</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="CObs-872"><a href="#CObs-872"><span class="linenos">872</span></a>            <span class="k">return</span> <span class="n">other</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="CObs-873"><a href="#CObs-873"><span class="linenos">873</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="CObs-874"><a href="#CObs-874"><span class="linenos">874</span></a>            <span class="k">if</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">]):</span>
+</span><span id="CObs-875"><a href="#CObs-875"><span class="linenos">875</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
+</span><span id="CObs-876"><a href="#CObs-876"><span class="linenos">876</span></a>                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
+</span><span id="CObs-877"><a href="#CObs-877"><span class="linenos">877</span></a>                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">]),</span>
+</span><span id="CObs-878"><a href="#CObs-878"><span class="linenos">878</span></a>                            <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">*</span> <span class="n">x</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span>
+</span><span id="CObs-879"><a href="#CObs-879"><span class="linenos">879</span></a>                                               <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">],</span>
+</span><span id="CObs-880"><a href="#CObs-880"><span class="linenos">880</span></a>                                               <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">value</span><span class="p">]))</span>
+</span><span id="CObs-881"><a href="#CObs-881"><span class="linenos">881</span></a>            <span class="k">elif</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="CObs-882"><a href="#CObs-882"><span class="linenos">882</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span>
+</span><span id="CObs-883"><a href="#CObs-883"><span class="linenos">883</span></a>                            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span><span id="CObs-884"><a href="#CObs-884"><span class="linenos">884</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="CObs-885"><a href="#CObs-885"><span class="linenos">885</span></a>                <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span>
+</span><span id="CObs-886"><a href="#CObs-886"><span class="linenos">886</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="CObs-887"><a href="#CObs-887"><span class="linenos">887</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="p">)</span>
+</span><span id="CObs-888"><a href="#CObs-888"><span class="linenos">888</span></a>
+</span><span id="CObs-889"><a href="#CObs-889"><span class="linenos">889</span></a>    <span class="k">def</span> <span class="fm">__rmul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-890"><a href="#CObs-890"><span class="linenos">890</span></a>        <span class="k">return</span> <span class="bp">self</span> <span class="o">*</span> <span class="n">other</span>
+</span><span id="CObs-891"><a href="#CObs-891"><span class="linenos">891</span></a>
+</span><span id="CObs-892"><a href="#CObs-892"><span class="linenos">892</span></a>    <span class="k">def</span> <span class="fm">__truediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-893"><a href="#CObs-893"><span class="linenos">893</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span>
+</span><span id="CObs-894"><a href="#CObs-894"><span class="linenos">894</span></a>            <span class="k">return</span> <span class="mi">1</span> <span class="o">/</span> <span class="p">(</span><span class="n">other</span> <span class="o">/</span> <span class="bp">self</span><span class="p">)</span>
+</span><span id="CObs-895"><a href="#CObs-895"><span class="linenos">895</span></a>        <span class="k">elif</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="CObs-896"><a href="#CObs-896"><span class="linenos">896</span></a>            <span class="n">r</span> <span class="o">=</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="CObs-897"><a href="#CObs-897"><span class="linenos">897</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
+</span><span id="CObs-898"><a href="#CObs-898"><span class="linenos">898</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="CObs-899"><a href="#CObs-899"><span class="linenos">899</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">/</span> <span class="n">other</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">/</span> <span class="n">other</span><span class="p">)</span>
+</span><span id="CObs-900"><a href="#CObs-900"><span class="linenos">900</span></a>
+</span><span id="CObs-901"><a href="#CObs-901"><span class="linenos">901</span></a>    <span class="k">def</span> <span class="fm">__rtruediv__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-902"><a href="#CObs-902"><span class="linenos">902</span></a>        <span class="n">r</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">**</span> <span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">**</span> <span class="mi">2</span>
+</span><span id="CObs-903"><a href="#CObs-903"><span class="linenos">903</span></a>        <span class="k">if</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;real&#39;</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">hasattr</span><span class="p">(</span><span class="n">other</span><span class="p">,</span> <span class="s1">&#39;imag&#39;</span><span class="p">):</span>
+</span><span id="CObs-904"><a href="#CObs-904"><span class="linenos">904</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">((</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
+</span><span id="CObs-905"><a href="#CObs-905"><span class="linenos">905</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="CObs-906"><a href="#CObs-906"><span class="linenos">906</span></a>            <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">*</span> <span class="n">other</span> <span class="o">/</span> <span class="n">r</span><span class="p">)</span>
+</span><span id="CObs-907"><a href="#CObs-907"><span class="linenos">907</span></a>
+</span><span id="CObs-908"><a href="#CObs-908"><span class="linenos">908</span></a>    <span class="k">def</span> <span class="fm">__abs__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-909"><a href="#CObs-909"><span class="linenos">909</span></a>        <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">**</span><span class="mi">2</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">**</span><span class="mi">2</span><span class="p">)</span>
+</span><span id="CObs-910"><a href="#CObs-910"><span class="linenos">910</span></a>
+</span><span id="CObs-911"><a href="#CObs-911"><span class="linenos">911</span></a>    <span class="k">def</span> <span class="fm">__pos__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-912"><a href="#CObs-912"><span class="linenos">912</span></a>        <span class="k">return</span> <span class="bp">self</span>
+</span><span id="CObs-913"><a href="#CObs-913"><span class="linenos">913</span></a>
+</span><span id="CObs-914"><a href="#CObs-914"><span class="linenos">914</span></a>    <span class="k">def</span> <span class="fm">__neg__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-915"><a href="#CObs-915"><span class="linenos">915</span></a>        <span class="k">return</span> <span class="o">-</span><span class="mi">1</span> <span class="o">*</span> <span class="bp">self</span>
+</span><span id="CObs-916"><a href="#CObs-916"><span class="linenos">916</span></a>
+</span><span id="CObs-917"><a href="#CObs-917"><span class="linenos">917</span></a>    <span class="k">def</span> <span class="fm">__eq__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
+</span><span id="CObs-918"><a href="#CObs-918"><span class="linenos">918</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">real</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="n">other</span><span class="o">.</span><span class="n">imag</span>
+</span><span id="CObs-919"><a href="#CObs-919"><span class="linenos">919</span></a>
+</span><span id="CObs-920"><a href="#CObs-920"><span class="linenos">920</span></a>    <span class="k">def</span> <span class="fm">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-921"><a href="#CObs-921"><span class="linenos">921</span></a>        <span class="k">return</span> <span class="s1">&#39;(&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">)</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">&gt;=</span> <span class="mf">0.0</span><span class="p">)</span> <span class="o">*</span> <span class="s1">&#39;+&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;j)&#39;</span>
+</span><span id="CObs-922"><a href="#CObs-922"><span class="linenos">922</span></a>
+</span><span id="CObs-923"><a href="#CObs-923"><span class="linenos">923</span></a>    <span class="k">def</span> <span class="fm">__repr__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs-924"><a href="#CObs-924"><span class="linenos">924</span></a>        <span class="k">return</span> <span class="s1">&#39;CObs[&#39;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;]&#39;</span>
+</span></pre></div>
 
         </details>
 
@@ -4346,11 +4349,11 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_real</span> <span class="o">=</span> <span class="n">real</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span> <span class="o">=</span> <span class="n">imag</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="CObs.__init__-820"><a href="#CObs.__init__-820"><span class="linenos">820</span></a>    <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">real</span><span class="p">,</span> <span class="n">imag</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
+</span><span id="CObs.__init__-821"><a href="#CObs.__init__-821"><span class="linenos">821</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_real</span> <span class="o">=</span> <span class="n">real</span>
+</span><span id="CObs.__init__-822"><a href="#CObs.__init__-822"><span class="linenos">822</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_imag</span> <span class="o">=</span> <span class="n">imag</span>
+</span><span id="CObs.__init__-823"><a href="#CObs.__init__-823"><span class="linenos">823</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="kc">None</span>
+</span></pre></div>
 
         </details>
 
@@ -4397,13 +4400,13 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Executes the gamma_method for the real and the imaginary part.&quot;&quot;&quot;</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
-            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="CObs.gamma_method-833"><a href="#CObs.gamma_method-833"><span class="linenos">833</span></a>    <span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="CObs.gamma_method-834"><a href="#CObs.gamma_method-834"><span class="linenos">834</span></a>        <span class="sd">&quot;&quot;&quot;Executes the gamma_method for the real and the imaginary part.&quot;&quot;&quot;</span>
+</span><span id="CObs.gamma_method-835"><a href="#CObs.gamma_method-835"><span class="linenos">835</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="CObs.gamma_method-836"><a href="#CObs.gamma_method-836"><span class="linenos">836</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="CObs.gamma_method-837"><a href="#CObs.gamma_method-837"><span class="linenos">837</span></a>        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">,</span> <span class="n">Obs</span><span class="p">):</span>
+</span><span id="CObs.gamma_method-838"><a href="#CObs.gamma_method-838"><span class="linenos">838</span></a>            <span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="o">.</span><span class="n">gamma_method</span><span class="p">(</span><span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4422,10 +4425,10 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Checks whether both real and imaginary part are zero within machine precision.&quot;&quot;&quot;</span>
-        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="mf">0.0</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="CObs.is_zero-840"><a href="#CObs.is_zero-840"><span class="linenos">840</span></a>    <span class="k">def</span> <span class="nf">is_zero</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs.is_zero-841"><a href="#CObs.is_zero-841"><span class="linenos">841</span></a>        <span class="sd">&quot;&quot;&quot;Checks whether both real and imaginary part are zero within machine precision.&quot;&quot;&quot;</span>
+</span><span id="CObs.is_zero-842"><a href="#CObs.is_zero-842"><span class="linenos">842</span></a>        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">real</span> <span class="o">==</span> <span class="mf">0.0</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">imag</span> <span class="o">==</span> <span class="mf">0.0</span>
+</span></pre></div>
 
         </details>
 
@@ -4444,9 +4447,9 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span>    <span class="k">def</span> <span class="nf">conjugate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="CObs.conjugate-844"><a href="#CObs.conjugate-844"><span class="linenos">844</span></a>    <span class="k">def</span> <span class="nf">conjugate</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+</span><span id="CObs.conjugate-845"><a href="#CObs.conjugate-845"><span class="linenos">845</span></a>        <span class="k">return</span> <span class="n">CObs</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">real</span><span class="p">,</span> <span class="o">-</span><span class="bp">self</span><span class="o">.</span><span class="n">imag</span><span class="p">)</span>
+</span></pre></div>
 
         </details>
 
@@ -4464,185 +4467,185 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">derived_observable</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Construct a derived Obs according to func(data, **kwargs) using automatic differentiation.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    func : object</span>
-<span class="sd">        arbitrary function of the form func(data, **kwargs). For the</span>
-<span class="sd">        automatic differentiation to work, all numpy functions have to have</span>
-<span class="sd">        the autograd wrapper (use &#39;import autograd.numpy as anp&#39;).</span>
-<span class="sd">    data : list</span>
-<span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
-<span class="sd">    num_grad : bool</span>
-<span class="sd">        if True, numerical derivatives are used instead of autograd</span>
-<span class="sd">        (default False). To control the numerical differentiation the</span>
-<span class="sd">        kwargs of numdifftools.step_generators.MaxStepGenerator</span>
-<span class="sd">        can be used.</span>
-<span class="sd">    man_grad : list</span>
-<span class="sd">        manually supply a list or an array which contains the jacobian</span>
-<span class="sd">        of func. Use cautiously, supplying the wrong derivative will</span>
-<span class="sd">        not be intercepted.</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    For simple mathematical operations it can be practical to use anonymous</span>
-<span class="sd">    functions. For the ratio of two observables one can e.g. use</span>
-
-<span class="sd">    new_obs = derived_observable(lambda x: x[0] / x[1], [obs1, obs2])</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
-    <span class="n">raveled_data</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">ravel</span><span class="p">()</span>
-
-    <span class="c1"># Workaround for matrix operations containing non Obs data</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">):</span>
-        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)):</span>
-            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
-                <span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">cov_Obs</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">0.0</span><span class="p">,</span> <span class="s2">&quot;###dummy_covobs###&quot;</span><span class="p">)</span>
-
-    <span class="n">allcov</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">:</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">allcov</span><span class="p">:</span>
-                <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">):</span>
-                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Inconsistent covariance matrices for </span><span class="si">%s</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
-            <span class="k">else</span><span class="p">:</span>
-                <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span>
-
-    <span class="n">n_obs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)</span>
-    <span class="n">new_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
-    <span class="n">new_cov_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
-    <span class="n">new_sample_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_cov_names</span><span class="p">))</span>
-
-    <span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">}</span>
-    <span class="n">reweighted</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span>
-
-    <span class="k">if</span> <span class="n">data</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data</span><span class="p">])</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">data</span><span class="p">)</span>
-
-    <span class="n">new_values</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="n">multi</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">new_values</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">))</span>
-
-    <span class="n">new_r_values</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">new_idl_d</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
-        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n_obs</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">):</span>
-            <span class="n">tmp_values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">item</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-            <span class="n">tmp_idl</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">tmp_idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_idl</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
-        <span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-            <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="p">[</span><span class="o">*</span><span class="n">idl</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]]])))</span>
-
-    <span class="k">if</span> <span class="s1">&#39;man_grad&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
-        <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;man_grad&#39;</span><span class="p">))</span>
-        <span class="k">if</span> <span class="n">new_values</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">data</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">deriv</span><span class="o">.</span><span class="n">shape</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Manual derivative does not have correct shape.&#39;</span><span class="p">)</span>
-    <span class="k">elif</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;num_grad&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Multi mode currently not supported for numerical derivative&#39;</span><span class="p">)</span>
-        <span class="n">options</span> <span class="o">=</span> <span class="p">{</span>
-            <span class="s1">&#39;base_step&#39;</span><span class="p">:</span> <span class="mf">0.1</span><span class="p">,</span>
-            <span class="s1">&#39;step_ratio&#39;</span><span class="p">:</span> <span class="mf">2.5</span><span class="p">}</span>
-        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
-            <span class="n">kwarg</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
-            <span class="k">if</span> <span class="n">kwarg</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-                <span class="n">options</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">kwarg</span>
-        <span class="n">tmp_df</span> <span class="o">=</span> <span class="n">nd</span><span class="o">.</span><span class="n">Gradient</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="o">**</span><span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> <span class="k">if</span> <span class="n">v</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">})(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">size</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-            <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span><span class="p">])</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">deriv</span> <span class="o">=</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">deriv</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
-
-    <span class="n">final_result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">new_values</span><span class="o">.</span><span class="n">shape</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-
-        <span class="k">class</span> <span class="nc">_Zero_grad</span><span class="p">():</span>
-            <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">):</span>
-                <span class="bp">self</span><span class="o">.</span><span class="n">grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
-
-        <span class="n">new_covobs_lengths</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[[(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
-        <span class="n">d_extracted</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">g_extracted</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
-            <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
-                <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)),</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]),</span> <span class="n">o</span><span class="o">.</span><span class="n">shape</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">ens_length</span><span class="p">),</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">ens_length</span><span class="p">,</span> <span class="p">)))</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
-            <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
-            <span class="n">zero_grad</span> <span class="o">=</span> <span class="n">_Zero_grad</span><span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
-                <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">zero_grad</span><span class="p">)</span><span class="o">.</span><span class="n">grad</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="mi">1</span><span class="p">)))</span>
-
-    <span class="k">for</span> <span class="n">i_val</span><span class="p">,</span> <span class="n">new_val</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">new_values</span><span class="p">):</span>
-        <span class="n">new_deltas</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="n">new_grad</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
-                <span class="n">ens_length</span> <span class="o">=</span> <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
-                <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)</span>
-                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
-                    <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
-            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
-                <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
-                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
-                    <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="k">for</span> <span class="n">j_obs</span><span class="p">,</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
-                <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-                    <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
-                        <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_grad</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">obs</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span>
-                    <span class="k">else</span><span class="p">:</span>
-                        <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-
-        <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_grad</span><span class="p">}</span>
-
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="n">new_deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The same name has been used for deltas and covobs!&#39;</span><span class="p">)</span>
-        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">new_means</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">new_names_obs</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
-                <span class="k">if</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-                    <span class="n">filtered_deltas</span><span class="p">,</span> <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">_filter_zeroes</span><span class="p">(</span><span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">filtered_deltas</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-                    <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
-
-                <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_deltas</span><span class="p">)</span>
-                <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_idl_d</span><span class="p">)</span>
-                <span class="n">new_means</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i_val</span><span class="p">])</span>
-                <span class="n">new_names_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="n">new_names_obs</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="n">new_means</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
-            <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">new_val</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">is_merged</span>
-        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">reweighted</span>
-
-    <span class="k">if</span> <span class="n">multi</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-        <span class="n">final_result</span> <span class="o">=</span> <span class="n">final_result</span><span class="o">.</span><span class="n">item</span><span class="p">()</span>
-
-    <span class="k">return</span> <span class="n">final_result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="derived_observable-1032"><a href="#derived_observable-1032"><span class="linenos">1032</span></a><span class="k">def</span> <span class="nf">derived_observable</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">array_mode</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="derived_observable-1033"><a href="#derived_observable-1033"><span class="linenos">1033</span></a>    <span class="sd">&quot;&quot;&quot;Construct a derived Obs according to func(data, **kwargs) using automatic differentiation.</span>
+</span><span id="derived_observable-1034"><a href="#derived_observable-1034"><span class="linenos">1034</span></a>
+</span><span id="derived_observable-1035"><a href="#derived_observable-1035"><span class="linenos">1035</span></a><span class="sd">    Parameters</span>
+</span><span id="derived_observable-1036"><a href="#derived_observable-1036"><span class="linenos">1036</span></a><span class="sd">    ----------</span>
+</span><span id="derived_observable-1037"><a href="#derived_observable-1037"><span class="linenos">1037</span></a><span class="sd">    func : object</span>
+</span><span id="derived_observable-1038"><a href="#derived_observable-1038"><span class="linenos">1038</span></a><span class="sd">        arbitrary function of the form func(data, **kwargs). For the</span>
+</span><span id="derived_observable-1039"><a href="#derived_observable-1039"><span class="linenos">1039</span></a><span class="sd">        automatic differentiation to work, all numpy functions have to have</span>
+</span><span id="derived_observable-1040"><a href="#derived_observable-1040"><span class="linenos">1040</span></a><span class="sd">        the autograd wrapper (use &#39;import autograd.numpy as anp&#39;).</span>
+</span><span id="derived_observable-1041"><a href="#derived_observable-1041"><span class="linenos">1041</span></a><span class="sd">    data : list</span>
+</span><span id="derived_observable-1042"><a href="#derived_observable-1042"><span class="linenos">1042</span></a><span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
+</span><span id="derived_observable-1043"><a href="#derived_observable-1043"><span class="linenos">1043</span></a><span class="sd">    num_grad : bool</span>
+</span><span id="derived_observable-1044"><a href="#derived_observable-1044"><span class="linenos">1044</span></a><span class="sd">        if True, numerical derivatives are used instead of autograd</span>
+</span><span id="derived_observable-1045"><a href="#derived_observable-1045"><span class="linenos">1045</span></a><span class="sd">        (default False). To control the numerical differentiation the</span>
+</span><span id="derived_observable-1046"><a href="#derived_observable-1046"><span class="linenos">1046</span></a><span class="sd">        kwargs of numdifftools.step_generators.MaxStepGenerator</span>
+</span><span id="derived_observable-1047"><a href="#derived_observable-1047"><span class="linenos">1047</span></a><span class="sd">        can be used.</span>
+</span><span id="derived_observable-1048"><a href="#derived_observable-1048"><span class="linenos">1048</span></a><span class="sd">    man_grad : list</span>
+</span><span id="derived_observable-1049"><a href="#derived_observable-1049"><span class="linenos">1049</span></a><span class="sd">        manually supply a list or an array which contains the jacobian</span>
+</span><span id="derived_observable-1050"><a href="#derived_observable-1050"><span class="linenos">1050</span></a><span class="sd">        of func. Use cautiously, supplying the wrong derivative will</span>
+</span><span id="derived_observable-1051"><a href="#derived_observable-1051"><span class="linenos">1051</span></a><span class="sd">        not be intercepted.</span>
+</span><span id="derived_observable-1052"><a href="#derived_observable-1052"><span class="linenos">1052</span></a>
+</span><span id="derived_observable-1053"><a href="#derived_observable-1053"><span class="linenos">1053</span></a><span class="sd">    Notes</span>
+</span><span id="derived_observable-1054"><a href="#derived_observable-1054"><span class="linenos">1054</span></a><span class="sd">    -----</span>
+</span><span id="derived_observable-1055"><a href="#derived_observable-1055"><span class="linenos">1055</span></a><span class="sd">    For simple mathematical operations it can be practical to use anonymous</span>
+</span><span id="derived_observable-1056"><a href="#derived_observable-1056"><span class="linenos">1056</span></a><span class="sd">    functions. For the ratio of two observables one can e.g. use</span>
+</span><span id="derived_observable-1057"><a href="#derived_observable-1057"><span class="linenos">1057</span></a>
+</span><span id="derived_observable-1058"><a href="#derived_observable-1058"><span class="linenos">1058</span></a><span class="sd">    new_obs = derived_observable(lambda x: x[0] / x[1], [obs1, obs2])</span>
+</span><span id="derived_observable-1059"><a href="#derived_observable-1059"><span class="linenos">1059</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="derived_observable-1060"><a href="#derived_observable-1060"><span class="linenos">1060</span></a>
+</span><span id="derived_observable-1061"><a href="#derived_observable-1061"><span class="linenos">1061</span></a>    <span class="n">data</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="derived_observable-1062"><a href="#derived_observable-1062"><span class="linenos">1062</span></a>    <span class="n">raveled_data</span> <span class="o">=</span> <span class="n">data</span><span class="o">.</span><span class="n">ravel</span><span class="p">()</span>
+</span><span id="derived_observable-1063"><a href="#derived_observable-1063"><span class="linenos">1063</span></a>
+</span><span id="derived_observable-1064"><a href="#derived_observable-1064"><span class="linenos">1064</span></a>    <span class="c1"># Workaround for matrix operations containing non Obs data</span>
+</span><span id="derived_observable-1065"><a href="#derived_observable-1065"><span class="linenos">1065</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="nb">all</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">Obs</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">):</span>
+</span><span id="derived_observable-1066"><a href="#derived_observable-1066"><span class="linenos">1066</span></a>        <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)):</span>
+</span><span id="derived_observable-1067"><a href="#derived_observable-1067"><span class="linenos">1067</span></a>            <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+</span><span id="derived_observable-1068"><a href="#derived_observable-1068"><span class="linenos">1068</span></a>                <span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">cov_Obs</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">0.0</span><span class="p">,</span> <span class="s2">&quot;###dummy_covobs###&quot;</span><span class="p">)</span>
+</span><span id="derived_observable-1069"><a href="#derived_observable-1069"><span class="linenos">1069</span></a>
+</span><span id="derived_observable-1070"><a href="#derived_observable-1070"><span class="linenos">1070</span></a>    <span class="n">allcov</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="derived_observable-1071"><a href="#derived_observable-1071"><span class="linenos">1071</span></a>    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">:</span>
+</span><span id="derived_observable-1072"><a href="#derived_observable-1072"><span class="linenos">1072</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="derived_observable-1073"><a href="#derived_observable-1073"><span class="linenos">1073</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">allcov</span><span class="p">:</span>
+</span><span id="derived_observable-1074"><a href="#derived_observable-1074"><span class="linenos">1074</span></a>                <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">allclose</span><span class="p">(</span><span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span><span class="p">):</span>
+</span><span id="derived_observable-1075"><a href="#derived_observable-1075"><span class="linenos">1075</span></a>                    <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Inconsistent covariance matrices for </span><span class="si">%s</span><span class="s1">!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">name</span><span class="p">))</span>
+</span><span id="derived_observable-1076"><a href="#derived_observable-1076"><span class="linenos">1076</span></a>            <span class="k">else</span><span class="p">:</span>
+</span><span id="derived_observable-1077"><a href="#derived_observable-1077"><span class="linenos">1077</span></a>                <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">cov</span>
+</span><span id="derived_observable-1078"><a href="#derived_observable-1078"><span class="linenos">1078</span></a>
+</span><span id="derived_observable-1079"><a href="#derived_observable-1079"><span class="linenos">1079</span></a>    <span class="n">n_obs</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">)</span>
+</span><span id="derived_observable-1080"><a href="#derived_observable-1080"><span class="linenos">1080</span></a>    <span class="n">new_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
+</span><span id="derived_observable-1081"><a href="#derived_observable-1081"><span class="linenos">1081</span></a>    <span class="n">new_cov_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
+</span><span id="derived_observable-1082"><a href="#derived_observable-1082"><span class="linenos">1082</span></a>    <span class="n">new_sample_names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">new_names</span><span class="p">)</span> <span class="o">-</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_cov_names</span><span class="p">))</span>
+</span><span id="derived_observable-1083"><a href="#derived_observable-1083"><span class="linenos">1083</span></a>
+</span><span id="derived_observable-1084"><a href="#derived_observable-1084"><span class="linenos">1084</span></a>    <span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">}</span>
+</span><span id="derived_observable-1085"><a href="#derived_observable-1085"><span class="linenos">1085</span></a>    <span class="n">reweighted</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="nb">filter</span><span class="p">(</span><span class="k">lambda</span> <span class="n">o</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">,</span> <span class="n">raveled_data</span><span class="p">)))</span> <span class="o">&gt;</span> <span class="mi">0</span>
+</span><span id="derived_observable-1086"><a href="#derived_observable-1086"><span class="linenos">1086</span></a>
+</span><span id="derived_observable-1087"><a href="#derived_observable-1087"><span class="linenos">1087</span></a>    <span class="k">if</span> <span class="n">data</span><span class="o">.</span><span class="n">ndim</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="derived_observable-1088"><a href="#derived_observable-1088"><span class="linenos">1088</span></a>        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">value</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">data</span><span class="p">])</span>
+</span><span id="derived_observable-1089"><a href="#derived_observable-1089"><span class="linenos">1089</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="derived_observable-1090"><a href="#derived_observable-1090"><span class="linenos">1090</span></a>        <span class="n">values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">vectorize</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">:</span> <span class="n">x</span><span class="o">.</span><span class="n">value</span><span class="p">)(</span><span class="n">data</span><span class="p">)</span>
+</span><span id="derived_observable-1091"><a href="#derived_observable-1091"><span class="linenos">1091</span></a>
+</span><span id="derived_observable-1092"><a href="#derived_observable-1092"><span class="linenos">1092</span></a>    <span class="n">new_values</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="derived_observable-1093"><a href="#derived_observable-1093"><span class="linenos">1093</span></a>
+</span><span id="derived_observable-1094"><a href="#derived_observable-1094"><span class="linenos">1094</span></a>    <span class="n">multi</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">new_values</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">))</span>
+</span><span id="derived_observable-1095"><a href="#derived_observable-1095"><span class="linenos">1095</span></a>
+</span><span id="derived_observable-1096"><a href="#derived_observable-1096"><span class="linenos">1096</span></a>    <span class="n">new_r_values</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="derived_observable-1097"><a href="#derived_observable-1097"><span class="linenos">1097</span></a>    <span class="n">new_idl_d</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="derived_observable-1098"><a href="#derived_observable-1098"><span class="linenos">1098</span></a>    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
+</span><span id="derived_observable-1099"><a href="#derived_observable-1099"><span class="linenos">1099</span></a>        <span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="derived_observable-1100"><a href="#derived_observable-1100"><span class="linenos">1100</span></a>        <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">n_obs</span><span class="p">)</span>
+</span><span id="derived_observable-1101"><a href="#derived_observable-1101"><span class="linenos">1101</span></a>        <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">item</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">raveled_data</span><span class="p">):</span>
+</span><span id="derived_observable-1102"><a href="#derived_observable-1102"><span class="linenos">1102</span></a>            <span class="n">tmp_values</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">item</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="derived_observable-1103"><a href="#derived_observable-1103"><span class="linenos">1103</span></a>            <span class="n">tmp_idl</span> <span class="o">=</span> <span class="n">item</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="derived_observable-1104"><a href="#derived_observable-1104"><span class="linenos">1104</span></a>            <span class="k">if</span> <span class="n">tmp_idl</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="derived_observable-1105"><a href="#derived_observable-1105"><span class="linenos">1105</span></a>                <span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">tmp_idl</span><span class="p">)</span>
+</span><span id="derived_observable-1106"><a href="#derived_observable-1106"><span class="linenos">1106</span></a>        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="derived_observable-1107"><a href="#derived_observable-1107"><span class="linenos">1107</span></a>            <span class="n">tmp_values</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">)</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">data</span><span class="o">.</span><span class="n">shape</span><span class="p">)</span>
+</span><span id="derived_observable-1108"><a href="#derived_observable-1108"><span class="linenos">1108</span></a>        <span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">func</span><span class="p">(</span><span class="n">tmp_values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="derived_observable-1109"><a href="#derived_observable-1109"><span class="linenos">1109</span></a>        <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_merge_idx</span><span class="p">(</span><span class="n">idl</span><span class="p">)</span>
+</span><span id="derived_observable-1110"><a href="#derived_observable-1110"><span class="linenos">1110</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="derived_observable-1111"><a href="#derived_observable-1111"><span class="linenos">1111</span></a>            <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">(</span><span class="mi">1</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span> <span class="k">for</span> <span class="n">idx</span> <span class="ow">in</span> <span class="p">[</span><span class="o">*</span><span class="n">idl</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]]])))</span>
+</span><span id="derived_observable-1112"><a href="#derived_observable-1112"><span class="linenos">1112</span></a>
+</span><span id="derived_observable-1113"><a href="#derived_observable-1113"><span class="linenos">1113</span></a>    <span class="k">if</span> <span class="s1">&#39;man_grad&#39;</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
+</span><span id="derived_observable-1114"><a href="#derived_observable-1114"><span class="linenos">1114</span></a>        <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;man_grad&#39;</span><span class="p">))</span>
+</span><span id="derived_observable-1115"><a href="#derived_observable-1115"><span class="linenos">1115</span></a>        <span class="k">if</span> <span class="n">new_values</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">data</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">deriv</span><span class="o">.</span><span class="n">shape</span><span class="p">:</span>
+</span><span id="derived_observable-1116"><a href="#derived_observable-1116"><span class="linenos">1116</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Manual derivative does not have correct shape.&#39;</span><span class="p">)</span>
+</span><span id="derived_observable-1117"><a href="#derived_observable-1117"><span class="linenos">1117</span></a>    <span class="k">elif</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;num_grad&#39;</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="derived_observable-1118"><a href="#derived_observable-1118"><span class="linenos">1118</span></a>        <span class="k">if</span> <span class="n">multi</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="derived_observable-1119"><a href="#derived_observable-1119"><span class="linenos">1119</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Multi mode currently not supported for numerical derivative&#39;</span><span class="p">)</span>
+</span><span id="derived_observable-1120"><a href="#derived_observable-1120"><span class="linenos">1120</span></a>        <span class="n">options</span> <span class="o">=</span> <span class="p">{</span>
+</span><span id="derived_observable-1121"><a href="#derived_observable-1121"><span class="linenos">1121</span></a>            <span class="s1">&#39;base_step&#39;</span><span class="p">:</span> <span class="mf">0.1</span><span class="p">,</span>
+</span><span id="derived_observable-1122"><a href="#derived_observable-1122"><span class="linenos">1122</span></a>            <span class="s1">&#39;step_ratio&#39;</span><span class="p">:</span> <span class="mf">2.5</span><span class="p">}</span>
+</span><span id="derived_observable-1123"><a href="#derived_observable-1123"><span class="linenos">1123</span></a>        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+</span><span id="derived_observable-1124"><a href="#derived_observable-1124"><span class="linenos">1124</span></a>            <span class="n">kwarg</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+</span><span id="derived_observable-1125"><a href="#derived_observable-1125"><span class="linenos">1125</span></a>            <span class="k">if</span> <span class="n">kwarg</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+</span><span id="derived_observable-1126"><a href="#derived_observable-1126"><span class="linenos">1126</span></a>                <span class="n">options</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">kwarg</span>
+</span><span id="derived_observable-1127"><a href="#derived_observable-1127"><span class="linenos">1127</span></a>        <span class="n">tmp_df</span> <span class="o">=</span> <span class="n">nd</span><span class="o">.</span><span class="n">Gradient</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">order</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="o">**</span><span class="p">{</span><span class="n">k</span><span class="p">:</span> <span class="n">v</span> <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">options</span><span class="o">.</span><span class="n">items</span><span class="p">()</span> <span class="k">if</span> <span class="n">v</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">})(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="derived_observable-1128"><a href="#derived_observable-1128"><span class="linenos">1128</span></a>        <span class="k">if</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">size</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="derived_observable-1129"><a href="#derived_observable-1129"><span class="linenos">1129</span></a>            <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span><span class="p">])</span>
+</span><span id="derived_observable-1130"><a href="#derived_observable-1130"><span class="linenos">1130</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="derived_observable-1131"><a href="#derived_observable-1131"><span class="linenos">1131</span></a>            <span class="n">deriv</span> <span class="o">=</span> <span class="n">tmp_df</span><span class="o">.</span><span class="n">real</span>
+</span><span id="derived_observable-1132"><a href="#derived_observable-1132"><span class="linenos">1132</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="derived_observable-1133"><a href="#derived_observable-1133"><span class="linenos">1133</span></a>        <span class="n">deriv</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">values</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+</span><span id="derived_observable-1134"><a href="#derived_observable-1134"><span class="linenos">1134</span></a>
+</span><span id="derived_observable-1135"><a href="#derived_observable-1135"><span class="linenos">1135</span></a>    <span class="n">final_result</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">new_values</span><span class="o">.</span><span class="n">shape</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+</span><span id="derived_observable-1136"><a href="#derived_observable-1136"><span class="linenos">1136</span></a>
+</span><span id="derived_observable-1137"><a href="#derived_observable-1137"><span class="linenos">1137</span></a>    <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="derived_observable-1138"><a href="#derived_observable-1138"><span class="linenos">1138</span></a>
+</span><span id="derived_observable-1139"><a href="#derived_observable-1139"><span class="linenos">1139</span></a>        <span class="k">class</span> <span class="nc">_Zero_grad</span><span class="p">():</span>
+</span><span id="derived_observable-1140"><a href="#derived_observable-1140"><span class="linenos">1140</span></a>            <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">N</span><span class="p">):</span>
+</span><span id="derived_observable-1141"><a href="#derived_observable-1141"><span class="linenos">1141</span></a>                <span class="bp">self</span><span class="o">.</span><span class="n">grad</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">N</span><span class="p">,</span> <span class="mi">1</span><span class="p">))</span>
+</span><span id="derived_observable-1142"><a href="#derived_observable-1142"><span class="linenos">1142</span></a>
+</span><span id="derived_observable-1143"><a href="#derived_observable-1143"><span class="linenos">1143</span></a>        <span class="n">new_covobs_lengths</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="nb">set</span><span class="p">([</span><span class="n">y</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="p">[[(</span><span class="n">n</span><span class="p">,</span> <span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">n</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">)</span> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">]</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">raveled_data</span><span class="p">]</span> <span class="k">for</span> <span class="n">y</span> <span class="ow">in</span> <span class="n">x</span><span class="p">]))</span>
+</span><span id="derived_observable-1144"><a href="#derived_observable-1144"><span class="linenos">1144</span></a>        <span class="n">d_extracted</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="derived_observable-1145"><a href="#derived_observable-1145"><span class="linenos">1145</span></a>        <span class="n">g_extracted</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="derived_observable-1146"><a href="#derived_observable-1146"><span class="linenos">1146</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
+</span><span id="derived_observable-1147"><a href="#derived_observable-1147"><span class="linenos">1147</span></a>            <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="derived_observable-1148"><a href="#derived_observable-1148"><span class="linenos">1148</span></a>            <span class="n">ens_length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="derived_observable-1149"><a href="#derived_observable-1149"><span class="linenos">1149</span></a>            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+</span><span id="derived_observable-1150"><a href="#derived_observable-1150"><span class="linenos">1150</span></a>                <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)),</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]),</span> <span class="n">o</span><span class="o">.</span><span class="n">shape</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">ens_length</span><span class="p">),</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">ens_length</span><span class="p">,</span> <span class="p">)))</span>
+</span><span id="derived_observable-1151"><a href="#derived_observable-1151"><span class="linenos">1151</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
+</span><span id="derived_observable-1152"><a href="#derived_observable-1152"><span class="linenos">1152</span></a>            <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="derived_observable-1153"><a href="#derived_observable-1153"><span class="linenos">1153</span></a>            <span class="n">zero_grad</span> <span class="o">=</span> <span class="n">_Zero_grad</span><span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="derived_observable-1154"><a href="#derived_observable-1154"><span class="linenos">1154</span></a>            <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+</span><span id="derived_observable-1155"><a href="#derived_observable-1155"><span class="linenos">1155</span></a>                <span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="n">zero_grad</span><span class="p">)</span><span class="o">.</span><span class="n">grad</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">prod</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span><span class="p">))])</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">dat</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="p">(</span><span class="n">new_covobs_lengths</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="mi">1</span><span class="p">)))</span>
+</span><span id="derived_observable-1156"><a href="#derived_observable-1156"><span class="linenos">1156</span></a>
+</span><span id="derived_observable-1157"><a href="#derived_observable-1157"><span class="linenos">1157</span></a>    <span class="k">for</span> <span class="n">i_val</span><span class="p">,</span> <span class="n">new_val</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">new_values</span><span class="p">):</span>
+</span><span id="derived_observable-1158"><a href="#derived_observable-1158"><span class="linenos">1158</span></a>        <span class="n">new_deltas</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="derived_observable-1159"><a href="#derived_observable-1159"><span class="linenos">1159</span></a>        <span class="n">new_grad</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="derived_observable-1160"><a href="#derived_observable-1160"><span class="linenos">1160</span></a>        <span class="k">if</span> <span class="n">array_mode</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="derived_observable-1161"><a href="#derived_observable-1161"><span class="linenos">1161</span></a>            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_sample_names</span><span class="p">:</span>
+</span><span id="derived_observable-1162"><a href="#derived_observable-1162"><span class="linenos">1162</span></a>                <span class="n">ens_length</span> <span class="o">=</span> <span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+</span><span id="derived_observable-1163"><a href="#derived_observable-1163"><span class="linenos">1163</span></a>                <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">ens_length</span><span class="p">)</span>
+</span><span id="derived_observable-1164"><a href="#derived_observable-1164"><span class="linenos">1164</span></a>                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">d_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
+</span><span id="derived_observable-1165"><a href="#derived_observable-1165"><span class="linenos">1165</span></a>                    <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
+</span><span id="derived_observable-1166"><a href="#derived_observable-1166"><span class="linenos">1166</span></a>            <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_cov_names</span><span class="p">:</span>
+</span><span id="derived_observable-1167"><a href="#derived_observable-1167"><span class="linenos">1167</span></a>                <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span>
+</span><span id="derived_observable-1168"><a href="#derived_observable-1168"><span class="linenos">1168</span></a>                <span class="k">for</span> <span class="n">i_dat</span><span class="p">,</span> <span class="n">dat</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">g_extracted</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
+</span><span id="derived_observable-1169"><a href="#derived_observable-1169"><span class="linenos">1169</span></a>                    <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+=</span> <span class="n">np</span><span class="o">.</span><span class="n">tensordot</span><span class="p">(</span><span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="p">(</span><span class="n">i_dat</span><span class="p">,</span> <span class="p">)],</span> <span class="n">dat</span><span class="p">)</span>
+</span><span id="derived_observable-1170"><a href="#derived_observable-1170"><span class="linenos">1170</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="derived_observable-1171"><a href="#derived_observable-1171"><span class="linenos">1171</span></a>            <span class="k">for</span> <span class="n">j_obs</span><span class="p">,</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">np</span><span class="o">.</span><span class="n">ndenumerate</span><span class="p">(</span><span class="n">data</span><span class="p">):</span>
+</span><span id="derived_observable-1172"><a href="#derived_observable-1172"><span class="linenos">1172</span></a>                <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="derived_observable-1173"><a href="#derived_observable-1173"><span class="linenos">1173</span></a>                    <span class="k">if</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">cov_names</span><span class="p">:</span>
+</span><span id="derived_observable-1174"><a href="#derived_observable-1174"><span class="linenos">1174</span></a>                        <span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_grad</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">obs</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">grad</span>
+</span><span id="derived_observable-1175"><a href="#derived_observable-1175"><span class="linenos">1175</span></a>                    <span class="k">else</span><span class="p">:</span>
+</span><span id="derived_observable-1176"><a href="#derived_observable-1176"><span class="linenos">1176</span></a>                        <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">deriv</span><span class="p">[</span><span class="n">i_val</span> <span class="o">+</span> <span class="n">j_obs</span><span class="p">]</span> <span class="o">*</span> <span class="n">_expand_deltas_for_merge</span><span class="p">(</span><span class="n">obs</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="derived_observable-1177"><a href="#derived_observable-1177"><span class="linenos">1177</span></a>
+</span><span id="derived_observable-1178"><a href="#derived_observable-1178"><span class="linenos">1178</span></a>        <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_grad</span><span class="p">}</span>
+</span><span id="derived_observable-1179"><a href="#derived_observable-1179"><span class="linenos">1179</span></a>
+</span><span id="derived_observable-1180"><a href="#derived_observable-1180"><span class="linenos">1180</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="n">new_deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
+</span><span id="derived_observable-1181"><a href="#derived_observable-1181"><span class="linenos">1181</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;The same name has been used for deltas and covobs!&#39;</span><span class="p">)</span>
+</span><span id="derived_observable-1182"><a href="#derived_observable-1182"><span class="linenos">1182</span></a>        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="derived_observable-1183"><a href="#derived_observable-1183"><span class="linenos">1183</span></a>        <span class="n">new_means</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="derived_observable-1184"><a href="#derived_observable-1184"><span class="linenos">1184</span></a>        <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="derived_observable-1185"><a href="#derived_observable-1185"><span class="linenos">1185</span></a>        <span class="n">new_names_obs</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="derived_observable-1186"><a href="#derived_observable-1186"><span class="linenos">1186</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_names</span><span class="p">:</span>
+</span><span id="derived_observable-1187"><a href="#derived_observable-1187"><span class="linenos">1187</span></a>            <span class="k">if</span> <span class="n">name</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
+</span><span id="derived_observable-1188"><a href="#derived_observable-1188"><span class="linenos">1188</span></a>                <span class="k">if</span> <span class="n">is_merged</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="derived_observable-1189"><a href="#derived_observable-1189"><span class="linenos">1189</span></a>                    <span class="n">filtered_deltas</span><span class="p">,</span> <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">_filter_zeroes</span><span class="p">(</span><span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="derived_observable-1190"><a href="#derived_observable-1190"><span class="linenos">1190</span></a>                <span class="k">else</span><span class="p">:</span>
+</span><span id="derived_observable-1191"><a href="#derived_observable-1191"><span class="linenos">1191</span></a>                    <span class="n">filtered_deltas</span> <span class="o">=</span> <span class="n">new_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="derived_observable-1192"><a href="#derived_observable-1192"><span class="linenos">1192</span></a>                    <span class="n">filtered_idl_d</span> <span class="o">=</span> <span class="n">new_idl_d</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
+</span><span id="derived_observable-1193"><a href="#derived_observable-1193"><span class="linenos">1193</span></a>
+</span><span id="derived_observable-1194"><a href="#derived_observable-1194"><span class="linenos">1194</span></a>                <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_deltas</span><span class="p">)</span>
+</span><span id="derived_observable-1195"><a href="#derived_observable-1195"><span class="linenos">1195</span></a>                <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">filtered_idl_d</span><span class="p">)</span>
+</span><span id="derived_observable-1196"><a href="#derived_observable-1196"><span class="linenos">1196</span></a>                <span class="n">new_means</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">new_r_values</span><span class="p">[</span><span class="n">name</span><span class="p">][</span><span class="n">i_val</span><span class="p">])</span>
+</span><span id="derived_observable-1197"><a href="#derived_observable-1197"><span class="linenos">1197</span></a>                <span class="n">new_names_obs</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="derived_observable-1198"><a href="#derived_observable-1198"><span class="linenos">1198</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="n">new_names_obs</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="n">new_means</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
+</span><span id="derived_observable-1199"><a href="#derived_observable-1199"><span class="linenos">1199</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
+</span><span id="derived_observable-1200"><a href="#derived_observable-1200"><span class="linenos">1200</span></a>            <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
+</span><span id="derived_observable-1201"><a href="#derived_observable-1201"><span class="linenos">1201</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
+</span><span id="derived_observable-1202"><a href="#derived_observable-1202"><span class="linenos">1202</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">new_val</span>
+</span><span id="derived_observable-1203"><a href="#derived_observable-1203"><span class="linenos">1203</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">is_merged</span>
+</span><span id="derived_observable-1204"><a href="#derived_observable-1204"><span class="linenos">1204</span></a>        <span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">reweighted</span>
+</span><span id="derived_observable-1205"><a href="#derived_observable-1205"><span class="linenos">1205</span></a>
+</span><span id="derived_observable-1206"><a href="#derived_observable-1206"><span class="linenos">1206</span></a>    <span class="k">if</span> <span class="n">multi</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+</span><span id="derived_observable-1207"><a href="#derived_observable-1207"><span class="linenos">1207</span></a>        <span class="n">final_result</span> <span class="o">=</span> <span class="n">final_result</span><span class="o">.</span><span class="n">item</span><span class="p">()</span>
+</span><span id="derived_observable-1208"><a href="#derived_observable-1208"><span class="linenos">1208</span></a>
+</span><span id="derived_observable-1209"><a href="#derived_observable-1209"><span class="linenos">1209</span></a>    <span class="k">return</span> <span class="n">final_result</span>
+</span></pre></div>
 
         </details>
 
@@ -4688,48 +4691,48 @@ functions. For the ratio of two observables one can e.g. use</p>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Reweight a list of observables.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    weight : Obs</span>
-<span class="sd">        Reweighting factor. An Observable that has to be defined on a superset of the</span>
-<span class="sd">        configurations in obs[i].idl for all i.</span>
-<span class="sd">    obs : list</span>
-<span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
-<span class="sd">    all_configs : bool</span>
-<span class="sd">        if True, the reweighted observables are normalized by the average of</span>
-<span class="sd">        the reweighting factor on all configurations in weight.idl and not</span>
-<span class="sd">        on the configurations in obs[i].idl.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)):</span>
-        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to reweight an Obs that contains covobs!&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Ensembles do not fit&#39;</span><span class="p">)</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-            <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
-                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
-        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
-        <span class="n">w_deltas</span> <span class="o">=</span> <span class="p">{}</span>
-        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-            <span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_reduce_deltas</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-            <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
-        <span class="n">tmp_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
-
-        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;all_configs&#39;</span><span class="p">):</span>
-            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">weight</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)],</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
-
-        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">tmp_obs</span><span class="p">,</span> <span class="n">new_weight</span><span class="p">],</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">))</span>
-        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">True</span>
-        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span>
-
-    <span class="k">return</span> <span class="n">result</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="reweight-1249"><a href="#reweight-1249"><span class="linenos">1249</span></a><span class="k">def</span> <span class="nf">reweight</span><span class="p">(</span><span class="n">weight</span><span class="p">,</span> <span class="n">obs</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="reweight-1250"><a href="#reweight-1250"><span class="linenos">1250</span></a>    <span class="sd">&quot;&quot;&quot;Reweight a list of observables.</span>
+</span><span id="reweight-1251"><a href="#reweight-1251"><span class="linenos">1251</span></a>
+</span><span id="reweight-1252"><a href="#reweight-1252"><span class="linenos">1252</span></a><span class="sd">    Parameters</span>
+</span><span id="reweight-1253"><a href="#reweight-1253"><span class="linenos">1253</span></a><span class="sd">    ----------</span>
+</span><span id="reweight-1254"><a href="#reweight-1254"><span class="linenos">1254</span></a><span class="sd">    weight : Obs</span>
+</span><span id="reweight-1255"><a href="#reweight-1255"><span class="linenos">1255</span></a><span class="sd">        Reweighting factor. An Observable that has to be defined on a superset of the</span>
+</span><span id="reweight-1256"><a href="#reweight-1256"><span class="linenos">1256</span></a><span class="sd">        configurations in obs[i].idl for all i.</span>
+</span><span id="reweight-1257"><a href="#reweight-1257"><span class="linenos">1257</span></a><span class="sd">    obs : list</span>
+</span><span id="reweight-1258"><a href="#reweight-1258"><span class="linenos">1258</span></a><span class="sd">        list of Obs, e.g. [obs1, obs2, obs3].</span>
+</span><span id="reweight-1259"><a href="#reweight-1259"><span class="linenos">1259</span></a><span class="sd">    all_configs : bool</span>
+</span><span id="reweight-1260"><a href="#reweight-1260"><span class="linenos">1260</span></a><span class="sd">        if True, the reweighted observables are normalized by the average of</span>
+</span><span id="reweight-1261"><a href="#reweight-1261"><span class="linenos">1261</span></a><span class="sd">        the reweighting factor on all configurations in weight.idl and not</span>
+</span><span id="reweight-1262"><a href="#reweight-1262"><span class="linenos">1262</span></a><span class="sd">        on the configurations in obs[i].idl.</span>
+</span><span id="reweight-1263"><a href="#reweight-1263"><span class="linenos">1263</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="reweight-1264"><a href="#reweight-1264"><span class="linenos">1264</span></a>    <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="reweight-1265"><a href="#reweight-1265"><span class="linenos">1265</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)):</span>
+</span><span id="reweight-1266"><a href="#reweight-1266"><span class="linenos">1266</span></a>        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
+</span><span id="reweight-1267"><a href="#reweight-1267"><span class="linenos">1267</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to reweight an Obs that contains covobs!&#39;</span><span class="p">)</span>
+</span><span id="reweight-1268"><a href="#reweight-1268"><span class="linenos">1268</span></a>        <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="reweight-1269"><a href="#reweight-1269"><span class="linenos">1269</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Ensembles do not fit&#39;</span><span class="p">)</span>
+</span><span id="reweight-1270"><a href="#reweight-1270"><span class="linenos">1270</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="reweight-1271"><a href="#reweight-1271"><span class="linenos">1271</span></a>            <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
+</span><span id="reweight-1272"><a href="#reweight-1272"><span class="linenos">1272</span></a>                <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
+</span><span id="reweight-1273"><a href="#reweight-1273"><span class="linenos">1273</span></a>        <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="reweight-1274"><a href="#reweight-1274"><span class="linenos">1274</span></a>        <span class="n">w_deltas</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="reweight-1275"><a href="#reweight-1275"><span class="linenos">1275</span></a>        <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="reweight-1276"><a href="#reweight-1276"><span class="linenos">1276</span></a>            <span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">_reduce_deltas</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="reweight-1277"><a href="#reweight-1277"><span class="linenos">1277</span></a>            <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
+</span><span id="reweight-1278"><a href="#reweight-1278"><span class="linenos">1278</span></a>        <span class="n">tmp_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
+</span><span id="reweight-1279"><a href="#reweight-1279"><span class="linenos">1279</span></a>
+</span><span id="reweight-1280"><a href="#reweight-1280"><span class="linenos">1280</span></a>        <span class="k">if</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">&#39;all_configs&#39;</span><span class="p">):</span>
+</span><span id="reweight-1281"><a href="#reweight-1281"><span class="linenos">1281</span></a>            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">weight</span>
+</span><span id="reweight-1282"><a href="#reweight-1282"><span class="linenos">1282</span></a>        <span class="k">else</span><span class="p">:</span>
+</span><span id="reweight-1283"><a href="#reweight-1283"><span class="linenos">1283</span></a>            <span class="n">new_weight</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">w_deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">weight</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)],</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)])</span>
+</span><span id="reweight-1284"><a href="#reweight-1284"><span class="linenos">1284</span></a>
+</span><span id="reweight-1285"><a href="#reweight-1285"><span class="linenos">1285</span></a>        <span class="n">result</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="n">x</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="p">[</span><span class="n">tmp_obs</span><span class="p">,</span> <span class="n">new_weight</span><span class="p">],</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">))</span>
+</span><span id="reweight-1286"><a href="#reweight-1286"><span class="linenos">1286</span></a>        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="kc">True</span>
+</span><span id="reweight-1287"><a href="#reweight-1287"><span class="linenos">1287</span></a>        <span class="n">result</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span>
+</span><span id="reweight-1288"><a href="#reweight-1288"><span class="linenos">1288</span></a>
+</span><span id="reweight-1289"><a href="#reweight-1289"><span class="linenos">1289</span></a>    <span class="k">return</span> <span class="n">result</span>
+</span></pre></div>
 
         </details>
 
@@ -4762,49 +4765,49 @@ on the configurations in obs[i].idl.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="n">obs_a</span><span class="p">,</span> <span class="n">obs_b</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Correlate two observables.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    obs_a : Obs</span>
-<span class="sd">        First observable</span>
-<span class="sd">    obs_b : Obs</span>
-<span class="sd">        Second observable</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    Keep in mind to only correlate primary observables which have not been reweighted</span>
-<span class="sd">    yet. The reweighting has to be applied after correlating the observables.</span>
-<span class="sd">    Currently only works if ensembles are identical (this is not strictly necessary).</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">if</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Ensembles do not fit&#39;</span><span class="p">)</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to correlate Obs that contain covobs!&#39;</span><span class="p">)</span>
-    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
-        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Shapes of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
-        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;idl of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The first observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-    <span class="k">if</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The second observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
-        <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">obs_a</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
-        <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
-
-    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">))</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span>
-    <span class="k">return</span> <span class="n">o</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="correlate-1292"><a href="#correlate-1292"><span class="linenos">1292</span></a><span class="k">def</span> <span class="nf">correlate</span><span class="p">(</span><span class="n">obs_a</span><span class="p">,</span> <span class="n">obs_b</span><span class="p">):</span>
+</span><span id="correlate-1293"><a href="#correlate-1293"><span class="linenos">1293</span></a>    <span class="sd">&quot;&quot;&quot;Correlate two observables.</span>
+</span><span id="correlate-1294"><a href="#correlate-1294"><span class="linenos">1294</span></a>
+</span><span id="correlate-1295"><a href="#correlate-1295"><span class="linenos">1295</span></a><span class="sd">    Parameters</span>
+</span><span id="correlate-1296"><a href="#correlate-1296"><span class="linenos">1296</span></a><span class="sd">    ----------</span>
+</span><span id="correlate-1297"><a href="#correlate-1297"><span class="linenos">1297</span></a><span class="sd">    obs_a : Obs</span>
+</span><span id="correlate-1298"><a href="#correlate-1298"><span class="linenos">1298</span></a><span class="sd">        First observable</span>
+</span><span id="correlate-1299"><a href="#correlate-1299"><span class="linenos">1299</span></a><span class="sd">    obs_b : Obs</span>
+</span><span id="correlate-1300"><a href="#correlate-1300"><span class="linenos">1300</span></a><span class="sd">        Second observable</span>
+</span><span id="correlate-1301"><a href="#correlate-1301"><span class="linenos">1301</span></a>
+</span><span id="correlate-1302"><a href="#correlate-1302"><span class="linenos">1302</span></a><span class="sd">    Notes</span>
+</span><span id="correlate-1303"><a href="#correlate-1303"><span class="linenos">1303</span></a><span class="sd">    -----</span>
+</span><span id="correlate-1304"><a href="#correlate-1304"><span class="linenos">1304</span></a><span class="sd">    Keep in mind to only correlate primary observables which have not been reweighted</span>
+</span><span id="correlate-1305"><a href="#correlate-1305"><span class="linenos">1305</span></a><span class="sd">    yet. The reweighting has to be applied after correlating the observables.</span>
+</span><span id="correlate-1306"><a href="#correlate-1306"><span class="linenos">1306</span></a><span class="sd">    Currently only works if ensembles are identical (this is not strictly necessary).</span>
+</span><span id="correlate-1307"><a href="#correlate-1307"><span class="linenos">1307</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="correlate-1308"><a href="#correlate-1308"><span class="linenos">1308</span></a>
+</span><span id="correlate-1309"><a href="#correlate-1309"><span class="linenos">1309</span></a>    <span class="k">if</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="correlate-1310"><a href="#correlate-1310"><span class="linenos">1310</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Ensembles do not fit&#39;</span><span class="p">)</span>
+</span><span id="correlate-1311"><a href="#correlate-1311"><span class="linenos">1311</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
+</span><span id="correlate-1312"><a href="#correlate-1312"><span class="linenos">1312</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Error: Not possible to correlate Obs that contain covobs!&#39;</span><span class="p">)</span>
+</span><span id="correlate-1313"><a href="#correlate-1313"><span class="linenos">1313</span></a>    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
+</span><span id="correlate-1314"><a href="#correlate-1314"><span class="linenos">1314</span></a>        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="correlate-1315"><a href="#correlate-1315"><span class="linenos">1315</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Shapes of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
+</span><span id="correlate-1316"><a href="#correlate-1316"><span class="linenos">1316</span></a>        <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
+</span><span id="correlate-1317"><a href="#correlate-1317"><span class="linenos">1317</span></a>            <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;idl of ensemble&#39;</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">&#39;do not fit&#39;</span><span class="p">)</span>
+</span><span id="correlate-1318"><a href="#correlate-1318"><span class="linenos">1318</span></a>
+</span><span id="correlate-1319"><a href="#correlate-1319"><span class="linenos">1319</span></a>    <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="correlate-1320"><a href="#correlate-1320"><span class="linenos">1320</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The first observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="correlate-1321"><a href="#correlate-1321"><span class="linenos">1321</span></a>    <span class="k">if</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="correlate-1322"><a href="#correlate-1322"><span class="linenos">1322</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;The second observable is already reweighted.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="correlate-1323"><a href="#correlate-1323"><span class="linenos">1323</span></a>
+</span><span id="correlate-1324"><a href="#correlate-1324"><span class="linenos">1324</span></a>    <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="correlate-1325"><a href="#correlate-1325"><span class="linenos">1325</span></a>    <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="correlate-1326"><a href="#correlate-1326"><span class="linenos">1326</span></a>    <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
+</span><span id="correlate-1327"><a href="#correlate-1327"><span class="linenos">1327</span></a>        <span class="n">new_samples</span><span class="o">.</span><span class="n">append</span><span class="p">((</span><span class="n">obs_a</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="o">*</span> <span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]))</span>
+</span><span id="correlate-1328"><a href="#correlate-1328"><span class="linenos">1328</span></a>        <span class="n">new_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span>
+</span><span id="correlate-1329"><a href="#correlate-1329"><span class="linenos">1329</span></a>
+</span><span id="correlate-1330"><a href="#correlate-1330"><span class="linenos">1330</span></a>    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">),</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
+</span><span id="correlate-1331"><a href="#correlate-1331"><span class="linenos">1331</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">))</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
+</span><span id="correlate-1332"><a href="#correlate-1332"><span class="linenos">1332</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">or</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">reweighted</span>
+</span><span id="correlate-1333"><a href="#correlate-1333"><span class="linenos">1333</span></a>    <span class="k">return</span> <span class="n">o</span>
+</span></pre></div>
 
         </details>
 
@@ -4838,69 +4841,69 @@ Currently only works if ensembles are identical (this is not strictly necessary)
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">covariance</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="n">visualize</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">correlation</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Calculates the covariance matrix of a set of observables.</span>
-
-<span class="sd">    The gamma method has to be applied first to all observables.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    obs : list or numpy.ndarray</span>
-<span class="sd">        List or one dimensional array of Obs</span>
-<span class="sd">    visualize : bool</span>
-<span class="sd">        If True plots the corresponding normalized correlation matrix (default False).</span>
-<span class="sd">    correlation : bool</span>
-<span class="sd">        If True the correlation instead of the covariance is returned (default False).</span>
-<span class="sd">    smooth : None or int</span>
-<span class="sd">        If smooth is an integer &#39;E&#39; between 2 and the dimension of the matrix minus 1 the eigenvalue</span>
-<span class="sd">        smoothing procedure of hep-lat/9412087 is applied to the correlation matrix which leaves the</span>
-<span class="sd">        largest E eigenvalues essentially unchanged and smoothes the smaller eigenvalues to avoid extremely</span>
-<span class="sd">        small ones.</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    The covariance is estimated by calculating the correlation matrix assuming no autocorrelation and then rescaling the correlation matrix by the full errors including the previous gamma method estimate for the autocorrelation of the observables. The covariance at windowsize 0 is guaranteed to be positive semi-definite</span>
-<span class="sd">    $$v_i\Gamma_{ij}(0)v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i,j}v_i\delta_i^s\delta_j^s v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i}|v_i\delta_i^s|^2\geq 0\,,$$ for every $v\in\mathbb{R}^M$, while such an identity does not hold for larger windows/lags.</span>
-<span class="sd">    For observables defined on a single ensemble our approximation is equivalent to assuming that the integrated autocorrelation time of an off-diagonal element is equal to the geometric mean of the integrated autocorrelation times of the corresponding diagonal elements.</span>
-<span class="sd">    $$\tau_{\mathrm{int}, ij}=\sqrt{\tau_{\mathrm{int}, i}\times \tau_{\mathrm{int}, j}}$$</span>
-<span class="sd">    This construction ensures that the estimated covariance matrix is positive semi-definite (up to numerical rounding errors).</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-
-    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
-
-    <span class="n">max_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">])</span>
-    <span class="k">if</span> <span class="n">max_samples</span> <span class="o">&lt;=</span> <span class="n">length</span> <span class="ow">and</span> <span class="ow">not</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]:</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;The dimension of the covariance matrix (</span><span class="si">{</span><span class="n">length</span><span class="si">}</span><span class="s2">) is larger or equal to the number of samples (</span><span class="si">{</span><span class="n">max_samples</span><span class="si">}</span><span class="s2">). This will result in a rank deficient matrix.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span>
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">length</span><span class="p">):</span>
-        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">length</span><span class="p">):</span>
-            <span class="n">cov</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">_covariance_element</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">j</span><span class="p">])</span>
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">cov</span> <span class="o">+</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">))</span>
-
-    <span class="n">corr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span>
-
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">smooth</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
-        <span class="n">corr</span> <span class="o">=</span> <span class="n">_smooth_eigenvalues</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">smooth</span><span class="p">)</span>
-
-    <span class="n">errors</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span>
-    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span> <span class="o">@</span> <span class="n">corr</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span>
-
-    <span class="n">eigenvalues</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">cov</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">eigenvalues</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">):</span>
-        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not positive semi-definite (Eigenvalues: &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">eigenvalues</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;)&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
-
-    <span class="k">if</span> <span class="n">visualize</span><span class="p">:</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">matshow</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">1</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">set_cmap</span><span class="p">(</span><span class="s1">&#39;RdBu&#39;</span><span class="p">)</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">()</span>
-        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
-
-    <span class="k">if</span> <span class="n">correlation</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">corr</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">cov</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="covariance-1336"><a href="#covariance-1336"><span class="linenos">1336</span></a><span class="k">def</span> <span class="nf">covariance</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="n">visualize</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">correlation</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">smooth</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="covariance-1337"><a href="#covariance-1337"><span class="linenos">1337</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Calculates the covariance matrix of a set of observables.</span>
+</span><span id="covariance-1338"><a href="#covariance-1338"><span class="linenos">1338</span></a>
+</span><span id="covariance-1339"><a href="#covariance-1339"><span class="linenos">1339</span></a><span class="sd">    The gamma method has to be applied first to all observables.</span>
+</span><span id="covariance-1340"><a href="#covariance-1340"><span class="linenos">1340</span></a>
+</span><span id="covariance-1341"><a href="#covariance-1341"><span class="linenos">1341</span></a><span class="sd">    Parameters</span>
+</span><span id="covariance-1342"><a href="#covariance-1342"><span class="linenos">1342</span></a><span class="sd">    ----------</span>
+</span><span id="covariance-1343"><a href="#covariance-1343"><span class="linenos">1343</span></a><span class="sd">    obs : list or numpy.ndarray</span>
+</span><span id="covariance-1344"><a href="#covariance-1344"><span class="linenos">1344</span></a><span class="sd">        List or one dimensional array of Obs</span>
+</span><span id="covariance-1345"><a href="#covariance-1345"><span class="linenos">1345</span></a><span class="sd">    visualize : bool</span>
+</span><span id="covariance-1346"><a href="#covariance-1346"><span class="linenos">1346</span></a><span class="sd">        If True plots the corresponding normalized correlation matrix (default False).</span>
+</span><span id="covariance-1347"><a href="#covariance-1347"><span class="linenos">1347</span></a><span class="sd">    correlation : bool</span>
+</span><span id="covariance-1348"><a href="#covariance-1348"><span class="linenos">1348</span></a><span class="sd">        If True the correlation instead of the covariance is returned (default False).</span>
+</span><span id="covariance-1349"><a href="#covariance-1349"><span class="linenos">1349</span></a><span class="sd">    smooth : None or int</span>
+</span><span id="covariance-1350"><a href="#covariance-1350"><span class="linenos">1350</span></a><span class="sd">        If smooth is an integer &#39;E&#39; between 2 and the dimension of the matrix minus 1 the eigenvalue</span>
+</span><span id="covariance-1351"><a href="#covariance-1351"><span class="linenos">1351</span></a><span class="sd">        smoothing procedure of hep-lat/9412087 is applied to the correlation matrix which leaves the</span>
+</span><span id="covariance-1352"><a href="#covariance-1352"><span class="linenos">1352</span></a><span class="sd">        largest E eigenvalues essentially unchanged and smoothes the smaller eigenvalues to avoid extremely</span>
+</span><span id="covariance-1353"><a href="#covariance-1353"><span class="linenos">1353</span></a><span class="sd">        small ones.</span>
+</span><span id="covariance-1354"><a href="#covariance-1354"><span class="linenos">1354</span></a>
+</span><span id="covariance-1355"><a href="#covariance-1355"><span class="linenos">1355</span></a><span class="sd">    Notes</span>
+</span><span id="covariance-1356"><a href="#covariance-1356"><span class="linenos">1356</span></a><span class="sd">    -----</span>
+</span><span id="covariance-1357"><a href="#covariance-1357"><span class="linenos">1357</span></a><span class="sd">    The covariance is estimated by calculating the correlation matrix assuming no autocorrelation and then rescaling the correlation matrix by the full errors including the previous gamma method estimate for the autocorrelation of the observables. The covariance at windowsize 0 is guaranteed to be positive semi-definite</span>
+</span><span id="covariance-1358"><a href="#covariance-1358"><span class="linenos">1358</span></a><span class="sd">    $$v_i\Gamma_{ij}(0)v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i,j}v_i\delta_i^s\delta_j^s v_j=\frac{1}{N}\sum_{s=1}^N\sum_{i}|v_i\delta_i^s|^2\geq 0\,,$$ for every $v\in\mathbb{R}^M$, while such an identity does not hold for larger windows/lags.</span>
+</span><span id="covariance-1359"><a href="#covariance-1359"><span class="linenos">1359</span></a><span class="sd">    For observables defined on a single ensemble our approximation is equivalent to assuming that the integrated autocorrelation time of an off-diagonal element is equal to the geometric mean of the integrated autocorrelation times of the corresponding diagonal elements.</span>
+</span><span id="covariance-1360"><a href="#covariance-1360"><span class="linenos">1360</span></a><span class="sd">    $$\tau_{\mathrm{int}, ij}=\sqrt{\tau_{\mathrm{int}, i}\times \tau_{\mathrm{int}, j}}$$</span>
+</span><span id="covariance-1361"><a href="#covariance-1361"><span class="linenos">1361</span></a><span class="sd">    This construction ensures that the estimated covariance matrix is positive semi-definite (up to numerical rounding errors).</span>
+</span><span id="covariance-1362"><a href="#covariance-1362"><span class="linenos">1362</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="covariance-1363"><a href="#covariance-1363"><span class="linenos">1363</span></a>
+</span><span id="covariance-1364"><a href="#covariance-1364"><span class="linenos">1364</span></a>    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)</span>
+</span><span id="covariance-1365"><a href="#covariance-1365"><span class="linenos">1365</span></a>
+</span><span id="covariance-1366"><a href="#covariance-1366"><span class="linenos">1366</span></a>    <span class="n">max_samples</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">o</span><span class="o">.</span><span class="n">N</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">])</span>
+</span><span id="covariance-1367"><a href="#covariance-1367"><span class="linenos">1367</span></a>    <span class="k">if</span> <span class="n">max_samples</span> <span class="o">&lt;=</span> <span class="n">length</span> <span class="ow">and</span> <span class="ow">not</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">sublist</span> <span class="ow">in</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">sublist</span><span class="p">]:</span>
+</span><span id="covariance-1368"><a href="#covariance-1368"><span class="linenos">1368</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;The dimension of the covariance matrix (</span><span class="si">{</span><span class="n">length</span><span class="si">}</span><span class="s2">) is larger or equal to the number of samples (</span><span class="si">{</span><span class="n">max_samples</span><span class="si">}</span><span class="s2">). This will result in a rank deficient matrix.&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="covariance-1369"><a href="#covariance-1369"><span class="linenos">1369</span></a>
+</span><span id="covariance-1370"><a href="#covariance-1370"><span class="linenos">1370</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span>
+</span><span id="covariance-1371"><a href="#covariance-1371"><span class="linenos">1371</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">length</span><span class="p">):</span>
+</span><span id="covariance-1372"><a href="#covariance-1372"><span class="linenos">1372</span></a>        <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">length</span><span class="p">):</span>
+</span><span id="covariance-1373"><a href="#covariance-1373"><span class="linenos">1373</span></a>            <span class="n">cov</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">_covariance_element</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">obs</span><span class="p">[</span><span class="n">j</span><span class="p">])</span>
+</span><span id="covariance-1374"><a href="#covariance-1374"><span class="linenos">1374</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">cov</span> <span class="o">+</span> <span class="n">cov</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">))</span>
+</span><span id="covariance-1375"><a href="#covariance-1375"><span class="linenos">1375</span></a>
+</span><span id="covariance-1376"><a href="#covariance-1376"><span class="linenos">1376</span></a>    <span class="n">corr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span> <span class="o">@</span> <span class="n">cov</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="mi">1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">cov</span><span class="p">)))</span>
+</span><span id="covariance-1377"><a href="#covariance-1377"><span class="linenos">1377</span></a>
+</span><span id="covariance-1378"><a href="#covariance-1378"><span class="linenos">1378</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">smooth</span><span class="p">,</span> <span class="nb">int</span><span class="p">):</span>
+</span><span id="covariance-1379"><a href="#covariance-1379"><span class="linenos">1379</span></a>        <span class="n">corr</span> <span class="o">=</span> <span class="n">_smooth_eigenvalues</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">smooth</span><span class="p">)</span>
+</span><span id="covariance-1380"><a href="#covariance-1380"><span class="linenos">1380</span></a>
+</span><span id="covariance-1381"><a href="#covariance-1381"><span class="linenos">1381</span></a>    <span class="n">errors</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span><span class="o">.</span><span class="n">dvalue</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">]</span>
+</span><span id="covariance-1382"><a href="#covariance-1382"><span class="linenos">1382</span></a>    <span class="n">cov</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span> <span class="o">@</span> <span class="n">corr</span> <span class="o">@</span> <span class="n">np</span><span class="o">.</span><span class="n">diag</span><span class="p">(</span><span class="n">errors</span><span class="p">)</span>
+</span><span id="covariance-1383"><a href="#covariance-1383"><span class="linenos">1383</span></a>
+</span><span id="covariance-1384"><a href="#covariance-1384"><span class="linenos">1384</span></a>    <span class="n">eigenvalues</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">cov</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="covariance-1385"><a href="#covariance-1385"><span class="linenos">1385</span></a>    <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">eigenvalues</span> <span class="o">&gt;=</span> <span class="mi">0</span><span class="p">):</span>
+</span><span id="covariance-1386"><a href="#covariance-1386"><span class="linenos">1386</span></a>        <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">&quot;Covariance matrix is not positive semi-definite (Eigenvalues: &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">eigenvalues</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot;)&quot;</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
+</span><span id="covariance-1387"><a href="#covariance-1387"><span class="linenos">1387</span></a>
+</span><span id="covariance-1388"><a href="#covariance-1388"><span class="linenos">1388</span></a>    <span class="k">if</span> <span class="n">visualize</span><span class="p">:</span>
+</span><span id="covariance-1389"><a href="#covariance-1389"><span class="linenos">1389</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">matshow</span><span class="p">(</span><span class="n">corr</span><span class="p">,</span> <span class="n">vmin</span><span class="o">=-</span><span class="mi">1</span><span class="p">,</span> <span class="n">vmax</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+</span><span id="covariance-1390"><a href="#covariance-1390"><span class="linenos">1390</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">set_cmap</span><span class="p">(</span><span class="s1">&#39;RdBu&#39;</span><span class="p">)</span>
+</span><span id="covariance-1391"><a href="#covariance-1391"><span class="linenos">1391</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">()</span>
+</span><span id="covariance-1392"><a href="#covariance-1392"><span class="linenos">1392</span></a>        <span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
+</span><span id="covariance-1393"><a href="#covariance-1393"><span class="linenos">1393</span></a>
+</span><span id="covariance-1394"><a href="#covariance-1394"><span class="linenos">1394</span></a>    <span class="k">if</span> <span class="n">correlation</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
+</span><span id="covariance-1395"><a href="#covariance-1395"><span class="linenos">1395</span></a>        <span class="k">return</span> <span class="n">corr</span>
+</span><span id="covariance-1396"><a href="#covariance-1396"><span class="linenos">1396</span></a>    <span class="k">else</span><span class="p">:</span>
+</span><span id="covariance-1397"><a href="#covariance-1397"><span class="linenos">1397</span></a>        <span class="k">return</span> <span class="n">cov</span>
+</span></pre></div>
 
         </details>
 
@@ -4945,25 +4948,25 @@ This construction ensures that the estimated covariance matrix is positive semi-
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">import_jackknife</span><span class="p">(</span><span class="n">jacks</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Imports jackknife samples and returns an Obs</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    jacks : numpy.ndarray</span>
-<span class="sd">        numpy array containing the mean value as zeroth entry and</span>
-<span class="sd">        the N jackknife samples as first to Nth entry.</span>
-<span class="sd">    name : str</span>
-<span class="sd">        name of the ensemble the samples are defined on.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">jacks</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span>
-    <span class="n">prj</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span> <span class="o">-</span> <span class="p">(</span><span class="n">length</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">length</span><span class="p">))</span>
-    <span class="n">samples</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">@</span> <span class="n">prj</span>
-    <span class="n">mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span>
-    <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">samples</span> <span class="o">-</span> <span class="n">mean</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="p">[</span><span class="n">mean</span><span class="p">])</span>
-    <span class="n">new_obs</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">return</span> <span class="n">new_obs</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="import_jackknife-1476"><a href="#import_jackknife-1476"><span class="linenos">1476</span></a><span class="k">def</span> <span class="nf">import_jackknife</span><span class="p">(</span><span class="n">jacks</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="import_jackknife-1477"><a href="#import_jackknife-1477"><span class="linenos">1477</span></a>    <span class="sd">&quot;&quot;&quot;Imports jackknife samples and returns an Obs</span>
+</span><span id="import_jackknife-1478"><a href="#import_jackknife-1478"><span class="linenos">1478</span></a>
+</span><span id="import_jackknife-1479"><a href="#import_jackknife-1479"><span class="linenos">1479</span></a><span class="sd">    Parameters</span>
+</span><span id="import_jackknife-1480"><a href="#import_jackknife-1480"><span class="linenos">1480</span></a><span class="sd">    ----------</span>
+</span><span id="import_jackknife-1481"><a href="#import_jackknife-1481"><span class="linenos">1481</span></a><span class="sd">    jacks : numpy.ndarray</span>
+</span><span id="import_jackknife-1482"><a href="#import_jackknife-1482"><span class="linenos">1482</span></a><span class="sd">        numpy array containing the mean value as zeroth entry and</span>
+</span><span id="import_jackknife-1483"><a href="#import_jackknife-1483"><span class="linenos">1483</span></a><span class="sd">        the N jackknife samples as first to Nth entry.</span>
+</span><span id="import_jackknife-1484"><a href="#import_jackknife-1484"><span class="linenos">1484</span></a><span class="sd">    name : str</span>
+</span><span id="import_jackknife-1485"><a href="#import_jackknife-1485"><span class="linenos">1485</span></a><span class="sd">        name of the ensemble the samples are defined on.</span>
+</span><span id="import_jackknife-1486"><a href="#import_jackknife-1486"><span class="linenos">1486</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="import_jackknife-1487"><a href="#import_jackknife-1487"><span class="linenos">1487</span></a>    <span class="n">length</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">jacks</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span>
+</span><span id="import_jackknife-1488"><a href="#import_jackknife-1488"><span class="linenos">1488</span></a>    <span class="n">prj</span> <span class="o">=</span> <span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">((</span><span class="n">length</span><span class="p">,</span> <span class="n">length</span><span class="p">))</span> <span class="o">-</span> <span class="p">(</span><span class="n">length</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">identity</span><span class="p">(</span><span class="n">length</span><span class="p">))</span>
+</span><span id="import_jackknife-1489"><a href="#import_jackknife-1489"><span class="linenos">1489</span></a>    <span class="n">samples</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">1</span><span class="p">:]</span> <span class="o">@</span> <span class="n">prj</span>
+</span><span id="import_jackknife-1490"><a href="#import_jackknife-1490"><span class="linenos">1490</span></a>    <span class="n">mean</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">samples</span><span class="p">)</span>
+</span><span id="import_jackknife-1491"><a href="#import_jackknife-1491"><span class="linenos">1491</span></a>    <span class="n">new_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">samples</span> <span class="o">-</span> <span class="n">mean</span><span class="p">],</span> <span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">idl</span><span class="o">=</span><span class="n">idl</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="p">[</span><span class="n">mean</span><span class="p">])</span>
+</span><span id="import_jackknife-1492"><a href="#import_jackknife-1492"><span class="linenos">1492</span></a>    <span class="n">new_obs</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">jacks</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="import_jackknife-1493"><a href="#import_jackknife-1493"><span class="linenos">1493</span></a>    <span class="k">return</span> <span class="n">new_obs</span>
+</span></pre></div>
 
         </details>
 
@@ -4992,36 +4995,36 @@ name of the ensemble the samples are defined on.</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">merge_obs</span><span class="p">(</span><span class="n">list_of_obs</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Combine all observables in list_of_obs into one new observable</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    list_of_obs : list</span>
-<span class="sd">        list of the Obs object to be combined</span>
-
-<span class="sd">    Notes</span>
-<span class="sd">    -----</span>
-<span class="sd">    It is not possible to combine obs which are based on the same replicum</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-    <span class="n">replist</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">list_of_obs</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">]</span>
-    <span class="k">if</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">replist</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
-    <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">]):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Not possible to merge data that contains covobs!&#39;</span><span class="p">)</span>
-    <span class="n">new_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="n">idl_dict</span> <span class="o">=</span> <span class="p">{}</span>
-    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">:</span>
-        <span class="n">new_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
-                        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)</span> <span class="o">|</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">)})</span>
-        <span class="n">idl_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)})</span>
-
-    <span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">new_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
-    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">new_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">],</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">])</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
-    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">reweighted</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span>
-    <span class="k">return</span> <span class="n">o</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="merge_obs-1496"><a href="#merge_obs-1496"><span class="linenos">1496</span></a><span class="k">def</span> <span class="nf">merge_obs</span><span class="p">(</span><span class="n">list_of_obs</span><span class="p">):</span>
+</span><span id="merge_obs-1497"><a href="#merge_obs-1497"><span class="linenos">1497</span></a>    <span class="sd">&quot;&quot;&quot;Combine all observables in list_of_obs into one new observable</span>
+</span><span id="merge_obs-1498"><a href="#merge_obs-1498"><span class="linenos">1498</span></a>
+</span><span id="merge_obs-1499"><a href="#merge_obs-1499"><span class="linenos">1499</span></a><span class="sd">    Parameters</span>
+</span><span id="merge_obs-1500"><a href="#merge_obs-1500"><span class="linenos">1500</span></a><span class="sd">    ----------</span>
+</span><span id="merge_obs-1501"><a href="#merge_obs-1501"><span class="linenos">1501</span></a><span class="sd">    list_of_obs : list</span>
+</span><span id="merge_obs-1502"><a href="#merge_obs-1502"><span class="linenos">1502</span></a><span class="sd">        list of the Obs object to be combined</span>
+</span><span id="merge_obs-1503"><a href="#merge_obs-1503"><span class="linenos">1503</span></a>
+</span><span id="merge_obs-1504"><a href="#merge_obs-1504"><span class="linenos">1504</span></a><span class="sd">    Notes</span>
+</span><span id="merge_obs-1505"><a href="#merge_obs-1505"><span class="linenos">1505</span></a><span class="sd">    -----</span>
+</span><span id="merge_obs-1506"><a href="#merge_obs-1506"><span class="linenos">1506</span></a><span class="sd">    It is not possible to combine obs which are based on the same replicum</span>
+</span><span id="merge_obs-1507"><a href="#merge_obs-1507"><span class="linenos">1507</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="merge_obs-1508"><a href="#merge_obs-1508"><span class="linenos">1508</span></a>    <span class="n">replist</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">list_of_obs</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">]</span>
+</span><span id="merge_obs-1509"><a href="#merge_obs-1509"><span class="linenos">1509</span></a>    <span class="k">if</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">replist</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
+</span><span id="merge_obs-1510"><a href="#merge_obs-1510"><span class="linenos">1510</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
+</span><span id="merge_obs-1511"><a href="#merge_obs-1511"><span class="linenos">1511</span></a>    <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">]):</span>
+</span><span id="merge_obs-1512"><a href="#merge_obs-1512"><span class="linenos">1512</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Not possible to merge data that contains covobs!&#39;</span><span class="p">)</span>
+</span><span id="merge_obs-1513"><a href="#merge_obs-1513"><span class="linenos">1513</span></a>    <span class="n">new_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="merge_obs-1514"><a href="#merge_obs-1514"><span class="linenos">1514</span></a>    <span class="n">idl_dict</span> <span class="o">=</span> <span class="p">{}</span>
+</span><span id="merge_obs-1515"><a href="#merge_obs-1515"><span class="linenos">1515</span></a>    <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">:</span>
+</span><span id="merge_obs-1516"><a href="#merge_obs-1516"><span class="linenos">1516</span></a>        <span class="n">new_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="o">+</span> <span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span>
+</span><span id="merge_obs-1517"><a href="#merge_obs-1517"><span class="linenos">1517</span></a>                        <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)</span> <span class="o">|</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">r_values</span><span class="p">)})</span>
+</span><span id="merge_obs-1518"><a href="#merge_obs-1518"><span class="linenos">1518</span></a>        <span class="n">idl_dict</span><span class="o">.</span><span class="n">update</span><span class="p">({</span><span class="n">key</span><span class="p">:</span> <span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">set</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">deltas</span><span class="p">)})</span>
+</span><span id="merge_obs-1519"><a href="#merge_obs-1519"><span class="linenos">1519</span></a>
+</span><span id="merge_obs-1520"><a href="#merge_obs-1520"><span class="linenos">1520</span></a>    <span class="n">names</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">new_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+</span><span id="merge_obs-1521"><a href="#merge_obs-1521"><span class="linenos">1521</span></a>    <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([</span><span class="n">new_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">],</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="p">[</span><span class="n">idl_dict</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">names</span><span class="p">])</span>
+</span><span id="merge_obs-1522"><a href="#merge_obs-1522"><span class="linenos">1522</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">np</span><span class="o">.</span><span class="n">any</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">is_merged</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">name</span><span class="p">,</span> <span class="kc">False</span><span class="p">)</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="p">}</span>
+</span><span id="merge_obs-1523"><a href="#merge_obs-1523"><span class="linenos">1523</span></a>    <span class="n">o</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">([</span><span class="n">oi</span><span class="o">.</span><span class="n">reweighted</span> <span class="k">for</span> <span class="n">oi</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">])</span>
+</span><span id="merge_obs-1524"><a href="#merge_obs-1524"><span class="linenos">1524</span></a>    <span class="k">return</span> <span class="n">o</span>
+</span></pre></div>
 
         </details>
 
@@ -5051,48 +5054,48 @@ list of the Obs object to be combined</li>
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">cov_Obs</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Create an Obs based on mean(s) and a covariance matrix</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    ----------</span>
-<span class="sd">    mean : list of floats or float</span>
-<span class="sd">        N mean value(s) of the new Obs</span>
-<span class="sd">    cov : list or array</span>
-<span class="sd">        2d (NxN) Covariance matrix, 1d diagonal entries or 0d covariance</span>
-<span class="sd">    name : str</span>
-<span class="sd">        identifier for the covariance matrix</span>
-<span class="sd">    grad : list or array</span>
-<span class="sd">        Gradient of the Covobs wrt. the means belonging to cov.</span>
-<span class="sd">    &quot;&quot;&quot;</span>
-
-    <span class="k">def</span> <span class="nf">covobs_to_obs</span><span class="p">(</span><span class="n">co</span><span class="p">):</span>
-        <span class="sd">&quot;&quot;&quot;Make an Obs out of a Covobs</span>
-
-<span class="sd">        Parameters</span>
-<span class="sd">        ----------</span>
-<span class="sd">        co : Covobs</span>
-<span class="sd">            Covobs to be embedded into the Obs</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[])</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">co</span><span class="o">.</span><span class="n">value</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
-        <span class="n">o</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
-        <span class="k">return</span> <span class="n">o</span>
-
-    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">)):</span>
-        <span class="n">means</span> <span class="o">=</span> <span class="p">[</span><span class="n">means</span><span class="p">]</span>
-
-    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)):</span>
-        <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">covobs_to_obs</span><span class="p">(</span><span class="n">Covobs</span><span class="p">(</span><span class="n">means</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="n">i</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">grad</span><span class="p">)))</span>
-    <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">):</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You have to provide </span><span class="si">%d</span><span class="s1"> mean values!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
-    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
-    <span class="k">return</span> <span class="n">ol</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="cov_Obs-1527"><a href="#cov_Obs-1527"><span class="linenos">1527</span></a><span class="k">def</span> <span class="nf">cov_Obs</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+</span><span id="cov_Obs-1528"><a href="#cov_Obs-1528"><span class="linenos">1528</span></a>    <span class="sd">&quot;&quot;&quot;Create an Obs based on mean(s) and a covariance matrix</span>
+</span><span id="cov_Obs-1529"><a href="#cov_Obs-1529"><span class="linenos">1529</span></a>
+</span><span id="cov_Obs-1530"><a href="#cov_Obs-1530"><span class="linenos">1530</span></a><span class="sd">    Parameters</span>
+</span><span id="cov_Obs-1531"><a href="#cov_Obs-1531"><span class="linenos">1531</span></a><span class="sd">    ----------</span>
+</span><span id="cov_Obs-1532"><a href="#cov_Obs-1532"><span class="linenos">1532</span></a><span class="sd">    mean : list of floats or float</span>
+</span><span id="cov_Obs-1533"><a href="#cov_Obs-1533"><span class="linenos">1533</span></a><span class="sd">        N mean value(s) of the new Obs</span>
+</span><span id="cov_Obs-1534"><a href="#cov_Obs-1534"><span class="linenos">1534</span></a><span class="sd">    cov : list or array</span>
+</span><span id="cov_Obs-1535"><a href="#cov_Obs-1535"><span class="linenos">1535</span></a><span class="sd">        2d (NxN) Covariance matrix, 1d diagonal entries or 0d covariance</span>
+</span><span id="cov_Obs-1536"><a href="#cov_Obs-1536"><span class="linenos">1536</span></a><span class="sd">    name : str</span>
+</span><span id="cov_Obs-1537"><a href="#cov_Obs-1537"><span class="linenos">1537</span></a><span class="sd">        identifier for the covariance matrix</span>
+</span><span id="cov_Obs-1538"><a href="#cov_Obs-1538"><span class="linenos">1538</span></a><span class="sd">    grad : list or array</span>
+</span><span id="cov_Obs-1539"><a href="#cov_Obs-1539"><span class="linenos">1539</span></a><span class="sd">        Gradient of the Covobs wrt. the means belonging to cov.</span>
+</span><span id="cov_Obs-1540"><a href="#cov_Obs-1540"><span class="linenos">1540</span></a><span class="sd">    &quot;&quot;&quot;</span>
+</span><span id="cov_Obs-1541"><a href="#cov_Obs-1541"><span class="linenos">1541</span></a>
+</span><span id="cov_Obs-1542"><a href="#cov_Obs-1542"><span class="linenos">1542</span></a>    <span class="k">def</span> <span class="nf">covobs_to_obs</span><span class="p">(</span><span class="n">co</span><span class="p">):</span>
+</span><span id="cov_Obs-1543"><a href="#cov_Obs-1543"><span class="linenos">1543</span></a>        <span class="sd">&quot;&quot;&quot;Make an Obs out of a Covobs</span>
+</span><span id="cov_Obs-1544"><a href="#cov_Obs-1544"><span class="linenos">1544</span></a>
+</span><span id="cov_Obs-1545"><a href="#cov_Obs-1545"><span class="linenos">1545</span></a><span class="sd">        Parameters</span>
+</span><span id="cov_Obs-1546"><a href="#cov_Obs-1546"><span class="linenos">1546</span></a><span class="sd">        ----------</span>
+</span><span id="cov_Obs-1547"><a href="#cov_Obs-1547"><span class="linenos">1547</span></a><span class="sd">        co : Covobs</span>
+</span><span id="cov_Obs-1548"><a href="#cov_Obs-1548"><span class="linenos">1548</span></a><span class="sd">            Covobs to be embedded into the Obs</span>
+</span><span id="cov_Obs-1549"><a href="#cov_Obs-1549"><span class="linenos">1549</span></a><span class="sd">        &quot;&quot;&quot;</span>
+</span><span id="cov_Obs-1550"><a href="#cov_Obs-1550"><span class="linenos">1550</span></a>        <span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[],</span> <span class="n">means</span><span class="o">=</span><span class="p">[])</span>
+</span><span id="cov_Obs-1551"><a href="#cov_Obs-1551"><span class="linenos">1551</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">co</span><span class="o">.</span><span class="n">value</span>
+</span><span id="cov_Obs-1552"><a href="#cov_Obs-1552"><span class="linenos">1552</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
+</span><span id="cov_Obs-1553"><a href="#cov_Obs-1553"><span class="linenos">1553</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
+</span><span id="cov_Obs-1554"><a href="#cov_Obs-1554"><span class="linenos">1554</span></a>        <span class="n">o</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
+</span><span id="cov_Obs-1555"><a href="#cov_Obs-1555"><span class="linenos">1555</span></a>        <span class="k">return</span> <span class="n">o</span>
+</span><span id="cov_Obs-1556"><a href="#cov_Obs-1556"><span class="linenos">1556</span></a>
+</span><span id="cov_Obs-1557"><a href="#cov_Obs-1557"><span class="linenos">1557</span></a>    <span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
+</span><span id="cov_Obs-1558"><a href="#cov_Obs-1558"><span class="linenos">1558</span></a>    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">means</span><span class="p">,</span> <span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">)):</span>
+</span><span id="cov_Obs-1559"><a href="#cov_Obs-1559"><span class="linenos">1559</span></a>        <span class="n">means</span> <span class="o">=</span> <span class="p">[</span><span class="n">means</span><span class="p">]</span>
+</span><span id="cov_Obs-1560"><a href="#cov_Obs-1560"><span class="linenos">1560</span></a>
+</span><span id="cov_Obs-1561"><a href="#cov_Obs-1561"><span class="linenos">1561</span></a>    <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)):</span>
+</span><span id="cov_Obs-1562"><a href="#cov_Obs-1562"><span class="linenos">1562</span></a>        <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">covobs_to_obs</span><span class="p">(</span><span class="n">Covobs</span><span class="p">(</span><span class="n">means</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="n">i</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">grad</span><span class="p">)))</span>
+</span><span id="cov_Obs-1563"><a href="#cov_Obs-1563"><span class="linenos">1563</span></a>    <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">):</span>
+</span><span id="cov_Obs-1564"><a href="#cov_Obs-1564"><span class="linenos">1564</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;You have to provide </span><span class="si">%d</span><span class="s1"> mean values!&#39;</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
+</span><span id="cov_Obs-1565"><a href="#cov_Obs-1565"><span class="linenos">1565</span></a>    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+</span><span id="cov_Obs-1566"><a href="#cov_Obs-1566"><span class="linenos">1566</span></a>        <span class="k">return</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
+</span><span id="cov_Obs-1567"><a href="#cov_Obs-1567"><span class="linenos">1567</span></a>    <span class="k">return</span> <span class="n">ol</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/roots.html b/docs/pyerrors/roots.html
index 0abf901e..7b634c8a 100644
--- a/docs/pyerrors/roots.html
+++ b/docs/pyerrors/roots.html
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@@ -54,7 +54,7 @@
 
 
 
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@@ -69,48 +69,48 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<span class="kn">import</span> <span class="nn">scipy.optimize</span>
-<span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">jacobian</span>
-<span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">derived_observable</span>
-
-
-<span class="k">def</span> <span class="nf">find_root</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Finds the root of the function func(x, d) where d is an `Obs`.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------------</span>
-<span class="sd">    d : Obs</span>
-<span class="sd">        Obs passed to the function.</span>
-<span class="sd">    func : object</span>
-<span class="sd">        Function to be minimized. Any numpy functions have to use the autograd.numpy wrapper.</span>
-<span class="sd">        Example:</span>
-<span class="sd">        ```python</span>
-<span class="sd">        import autograd.numpy as anp</span>
-<span class="sd">        def root_func(x, d):</span>
-<span class="sd">            return anp.exp(-x ** 2) - d</span>
-<span class="sd">        ```</span>
-<span class="sd">    guess : float</span>
-<span class="sd">        Initial guess for the minimization.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    Obs</span>
-<span class="sd">        `Obs` valued root of the function.</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-    <span class="n">root</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">fsolve</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="p">,</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-
-    <span class="c1"># Error propagation as detailed in arXiv:1809.01289</span>
-    <span class="n">dx</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">da</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">u</span><span class="p">,</span> <span class="n">v</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">u</span><span class="p">))(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within root functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
-    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span> <span class="n">da</span> <span class="o">/</span> <span class="n">dx</span>
-
-    <span class="n">res</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="n">d</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">deriv</span><span class="p">])</span>
-    <span class="k">return</span> <span class="n">res</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos"> 0</span></a><span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
+</span><span id="L-1"><a href="#L-1"><span class="linenos"> 1</span></a><span class="kn">import</span> <span class="nn">scipy.optimize</span>
+</span><span id="L-2"><a href="#L-2"><span class="linenos"> 2</span></a><span class="kn">from</span> <span class="nn">autograd</span> <span class="kn">import</span> <span class="n">jacobian</span>
+</span><span id="L-3"><a href="#L-3"><span class="linenos"> 3</span></a><span class="kn">from</span> <span class="nn">.obs</span> <span class="kn">import</span> <span class="n">derived_observable</span>
+</span><span id="L-4"><a href="#L-4"><span class="linenos"> 4</span></a>
+</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a>
+</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="k">def</span> <span class="nf">find_root</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Finds the root of the function func(x, d) where d is an `Obs`.</span>
+</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a>
+</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="sd">    Parameters</span>
+</span><span id="L-10"><a href="#L-10"><span class="linenos">10</span></a><span class="sd">    -----------------</span>
+</span><span id="L-11"><a href="#L-11"><span class="linenos">11</span></a><span class="sd">    d : Obs</span>
+</span><span id="L-12"><a href="#L-12"><span class="linenos">12</span></a><span class="sd">        Obs passed to the function.</span>
+</span><span id="L-13"><a href="#L-13"><span class="linenos">13</span></a><span class="sd">    func : object</span>
+</span><span id="L-14"><a href="#L-14"><span class="linenos">14</span></a><span class="sd">        Function to be minimized. Any numpy functions have to use the autograd.numpy wrapper.</span>
+</span><span id="L-15"><a href="#L-15"><span class="linenos">15</span></a><span class="sd">        Example:</span>
+</span><span id="L-16"><a href="#L-16"><span class="linenos">16</span></a><span class="sd">        ```python</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos">17</span></a><span class="sd">        import autograd.numpy as anp</span>
+</span><span id="L-18"><a href="#L-18"><span class="linenos">18</span></a><span class="sd">        def root_func(x, d):</span>
+</span><span id="L-19"><a href="#L-19"><span class="linenos">19</span></a><span class="sd">            return anp.exp(-x ** 2) - d</span>
+</span><span id="L-20"><a href="#L-20"><span class="linenos">20</span></a><span class="sd">        ```</span>
+</span><span id="L-21"><a href="#L-21"><span class="linenos">21</span></a><span class="sd">    guess : float</span>
+</span><span id="L-22"><a href="#L-22"><span class="linenos">22</span></a><span class="sd">        Initial guess for the minimization.</span>
+</span><span id="L-23"><a href="#L-23"><span class="linenos">23</span></a>
+</span><span id="L-24"><a href="#L-24"><span class="linenos">24</span></a><span class="sd">    Returns</span>
+</span><span id="L-25"><a href="#L-25"><span class="linenos">25</span></a><span class="sd">    -------</span>
+</span><span id="L-26"><a href="#L-26"><span class="linenos">26</span></a><span class="sd">    Obs</span>
+</span><span id="L-27"><a href="#L-27"><span class="linenos">27</span></a><span class="sd">        `Obs` valued root of the function.</span>
+</span><span id="L-28"><a href="#L-28"><span class="linenos">28</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="L-29"><a href="#L-29"><span class="linenos">29</span></a>    <span class="n">root</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">fsolve</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="p">,</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-30"><a href="#L-30"><span class="linenos">30</span></a>
+</span><span id="L-31"><a href="#L-31"><span class="linenos">31</span></a>    <span class="c1"># Error propagation as detailed in arXiv:1809.01289</span>
+</span><span id="L-32"><a href="#L-32"><span class="linenos">32</span></a>    <span class="n">dx</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="L-33"><a href="#L-33"><span class="linenos">33</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="L-34"><a href="#L-34"><span class="linenos">34</span></a>        <span class="n">da</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">u</span><span class="p">,</span> <span class="n">v</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">u</span><span class="p">))(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="L-35"><a href="#L-35"><span class="linenos">35</span></a>    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
+</span><span id="L-36"><a href="#L-36"><span class="linenos">36</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within root functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="L-37"><a href="#L-37"><span class="linenos">37</span></a>    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span> <span class="n">da</span> <span class="o">/</span> <span class="n">dx</span>
+</span><span id="L-38"><a href="#L-38"><span class="linenos">38</span></a>
+</span><span id="L-39"><a href="#L-39"><span class="linenos">39</span></a>    <span class="n">res</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="n">d</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">deriv</span><span class="p">])</span>
+</span><span id="L-40"><a href="#L-40"><span class="linenos">40</span></a>    <span class="k">return</span> <span class="n">res</span>
+</span></pre></div>
 
         </details>
 
@@ -125,42 +125,42 @@
 
             <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">find_root</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
-    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Finds the root of the function func(x, d) where d is an `Obs`.</span>
-
-<span class="sd">    Parameters</span>
-<span class="sd">    -----------------</span>
-<span class="sd">    d : Obs</span>
-<span class="sd">        Obs passed to the function.</span>
-<span class="sd">    func : object</span>
-<span class="sd">        Function to be minimized. Any numpy functions have to use the autograd.numpy wrapper.</span>
-<span class="sd">        Example:</span>
-<span class="sd">        ```python</span>
-<span class="sd">        import autograd.numpy as anp</span>
-<span class="sd">        def root_func(x, d):</span>
-<span class="sd">            return anp.exp(-x ** 2) - d</span>
-<span class="sd">        ```</span>
-<span class="sd">    guess : float</span>
-<span class="sd">        Initial guess for the minimization.</span>
-
-<span class="sd">    Returns</span>
-<span class="sd">    -------</span>
-<span class="sd">    Obs</span>
-<span class="sd">        `Obs` valued root of the function.</span>
-<span class="sd">    &#39;&#39;&#39;</span>
-    <span class="n">root</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">fsolve</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="p">,</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-
-    <span class="c1"># Error propagation as detailed in arXiv:1809.01289</span>
-    <span class="n">dx</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
-    <span class="k">try</span><span class="p">:</span>
-        <span class="n">da</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">u</span><span class="p">,</span> <span class="n">v</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">u</span><span class="p">))(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
-    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
-        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within root functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
-    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span> <span class="n">da</span> <span class="o">/</span> <span class="n">dx</span>
-
-    <span class="n">res</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="n">d</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">deriv</span><span class="p">])</span>
-    <span class="k">return</span> <span class="n">res</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="find_root-7"><a href="#find_root-7"><span class="linenos"> 7</span></a><span class="k">def</span> <span class="nf">find_root</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+</span><span id="find_root-8"><a href="#find_root-8"><span class="linenos"> 8</span></a>    <span class="sa">r</span><span class="sd">&#39;&#39;&#39;Finds the root of the function func(x, d) where d is an `Obs`.</span>
+</span><span id="find_root-9"><a href="#find_root-9"><span class="linenos"> 9</span></a>
+</span><span id="find_root-10"><a href="#find_root-10"><span class="linenos">10</span></a><span class="sd">    Parameters</span>
+</span><span id="find_root-11"><a href="#find_root-11"><span class="linenos">11</span></a><span class="sd">    -----------------</span>
+</span><span id="find_root-12"><a href="#find_root-12"><span class="linenos">12</span></a><span class="sd">    d : Obs</span>
+</span><span id="find_root-13"><a href="#find_root-13"><span class="linenos">13</span></a><span class="sd">        Obs passed to the function.</span>
+</span><span id="find_root-14"><a href="#find_root-14"><span class="linenos">14</span></a><span class="sd">    func : object</span>
+</span><span id="find_root-15"><a href="#find_root-15"><span class="linenos">15</span></a><span class="sd">        Function to be minimized. Any numpy functions have to use the autograd.numpy wrapper.</span>
+</span><span id="find_root-16"><a href="#find_root-16"><span class="linenos">16</span></a><span class="sd">        Example:</span>
+</span><span id="find_root-17"><a href="#find_root-17"><span class="linenos">17</span></a><span class="sd">        ```python</span>
+</span><span id="find_root-18"><a href="#find_root-18"><span class="linenos">18</span></a><span class="sd">        import autograd.numpy as anp</span>
+</span><span id="find_root-19"><a href="#find_root-19"><span class="linenos">19</span></a><span class="sd">        def root_func(x, d):</span>
+</span><span id="find_root-20"><a href="#find_root-20"><span class="linenos">20</span></a><span class="sd">            return anp.exp(-x ** 2) - d</span>
+</span><span id="find_root-21"><a href="#find_root-21"><span class="linenos">21</span></a><span class="sd">        ```</span>
+</span><span id="find_root-22"><a href="#find_root-22"><span class="linenos">22</span></a><span class="sd">    guess : float</span>
+</span><span id="find_root-23"><a href="#find_root-23"><span class="linenos">23</span></a><span class="sd">        Initial guess for the minimization.</span>
+</span><span id="find_root-24"><a href="#find_root-24"><span class="linenos">24</span></a>
+</span><span id="find_root-25"><a href="#find_root-25"><span class="linenos">25</span></a><span class="sd">    Returns</span>
+</span><span id="find_root-26"><a href="#find_root-26"><span class="linenos">26</span></a><span class="sd">    -------</span>
+</span><span id="find_root-27"><a href="#find_root-27"><span class="linenos">27</span></a><span class="sd">    Obs</span>
+</span><span id="find_root-28"><a href="#find_root-28"><span class="linenos">28</span></a><span class="sd">        `Obs` valued root of the function.</span>
+</span><span id="find_root-29"><a href="#find_root-29"><span class="linenos">29</span></a><span class="sd">    &#39;&#39;&#39;</span>
+</span><span id="find_root-30"><a href="#find_root-30"><span class="linenos">30</span></a>    <span class="n">root</span> <span class="o">=</span> <span class="n">scipy</span><span class="o">.</span><span class="n">optimize</span><span class="o">.</span><span class="n">fsolve</span><span class="p">(</span><span class="n">func</span><span class="p">,</span> <span class="n">guess</span><span class="p">,</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="find_root-31"><a href="#find_root-31"><span class="linenos">31</span></a>
+</span><span id="find_root-32"><a href="#find_root-32"><span class="linenos">32</span></a>    <span class="c1"># Error propagation as detailed in arXiv:1809.01289</span>
+</span><span id="find_root-33"><a href="#find_root-33"><span class="linenos">33</span></a>    <span class="n">dx</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="n">func</span><span class="p">)(</span><span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">)</span>
+</span><span id="find_root-34"><a href="#find_root-34"><span class="linenos">34</span></a>    <span class="k">try</span><span class="p">:</span>
+</span><span id="find_root-35"><a href="#find_root-35"><span class="linenos">35</span></a>        <span class="n">da</span> <span class="o">=</span> <span class="n">jacobian</span><span class="p">(</span><span class="k">lambda</span> <span class="n">u</span><span class="p">,</span> <span class="n">v</span><span class="p">:</span> <span class="n">func</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">u</span><span class="p">))(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span><span class="p">,</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+</span><span id="find_root-36"><a href="#find_root-36"><span class="linenos">36</span></a>    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
+</span><span id="find_root-37"><a href="#find_root-37"><span class="linenos">37</span></a>        <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;It is required to use autograd.numpy instead of numpy within root functions, see the documentation for details.&quot;</span><span class="p">)</span> <span class="kn">from</span> <span class="bp">None</span>
+</span><span id="find_root-38"><a href="#find_root-38"><span class="linenos">38</span></a>    <span class="n">deriv</span> <span class="o">=</span> <span class="o">-</span> <span class="n">da</span> <span class="o">/</span> <span class="n">dx</span>
+</span><span id="find_root-39"><a href="#find_root-39"><span class="linenos">39</span></a>
+</span><span id="find_root-40"><a href="#find_root-40"><span class="linenos">40</span></a>    <span class="n">res</span> <span class="o">=</span> <span class="n">derived_observable</span><span class="p">(</span><span class="k">lambda</span> <span class="n">x</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">:</span> <span class="p">(</span><span class="n">x</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">/</span> <span class="p">(</span><span class="n">d</span><span class="o">.</span><span class="n">value</span> <span class="o">+</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">)</span> <span class="o">*</span> <span class="n">root</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="p">[</span><span class="n">d</span><span class="p">],</span> <span class="n">man_grad</span><span class="o">=</span><span class="p">[</span><span class="n">deriv</span><span class="p">])</span>
+</span><span id="find_root-41"><a href="#find_root-41"><span class="linenos">41</span></a>    <span class="k">return</span> <span class="n">res</span>
+</span></pre></div>
 
         </details>
 
diff --git a/docs/pyerrors/version.html b/docs/pyerrors/version.html
index b08a7db4..0d879af0 100644
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@@ -47,7 +47,7 @@
 
 
 
-        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev">
+        <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
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@@ -62,8 +62,8 @@
                 
                         <details>
             <summary>View Source</summary>
-            <div class="pdoc-code codehilite"><pre><span></span><span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;2.1.0+dev&quot;</span>
-</pre></div>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="L-0"><a href="#L-0"><span class="linenos">0</span></a><span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;2.1.0+dev&quot;</span>
+</span></pre></div>
 
         </details>
 
