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https://github.com/fjosw/pyerrors.git
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[Fix] Simplify type annotations in input modules
This commit is contained in:
Fabian Joswig
parent
b8700ef962
commit
6d5a9b9d83
3 changed files with 25 additions and 22 deletions
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@ -710,7 +710,7 @@ def total_least_squares(x: list[Obs], y: list[Obs], func: Callable, silent: bool
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return output
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def fit_lin(x: list[Union[Obs, int, float]], y: list[Obs], **kwargs) -> list[Obs]:
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def fit_lin(x: Sequence[Union[Obs, int, float]], y: Sequence[Obs], **kwargs) -> list[Obs]:
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"""Performs a linear fit to y = n + m * x and returns two Obs n, m.
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Parameters
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@ -18,9 +18,9 @@ from typing import Any, Optional, Union
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# Based on https://stackoverflow.com/a/10076823
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def _etree_to_dict(t: _Element) -> dict[str, Union[str, dict[str, str], dict[str, Union[str, dict[str, str]]]]]:
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def _etree_to_dict(t: _Element) -> dict:
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""" Convert the content of an XML file to a python dict"""
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d = {t.tag: {} if t.attrib else None}
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d: dict = {t.tag: {} if t.attrib else None}
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children = list(t)
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if children:
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dd = defaultdict(list)
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@ -70,7 +70,7 @@ def _dict_to_xmlstring(d: dict[str, Any]) -> str:
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return iters
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def _dict_to_xmlstring_spaces(d: dict[str, dict[str, dict[str, Union[str, dict[str, str], list[dict[str, str]]]]]], space: str=' ') -> str:
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def _dict_to_xmlstring_spaces(d: dict, space: str=' ') -> str:
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s = _dict_to_xmlstring(d)
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o = ''
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c = 0
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@ -89,7 +89,7 @@ def _dict_to_xmlstring_spaces(d: dict[str, dict[str, dict[str, Union[str, dict[s
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return o
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def create_pobs_string(obsl: list[Obs], name: str, spec: str='', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, enstag: None=None) -> str:
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def create_pobs_string(obsl: list[Obs], name: str, spec: str='', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, enstag: Optional[str]=None) -> str:
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"""Export a list of Obs or structures containing Obs to an xml string
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according to the Zeuthen pobs format.
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@ -119,7 +119,7 @@ def create_pobs_string(obsl: list[Obs], name: str, spec: str='', origin: str='',
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if symbol is None:
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symbol = []
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od = {}
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od: dict[str, Any] = {}
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ename = obsl[0].e_names[0]
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names = list(obsl[0].deltas.keys())
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nr = len(names)
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@ -182,7 +182,7 @@ def create_pobs_string(obsl: list[Obs], name: str, spec: str='', origin: str='',
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return rs
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def write_pobs(obsl: list[Obs], fname: str, name: str, spec: str='', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, enstag: None=None, gz: bool=True):
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def write_pobs(obsl: list[Obs], fname: str, name: str, spec: str='', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, enstag: Optional[str]=None, gz: bool=True):
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"""Export a list of Obs or structures containing Obs to a .xml.gz file
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according to the Zeuthen pobs format.
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@ -223,12 +223,13 @@ def write_pobs(obsl: list[Obs], fname: str, name: str, spec: str='', origin: str
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if not fname.endswith('.gz'):
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fname += '.gz'
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fp = gzip.open(fname, 'wb')
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fp.write(pobsstring.encode('utf-8'))
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gp = gzip.open(fname, 'wb')
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gp.write(pobsstring.encode('utf-8'))
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gp.close()
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else:
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fp = open(fname, 'w', encoding='utf-8')
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fp.write(pobsstring)
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fp.close()
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fp.close()
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def _import_data(string: str) -> list[Union[int, float]]:
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@ -305,7 +306,7 @@ def _import_cdata(cd: _Element) -> tuple[str, ndarray, ndarray]:
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return cd[0].text.strip(), cov, grad
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def read_pobs(fname: str, full_output: bool=False, gz: bool=True, separator_insertion: None=None) -> Union[dict[str, Union[str, dict[str, str], list[Obs]]], list[Obs]]:
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def read_pobs(fname: str, full_output: bool=False, gz: bool=True, separator_insertion: None=None) -> Union[dict, list[Obs]]:
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"""Import a list of Obs from an xml.gz file in the Zeuthen pobs format.
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Tags are not written or recovered automatically.
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@ -358,7 +359,7 @@ def read_pobs(fname: str, full_output: bool=False, gz: bool=True, separator_inse
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deltas = []
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names = []
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idl = []
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idl: list[list[int]] = []
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for i in range(5, len(pobs)):
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delta, name, idx = _import_rdata(pobs[i])
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deltas.append(delta)
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@ -405,7 +406,7 @@ def read_pobs(fname: str, full_output: bool=False, gz: bool=True, separator_inse
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# this is based on Mattia Bruno's implementation at https://github.com/mbruno46/pyobs/blob/master/pyobs/IO/xml.py
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def import_dobs_string(content: bytes, full_output: bool=False, separator_insertion: bool=True) -> Union[dict[str, Union[str, dict[str, str], list[Obs]]], list[Obs]]:
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def import_dobs_string(content: bytes, full_output: bool=False, separator_insertion: bool=True) -> Union[dict, list[Obs]]:
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"""Import a list of Obs from a string in the Zeuthen dobs format.
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Tags are not written or recovered automatically.
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@ -579,7 +580,7 @@ def import_dobs_string(content: bytes, full_output: bool=False, separator_insert
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return res
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def read_dobs(fname: str, full_output: bool=False, gz: bool=True, separator_insertion: bool=True) -> Union[dict[str, Union[str, dict[str, str], list[Obs]]], list[Obs]]:
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def read_dobs(fname: str, full_output: bool=False, gz: bool=True, separator_insertion: bool=True) -> Union[dict, list[Obs]]:
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"""Import a list of Obs from an xml.gz file in the Zeuthen dobs format.
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Tags are not written or recovered automatically.
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@ -666,7 +667,7 @@ def _dobsdict_to_xmlstring(d: dict[str, Any]) -> str:
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return iters
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def _dobsdict_to_xmlstring_spaces(d: dict[str, Union[dict[str, Union[dict[str, str], dict[str, Union[str, dict[str, str]]], dict[str, Union[str, dict[str, Union[str, list[str]]], list[dict[str, Union[str, int, list[dict[str, str]]]]]]]]], dict[str, Union[dict[str, str], dict[str, Union[str, dict[str, str]]], dict[str, Union[str, dict[str, Union[str, list[str]]], list[dict[str, Union[str, int, list[dict[str, str]]]]], list[dict[str, Union[str, list[dict[str, str]]]]]]]]]]], space: str=' ') -> str:
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def _dobsdict_to_xmlstring_spaces(d: dict, space: str=' ') -> str:
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s = _dobsdict_to_xmlstring(d)
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o = ''
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c = 0
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@ -685,7 +686,7 @@ def _dobsdict_to_xmlstring_spaces(d: dict[str, Union[dict[str, Union[dict[str, s
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return o
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def create_dobs_string(obsl: list[Obs], name: str, spec: str='dobs v1.0', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, who: None=None, enstags: Optional[dict[Any, Any]]=None) -> str:
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def create_dobs_string(obsl: list[Obs], name: str, spec: str='dobs v1.0', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, who: Optional[str]=None, enstags: Optional[dict]=None) -> str:
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"""Generate the string for the export of a list of Obs or structures containing Obs
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to a .xml.gz file according to the Zeuthen dobs format.
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@ -876,7 +877,7 @@ def create_dobs_string(obsl: list[Obs], name: str, spec: str='dobs v1.0', origin
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return rs
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def write_dobs(obsl: list[Obs], fname: str, name: str, spec: str='dobs v1.0', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, who: None=None, enstags: None=None, gz: bool=True):
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def write_dobs(obsl: list[Obs], fname: str, name: str, spec: str='dobs v1.0', origin: str='', symbol: Optional[list[Union[str, Any]]]=None, who: Optional[str]=None, enstags: Optional[dict]=None, gz: bool=True):
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"""Export a list of Obs or structures containing Obs to a .xml.gz file
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according to the Zeuthen dobs format.
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@ -78,7 +78,7 @@ def read_sfcf(path: str, prefix: str, name: str, quarks: str='.*', corr_type: st
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return ret[name][quarks][str(noffset)][str(wf)][str(wf2)]
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def read_sfcf_multi(path: str, prefix: str, name_list: list[str], quarks_list: list[str]=['.*'], corr_type_list: list[str]=['bi'], noffset_list: list[int]=[0], wf_list: list[int]=[0], wf2_list: list[int]=[0], version: str="1.0c", cfg_separator: str="n", silent: bool=False, keyed_out: bool=False, **kwargs) -> dict[str, dict[str, dict[str, dict[str, dict[str, list[Obs]]]]]]:
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def read_sfcf_multi(path: str, prefix: str, name_list: list[str], quarks_list: list[str]=['.*'], corr_type_list: list[str]=['bi'], noffset_list: list[int]=[0], wf_list: list[int]=[0], wf2_list: list[int]=[0], version: str="1.0c", cfg_separator: str="n", silent: bool=False, keyed_out: bool=False, **kwargs) -> dict:
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"""Read sfcf files from given folder structure.
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Parameters
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@ -425,7 +425,7 @@ def _specs2key(*specs) -> str:
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return sep.join(specs)
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def _read_o_file(cfg_path: str, name: str, needed_keys: list[str], intern: dict[str, dict[str, Union[bool, dict[str, dict[str, dict[str, dict[str, dict[str, Union[int, str]]]]]], int]]], version: str, im: int) -> dict[str, list[float]]:
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def _read_o_file(cfg_path: str, name: str, needed_keys: list[str], intern: dict[str, dict], version: str, im: int) -> dict[str, list[float]]:
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return_vals = {}
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for key in needed_keys:
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file = cfg_path + '/' + name
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@ -463,7 +463,9 @@ def _extract_corr_type(corr_type: str) -> tuple[bool, bool]:
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return b2b, single
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def _find_files(rep_path: str, prefix: str, compact: bool, files: list[Union[range, str, Any]]=[]) -> list[str]:
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def _find_files(rep_path: str, prefix: str, compact: bool, files: Optional[list]=None) -> list[str]:
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if files is None:
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files = []
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sub_ls = []
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if not files == []:
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files.sort(key=lambda x: int(re.findall(r'\d+', x)[-1]))
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@ -530,7 +532,7 @@ def _find_correlator(file_name: str, version: str, pattern: str, b2b: bool, sile
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return start_read, T
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def _read_compact_file(rep_path: str, cfg_file: str, intern: dict[str, dict[str, Union[bool, dict[str, dict[str, dict[str, dict[str, dict[str, Union[int, str]]]]]], int]]], needed_keys: list[str], im: int) -> dict[str, list[float]]:
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def _read_compact_file(rep_path: str, cfg_file: str, intern: dict[str, dict], needed_keys: list[str], im: int) -> dict[str, list[float]]:
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return_vals = {}
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with open(rep_path + cfg_file) as fp:
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lines = fp.readlines()
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@ -561,7 +563,7 @@ def _read_compact_file(rep_path: str, cfg_file: str, intern: dict[str, dict[str,
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return return_vals
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def _read_compact_rep(path: str, rep: str, sub_ls: list[str], intern: dict[str, dict[str, Union[bool, dict[str, dict[str, dict[str, dict[str, dict[str, Union[int, str]]]]]], int]]], needed_keys: list[str], im: int) -> dict[str, list[ndarray]]:
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def _read_compact_rep(path: str, rep: str, sub_ls: list[str], intern: dict[str, dict], needed_keys: list[str], im: int) -> dict[str, list[ndarray]]:
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rep_path = path + '/' + rep + '/'
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no_cfg = len(sub_ls)
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