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Merge branch 'develop' into documentation

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fjosw 2022-04-19 12:09:57 +00:00
commit 5a67a1184a
1 changed files with 16 additions and 8 deletions
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16
pyerrors/input/bdio.py
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@ -436,7 +436,7 @@ def read_mesons(file_path, bdio_path='./libbdio.so', **kwargs):
if cnfg_no > kwargs.get('stop'): if cnfg_no > kwargs.get('stop'):
break break
idl.append(cnfg_no) idl.append(cnfg_no)
print('\r%s %i' % ('Reading configuration', cnfg_no + 1), end='\r') print('\r%s %i' % ('Reading configuration', cnfg_no), end='\r')
if len(idl) == 1: if len(idl) == 1:
no_corrs = len(corr_name) no_corrs = len(corr_name)
data = [] data = []
@ -470,18 +470,26 @@ def read_mesons(file_path, bdio_path='./libbdio.so', **kwargs):
if stop is None: if stop is None:
stop = idl[-1] stop = idl[-1]
idl_target = range(start, stop + 1, step) idl_target = range(start, stop + 1, step)
if set(idl) != set(idl_target):
try: try:
indices = [idl.index(i) for i in idl_target] indices = [idl.index(i) for i in idl_target]
except ValueError as err: except ValueError as err:
raise Exception('Configurations in file do no match target list!', err) raise Exception('Configurations in file do no match target list!', err)
else:
indices = None
result = {} result = {}
for c in range(no_corrs): for c in range(no_corrs):
tmp_corr = [] tmp_corr = []
tmp_data = np.asarray(data[c])
for t in range(d0 - 2): for t in range(d0 - 2):
deltas = [np.asarray(data[c])[:, t][index] for index in indices] if indices:
deltas = [tmp_data[:, t][index] for index in indices]
else:
deltas = tmp_data[:, t]
tmp_corr.append(Obs([deltas], [ensemble_name], idl=[idl_target])) tmp_corr.append(Obs([deltas], [ensemble_name], idl=[idl_target]))
result[(corr_name[c], corr_source[c]) + tuple(sorted(corr_kappa[c]))] = tmp_corr result[(corr_name[c], corr_source[c]) + tuple(corr_kappa[c])] = tmp_corr
# Check that all data entries have the same number of configurations # Check that all data entries have the same number of configurations
if len(set([o[0].N for o in list(result.values())])) != 1: if len(set([o[0].N for o in list(result.values())])) != 1:
@ -629,7 +637,7 @@ def read_dSdm(file_path, bdio_path='./libbdio.so', **kwargs):
if cnfg_no > kwargs.get('stop'): if cnfg_no > kwargs.get('stop'):
break break
idl.append(cnfg_no) idl.append(cnfg_no)
print('\r%s %i' % ('Reading configuration', cnfg_no + 1), end='\r') print('\r%s %i' % ('Reading configuration', cnfg_no), end='\r')
if len(idl) == 1: if len(idl) == 1:
no_corrs = len(corr_name) no_corrs = len(corr_name)
data = [] data = []