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refactor: comments removed in input/openQCD, typo corrected
This commit is contained in:
Fabian Joswig
parent
f8cbaef626
commit
5993f1a4ba
1 changed files with 1 additions and 32 deletions
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@ -1,6 +1,3 @@
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#!/usr/bin/env python
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# coding: utf-8
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import os
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import fnmatch
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import re
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@ -42,7 +39,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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if 'files' in kwargs:
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ls = kwargs.get('files')
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else:
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# Exclude files with different names
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for exc in ls:
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if not fnmatch.fnmatch(exc, prefix + '*' + postfix + '.dat'):
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ls = list(set(ls) - set([exc]))
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@ -69,7 +65,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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print('Read reweighting factors from', prefix[:-1], ',',
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replica, 'replica', end='')
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# Adjust replica names to new bookmarking system
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if names is None:
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rep_names = []
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for entry in ls:
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@ -88,7 +83,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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tmp_array = []
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with open(path + '/' + ls[rep], 'rb') as fp:
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# header
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t = fp.read(4) # number of reweighting factors
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if rep == 0:
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nrw = struct.unpack('i', t)[0]
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@ -97,7 +91,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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for k in range(nrw):
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deltas.append([])
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else:
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# little weird if-clause due to the /2 operation needed.
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if ((nrw != struct.unpack('i', t)[0] and (not version == '2.0')) or (nrw != struct.unpack('i', t)[0] / 2 and version == '2.0')):
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raise Exception('Error: different number of reweighting factors for replicum', rep)
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@ -110,8 +103,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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for i in range(nrw):
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t = fp.read(4)
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nfct.append(struct.unpack('i', t)[0])
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# print('nfct: ', nfct) # Hasenbusch factor,
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# 1 for rat reweighting
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else:
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for i in range(nrw):
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nfct.append(1)
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@ -124,7 +115,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
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if not struct.unpack('i', fp.read(4))[0] == 0:
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print('something is wrong!')
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# body
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while 0 < 1:
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t = fp.read(4)
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if len(t) < 4:
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@ -220,7 +210,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
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if not ls:
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raise Exception('Error, directory not found')
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# Exclude files with different names
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for exc in ls:
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if not fnmatch.fnmatch(exc, prefix + '*.ms.dat'):
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ls = list(set(ls) - set([exc]))
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@ -232,7 +221,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
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r_start = kwargs.get('r_start')
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if len(r_start) != replica:
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raise Exception('r_start does not match number of replicas')
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# Adjust Configuration numbering to python index
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r_start = [o - 1 if o else None for o in r_start]
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else:
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r_start = [None] * replica
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@ -251,7 +239,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
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for rep in range(replica):
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with open(path + '/' + ls[rep], 'rb') as fp:
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# Read header
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t = fp.read(12)
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header = struct.unpack('iii', t)
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if rep == 0:
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@ -270,7 +257,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
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Ysl = []
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# Read body
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while 0 < 1:
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t = fp.read(4)
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if(len(t) < 4):
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@ -334,12 +320,6 @@ def _parse_array_openQCD2(d, n, size, wa, quadrupel=False):
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return arr
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# mimic the read_array routine of openQCD-2.0.
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# fp is the opened file handle
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# returns the dict array
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# at this point we only parse a 2d array
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# d = 2
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# n = [nfct[irw], 2*nsrc[irw]]
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def _read_array_openQCD2(fp):
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t = fp.read(4)
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d = struct.unpack('i', t)[0]
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@ -400,13 +380,11 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
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last configurations that need to be read (per replicum)
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files: list
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specify the exact files that need to be read
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from path, pratical if e.g. only one replicum is needed
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from path, practical if e.g. only one replicum is needed
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names: list
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Alternative labeling for replicas/ensembles.
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Has to have the appropriate length
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"""
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# one could read L from the header in case of sfQCD
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# c = 0.35
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known_versions = ["1.0", "1.2", "1.4", "1.6", "2.0", "sfqcd"]
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if version not in known_versions:
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@ -426,11 +404,9 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
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r_start = kwargs.get("r_start")
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if "r_stop" in kwargs:
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r_stop = kwargs.get("r_stop")
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# if one wants to read specific files with this method...
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if "files" in kwargs:
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files = kwargs.get("files")
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else:
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# find files in path
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found = []
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files = []
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for (dirpath, dirnames, filenames) in os.walk(path + "/"):
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@ -441,14 +417,12 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
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if fnmatch.fnmatch(f, prefix + "*" + ".ms.dat"):
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files.append(f)
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print(files)
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# now that we found our files, we dechiffer them...
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rep_names = []
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deltas = []
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idl = []
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for rep, file in enumerate(files):
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with open(path + "/" + file, "rb") as fp:
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# header
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t = fp.read(12)
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header = struct.unpack('<iii', t)
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# step size in integration steps "dnms"
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@ -477,7 +451,6 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
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Q = []
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ncs = []
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while 0 < 1:
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# int nt
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t = fp.read(4)
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if(len(t) < 4):
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break
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@ -524,8 +497,6 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
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if len(Q_round) != len(ncs) // dtr_cnfg:
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raise Exception("qtops and ncs dont have the same length")
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# replica = len(files)
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truncated_file = file[:-7]
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print(truncated_file)
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idl_start = 1
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@ -553,7 +524,6 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
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rep_names = names
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deltas.append(np.array(Q_round))
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idl.append(range(idl_start, idl_stop))
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# print(idl)
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result = Obs(deltas, rep_names, idl=idl)
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return result
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@ -594,7 +564,6 @@ def read_qtop_sector(target=0, **kwargs):
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dtr_cnfg = 1
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qtop = read_qtop(path, prefix, c, dtr_cnfg=dtr_cnfg,
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version=version, **kwargs)
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# unpack to original values, project onto target sector
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names = qtop.names
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print(names)
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print(qtop.deltas.keys())
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