mirror of
https://github.com/fjosw/pyerrors.git
synced 2025-03-15 06:40:24 +01:00
refactor: comments removed in input/openQCD, typo corrected
This commit is contained in:
Fabian Joswig
parent
f8cbaef626
commit
5993f1a4ba
1 changed files with 1 additions and 32 deletions
|
|
@ -1,6 +1,3 @@
|
|||
#!/usr/bin/env python
|
||||
# coding: utf-8
|
||||
|
||||
import os
|
||||
import fnmatch
|
||||
import re
|
||||
|
|
@ -42,7 +39,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
|
|||
if 'files' in kwargs:
|
||||
ls = kwargs.get('files')
|
||||
else:
|
||||
# Exclude files with different names
|
||||
for exc in ls:
|
||||
if not fnmatch.fnmatch(exc, prefix + '*' + postfix + '.dat'):
|
||||
ls = list(set(ls) - set([exc]))
|
||||
|
|
@ -69,7 +65,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
|
|||
print('Read reweighting factors from', prefix[:-1], ',',
|
||||
replica, 'replica', end='')
|
||||
|
||||
# Adjust replica names to new bookmarking system
|
||||
if names is None:
|
||||
rep_names = []
|
||||
for entry in ls:
|
||||
|
|
@ -88,7 +83,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
|
|||
tmp_array = []
|
||||
with open(path + '/' + ls[rep], 'rb') as fp:
|
||||
|
||||
# header
|
||||
t = fp.read(4) # number of reweighting factors
|
||||
if rep == 0:
|
||||
nrw = struct.unpack('i', t)[0]
|
||||
|
|
@ -97,7 +91,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
|
|||
for k in range(nrw):
|
||||
deltas.append([])
|
||||
else:
|
||||
# little weird if-clause due to the /2 operation needed.
|
||||
if ((nrw != struct.unpack('i', t)[0] and (not version == '2.0')) or (nrw != struct.unpack('i', t)[0] / 2 and version == '2.0')):
|
||||
raise Exception('Error: different number of reweighting factors for replicum', rep)
|
||||
|
||||
|
|
@ -110,8 +103,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
|
|||
for i in range(nrw):
|
||||
t = fp.read(4)
|
||||
nfct.append(struct.unpack('i', t)[0])
|
||||
# print('nfct: ', nfct) # Hasenbusch factor,
|
||||
# 1 for rat reweighting
|
||||
else:
|
||||
for i in range(nrw):
|
||||
nfct.append(1)
|
||||
|
|
@ -124,7 +115,6 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
|
|||
if not struct.unpack('i', fp.read(4))[0] == 0:
|
||||
print('something is wrong!')
|
||||
|
||||
# body
|
||||
while 0 < 1:
|
||||
t = fp.read(4)
|
||||
if len(t) < 4:
|
||||
|
|
@ -220,7 +210,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
|
|||
if not ls:
|
||||
raise Exception('Error, directory not found')
|
||||
|
||||
# Exclude files with different names
|
||||
for exc in ls:
|
||||
if not fnmatch.fnmatch(exc, prefix + '*.ms.dat'):
|
||||
ls = list(set(ls) - set([exc]))
|
||||
|
|
@ -232,7 +221,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
|
|||
r_start = kwargs.get('r_start')
|
||||
if len(r_start) != replica:
|
||||
raise Exception('r_start does not match number of replicas')
|
||||
# Adjust Configuration numbering to python index
|
||||
r_start = [o - 1 if o else None for o in r_start]
|
||||
else:
|
||||
r_start = [None] * replica
|
||||
|
|
@ -251,7 +239,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
|
|||
for rep in range(replica):
|
||||
|
||||
with open(path + '/' + ls[rep], 'rb') as fp:
|
||||
# Read header
|
||||
t = fp.read(12)
|
||||
header = struct.unpack('iii', t)
|
||||
if rep == 0:
|
||||
|
|
@ -270,7 +257,6 @@ def extract_t0(path, prefix, dtr_read, xmin,
|
|||
|
||||
Ysl = []
|
||||
|
||||
# Read body
|
||||
while 0 < 1:
|
||||
t = fp.read(4)
|
||||
if(len(t) < 4):
|
||||
|
|
@ -334,12 +320,6 @@ def _parse_array_openQCD2(d, n, size, wa, quadrupel=False):
|
|||
return arr
|
||||
|
||||
|
||||
# mimic the read_array routine of openQCD-2.0.
|
||||
# fp is the opened file handle
|
||||
# returns the dict array
|
||||
# at this point we only parse a 2d array
|
||||
# d = 2
|
||||
# n = [nfct[irw], 2*nsrc[irw]]
|
||||
def _read_array_openQCD2(fp):
|
||||
t = fp.read(4)
|
||||
d = struct.unpack('i', t)[0]
|
||||
|
|
@ -400,13 +380,11 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
|
|||
last configurations that need to be read (per replicum)
|
||||
files: list
|
||||
specify the exact files that need to be read
|
||||
from path, pratical if e.g. only one replicum is needed
|
||||
from path, practical if e.g. only one replicum is needed
|
||||
names: list
|
||||
Alternative labeling for replicas/ensembles.
|
||||
Has to have the appropriate length
|
||||
"""
|
||||
# one could read L from the header in case of sfQCD
|
||||
# c = 0.35
|
||||
known_versions = ["1.0", "1.2", "1.4", "1.6", "2.0", "sfqcd"]
|
||||
|
||||
if version not in known_versions:
|
||||
|
|
@ -426,11 +404,9 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
|
|||
r_start = kwargs.get("r_start")
|
||||
if "r_stop" in kwargs:
|
||||
r_stop = kwargs.get("r_stop")
|
||||
# if one wants to read specific files with this method...
|
||||
if "files" in kwargs:
|
||||
files = kwargs.get("files")
|
||||
else:
|
||||
# find files in path
|
||||
found = []
|
||||
files = []
|
||||
for (dirpath, dirnames, filenames) in os.walk(path + "/"):
|
||||
|
|
@ -441,14 +417,12 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
|
|||
if fnmatch.fnmatch(f, prefix + "*" + ".ms.dat"):
|
||||
files.append(f)
|
||||
print(files)
|
||||
# now that we found our files, we dechiffer them...
|
||||
rep_names = []
|
||||
|
||||
deltas = []
|
||||
idl = []
|
||||
for rep, file in enumerate(files):
|
||||
with open(path + "/" + file, "rb") as fp:
|
||||
# header
|
||||
t = fp.read(12)
|
||||
header = struct.unpack('<iii', t)
|
||||
# step size in integration steps "dnms"
|
||||
|
|
@ -477,7 +451,6 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
|
|||
Q = []
|
||||
ncs = []
|
||||
while 0 < 1:
|
||||
# int nt
|
||||
t = fp.read(4)
|
||||
if(len(t) < 4):
|
||||
break
|
||||
|
|
@ -524,8 +497,6 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
|
|||
if len(Q_round) != len(ncs) // dtr_cnfg:
|
||||
raise Exception("qtops and ncs dont have the same length")
|
||||
|
||||
# replica = len(files)
|
||||
|
||||
truncated_file = file[:-7]
|
||||
print(truncated_file)
|
||||
idl_start = 1
|
||||
|
|
@ -553,7 +524,6 @@ def read_qtop(path, prefix, c, dtr_cnfg=1, version="1.2", **kwargs):
|
|||
rep_names = names
|
||||
deltas.append(np.array(Q_round))
|
||||
idl.append(range(idl_start, idl_stop))
|
||||
# print(idl)
|
||||
result = Obs(deltas, rep_names, idl=idl)
|
||||
return result
|
||||
|
||||
|
|
@ -594,7 +564,6 @@ def read_qtop_sector(target=0, **kwargs):
|
|||
dtr_cnfg = 1
|
||||
qtop = read_qtop(path, prefix, c, dtr_cnfg=dtr_cnfg,
|
||||
version=version, **kwargs)
|
||||
# unpack to original values, project onto target sector
|
||||
names = qtop.names
|
||||
print(names)
|
||||
print(qtop.deltas.keys())
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue