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Merge pull request #56 from jkuhl-uni/feature/input_2.0

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Feature/input 2.0
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Fabian Joswig 2022-02-08 13:37:32 +00:00 • committed by GitHub
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32 changed files with 10352 additions and 111 deletions
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230
data/sfcf_test/data_o/test_r0/cfg2/F_V0 Normal file
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194
data/sfcf_test/data_o/test_r0/cfg3/f_1 Normal file
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80
data/sfcf_test/data_o/test_r0/cfg3/f_A Normal file
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[run]
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230
data/sfcf_test/data_o/test_r0/cfg4/F_V0 Normal file
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[run]
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194
data/sfcf_test/data_o/test_r0/cfg4/f_1 Normal file
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[run]
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80
data/sfcf_test/data_o/test_r0/cfg4/f_A Normal file
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@ -0,0 +1,80 @@
[run]
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230
data/sfcf_test/data_o/test_r0/cfg5/F_V0 Normal file
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[run]
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194
data/sfcf_test/data_o/test_r0/cfg5/f_1 Normal file
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[run]
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80
data/sfcf_test/data_o/test_r0/cfg5/f_A Normal file
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230
data/sfcf_test/data_o/test_r1/cfg1/F_V0 Normal file
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[run]
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194
data/sfcf_test/data_o/test_r1/cfg1/f_1 Normal file
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[run]
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80
data/sfcf_test/data_o/test_r1/cfg1/f_A Normal file
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3 -4.1025142768037739e+01 +5.9315333178954509e-17

230
data/sfcf_test/data_o/test_r2/cfg1/F_V0 Normal file
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@ -0,0 +1,230 @@
[run]
version 2.1
date 2022-01-19 11:04:00 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /unity
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_oF_V0
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 0
wf_2 0
corr_t
1 +6.8367760900851147e+02 +3.0531839956225539e-10
2 +6.6131885855823339e+02 +3.9736225045852382e-12
3 +6.8367760900810049e+02 -2.5611665964422843e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 0
wf_2 1
corr_t
1 +6.8370283168793060e+02 +3.0532966356282939e-10
2 +6.6134325636407561e+02 +3.9737690976212336e-12
3 +6.8370283168751973e+02 -2.5612610847134760e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 0
wf_2 2
corr_t
1 +6.8370484437212463e+02 +3.0533056232915147e-10
2 +6.6134520322615822e+02 +3.9737807346122766e-12
3 +6.8370484437171353e+02 -2.5612686251836130e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 1
wf_2 0
corr_t
1 +6.8370283168792889e+02 +3.0532890521977295e-10
2 +6.6134325636407402e+02 +3.9730355551484655e-12
3 +6.8370283168751791e+02 -2.5612686681440218e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 1
wf_2 1
corr_t
1 +6.8372805529787934e+02 +3.0534016954586185e-10
2 +6.6136765507001564e+02 +3.9731820664935325e-12
3 +6.8372805529746825e+02 -2.5613631608015786e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 1
wf_2 2
corr_t
1 +6.8373006805632656e+02 +3.0534106842445933e-10
2 +6.6136960200392332e+02 +3.9731937804440792e-12
3 +6.8373006805591558e+02 -2.5613707007587266e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 2
wf_2 0
corr_t
1 +6.8370484437212156e+02 +3.0532220084664646e-10
2 +6.6134520322615526e+02 +3.9656927030717790e-12
3 +6.8370484437171069e+02 -2.5613522400086377e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 2
wf_2 1
corr_t
1 +6.8373006805632599e+02 +3.0533346499198999e-10
2 +6.6136960200392275e+02 +3.9658390079382195e-12
3 +6.8373006805591490e+02 -2.5614467350834153e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 2
wf_2 2
corr_t
1 +6.8373208082069789e+02 +3.0533436384459901e-10
2 +6.6137154894356127e+02 +3.9658506942251639e-12
3 +6.8373208082028680e+02 -2.5614542753491032e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 0
corr_t
1 +6.8367760900918211e+02 -9.5149222536505804e-10
2 +6.6131885855810310e+02 +3.2960434859595585e-10
3 +6.8367760900806934e+02 -2.3744430846347533e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 1
corr_t
1 +6.8370283168860135e+02 -9.5152732859532533e-10
2 +6.6134325636394544e+02 +3.2961650841969937e-10
3 +6.8370283168748858e+02 -2.3745306857315358e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 2
corr_t
1 +6.8370484437279526e+02 -9.5153012965274573e-10
2 +6.6134520322602793e+02 +3.2961747879154288e-10
3 +6.8370484437168250e+02 -2.3745376753897864e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 0
corr_t
1 +6.8370283168859953e+02 -9.5151770701795658e-10
2 +6.6134325636394351e+02 +3.2962581533640458e-10
3 +6.8370283168748665e+02 -2.3744344699578737e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 1
corr_t
1 +6.8372805529855032e+02 -9.5155281099707234e-10
2 +6.6136765506988547e+02 +3.2963797613709602e-10
3 +6.8372805529743755e+02 -2.3745220688244645e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 2
corr_t
1 +6.8373006805699742e+02 -9.5155561220425917e-10
2 +6.6136960200379315e+02 +3.2963894649982994e-10
3 +6.8373006805588454e+02 -2.3745290592048597e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 0
corr_t
1 +6.8370484437279174e+02 -9.5153224647433932e-10
2 +6.6134520322602452e+02 +3.2961543119772646e-10
3 +6.8370484437167897e+02 -2.3745588436057620e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 1
corr_t
1 +6.8373006805699617e+02 -9.5156735103669992e-10
2 +6.6136960200379178e+02 +3.2962759157000606e-10
3 +6.8373006805588329e+02 -2.3746464475292832e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 2
corr_t
1 +6.8373208082136819e+02 -9.5157015223999714e-10
2 +6.6137154894343041e+02 +3.2962856194733528e-10
3 +6.8373208082025531e+02 -2.3746534378088984e-10

194
data/sfcf_test/data_o/test_r2/cfg1/f_1 Normal file
View file

@ -0,0 +1,194 @@
[run]
version 2.1
date 2022-01-19 11:04:00 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /unity
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_of_1
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 0
wf_2 0
corr
+3.5119415254545021e+02 +6.7620978057264750e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 0
wf_2 1
corr
+3.5120703575855339e+02 +6.5026340956203663e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 0
wf_2 2
corr
+3.5120808902177868e+02 +6.5443496235264788e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 1
wf_2 0
corr
+3.5120703575855515e+02 +6.9706500417651470e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 1
wf_2 1
corr
+3.5122001235609065e+02 +6.9516150897757419e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 1
wf_2 2
corr
+3.5122104108046199e+02 +6.9232860455434941e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 2
wf_2 0
corr
+3.5120808902177447e+02 +1.0849949614595719e-14
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 2
wf_2 1
corr
+3.5122104108046182e+02 +1.0866063643253473e-14
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 2
wf_2 2
corr
+3.5122207631098047e+02 +1.0827277318679030e-14
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
wf_2 0
corr
+3.5119415254545038e+02 +3.0143306723935508e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
wf_2 1
corr
+3.5120703575855367e+02 +4.3340379505972648e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
wf_2 2
corr
+3.5120808902177902e+02 +3.9652247575094006e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 0
corr
+3.5120703575855526e+02 -8.2540994138261318e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 1
corr
+3.5122001235609082e+02 -9.7121215247039609e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 2
corr
+3.5122104108046227e+02 -9.0872484903683497e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 0
corr
+3.5120808902177453e+02 +5.1331372776616026e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 1
corr
+3.5122104108046193e+02 +5.0816653044831932e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 2
corr
+3.5122207631098064e+02 +5.1165649253001659e-15

80
data/sfcf_test/data_o/test_r2/cfg1/f_A Normal file
View file

@ -0,0 +1,80 @@
[run]
version 2.1
date 2022-01-19 11:04:00 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /unity
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_of_A
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 0
corr_t
1 +6.5471188727972304e+01 -6.1214214711790100e-12
2 +1.0447210336915187e+00 +8.9219487930753188e-13
3 -4.1025094911185178e+01 -4.8315634170546161e-14
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 1
corr_t
1 +6.5551520722862705e+01 +2.0963356863957609e-13
2 +1.0542820240851569e+00 +2.3989756974599379e-15
3 -4.1024441815729936e+01 -5.7107484666182308e-15
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 2
corr_t
1 +6.5529951269442847e+01 -6.6512260271334321e-14
2 +1.0516822345055969e+00 -2.2935262162529075e-15
3 -4.1025142768037746e+01 +3.7566377680004518e-16
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 0
corr_t
1 +6.5471188727965909e+01 -1.6112786177915427e-11
2 +1.0447210337411881e+00 -7.0387528705692678e-13
3 -4.1025094911167137e+01 +4.6509152745618223e-13
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 1
corr_t
1 +6.5551520722842213e+01 -8.1976426690345305e-13
2 +1.0542820240843382e+00 +2.1626370477046812e-13
3 -4.1024441815730086e+01 -2.4147931196409923e-14
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 2
corr_t
1 +6.5529951269443117e+01 +7.9192560386479701e-14
2 +1.0516822345055870e+00 -1.2443038782429568e-14
3 -4.1025142768037739e+01 +5.9315333178954509e-17

3
pyerrors/input/openQCD.py
View file

@ -217,8 +217,7 @@ def read_rwms(path, prefix, version='2.0', names=None, **kwargs):
return result
def extract_t0(path, prefix, dtr_read, xmin,
spatial_extent, fit_range=5, **kwargs):
def extract_t0(path, prefix, dtr_read, xmin, spatial_extent, fit_range=5, **kwargs):
"""Extract t0 from given .ms.dat files. Returns t0 as Obs.
It is assumed that all boundary effects have

232
pyerrors/input/sfcf.py
View file

@ -9,57 +9,46 @@ from ..obs import Obs
from . import utils
def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
version="1.0c", **kwargs):
"""Read sfcf format from given folder structure.
def read_sfcf(path, prefix, name, quarks='.*', corr_type='bi', noffset=0, wf=0, wf2=0, version="1.0c", **kwargs):
"""Read sfcf c format from given folder structure.
Parameters
----------
path : str
Path to the measurement files.
prefix : str
Ensemble prefix for which the data is to be extracted.
name : str
Name of the correlation function to be extracted from the file
quarks: str, optional
quarks: str
Label of the quarks used in the sfcf input file. e.g. "quark quark"
for version 0.0 this does NOT need to be given with the typical " - "
that is present in the output file,
this is done automatically for this version
noffset: int, optional
noffset: int
Offset of the source (only relevant when wavefunctions are used)
wf: int, optional
wf: int
ID of wave function
wf2: int, optional
wf2: int
ID of the second wavefunction
(only relevant for boundary-to-boundary correlation functions)
im: bool, optional
im: bool
if True, read imaginary instead of real part
of the correlation function.
b2b: bool, optional
if True, read a time-dependent boundary-to-boundary
correlation function
single: bool, optional
if True, read time independent boundary to boundary
correlation function
names: list, optional
corr_type : str
change between bi (boundary - inner) (default) bib (boundary - inner - boundary) and bb (boundary - boundary)
correlator types
names : list
Alternative labeling for replicas/ensembles.
Has to have the appropriate length
ens_name : str, optional
ens_name : str
replaces the name of the ensemble
version: str, optional
version: str
version of SFCF, with which the measurement was done.
if the compact output option (-c) was specified,
if the compact output option (-c) was spectified,
append a "c" to the version (e.g. "1.0c")
if the append output option (-a) was specified,
append an "a" to the version. Currently supported versions
are "0.0", "1.0", "2.0", "1.0c", "2.0c", "1.0a" and "2.0a".
replica: list, optional
append an "a" to the version
replica: list
list of replica to be read, default is all
files: list, optional
files: list
list of files to be read per replica, default is all.
for non-compact output format, hand the folders to be read here.
check_configs: list, optional
for non-conpact ouztput format, hand the folders to be read here.
check_configs:
list of list of supposed configs, eg. [range(1,1000)]
for one replicum with 1000 configs
"""
@ -69,25 +58,28 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
else:
im = 0
part = 'real'
if kwargs.get('single'):
b2b = 1
single = 1
else:
if kwargs.get('b2b'):
b2b = 1
else:
b2b = 0
single = 0
if "replica" in kwargs:
reps = kwargs.get("replica")
if corr_type == 'bb':
b2b = True
single = True
elif corr_type == 'bib':
b2b = True
single = False
else:
b2b = False
single = False
# due to higher usage in current projects,
# compact file format is default
compact = True
appended = False
# get version string
known_versions = ["0.0", "1.0", "2.0", "1.0c", "2.0c", "1.0a", "2.0a"]
if version not in known_versions:
raise Exception("This version is not known!")
# if the letter c is appended to the version,
# the compact fileformat is used (former read_sfcf_c)
if(version[-1] == "c"):
appended = False
compact = True
@ -112,20 +104,22 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
else:
ls.extend(filenames)
break
if not ls:
raise Exception('Error, directory not found')
# Exclude folders with different names
for exc in ls:
if not fnmatch.fnmatch(exc, prefix + '*'):
ls = list(set(ls) - set([exc]))
if not ls:
raise Exception('No matching directories found.')
if len(ls) > 1:
ls.sort(key=lambda x: int(re.findall(r'\d+', x[len(prefix):])[0]))
if not appended:
if len(ls) > 1:
# New version, to cope with ids, etc.
ls.sort(key=lambda x: int(re.findall(r'\d+', x[len(prefix):])[0]))
replica = len(ls)
else:
replica = len([file.split(".")[-1] for file in ls]) // len(set([file.split(".")[-1] for file in ls]))
print("Read", part, "part of '" + str(name) + "' with prefix '" + str(prefix) + "' (" + str(replica) + " replica)")
print('Read', part, 'part of', name, 'from', prefix[:-1],
',', replica, 'replica')
if 'names' in kwargs:
new_names = kwargs.get('names')
if len(new_names) != len(set(new_names)):
@ -133,6 +127,8 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
if len(new_names) != replica:
raise Exception('Names does not have the required length', replica)
else:
# Adjust replica names to new bookmarking system
new_names = []
if not appended:
for entry in ls:
@ -153,6 +149,7 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
ls.sort(key=lambda x: int(re.findall(r'\d+', x)[-1]))
for entry in ls:
myentry = entry[:-len(name) - 1]
# print(myentry)
try:
idx = myentry.index('r')
except Exception:
@ -162,6 +159,7 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
new_names.append(kwargs.get('ens_name') + '|' + myentry[idx:])
else:
new_names.append(myentry[:idx] + '|' + myentry[idx:])
# print(new_names)
idl = []
if not appended:
for i, item in enumerate(ls):
@ -177,16 +175,18 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
sub_ls.extend(dirnames)
break
for exc in sub_ls:
if compact:
# print(sub_ls)
if compact:
for exc in sub_ls:
if not fnmatch.fnmatch(exc, prefix + '*'):
sub_ls = list(set(sub_ls) - set([exc]))
sub_ls.sort(key=lambda x:
int(re.findall(r'\d+', x)[-1]))
else:
sub_ls.sort(key=lambda x: int(re.findall(r'\d+', x)[-1]))
else:
for exc in sub_ls:
if not fnmatch.fnmatch(exc, 'cfg*'):
sub_ls = list(set(sub_ls) - set([exc]))
sub_ls.sort(key=lambda x: int(x[3:]))
sub_ls.sort(key=lambda x: int(x[3:]))
# print(sub_ls)
rep_idl = []
no_cfg = len(sub_ls)
for cfg in sub_ls:
@ -198,88 +198,98 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
except Exception:
raise Exception("Couldn't parse idl from directroy, problem with file " + cfg)
rep_idl.sort()
# maybe there is a better way to print the idls
print(item, ':', no_cfg, ' configurations')
idl.append(rep_idl)
# here we have found all the files we need to look into.
if i == 0:
if compact:
# here, we want to find the place within the file,
# where the correlator we need is stored.
# to do so, the pattern needed is put together
# from the input values
if version == "0.0":
pattern = "# " + name + " : offset " + str(noffset) + ", wf " + str(wf)
# if b2b, a second wf is needed
if b2b:
pattern += ", wf_2 " + str(wf2)
qs = quarks.split(" ")
pattern += " : " + qs[0] + " - " + qs[1]
file = open(path + '/' + item + '/' + sub_ls[0] + '/' + name, "r")
for k, line in enumerate(file):
if read == 1 and not line.strip() and k > start + 1:
break
if read == 1 and k >= start:
T += 1
if pattern in line:
read = 1
start = k + 1
print(str(T) + " entries found.")
else:
pattern = 'name ' + name + '\nquarks ' + quarks + '\noffset ' + str(noffset) + '\nwf ' + str(wf)
if b2b:
pattern += '\nwf_2 ' + str(wf2)
with open(path + '/' + item + '/' + sub_ls[0], 'r') as file:
content = file.read()
match = re.search(pattern, content)
if match:
# the start and end point of the correlator
# in question is extracted for later use in
# the other files
start_read = content.count('\n', 0, match.start()) + 5 + b2b
end_match = re.search(r'\n\s*\n', content[match.start():])
T = content[match.start():].count('\n', 0, end_match.start()) - 4 - b2b
assert T > 0
print(T, 'entries, starting to read in line', start_read)
else:
raise Exception('Correlator with pattern\n' + pattern + '\nnot found.')
else:
# this part does the same as above,
# but for non-compactified versions of the files
with open(path + '/' + item + '/' + sub_ls[0] + '/' + name) as fp:
for k, line in enumerate(fp):
if version == "0.0":
# check if this is really the right file
# by matching pattern similar to above
pattern = "# " + name + " : offset " + str(noffset) + ", wf " + str(wf)
# if b2b, a second wf is needed
if b2b:
pattern += ", wf_2 " + str(wf2)
qs = quarks.split(" ")
pattern += " : " + qs[0] + " - " + qs[1]
if read == 1 and not line.strip() and k > start + 1:
break
if read == 1 and k >= start:
T += 1
# and the file is parsed through to find the pattern
if compact:
file = open(path + '/' + item + '/' + sub_ls[0], "r")
else:
# for non-compactified versions of the files
file = open(path + '/' + item + '/' + sub_ls[0] + '/' + name, "r")
if version == "0.0":
if pattern in line:
# print(line)
read = 1
start = k + 1
else:
if '[correlator]' in line:
read = 1
start = k + 7 + b2b
T -= b2b
print(str(T) + " entries found.")
content = file.read()
match = re.search(pattern, content)
if match:
start_read = content.count('\n', 0, match.start()) + 5 + b2b
end_match = re.search(r'\n\s*\n', content[match.start():])
T = content[match.start():].count('\n', 0, end_match.start()) - 4 - b2b
assert T > 0
print(T, 'entries, starting to read in line', start_read)
else:
raise Exception('Correlator with pattern\n' + pattern + '\nnot found.')
# we found where the correlator
# that is to be read is in the files
# after preparing the datastructure
# the correlators get parsed into...
deltas = []
for j in range(T):
deltas.append([])
for t in range(T):
deltas[t].append(np.zeros(no_cfg))
# ...the actual parsing can start.
# we iterate through all measurement files in the path given...
if compact:
for cfg in range(no_cfg):
with open(path + '/' + item + '/' + sub_ls[cfg]) as fp:
lines = fp.readlines()
# check, if the correlator is in fact
# printed completely
if(start_read + T > len(lines)):
raise Exception("EOF before end of correlator data! Maybe " + path + '/' + item + '/' + sub_ls[cfg] + " is corrupted?")
# and start to read the correlator.
# the range here is chosen like this,
# since this allows for implementing
# a security check for every read correlator later...
for k in range(start_read - 6, start_read + T):
if k == start_read - 5 - b2b:
if lines[k].strip() != 'name ' + name:
raise Exception('Wrong format',
sub_ls[cfg])
raise Exception('Wrong format', sub_ls[cfg])
if(k >= start_read and k < start_read + T):
floats = list(map(float, lines[k].split()))
deltas[k - start_read][i][cfg] = floats[-2:][im]
else:
for cnfg, subitem in enumerate(sub_ls):
with open(path + '/' + item + '/' + subitem + '/' + name) as fp:
# since the non-compatified files
# are typically not so long,
# we can iterate over the whole file.
# here one can also implement the chekc from above.
for k, line in enumerate(fp):
if(k >= start and k < start + T):
if(k >= start_read and k < start_read + T):
floats = list(map(float, line.split()))
if version == "0.0":
deltas[k - start][i][cnfg] = floats[im]
deltas[k - start][i][cnfg] = floats[im - single]
else:
deltas[k - start][i][cnfg] = floats[1 + im - single]
deltas[k - start_read][i][cnfg] = floats[1 + im - single]
else:
if "files" in kwargs:
@ -289,8 +299,6 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
if not fnmatch.fnmatch(exc, prefix + '*.' + name):
ls = list(set(ls) - set([exc]))
ls.sort(key=lambda x: int(re.findall(r'\d+', x)[-1]))
if len(ls) == 0:
raise Exception('File(s) for correlator ' + name + ' not found.')
pattern = 'name ' + name + '\nquarks ' + quarks + '\noffset ' + str(noffset) + '\nwf ' + str(wf)
if b2b:
pattern += '\nwf_2 ' + str(wf2)
@ -302,9 +310,9 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
for linenumber, line in enumerate(content):
if "[run]" in line:
data_starts.append(linenumber)
if len(set([data_starts[i] - data_starts[i - 1] for i in
range(1, len(data_starts))])) > 1:
if len(set([data_starts[i] - data_starts[i - 1] for i in range(1, len(data_starts))])) > 1:
raise Exception("Irregularities in file structure found, not all runs have the same output length")
# first chunk of data
chunk = content[:data_starts[1]]
for linenumber, line in enumerate(chunk):
if line.startswith("gauge_name"):
@ -312,25 +320,31 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
elif line.startswith("[correlator]"):
corr_line = linenumber
found_pat = ""
for li in chunk[corr_line + 1:corr_line + 6 + b2b]:
for li in chunk[corr_line + 1: corr_line + 6 + b2b]:
found_pat += li
if re.search(pattern, found_pat):
start_read = corr_line + 7 + b2b
T = len(chunk) - 1 - start_read
break
endline = corr_line + 6 + b2b
while not chunk[endline] == "\n":
endline += 1
T = endline - start_read
if rep == 0:
deltas = []
for t in range(T):
deltas.append([])
for t in range(T):
deltas[t].append(np.zeros(len(data_starts)))
# all other chunks should follow the same structure
for cnfg in range(len(data_starts)):
start = data_starts[cnfg]
stop = start + data_starts[1]
chunk = content[start:stop]
# meta_data = {}
try:
rep_idl.append(int(chunk[gauge_line].split("n")[-1]))
except Exception:
raise Exception("Couldn't parse idl from directroy, problem with chunk around line " + gauge_line)
raise Exception("Couldn't parse idl from directory, problem with chunk around line ", gauge_line)
found_pat = ""
for li in chunk[corr_line + 1:corr_line + 6 + b2b]:
@ -338,7 +352,7 @@ def read_sfcf(path, prefix, name, quarks='.*', noffset=0, wf=0, wf2=0,
if re.search(pattern, found_pat):
for t, line in enumerate(chunk[start_read:start_read + T]):
floats = list(map(float, line.split()))
deltas[t][rep][cnfg] = floats[-2:][im]
deltas[t][rep][cnfg] = floats[im + 1 - single]
idl.append(rep_idl)
if "check_configs" in kwargs:

1150
tests/data/sfcf_test/data_a/data_a_r0.F_V0 Normal file
View file

File diff suppressed because it is too large Load diff

970
tests/data/sfcf_test/data_a/data_a_r0.f_1 Normal file
View file

@ -0,0 +1,970 @@
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version 2.1
date 2022-01-19 11:04:03 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /data_a_r0_n1
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
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date 2022-01-19 11:04:05 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /data_a_r0_n2
gauge_md5 1ea28326e4090996111a320b8372811d
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+3.5120703575855367e+02 +4.3340379505972648e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
wf_2 2
corr
+3.5120808902177902e+02 +3.9652247575094006e-15
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 0
corr_t
1 +6.8367760900918211e+02 -9.5149222536505804e-10
2 +6.6131885855810310e+02 +3.2960434859595585e-10
3 +6.8367760900806934e+02 -2.3744430846347533e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 1
corr_t
1 +6.8370283168860135e+02 -9.5152732859532533e-10
2 +6.6134325636394544e+02 +3.2961650841969937e-10
3 +6.8370283168748858e+02 -2.3745306857315358e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 2
corr_t
1 +6.8370484437279526e+02 -9.5153012965274573e-10
2 +6.6134520322602793e+02 +3.2961747879154288e-10
3 +6.8370484437168250e+02 -2.3745376753897864e-10
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 1
corr_t
1 +6.5551520722842213e+01 -8.1976426690345305e-13
2 +1.0542820240843382e+00 +2.1626370477046812e-13
3 -4.1024441815730086e+01 -2.4147931196409923e-14
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 0
corr
+3.5120703575855526e+02 -8.2540994138261318e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 1
corr
+3.5122001235609082e+02 -9.7121215247039609e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 2
corr
+3.5122104108046227e+02 -9.0872484903683497e-16
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 0
corr_t
1 +6.8370283168859953e+02 -9.5151770701795658e-10
2 +6.6134325636394351e+02 +3.2962581533640458e-10
3 +6.8370283168748665e+02 -2.3744344699578737e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 1
corr_t
1 +6.8372805529855032e+02 -9.5155281099707234e-10
2 +6.6136765506988547e+02 +3.2963797613709602e-10
3 +6.8372805529743755e+02 -2.3745220688244645e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 2
corr_t
1 +6.8373006805699742e+02 -9.5155561220425917e-10
2 +6.6136960200379315e+02 +3.2963894649982994e-10
3 +6.8373006805588454e+02 -2.3745290592048597e-10
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 2
corr_t
1 +6.5529951269443117e+01 +7.9192560386479701e-14
2 +1.0516822345055870e+00 -1.2443038782429568e-14
3 -4.1025142768037739e+01 +5.9315333178954509e-17
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 0
corr
+3.5120808902177453e+02 +5.1331372776616026e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 1
corr
+3.5122104108046193e+02 +5.0816653044831932e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 2
corr
+3.5122207631098064e+02 +5.1165649253001659e-15
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 0
corr_t
1 +6.8370484437279174e+02 -9.5153224647433932e-10
2 +6.6134520322602452e+02 +3.2961543119772646e-10
3 +6.8370484437167897e+02 -2.3745588436057620e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 1
corr_t
1 +6.8373006805699617e+02 -9.5156735103669992e-10
2 +6.6136960200379178e+02 +3.2962759157000606e-10
3 +6.8373006805588329e+02 -2.3746464475292832e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 2
corr_t
1 +6.8373208082136819e+02 -9.5157015223999714e-10
2 +6.6137154894343041e+02 +3.2962856194733528e-10
3 +6.8373208082025531e+02 -2.3746534378088984e-10

230
tests/data/sfcf_test/data_o/test_r0/cfg1/F_V0 Normal file
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@ -0,0 +1,230 @@
[run]
version 2.1
date 2022-01-19 11:04:00 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /unity
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_oF_V0
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 0
wf_2 0
corr_t
1 +6.8367760900851147e+02 +3.0531839956225539e-10
2 +6.6131885855823339e+02 +3.9736225045852382e-12
3 +6.8367760900810049e+02 -2.5611665964422843e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 0
wf_2 1
corr_t
1 +6.8370283168793060e+02 +3.0532966356282939e-10
2 +6.6134325636407561e+02 +3.9737690976212336e-12
3 +6.8370283168751973e+02 -2.5612610847134760e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 0
wf_2 2
corr_t
1 +6.8370484437212463e+02 +3.0533056232915147e-10
2 +6.6134520322615822e+02 +3.9737807346122766e-12
3 +6.8370484437171353e+02 -2.5612686251836130e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 1
wf_2 0
corr_t
1 +6.8370283168792889e+02 +3.0532890521977295e-10
2 +6.6134325636407402e+02 +3.9730355551484655e-12
3 +6.8370283168751791e+02 -2.5612686681440218e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 1
wf_2 1
corr_t
1 +6.8372805529787934e+02 +3.0534016954586185e-10
2 +6.6136765507001564e+02 +3.9731820664935325e-12
3 +6.8372805529746825e+02 -2.5613631608015786e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 1
wf_2 2
corr_t
1 +6.8373006805632656e+02 +3.0534106842445933e-10
2 +6.6136960200392332e+02 +3.9731937804440792e-12
3 +6.8373006805591558e+02 -2.5613707007587266e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 2
wf_2 0
corr_t
1 +6.8370484437212156e+02 +3.0532220084664646e-10
2 +6.6134520322615526e+02 +3.9656927030717790e-12
3 +6.8370484437171069e+02 -2.5613522400086377e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 2
wf_2 1
corr_t
1 +6.8373006805632599e+02 +3.0533346499198999e-10
2 +6.6136960200392275e+02 +3.9658390079382195e-12
3 +6.8373006805591490e+02 -2.5614467350834153e-10
[correlator]
name F_V0
quarks lquark lquark
offset 0
wf 2
wf_2 2
corr_t
1 +6.8373208082069789e+02 +3.0533436384459901e-10
2 +6.6137154894356127e+02 +3.9658506942251639e-12
3 +6.8373208082028680e+02 -2.5614542753491032e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 0
corr_t
1 +6.8367760900918211e+02 -9.5149222536505804e-10
2 +6.6131885855810310e+02 +3.2960434859595585e-10
3 +6.8367760900806934e+02 -2.3744430846347533e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 1
corr_t
1 +6.8370283168860135e+02 -9.5152732859532533e-10
2 +6.6134325636394544e+02 +3.2961650841969937e-10
3 +6.8370283168748858e+02 -2.3745306857315358e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 0
wf_2 2
corr_t
1 +6.8370484437279526e+02 -9.5153012965274573e-10
2 +6.6134520322602793e+02 +3.2961747879154288e-10
3 +6.8370484437168250e+02 -2.3745376753897864e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 0
corr_t
1 +6.8370283168859953e+02 -9.5151770701795658e-10
2 +6.6134325636394351e+02 +3.2962581533640458e-10
3 +6.8370283168748665e+02 -2.3744344699578737e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 1
corr_t
1 +6.8372805529855032e+02 -9.5155281099707234e-10
2 +6.6136765506988547e+02 +3.2963797613709602e-10
3 +6.8372805529743755e+02 -2.3745220688244645e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 1
wf_2 2
corr_t
1 +6.8373006805699742e+02 -9.5155561220425917e-10
2 +6.6136960200379315e+02 +3.2963894649982994e-10
3 +6.8373006805588454e+02 -2.3745290592048597e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 0
corr_t
1 +6.8370484437279174e+02 -9.5153224647433932e-10
2 +6.6134520322602452e+02 +3.2961543119772646e-10
3 +6.8370484437167897e+02 -2.3745588436057620e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 1
corr_t
1 +6.8373006805699617e+02 -9.5156735103669992e-10
2 +6.6136960200379178e+02 +3.2962759157000606e-10
3 +6.8373006805588329e+02 -2.3746464475292832e-10
[correlator]
name F_V0
quarks lquark lquark
offset 1
wf 2
wf_2 2
corr_t
1 +6.8373208082136819e+02 -9.5157015223999714e-10
2 +6.6137154894343041e+02 +3.2962856194733528e-10
3 +6.8373208082025531e+02 -2.3746534378088984e-10

194
tests/data/sfcf_test/data_o/test_r0/cfg1/f_1 Normal file
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@ -0,0 +1,194 @@
[run]
version 2.1
date 2022-01-19 11:04:00 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /unity
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_of_1
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 0
wf_2 0
corr
+3.5119415254545021e+02 +6.7620978057264750e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 0
wf_2 1
corr
+3.5120703575855339e+02 +6.5026340956203663e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 0
wf_2 2
corr
+3.5120808902177868e+02 +6.5443496235264788e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 1
wf_2 0
corr
+3.5120703575855515e+02 +6.9706500417651470e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 1
wf_2 1
corr
+3.5122001235609065e+02 +6.9516150897757419e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 1
wf_2 2
corr
+3.5122104108046199e+02 +6.9232860455434941e-15
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 2
wf_2 0
corr
+3.5120808902177447e+02 +1.0849949614595719e-14
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 2
wf_2 1
corr
+3.5122104108046182e+02 +1.0866063643253473e-14
[correlator]
name f_1
quarks lquark lquark
offset 0
wf 2
wf_2 2
corr
+3.5122207631098047e+02 +1.0827277318679030e-14
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
wf_2 0
corr
+3.5119415254545038e+02 +3.0143306723935508e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
wf_2 1
corr
+3.5120703575855367e+02 +4.3340379505972648e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
wf_2 2
corr
+3.5120808902177902e+02 +3.9652247575094006e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 0
corr
+3.5120703575855526e+02 -8.2540994138261318e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 1
corr
+3.5122001235609082e+02 -9.7121215247039609e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 1
wf_2 2
corr
+3.5122104108046227e+02 -9.0872484903683497e-16
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 0
corr
+3.5120808902177453e+02 +5.1331372776616026e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 1
corr
+3.5122104108046193e+02 +5.0816653044831932e-15
[correlator]
name f_1
quarks lquark lquark
offset 1
wf 2
wf_2 2
corr
+3.5122207631098064e+02 +5.1165649253001659e-15

80
tests/data/sfcf_test/data_o/test_r0/cfg1/f_A Normal file
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@ -0,0 +1,80 @@
[run]
version 2.1
date 2022-01-19 11:04:00 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /unity
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_of_A
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 0
corr_t
1 +6.5471188727972304e+01 -6.1214214711790100e-12
2 +1.0447210336915187e+00 +8.9219487930753188e-13
3 -4.1025094911185178e+01 -4.8315634170546161e-14
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 1
corr_t
1 +6.5551520722862705e+01 +2.0963356863957609e-13
2 +1.0542820240851569e+00 +2.3989756974599379e-15
3 -4.1024441815729936e+01 -5.7107484666182308e-15
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 2
corr_t
1 +6.5529951269442847e+01 -6.6512260271334321e-14
2 +1.0516822345055969e+00 -2.2935262162529075e-15
3 -4.1025142768037746e+01 +3.7566377680004518e-16
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 0
corr_t
1 +6.5471188727965909e+01 -1.6112786177915427e-11
2 +1.0447210337411881e+00 -7.0387528705692678e-13
3 -4.1025094911167137e+01 +4.6509152745618223e-13
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 1
corr_t
1 +6.5551520722842213e+01 -8.1976426690345305e-13
2 +1.0542820240843382e+00 +2.1626370477046812e-13
3 -4.1024441815730086e+01 -2.4147931196409923e-14
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 2
corr_t
1 +6.5529951269443117e+01 +7.9192560386479701e-14
2 +1.0516822345055870e+00 -1.2443038782429568e-14
3 -4.1025142768037739e+01 +5.9315333178954509e-17

3273
tests/data/sfcf_test/param/out.out Normal file
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File diff suppressed because it is too large Load diff

102
tests/data/sfcf_test/param/parameters_a Normal file
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@ -0,0 +1,102 @@
tsize 4
l1 4
l2 4
l3 4
nf 3
beta +3.5522000000000000e+00
ct +1.0551857440459433e+00
cttilde +9.7457913405776697e-01
csw +1.8228459568314139e+00
isw 0
errsq +1.0000000000000001e-18
nmax 4096
oqcd_solver_select -1
oqcd_solver_param 3844
[Solver 0]
solver DFL_SAP_GCR
nkv 24
isolv 1
nmr 4
ncy 5
nmx 2048
res +1.0000000000000000e-10
istop 0
[Solver 1]
solver CGNE
nkv 0
isolv 0
nmr 0
ncy 0
nmx 4096
res +1.0000000000000000e-10
istop 0
[Solver 2]
solver SAP_GCR
nkv 24
isolv 1
nmr 4
ncy 5
nmx 2048
res +1.0000000000000000e-10
istop 0
[Solver 3]
solver CGNE_NO_EO
nkv 0
isolv 0
nmr 0
ncy 0
nmx 4096
res +1.0000000000000000e-10
istop 0
[SAP]
bs 4 4 4 4
[Deflation subspace]
bs 4 4 4 4
Ns 20
[Deflation subspace generation]
kappa +1.3713790000000001e-01
mu +0.0000000000000000e+00
ninv 10
nmr 4
ncy 5
[Deflation projection]
nkv 18
nmx 2048
res +1.0000000000000000e-02
wf_offsets 2
+0.0000000000000000e+00 +0.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +0.0000000000000000e+00 +5.0000000000000000e-01
wf_basis 3
+0.0000000000000000e+00 +2.6666666666666665e+00
+1.0000000000000000e+00 +2.6666666666666665e+00
+0.0000000000000000e+00 +5.3333333333333330e+00
wf_coeff 3
+1.0000000000000000e+00 +0.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +1.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +0.0000000000000000e+00 +1.0000000000000000e+00
qr 1
lquark +1.3713790000000001e-01 +5.0000000000000000e-01 +5.0000000000000000e-01 +5.0000000000000000e-01 persistent
mrr 1
lquark lquark
crr 3
f_A
f_1
F_V0
sg 0
qs 0
mrs 0
crs 0
# param_hash 686af5e712ee2902180f5428af94c6e7

102
tests/data/sfcf_test/param/parameters_c Normal file
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@ -0,0 +1,102 @@
tsize 4
l1 4
l2 4
l3 4
nf 3
beta +3.5522000000000000e+00
ct +1.0551857440459433e+00
cttilde +9.7457913405776697e-01
csw +1.8228459568314139e+00
isw 0
errsq +1.0000000000000001e-18
nmax 4096
oqcd_solver_select -1
oqcd_solver_param 3844
[Solver 0]
solver DFL_SAP_GCR
nkv 24
isolv 1
nmr 4
ncy 5
nmx 2048
res +1.0000000000000000e-10
istop 0
[Solver 1]
solver CGNE
nkv 0
isolv 0
nmr 0
ncy 0
nmx 4096
res +1.0000000000000000e-10
istop 0
[Solver 2]
solver SAP_GCR
nkv 24
isolv 1
nmr 4
ncy 5
nmx 2048
res +1.0000000000000000e-10
istop 0
[Solver 3]
solver CGNE_NO_EO
nkv 0
isolv 0
nmr 0
ncy 0
nmx 4096
res +1.0000000000000000e-10
istop 0
[SAP]
bs 4 4 4 4
[Deflation subspace]
bs 4 4 4 4
Ns 20
[Deflation subspace generation]
kappa +1.3713790000000001e-01
mu +0.0000000000000000e+00
ninv 10
nmr 4
ncy 5
[Deflation projection]
nkv 18
nmx 2048
res +1.0000000000000000e-02
wf_offsets 2
+0.0000000000000000e+00 +0.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +0.0000000000000000e+00 +5.0000000000000000e-01
wf_basis 3
+0.0000000000000000e+00 +2.6666666666666665e+00
+1.0000000000000000e+00 +2.6666666666666665e+00
+0.0000000000000000e+00 +5.3333333333333330e+00
wf_coeff 3
+1.0000000000000000e+00 +0.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +1.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +0.0000000000000000e+00 +1.0000000000000000e+00
qr 1
lquark +1.3713790000000001e-01 +5.0000000000000000e-01 +5.0000000000000000e-01 +5.0000000000000000e-01 persistent
mrr 1
lquark lquark
crr 3
f_A
f_1
F_V0
sg 0
qs 0
mrs 0
crs 0
# param_hash 686af5e712ee2902180f5428af94c6e7

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@ -0,0 +1,102 @@
tsize 4
l1 4
l2 4
l3 4
nf 3
beta +3.5522000000000000e+00
ct +1.0551857440459433e+00
cttilde +9.7457913405776697e-01
csw +1.8228459568314139e+00
isw 0
errsq +1.0000000000000001e-18
nmax 4096
oqcd_solver_select -1
oqcd_solver_param 3844
[Solver 0]
solver DFL_SAP_GCR
nkv 24
isolv 1
nmr 4
ncy 5
nmx 2048
res +1.0000000000000000e-10
istop 0
[Solver 1]
solver CGNE
nkv 0
isolv 0
nmr 0
ncy 0
nmx 4096
res +1.0000000000000000e-10
istop 0
[Solver 2]
solver SAP_GCR
nkv 24
isolv 1
nmr 4
ncy 5
nmx 2048
res +1.0000000000000000e-10
istop 0
[Solver 3]
solver CGNE_NO_EO
nkv 0
isolv 0
nmr 0
ncy 0
nmx 4096
res +1.0000000000000000e-10
istop 0
[SAP]
bs 4 4 4 4
[Deflation subspace]
bs 4 4 4 4
Ns 20
[Deflation subspace generation]
kappa +1.3713790000000001e-01
mu +0.0000000000000000e+00
ninv 10
nmr 4
ncy 5
[Deflation projection]
nkv 18
nmx 2048
res +1.0000000000000000e-02
wf_offsets 2
+0.0000000000000000e+00 +0.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +0.0000000000000000e+00 +5.0000000000000000e-01
wf_basis 3
+0.0000000000000000e+00 +2.6666666666666665e+00
+1.0000000000000000e+00 +2.6666666666666665e+00
+0.0000000000000000e+00 +5.3333333333333330e+00
wf_coeff 3
+1.0000000000000000e+00 +0.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +1.0000000000000000e+00 +0.0000000000000000e+00
+0.0000000000000000e+00 +0.0000000000000000e+00 +1.0000000000000000e+00
qr 1
lquark +1.3713790000000001e-01 +5.0000000000000000e-01 +5.0000000000000000e-01 +5.0000000000000000e-01 persistent
mrr 1
lquark lquark
crr 3
f_A
f_1
F_V0
sg 0
qs 0
mrs 0
crs 0
# param_hash 686af5e712ee2902180f5428af94c6e7

125
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import os,sys,inspect
current_dir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe())))
parent_dir = os.path.dirname(current_dir)
sys.path.insert(0, parent_dir)
import pyerrors as pe
import pyerrors.input.openQCD as qcdin
import pyerrors.input.sfcf as sfin
import shutil
from time import sleep
def build_test_environment(env_type, cfgs, reps):
if env_type == "o":
for i in range(2,cfgs+1):
shutil.copytree("tests/data/sfcf_test/data_o/test_r0/cfg1","tests/data/sfcf_test/data_o/test_r0/cfg"+str(i))
for i in range(1,reps):
shutil.copytree("tests/data/sfcf_test/data_o/test_r0", "tests/data/sfcf_test/data_o/test_r"+str(i))
elif env_type == "c":
for i in range(2,cfgs+1):
shutil.copy("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
for i in range(1,reps):
os.mkdir("tests/data/sfcf_test/data_c/data_c_r"+str(i))
for j in range(1,cfgs+1):
shutil.copy("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n1","tests/data/sfcf_test/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
def clean_test_environment(env_type, cfgs, reps):
if env_type == "o":
for i in range(1,reps):
shutil.rmtree("tests/data/sfcf_test/data_o/test_r"+str(i))
for i in range(2,cfgs+1):
shutil.rmtree("tests/data/sfcf_test/data_o/test_r0/cfg"+str(i))
elif env_type == "c":
for i in range(1,reps):
shutil.rmtree("tests/data/sfcf_test/data_c/data_c_r"+str(i))
for i in range(2,cfgs+1):
os.remove("tests/data/sfcf_test/data_c/data_c_r0/data_c_r0_n"+str(i))
def test_o_bb():
build_test_environment("o",5,3)
f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "f_1",quarks="lquark lquark", wf = 0, wf2=0, version = "2.0", corr_type="bb")
print(f_1)
clean_test_environment("o",5,3)
assert len(f_1) == 1
assert f_1[0].value == 351.1941525454502
def test_o_bi():
build_test_environment("o",5,3)
f_A = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "f_A",quarks="lquark lquark", wf = 0, version = "2.0")
print(f_A)
clean_test_environment("o",5,3)
assert len(f_A) == 3
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.025094911185185
def test_o_bib():
build_test_environment("o",5,3)
f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_o", "test", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0", corr_type="bib")
print(f_V0)
clean_test_environment("o",5,3)
assert len(f_V0) == 3
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005
def test_c_bb():
build_test_environment("c",5,3)
f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0c", corr_type="bb")
print(f_1)
clean_test_environment("c",5,3)
assert len(f_1) == 1
assert f_1[0].value == 351.1941525454502
def test_c_bi():
build_test_environment("c",5,3)
f_A = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "f_A", quarks="lquark lquark", wf = 0, version = "2.0c")
print(f_A)
clean_test_environment("c",5,3)
assert len(f_A) == 3
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.025094911185185
def test_c_bib():
build_test_environment("c",5,3)
f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_c", "data_c", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0c", corr_type="bib")
print(f_V0)
clean_test_environment("c",5,3)
assert len(f_V0) == 3
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005
def test_a_bb():
build_test_environment("a",5,3)
f_1 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_1", quarks="lquark lquark", wf = 0, wf2=0, version = "2.0a", corr_type="bb")
print(f_1)
clean_test_environment("a",5,3)
assert len(f_1) == 1
assert f_1[0].value == 351.1941525454502
def test_a_bi():
build_test_environment("a",5,3)
f_A = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "f_A", quarks="lquark lquark", wf = 0, version = "2.0a")
print(f_A)
clean_test_environment("a",5,3)
assert len(f_A) == 3
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.02509491118518
def test_a_bib():
build_test_environment("a",5,3)
f_V0 = sfin.read_sfcf("tests/data/sfcf_test/data_a", "data_a", "F_V0",quarks="lquark lquark", wf = 0, wf2 = 0, version = "2.0a", corr_type="bib")
print(f_V0)
clean_test_environment("a",5,3)
assert len(f_V0) == 3
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005