mirror of
https://github.com/fjosw/pyerrors.git
synced 2025-03-15 14:50:25 +01:00
Documentation updated
This commit is contained in:
fjosw
parent
520d506c5c
commit
47ebab3037
8 changed files with 285 additions and 285 deletions
|
|
@ -1155,15 +1155,15 @@ The following entries are optional:</li>
|
|||
</span><span id="L-481"><a href="#L-481"><span class="linenos">481</span></a><span class="kn">from</span> <span class="nn">.correlators</span> <span class="kn">import</span> <span class="o">*</span>
|
||||
</span><span id="L-482"><a href="#L-482"><span class="linenos">482</span></a><span class="kn">from</span> <span class="nn">.fits</span> <span class="kn">import</span> <span class="o">*</span>
|
||||
</span><span id="L-483"><a href="#L-483"><span class="linenos">483</span></a><span class="kn">from</span> <span class="nn">.misc</span> <span class="kn">import</span> <span class="o">*</span>
|
||||
</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dirac</span>
|
||||
</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="nb">input</span>
|
||||
</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">linalg</span>
|
||||
</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">mpm</span>
|
||||
</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">roots</span>
|
||||
</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">integrate</span>
|
||||
</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">special</span>
|
||||
</span><span id="L-484"><a href="#L-484"><span class="linenos">484</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dirac</span> <span class="k">as</span> <span class="n">dirac</span>
|
||||
</span><span id="L-485"><a href="#L-485"><span class="linenos">485</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="nb">input</span> <span class="k">as</span> <span class="nb">input</span>
|
||||
</span><span id="L-486"><a href="#L-486"><span class="linenos">486</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">linalg</span> <span class="k">as</span> <span class="n">linalg</span>
|
||||
</span><span id="L-487"><a href="#L-487"><span class="linenos">487</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">mpm</span> <span class="k">as</span> <span class="n">mpm</span>
|
||||
</span><span id="L-488"><a href="#L-488"><span class="linenos">488</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">roots</span> <span class="k">as</span> <span class="n">roots</span>
|
||||
</span><span id="L-489"><a href="#L-489"><span class="linenos">489</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">integrate</span> <span class="k">as</span> <span class="n">integrate</span>
|
||||
</span><span id="L-490"><a href="#L-490"><span class="linenos">490</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">special</span> <span class="k">as</span> <span class="n">special</span>
|
||||
</span><span id="L-491"><a href="#L-491"><span class="linenos">491</span></a>
|
||||
</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a><span class="kn">from</span> <span class="nn">.version</span> <span class="kn">import</span> <span class="n">__version__</span>
|
||||
</span><span id="L-492"><a href="#L-492"><span class="linenos">492</span></a><span class="kn">from</span> <span class="nn">.version</span> <span class="kn">import</span> <span class="n">__version__</span> <span class="k">as</span> <span class="n">__version__</span>
|
||||
</span></pre></div>
|
||||
|
||||
|
||||
|
|
|
|||
File diff suppressed because it is too large
Load diff
|
|
@ -139,7 +139,7 @@
|
|||
</span><span id="L-34"><a href="#L-34"><span class="linenos">34</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-35"><a href="#L-35"><span class="linenos">35</span></a> <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
|
||||
</span><span id="L-36"><a href="#L-36"><span class="linenos">36</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">))):</span>
|
||||
</span><span id="L-37"><a href="#L-37"><span class="linenos">37</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
|
||||
</span><span id="L-37"><a href="#L-37"><span class="linenos">37</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
|
||||
</span><span id="L-38"><a href="#L-38"><span class="linenos">38</span></a>
|
||||
</span><span id="L-39"><a href="#L-39"><span class="linenos">39</span></a> <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
|
||||
</span><span id="L-40"><a href="#L-40"><span class="linenos">40</span></a>
|
||||
|
|
@ -157,7 +157,7 @@
|
|||
</span><span id="L-52"><a href="#L-52"><span class="linenos">52</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-53"><a href="#L-53"><span class="linenos">53</span></a> <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span>
|
||||
</span><span id="L-54"><a href="#L-54"><span class="linenos">54</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))):</span>
|
||||
</span><span id="L-55"><a href="#L-55"><span class="linenos">55</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
|
||||
</span><span id="L-55"><a href="#L-55"><span class="linenos">55</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
|
||||
</span><span id="L-56"><a href="#L-56"><span class="linenos">56</span></a>
|
||||
</span><span id="L-57"><a href="#L-57"><span class="linenos">57</span></a> <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">o</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">/</span> <span class="mi">12</span>
|
||||
</span><span id="L-58"><a href="#L-58"><span class="linenos">58</span></a>
|
||||
|
|
@ -197,7 +197,7 @@
|
|||
</span><span id="L-92"><a href="#L-92"><span class="linenos">92</span></a> <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">'SigmaZT'</span><span class="p">:</span>
|
||||
</span><span id="L-93"><a href="#L-93"><span class="linenos">93</span></a> <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
|
||||
</span><span id="L-94"><a href="#L-94"><span class="linenos">94</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
</span><span id="L-95"><a href="#L-95"><span class="linenos">95</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Unkown gamma structure'</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
|
||||
</span><span id="L-95"><a href="#L-95"><span class="linenos">95</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Unkown gamma structure'</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
|
||||
</span><span id="L-96"><a href="#L-96"><span class="linenos">96</span></a> <span class="k">return</span> <span class="n">g</span>
|
||||
</span></pre></div>
|
||||
|
||||
|
|
@ -353,7 +353,7 @@
|
|||
</span><span id="epsilon_tensor-35"><a href="#epsilon_tensor-35"><span class="linenos">35</span></a><span class="sd"> """</span>
|
||||
</span><span id="epsilon_tensor-36"><a href="#epsilon_tensor-36"><span class="linenos">36</span></a> <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">))</span>
|
||||
</span><span id="epsilon_tensor-37"><a href="#epsilon_tensor-37"><span class="linenos">37</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">))):</span>
|
||||
</span><span id="epsilon_tensor-38"><a href="#epsilon_tensor-38"><span class="linenos">38</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
|
||||
</span><span id="epsilon_tensor-38"><a href="#epsilon_tensor-38"><span class="linenos">38</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">)</span>
|
||||
</span><span id="epsilon_tensor-39"><a href="#epsilon_tensor-39"><span class="linenos">39</span></a>
|
||||
</span><span id="epsilon_tensor-40"><a href="#epsilon_tensor-40"><span class="linenos">40</span></a> <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">/</span> <span class="mi">2</span>
|
||||
</span></pre></div>
|
||||
|
|
@ -397,7 +397,7 @@ Element (i,j,k) of the epsilon tensor of rank 3</li>
|
|||
</span><span id="epsilon_tensor_rank4-53"><a href="#epsilon_tensor_rank4-53"><span class="linenos">53</span></a><span class="sd"> """</span>
|
||||
</span><span id="epsilon_tensor_rank4-54"><a href="#epsilon_tensor_rank4-54"><span class="linenos">54</span></a> <span class="n">test_set</span> <span class="o">=</span> <span class="nb">set</span><span class="p">((</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">))</span>
|
||||
</span><span id="epsilon_tensor_rank4-55"><a href="#epsilon_tensor_rank4-55"><span class="linenos">55</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">,</span> <span class="mi">4</span><span class="p">))</span> <span class="ow">or</span> <span class="n">test_set</span> <span class="o"><=</span> <span class="nb">set</span><span class="p">((</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">2</span><span class="p">,</span> <span class="mi">3</span><span class="p">))):</span>
|
||||
</span><span id="epsilon_tensor_rank4-56"><a href="#epsilon_tensor_rank4-56"><span class="linenos">56</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
|
||||
</span><span id="epsilon_tensor_rank4-56"><a href="#epsilon_tensor_rank4-56"><span class="linenos">56</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Unexpected input"</span><span class="p">,</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">,</span> <span class="n">k</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span>
|
||||
</span><span id="epsilon_tensor_rank4-57"><a href="#epsilon_tensor_rank4-57"><span class="linenos">57</span></a>
|
||||
</span><span id="epsilon_tensor_rank4-58"><a href="#epsilon_tensor_rank4-58"><span class="linenos">58</span></a> <span class="k">return</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">j</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">k</span> <span class="o">-</span> <span class="n">i</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">i</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">j</span> <span class="o">-</span> <span class="n">o</span><span class="p">)</span> <span class="o">*</span> <span class="p">(</span><span class="n">o</span> <span class="o">-</span> <span class="n">k</span><span class="p">)</span> <span class="o">/</span> <span class="mi">12</span>
|
||||
</span></pre></div>
|
||||
|
|
@ -463,7 +463,7 @@ Element (i,j,k,o) of the epsilon tensor of rank 4</li>
|
|||
</span><span id="Grid_gamma-93"><a href="#Grid_gamma-93"><span class="linenos">93</span></a> <span class="k">elif</span> <span class="n">gamma_tag</span> <span class="o">==</span> <span class="s1">'SigmaZT'</span><span class="p">:</span>
|
||||
</span><span id="Grid_gamma-94"><a href="#Grid_gamma-94"><span class="linenos">94</span></a> <span class="n">g</span> <span class="o">=</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="p">(</span><span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">@</span> <span class="n">gamma</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span>
|
||||
</span><span id="Grid_gamma-95"><a href="#Grid_gamma-95"><span class="linenos">95</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
</span><span id="Grid_gamma-96"><a href="#Grid_gamma-96"><span class="linenos">96</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Unkown gamma structure'</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
|
||||
</span><span id="Grid_gamma-96"><a href="#Grid_gamma-96"><span class="linenos">96</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Unkown gamma structure'</span><span class="p">,</span> <span class="n">gamma_tag</span><span class="p">)</span>
|
||||
</span><span id="Grid_gamma-97"><a href="#Grid_gamma-97"><span class="linenos">97</span></a> <span class="k">return</span> <span class="n">g</span>
|
||||
</span></pre></div>
|
||||
|
||||
|
|
|
|||
|
|
@ -100,14 +100,14 @@ See <code><a href="obs.html#Obs.export_jackknife">pyerrors.obs.Obs.export_jackkn
|
|||
</span><span id="L-5"><a href="#L-5"><span class="linenos"> 5</span></a><span class="sd">For comparison with other analysis workflows `pyerrors` can also generate jackknife samples from an `Obs` object or import jackknife samples into an `Obs` object.</span>
|
||||
</span><span id="L-6"><a href="#L-6"><span class="linenos"> 6</span></a><span class="sd">See `pyerrors.obs.Obs.export_jackknife` and `pyerrors.obs.import_jackknife` for details.</span>
|
||||
</span><span id="L-7"><a href="#L-7"><span class="linenos"> 7</span></a><span class="sd">'''</span>
|
||||
</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">bdio</span>
|
||||
</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dobs</span>
|
||||
</span><span id="L-10"><a href="#L-10"><span class="linenos">10</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">hadrons</span>
|
||||
</span><span id="L-11"><a href="#L-11"><span class="linenos">11</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">json</span>
|
||||
</span><span id="L-12"><a href="#L-12"><span class="linenos">12</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">misc</span>
|
||||
</span><span id="L-13"><a href="#L-13"><span class="linenos">13</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">openQCD</span>
|
||||
</span><span id="L-14"><a href="#L-14"><span class="linenos">14</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">pandas</span>
|
||||
</span><span id="L-15"><a href="#L-15"><span class="linenos">15</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">sfcf</span>
|
||||
</span><span id="L-8"><a href="#L-8"><span class="linenos"> 8</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">bdio</span> <span class="k">as</span> <span class="n">bdio</span>
|
||||
</span><span id="L-9"><a href="#L-9"><span class="linenos"> 9</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">dobs</span> <span class="k">as</span> <span class="n">dobs</span>
|
||||
</span><span id="L-10"><a href="#L-10"><span class="linenos">10</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">hadrons</span> <span class="k">as</span> <span class="n">hadrons</span>
|
||||
</span><span id="L-11"><a href="#L-11"><span class="linenos">11</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">json</span> <span class="k">as</span> <span class="n">json</span>
|
||||
</span><span id="L-12"><a href="#L-12"><span class="linenos">12</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">misc</span> <span class="k">as</span> <span class="n">misc</span>
|
||||
</span><span id="L-13"><a href="#L-13"><span class="linenos">13</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">openQCD</span> <span class="k">as</span> <span class="n">openQCD</span>
|
||||
</span><span id="L-14"><a href="#L-14"><span class="linenos">14</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">pandas</span> <span class="k">as</span> <span class="n">pandas</span>
|
||||
</span><span id="L-15"><a href="#L-15"><span class="linenos">15</span></a><span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">sfcf</span> <span class="k">as</span> <span class="n">sfcf</span>
|
||||
</span></pre></div>
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -175,7 +175,7 @@
|
|||
</span><span id="L-79"><a href="#L-79"><span class="linenos"> 79</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">space</span>
|
||||
</span><span id="L-80"><a href="#L-80"><span class="linenos"> 80</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">li</span> <span class="o">+</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span>
|
||||
</span><span id="L-81"><a href="#L-81"><span class="linenos"> 81</span></a> <span class="k">if</span> <span class="n">li</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">'<'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">cm</span><span class="p">:</span>
|
||||
</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="s1">'<</span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="s1">'/'</span><span class="p">)</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
||||
</span><span id="L-82"><a href="#L-82"><span class="linenos"> 82</span></a> <span class="k">if</span> <span class="s1">'<</span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="s1">'/'</span><span class="p">)</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
||||
</span><span id="L-83"><a href="#L-83"><span class="linenos"> 83</span></a> <span class="n">c</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||
</span><span id="L-84"><a href="#L-84"><span class="linenos"> 84</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">False</span>
|
||||
</span><span id="L-85"><a href="#L-85"><span class="linenos"> 85</span></a> <span class="k">return</span> <span class="n">o</span>
|
||||
|
|
@ -767,7 +767,7 @@
|
|||
</span><span id="L-671"><a href="#L-671"><span class="linenos">671</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">space</span>
|
||||
</span><span id="L-672"><a href="#L-672"><span class="linenos">672</span></a> <span class="n">o</span> <span class="o">+=</span> <span class="n">li</span> <span class="o">+</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span>
|
||||
</span><span id="L-673"><a href="#L-673"><span class="linenos">673</span></a> <span class="k">if</span> <span class="n">li</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">'<'</span><span class="p">)</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">cm</span><span class="p">:</span>
|
||||
</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="s1">'<</span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="s1">'/'</span><span class="p">)</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
||||
</span><span id="L-674"><a href="#L-674"><span class="linenos">674</span></a> <span class="k">if</span> <span class="s1">'<</span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="s1">'/'</span><span class="p">)</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">li</span><span class="p">:</span>
|
||||
</span><span id="L-675"><a href="#L-675"><span class="linenos">675</span></a> <span class="n">c</span> <span class="o">+=</span> <span class="mi">1</span>
|
||||
</span><span id="L-676"><a href="#L-676"><span class="linenos">676</span></a> <span class="n">cm</span> <span class="o">=</span> <span class="kc">False</span>
|
||||
</span><span id="L-677"><a href="#L-677"><span class="linenos">677</span></a> <span class="k">return</span> <span class="n">o</span>
|
||||
|
|
|
|||
|
|
@ -218,7 +218,7 @@
|
|||
</span><span id="L-113"><a href="#L-113"><span class="linenos">113</span></a> <span class="n">infos</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="L-114"><a href="#L-114"><span class="linenos">114</span></a> <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
|
||||
</span><span id="L-115"><a href="#L-115"><span class="linenos">115</span></a> <span class="n">h5file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">"r"</span><span class="p">)</span>
|
||||
</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">group</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
|
||||
</span><span id="L-116"><a href="#L-116"><span class="linenos">116</span></a> <span class="k">if</span> <span class="n">group</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">entry</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
|
||||
</span><span id="L-117"><a href="#L-117"><span class="linenos">117</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Entry '"</span> <span class="o">+</span> <span class="n">entry</span> <span class="o">+</span> <span class="s2">"' not contained in the files."</span><span class="p">)</span>
|
||||
</span><span id="L-118"><a href="#L-118"><span class="linenos">118</span></a> <span class="n">raw_data</span> <span class="o">=</span> <span class="n">h5file</span><span class="p">[</span><span class="n">group</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">entry</span> <span class="o">+</span> <span class="s1">'/corr'</span><span class="p">]</span>
|
||||
</span><span id="L-119"><a href="#L-119"><span class="linenos">119</span></a> <span class="n">real_data</span> <span class="o">=</span> <span class="n">raw_data</span><span class="p">[:]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s2">"complex"</span><span class="p">)</span>
|
||||
|
|
@ -291,7 +291,7 @@
|
|||
</span><span id="L-186"><a href="#L-186"><span class="linenos">186</span></a> <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
|
||||
</span><span id="L-187"><a href="#L-187"><span class="linenos">187</span></a> <span class="n">h5file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">"r"</span><span class="p">)</span>
|
||||
</span><span id="L-188"><a href="#L-188"><span class="linenos">188</span></a> <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
|
||||
</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">tree</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
|
||||
</span><span id="L-189"><a href="#L-189"><span class="linenos">189</span></a> <span class="k">if</span> <span class="n">tree</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">key</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
|
||||
</span><span id="L-190"><a href="#L-190"><span class="linenos">190</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Entry '"</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s2">"' not contained in the files."</span><span class="p">)</span>
|
||||
</span><span id="L-191"><a href="#L-191"><span class="linenos">191</span></a> <span class="n">raw_data</span> <span class="o">=</span> <span class="n">h5file</span><span class="p">[</span><span class="n">tree</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">key</span> <span class="o">+</span> <span class="s1">'/data'</span><span class="p">]</span>
|
||||
</span><span id="L-192"><a href="#L-192"><span class="linenos">192</span></a> <span class="n">real_data</span> <span class="o">=</span> <span class="n">raw_data</span><span class="p">[:]</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">double</span><span class="p">)</span>
|
||||
|
|
@ -792,7 +792,7 @@
|
|||
</span><span id="read_hd5-114"><a href="#read_hd5-114"><span class="linenos">114</span></a> <span class="n">infos</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="read_hd5-115"><a href="#read_hd5-115"><span class="linenos">115</span></a> <span class="k">for</span> <span class="n">hd5_file</span> <span class="ow">in</span> <span class="n">files</span><span class="p">:</span>
|
||||
</span><span id="read_hd5-116"><a href="#read_hd5-116"><span class="linenos">116</span></a> <span class="n">h5file</span> <span class="o">=</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">path</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">hd5_file</span><span class="p">,</span> <span class="s2">"r"</span><span class="p">)</span>
|
||||
</span><span id="read_hd5-117"><a href="#read_hd5-117"><span class="linenos">117</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">group</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">entry</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
|
||||
</span><span id="read_hd5-117"><a href="#read_hd5-117"><span class="linenos">117</span></a> <span class="k">if</span> <span class="n">group</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">entry</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">h5file</span><span class="p">:</span>
|
||||
</span><span id="read_hd5-118"><a href="#read_hd5-118"><span class="linenos">118</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Entry '"</span> <span class="o">+</span> <span class="n">entry</span> <span class="o">+</span> <span class="s2">"' not contained in the files."</span><span class="p">)</span>
|
||||
</span><span id="read_hd5-119"><a href="#read_hd5-119"><span class="linenos">119</span></a> <span class="n">raw_data</span> <span class="o">=</span> <span class="n">h5file</span><span class="p">[</span><span class="n">group</span> <span class="o">+</span> <span class="s1">'/'</span> <span class="o">+</span> <span class="n">entry</span> <span class="o">+</span> <span class="s1">'/corr'</span><span class="p">]</span>
|
||||
</span><span id="read_hd5-120"><a href="#read_hd5-120"><span class="linenos">120</span></a> <span class="n">real_data</span> <span class="o">=</span> <span class="n">raw_data</span><span class="p">[:]</span><span class="o">.</span><span class="n">view</span><span class="p">(</span><span class="s2">"complex"</span><span class="p">)</span>
|
||||
|
|
|
|||
|
|
@ -146,7 +146,7 @@
|
|||
</span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a><span class="sd"> Reweighting factors read</span>
|
||||
</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a> <span class="n">known_oqcd_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'1.4'</span><span class="p">,</span> <span class="s1">'1.6'</span><span class="p">,</span> <span class="s1">'2.0'</span><span class="p">]</span>
|
||||
</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">version</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">):</span>
|
||||
</span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a> <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">:</span>
|
||||
</span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Unknown openQCD version defined!'</span><span class="p">)</span>
|
||||
</span><span id="L-52"><a href="#L-52"><span class="linenos"> 52</span></a> <span class="nb">print</span><span class="p">(</span><span class="s2">"Working with openQCD version "</span> <span class="o">+</span> <span class="n">version</span><span class="p">)</span>
|
||||
</span><span id="L-53"><a href="#L-53"><span class="linenos"> 53</span></a> <span class="k">if</span> <span class="s1">'postfix'</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
|
||||
|
|
@ -1460,7 +1460,7 @@
|
|||
</span><span id="read_rwms-48"><a href="#read_rwms-48"><span class="linenos"> 48</span></a><span class="sd"> Reweighting factors read</span>
|
||||
</span><span id="read_rwms-49"><a href="#read_rwms-49"><span class="linenos"> 49</span></a><span class="sd"> """</span>
|
||||
</span><span id="read_rwms-50"><a href="#read_rwms-50"><span class="linenos"> 50</span></a> <span class="n">known_oqcd_versions</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'1.4'</span><span class="p">,</span> <span class="s1">'1.6'</span><span class="p">,</span> <span class="s1">'2.0'</span><span class="p">]</span>
|
||||
</span><span id="read_rwms-51"><a href="#read_rwms-51"><span class="linenos"> 51</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="n">version</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">):</span>
|
||||
</span><span id="read_rwms-51"><a href="#read_rwms-51"><span class="linenos"> 51</span></a> <span class="k">if</span> <span class="n">version</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">known_oqcd_versions</span><span class="p">:</span>
|
||||
</span><span id="read_rwms-52"><a href="#read_rwms-52"><span class="linenos"> 52</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Unknown openQCD version defined!'</span><span class="p">)</span>
|
||||
</span><span id="read_rwms-53"><a href="#read_rwms-53"><span class="linenos"> 53</span></a> <span class="nb">print</span><span class="p">(</span><span class="s2">"Working with openQCD version "</span> <span class="o">+</span> <span class="n">version</span><span class="p">)</span>
|
||||
</span><span id="read_rwms-54"><a href="#read_rwms-54"><span class="linenos"> 54</span></a> <span class="k">if</span> <span class="s1">'postfix'</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
|
||||
|
|
|
|||
|
|
@ -558,7 +558,7 @@
|
|||
</span><span id="L-222"><a href="#L-222"><span class="linenos"> 222</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
|
||||
</span><span id="L-223"><a href="#L-223"><span class="linenos"> 223</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
|
||||
</span><span id="L-224"><a href="#L-224"><span class="linenos"> 224</span></a> <span class="k">if</span> <span class="n">tmp</span> <span class="o"><</span> <span class="mi">0</span><span class="p">:</span>
|
||||
</span><span id="L-225"><a href="#L-225"><span class="linenos"> 225</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="L-225"><a href="#L-225"><span class="linenos"> 225</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="L-226"><a href="#L-226"><span class="linenos"> 226</span></a> <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
|
||||
</span><span id="L-227"><a href="#L-227"><span class="linenos"> 227</span></a> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
|
||||
</span><span id="L-228"><a href="#L-228"><span class="linenos"> 228</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
|
|
@ -627,7 +627,7 @@
|
|||
</span><span id="L-291"><a href="#L-291"><span class="linenos"> 291</span></a> <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
|
||||
</span><span id="L-292"><a href="#L-292"><span class="linenos"> 292</span></a> <span class="c1"># Critical slowing down analysis</span>
|
||||
</span><span id="L-293"><a href="#L-293"><span class="linenos"> 293</span></a> <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o"><=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="L-294"><a href="#L-294"><span class="linenos"> 294</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="L-294"><a href="#L-294"><span class="linenos"> 294</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="L-295"><a href="#L-295"><span class="linenos"> 295</span></a> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
|
||||
</span><span id="L-296"><a href="#L-296"><span class="linenos"> 296</span></a> <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
|
||||
</span><span id="L-297"><a href="#L-297"><span class="linenos"> 297</span></a> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o"><</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">>=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
|
||||
|
|
@ -956,7 +956,7 @@
|
|||
</span><span id="L-620"><a href="#L-620"><span class="linenos"> 620</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">'e_dvalue'</span><span class="p">):</span>
|
||||
</span><span id="L-621"><a href="#L-621"><span class="linenos"> 621</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Run the gamma method first.'</span><span class="p">)</span>
|
||||
</span><span id="L-622"><a href="#L-622"><span class="linenos"> 622</span></a> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
|
||||
</span><span id="L-623"><a href="#L-623"><span class="linenos"> 623</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error is 0.0'</span><span class="p">)</span>
|
||||
</span><span id="L-623"><a href="#L-623"><span class="linenos"> 623</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error is 0.0'</span><span class="p">)</span>
|
||||
</span><span id="L-624"><a href="#L-624"><span class="linenos"> 624</span></a> <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
|
||||
</span><span id="L-625"><a href="#L-625"><span class="linenos"> 625</span></a> <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
|
||||
</span><span id="L-626"><a href="#L-626"><span class="linenos"> 626</span></a> <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
|
||||
|
|
@ -995,7 +995,7 @@
|
|||
</span><span id="L-659"><a href="#L-659"><span class="linenos"> 659</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">'.p'</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
|
||||
</span><span id="L-660"><a href="#L-660"><span class="linenos"> 660</span></a> <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
|
||||
</span><span id="L-661"><a href="#L-661"><span class="linenos"> 661</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
</span><span id="L-662"><a href="#L-662"><span class="linenos"> 662</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Unknown datatype "</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
|
||||
</span><span id="L-662"><a href="#L-662"><span class="linenos"> 662</span></a> <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">"Unknown datatype "</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
|
||||
</span><span id="L-663"><a href="#L-663"><span class="linenos"> 663</span></a>
|
||||
</span><span id="L-664"><a href="#L-664"><span class="linenos"> 664</span></a> <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
|
||||
</span><span id="L-665"><a href="#L-665"><span class="linenos"> 665</span></a><span class="w"> </span><span class="sd">"""Export jackknife samples from the Obs</span>
|
||||
|
|
@ -1012,7 +1012,7 @@
|
|||
</span><span id="L-676"><a href="#L-676"><span class="linenos"> 676</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-677"><a href="#L-677"><span class="linenos"> 677</span></a>
|
||||
</span><span id="L-678"><a href="#L-678"><span class="linenos"> 678</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="L-679"><a href="#L-679"><span class="linenos"> 679</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"'export_jackknife' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="L-679"><a href="#L-679"><span class="linenos"> 679</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"'export_jackknife' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="L-680"><a href="#L-680"><span class="linenos"> 680</span></a>
|
||||
</span><span id="L-681"><a href="#L-681"><span class="linenos"> 681</span></a> <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="L-682"><a href="#L-682"><span class="linenos"> 682</span></a> <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
|
||||
|
|
@ -1047,7 +1047,7 @@
|
|||
</span><span id="L-711"><a href="#L-711"><span class="linenos"> 711</span></a><span class="sd"> should agree with samples from a full bootstrap analysis up to O(1/N).</span>
|
||||
</span><span id="L-712"><a href="#L-712"><span class="linenos"> 712</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-713"><a href="#L-713"><span class="linenos"> 713</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="L-714"><a href="#L-714"><span class="linenos"> 714</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"'export_boostrap' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="L-714"><a href="#L-714"><span class="linenos"> 714</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"'export_boostrap' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="L-715"><a href="#L-715"><span class="linenos"> 715</span></a>
|
||||
</span><span id="L-716"><a href="#L-716"><span class="linenos"> 716</span></a> <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="L-717"><a href="#L-717"><span class="linenos"> 717</span></a> <span class="n">length</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
|
||||
|
|
@ -1603,7 +1603,7 @@
|
|||
</span><span id="L-1267"><a href="#L-1267"><span class="linenos">1267</span></a> <span class="k">if</span> <span class="s1">'man_grad'</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
|
||||
</span><span id="L-1268"><a href="#L-1268"><span class="linenos">1268</span></a> <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'man_grad'</span><span class="p">))</span>
|
||||
</span><span id="L-1269"><a href="#L-1269"><span class="linenos">1269</span></a> <span class="k">if</span> <span class="n">new_values</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">data</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">deriv</span><span class="o">.</span><span class="n">shape</span><span class="p">:</span>
|
||||
</span><span id="L-1270"><a href="#L-1270"><span class="linenos">1270</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Manual derivative does not have correct shape.'</span><span class="p">)</span>
|
||||
</span><span id="L-1270"><a href="#L-1270"><span class="linenos">1270</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Manual derivative does not have correct shape.'</span><span class="p">)</span>
|
||||
</span><span id="L-1271"><a href="#L-1271"><span class="linenos">1271</span></a> <span class="k">elif</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'num_grad'</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||
</span><span id="L-1272"><a href="#L-1272"><span class="linenos">1272</span></a> <span class="k">if</span> <span class="n">multi</span> <span class="o">></span> <span class="mi">0</span><span class="p">:</span>
|
||||
</span><span id="L-1273"><a href="#L-1273"><span class="linenos">1273</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Multi mode currently not supported for numerical derivative'</span><span class="p">)</span>
|
||||
|
|
@ -1669,7 +1669,7 @@
|
|||
</span><span id="L-1333"><a href="#L-1333"><span class="linenos">1333</span></a> <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_grad</span><span class="p">}</span>
|
||||
</span><span id="L-1334"><a href="#L-1334"><span class="linenos">1334</span></a>
|
||||
</span><span id="L-1335"><a href="#L-1335"><span class="linenos">1335</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="n">new_deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
|
||||
</span><span id="L-1336"><a href="#L-1336"><span class="linenos">1336</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'The same name has been used for deltas and covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1336"><a href="#L-1336"><span class="linenos">1336</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'The same name has been used for deltas and covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1337"><a href="#L-1337"><span class="linenos">1337</span></a> <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="L-1338"><a href="#L-1338"><span class="linenos">1338</span></a> <span class="n">new_means</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="L-1339"><a href="#L-1339"><span class="linenos">1339</span></a> <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
|
|
@ -1710,7 +1710,7 @@
|
|||
</span><span id="L-1374"><a href="#L-1374"><span class="linenos">1374</span></a><span class="sd"> Has to be a subset of idx_old.</span>
|
||||
</span><span id="L-1375"><a href="#L-1375"><span class="linenos">1375</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-1376"><a href="#L-1376"><span class="linenos">1376</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">):</span>
|
||||
</span><span id="L-1377"><a href="#L-1377"><span class="linenos">1377</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Length of deltas and idx_old have to be the same: </span><span class="si">%d</span><span class="s1"> != </span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)))</span>
|
||||
</span><span id="L-1377"><a href="#L-1377"><span class="linenos">1377</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Length of deltas and idx_old have to be the same: </span><span class="si">%d</span><span class="s1"> != </span><span class="si">%d</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">deltas</span><span class="p">),</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)))</span>
|
||||
</span><span id="L-1378"><a href="#L-1378"><span class="linenos">1378</span></a> <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx_old</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span> <span class="ow">and</span> <span class="nb">type</span><span class="p">(</span><span class="n">idx_new</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">range</span><span class="p">:</span>
|
||||
</span><span id="L-1379"><a href="#L-1379"><span class="linenos">1379</span></a> <span class="k">if</span> <span class="n">idx_old</span> <span class="o">==</span> <span class="n">idx_new</span><span class="p">:</span>
|
||||
</span><span id="L-1380"><a href="#L-1380"><span class="linenos">1380</span></a> <span class="k">return</span> <span class="n">deltas</span>
|
||||
|
|
@ -1718,7 +1718,7 @@
|
|||
</span><span id="L-1382"><a href="#L-1382"><span class="linenos">1382</span></a> <span class="k">return</span> <span class="n">deltas</span>
|
||||
</span><span id="L-1383"><a href="#L-1383"><span class="linenos">1383</span></a> <span class="n">indices</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">intersect1d</span><span class="p">(</span><span class="n">idx_old</span><span class="p">,</span> <span class="n">idx_new</span><span class="p">,</span> <span class="n">assume_unique</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">return_indices</span><span class="o">=</span><span class="kc">True</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
|
||||
</span><span id="L-1384"><a href="#L-1384"><span class="linenos">1384</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">indices</span><span class="p">)</span> <span class="o"><</span> <span class="nb">len</span><span class="p">(</span><span class="n">idx_new</span><span class="p">):</span>
|
||||
</span><span id="L-1385"><a href="#L-1385"><span class="linenos">1385</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error in _reduce_deltas: Config of idx_new not in idx_old'</span><span class="p">)</span>
|
||||
</span><span id="L-1385"><a href="#L-1385"><span class="linenos">1385</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error in _reduce_deltas: Config of idx_new not in idx_old'</span><span class="p">)</span>
|
||||
</span><span id="L-1386"><a href="#L-1386"><span class="linenos">1386</span></a> <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">deltas</span><span class="p">)[</span><span class="n">indices</span><span class="p">]</span>
|
||||
</span><span id="L-1387"><a href="#L-1387"><span class="linenos">1387</span></a>
|
||||
</span><span id="L-1388"><a href="#L-1388"><span class="linenos">1388</span></a>
|
||||
|
|
@ -1740,12 +1740,12 @@
|
|||
</span><span id="L-1404"><a href="#L-1404"><span class="linenos">1404</span></a> <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="L-1405"><a href="#L-1405"><span class="linenos">1405</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)):</span>
|
||||
</span><span id="L-1406"><a href="#L-1406"><span class="linenos">1406</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
|
||||
</span><span id="L-1407"><a href="#L-1407"><span class="linenos">1407</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error: Not possible to reweight an Obs that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1407"><a href="#L-1407"><span class="linenos">1407</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error: Not possible to reweight an Obs that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1408"><a href="#L-1408"><span class="linenos">1408</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
|
||||
</span><span id="L-1409"><a href="#L-1409"><span class="linenos">1409</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error: Ensembles do not fit'</span><span class="p">)</span>
|
||||
</span><span id="L-1409"><a href="#L-1409"><span class="linenos">1409</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error: Ensembles do not fit'</span><span class="p">)</span>
|
||||
</span><span id="L-1410"><a href="#L-1410"><span class="linenos">1410</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
|
||||
</span><span id="L-1411"><a href="#L-1411"><span class="linenos">1411</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
|
||||
</span><span id="L-1412"><a href="#L-1412"><span class="linenos">1412</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
|
||||
</span><span id="L-1412"><a href="#L-1412"><span class="linenos">1412</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
|
||||
</span><span id="L-1413"><a href="#L-1413"><span class="linenos">1413</span></a> <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="L-1414"><a href="#L-1414"><span class="linenos">1414</span></a> <span class="n">w_deltas</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
</span><span id="L-1415"><a href="#L-1415"><span class="linenos">1415</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
|
||||
|
|
@ -1782,14 +1782,14 @@
|
|||
</span><span id="L-1446"><a href="#L-1446"><span class="linenos">1446</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-1447"><a href="#L-1447"><span class="linenos">1447</span></a>
|
||||
</span><span id="L-1448"><a href="#L-1448"><span class="linenos">1448</span></a> <span class="k">if</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
|
||||
</span><span id="L-1449"><a href="#L-1449"><span class="linenos">1449</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Ensembles do not fit </span><span class="si">{</span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
|
||||
</span><span id="L-1449"><a href="#L-1449"><span class="linenos">1449</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Ensembles do not fit </span><span class="si">{</span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
|
||||
</span><span id="L-1450"><a href="#L-1450"><span class="linenos">1450</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
|
||||
</span><span id="L-1451"><a href="#L-1451"><span class="linenos">1451</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error: Not possible to correlate Obs that contain covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1451"><a href="#L-1451"><span class="linenos">1451</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error: Not possible to correlate Obs that contain covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1452"><a href="#L-1452"><span class="linenos">1452</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
|
||||
</span><span id="L-1453"><a href="#L-1453"><span class="linenos">1453</span></a> <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
|
||||
</span><span id="L-1454"><a href="#L-1454"><span class="linenos">1454</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Shapes of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="L-1454"><a href="#L-1454"><span class="linenos">1454</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Shapes of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="L-1455"><a href="#L-1455"><span class="linenos">1455</span></a> <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
|
||||
</span><span id="L-1456"><a href="#L-1456"><span class="linenos">1456</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'idl of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="L-1456"><a href="#L-1456"><span class="linenos">1456</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'idl of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="L-1457"><a href="#L-1457"><span class="linenos">1457</span></a>
|
||||
</span><span id="L-1458"><a href="#L-1458"><span class="linenos">1458</span></a> <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||
</span><span id="L-1459"><a href="#L-1459"><span class="linenos">1459</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"The first observable is already reweighted."</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
|
||||
|
|
@ -1891,7 +1891,7 @@
|
|||
</span><span id="L-1555"><a href="#L-1555"><span class="linenos">1555</span></a>
|
||||
</span><span id="L-1556"><a href="#L-1556"><span class="linenos">1556</span></a> <span class="n">condn</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cond</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
|
||||
</span><span id="L-1557"><a href="#L-1557"><span class="linenos">1557</span></a> <span class="k">if</span> <span class="n">condn</span> <span class="o">></span> <span class="mf">0.1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">:</span>
|
||||
</span><span id="L-1558"><a href="#L-1558"><span class="linenos">1558</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Cannot invert correlation matrix as its condition number exceeds machine precision (</span><span class="si">{</span><span class="n">condn</span><span class="si">:</span><span class="s2">1.2e</span><span class="si">}</span><span class="s2">)"</span><span class="p">)</span>
|
||||
</span><span id="L-1558"><a href="#L-1558"><span class="linenos">1558</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Cannot invert correlation matrix as its condition number exceeds machine precision (</span><span class="si">{</span><span class="n">condn</span><span class="si">:</span><span class="s2">1.2e</span><span class="si">}</span><span class="s2">)"</span><span class="p">)</span>
|
||||
</span><span id="L-1559"><a href="#L-1559"><span class="linenos">1559</span></a> <span class="k">if</span> <span class="n">condn</span> <span class="o">></span> <span class="mf">1e13</span><span class="p">:</span>
|
||||
</span><span id="L-1560"><a href="#L-1560"><span class="linenos">1560</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Correlation matrix may be ill-conditioned, condition number: {</span><span class="si">%1.2e</span><span class="s2">}"</span> <span class="o">%</span> <span class="p">(</span><span class="n">condn</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
|
||||
</span><span id="L-1561"><a href="#L-1561"><span class="linenos">1561</span></a> <span class="n">chol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
|
||||
|
|
@ -1972,7 +1972,7 @@
|
|||
</span><span id="L-1636"><a href="#L-1636"><span class="linenos">1636</span></a><span class="sd"> Number of eigenvalues to be left substantially unchanged</span>
|
||||
</span><span id="L-1637"><a href="#L-1637"><span class="linenos">1637</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-1638"><a href="#L-1638"><span class="linenos">1638</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="mi">2</span> <span class="o"><</span> <span class="n">E</span> <span class="o"><</span> <span class="n">corr</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
|
||||
</span><span id="L-1639"><a href="#L-1639"><span class="linenos">1639</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">"'E' has to be between 2 and the dimension of the correlation matrix minus 1 (</span><span class="si">{</span><span class="n">corr</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">1</span><span class="si">}</span><span class="s2">)."</span><span class="p">)</span>
|
||||
</span><span id="L-1639"><a href="#L-1639"><span class="linenos">1639</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"'E' has to be between 2 and the dimension of the correlation matrix minus 1 (</span><span class="si">{</span><span class="n">corr</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">1</span><span class="si">}</span><span class="s2">)."</span><span class="p">)</span>
|
||||
</span><span id="L-1640"><a href="#L-1640"><span class="linenos">1640</span></a> <span class="n">vals</span><span class="p">,</span> <span class="n">vec</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">eigh</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
|
||||
</span><span id="L-1641"><a href="#L-1641"><span class="linenos">1641</span></a> <span class="n">lambda_min</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">mean</span><span class="p">(</span><span class="n">vals</span><span class="p">[:</span><span class="o">-</span><span class="n">E</span><span class="p">])</span>
|
||||
</span><span id="L-1642"><a href="#L-1642"><span class="linenos">1642</span></a> <span class="n">vals</span><span class="p">[</span><span class="n">vals</span> <span class="o"><</span> <span class="n">lambda_min</span><span class="p">]</span> <span class="o">=</span> <span class="n">lambda_min</span>
|
||||
|
|
@ -2104,9 +2104,9 @@
|
|||
</span><span id="L-1768"><a href="#L-1768"><span class="linenos">1768</span></a><span class="sd"> """</span>
|
||||
</span><span id="L-1769"><a href="#L-1769"><span class="linenos">1769</span></a> <span class="n">replist</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">list_of_obs</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">]</span>
|
||||
</span><span id="L-1770"><a href="#L-1770"><span class="linenos">1770</span></a> <span class="k">if</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">replist</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
|
||||
</span><span id="L-1771"><a href="#L-1771"><span class="linenos">1771</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
|
||||
</span><span id="L-1771"><a href="#L-1771"><span class="linenos">1771</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
|
||||
</span><span id="L-1772"><a href="#L-1772"><span class="linenos">1772</span></a> <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">]):</span>
|
||||
</span><span id="L-1773"><a href="#L-1773"><span class="linenos">1773</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Not possible to merge data that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1773"><a href="#L-1773"><span class="linenos">1773</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Not possible to merge data that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="L-1774"><a href="#L-1774"><span class="linenos">1774</span></a> <span class="n">new_dict</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
</span><span id="L-1775"><a href="#L-1775"><span class="linenos">1775</span></a> <span class="n">idl_dict</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
</span><span id="L-1776"><a href="#L-1776"><span class="linenos">1776</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">:</span>
|
||||
|
|
@ -2157,7 +2157,7 @@
|
|||
</span><span id="L-1821"><a href="#L-1821"><span class="linenos">1821</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)):</span>
|
||||
</span><span id="L-1822"><a href="#L-1822"><span class="linenos">1822</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">covobs_to_obs</span><span class="p">(</span><span class="n">Covobs</span><span class="p">(</span><span class="n">means</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="n">i</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">grad</span><span class="p">)))</span>
|
||||
</span><span id="L-1823"><a href="#L-1823"><span class="linenos">1823</span></a> <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">):</span>
|
||||
</span><span id="L-1824"><a href="#L-1824"><span class="linenos">1824</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'You have to provide </span><span class="si">%d</span><span class="s1"> mean values!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
|
||||
</span><span id="L-1824"><a href="#L-1824"><span class="linenos">1824</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'You have to provide </span><span class="si">%d</span><span class="s1"> mean values!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
|
||||
</span><span id="L-1825"><a href="#L-1825"><span class="linenos">1825</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="L-1826"><a href="#L-1826"><span class="linenos">1826</span></a> <span class="k">return</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="L-1827"><a href="#L-1827"><span class="linenos">1827</span></a> <span class="k">return</span> <span class="n">ol</span>
|
||||
|
|
@ -2173,7 +2173,7 @@
|
|||
</span><span id="L-1837"><a href="#L-1837"><span class="linenos">1837</span></a>
|
||||
</span><span id="L-1838"><a href="#L-1838"><span class="linenos">1838</span></a> <span class="n">gap</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">gaps</span><span class="p">)</span>
|
||||
</span><span id="L-1839"><a href="#L-1839"><span class="linenos">1839</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">([</span><span class="n">gi</span> <span class="o">%</span> <span class="n">gap</span> <span class="o">==</span> <span class="mi">0</span> <span class="k">for</span> <span class="n">gi</span> <span class="ow">in</span> <span class="n">gaps</span><span class="p">]):</span>
|
||||
</span><span id="L-1840"><a href="#L-1840"><span class="linenos">1840</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Replica for ensemble </span><span class="si">{</span><span class="n">e_name</span><span class="si">}</span><span class="s2"> do not have a common spacing."</span><span class="p">,</span> <span class="n">gaps</span><span class="p">)</span>
|
||||
</span><span id="L-1840"><a href="#L-1840"><span class="linenos">1840</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Replica for ensemble </span><span class="si">{</span><span class="n">e_name</span><span class="si">}</span><span class="s2"> do not have a common spacing."</span><span class="p">,</span> <span class="n">gaps</span><span class="p">)</span>
|
||||
</span><span id="L-1841"><a href="#L-1841"><span class="linenos">1841</span></a>
|
||||
</span><span id="L-1842"><a href="#L-1842"><span class="linenos">1842</span></a> <span class="k">return</span> <span class="n">gap</span>
|
||||
</span><span id="L-1843"><a href="#L-1843"><span class="linenos">1843</span></a>
|
||||
|
|
@ -2413,7 +2413,7 @@
|
|||
</span><span id="Obs-223"><a href="#Obs-223"><span class="linenos">223</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
|
||||
</span><span id="Obs-224"><a href="#Obs-224"><span class="linenos">224</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
|
||||
</span><span id="Obs-225"><a href="#Obs-225"><span class="linenos">225</span></a> <span class="k">if</span> <span class="n">tmp</span> <span class="o"><</span> <span class="mi">0</span><span class="p">:</span>
|
||||
</span><span id="Obs-226"><a href="#Obs-226"><span class="linenos">226</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="Obs-226"><a href="#Obs-226"><span class="linenos">226</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="Obs-227"><a href="#Obs-227"><span class="linenos">227</span></a> <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
|
||||
</span><span id="Obs-228"><a href="#Obs-228"><span class="linenos">228</span></a> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
|
||||
</span><span id="Obs-229"><a href="#Obs-229"><span class="linenos">229</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
|
|
@ -2482,7 +2482,7 @@
|
|||
</span><span id="Obs-292"><a href="#Obs-292"><span class="linenos">292</span></a> <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
|
||||
</span><span id="Obs-293"><a href="#Obs-293"><span class="linenos">293</span></a> <span class="c1"># Critical slowing down analysis</span>
|
||||
</span><span id="Obs-294"><a href="#Obs-294"><span class="linenos">294</span></a> <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o"><=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="Obs-295"><a href="#Obs-295"><span class="linenos">295</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="Obs-295"><a href="#Obs-295"><span class="linenos">295</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="Obs-296"><a href="#Obs-296"><span class="linenos">296</span></a> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
|
||||
</span><span id="Obs-297"><a href="#Obs-297"><span class="linenos">297</span></a> <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
|
||||
</span><span id="Obs-298"><a href="#Obs-298"><span class="linenos">298</span></a> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o"><</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">>=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
|
||||
|
|
@ -2811,7 +2811,7 @@
|
|||
</span><span id="Obs-621"><a href="#Obs-621"><span class="linenos">621</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">'e_dvalue'</span><span class="p">):</span>
|
||||
</span><span id="Obs-622"><a href="#Obs-622"><span class="linenos">622</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Run the gamma method first.'</span><span class="p">)</span>
|
||||
</span><span id="Obs-623"><a href="#Obs-623"><span class="linenos">623</span></a> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
|
||||
</span><span id="Obs-624"><a href="#Obs-624"><span class="linenos">624</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error is 0.0'</span><span class="p">)</span>
|
||||
</span><span id="Obs-624"><a href="#Obs-624"><span class="linenos">624</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error is 0.0'</span><span class="p">)</span>
|
||||
</span><span id="Obs-625"><a href="#Obs-625"><span class="linenos">625</span></a> <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
|
||||
</span><span id="Obs-626"><a href="#Obs-626"><span class="linenos">626</span></a> <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
|
||||
</span><span id="Obs-627"><a href="#Obs-627"><span class="linenos">627</span></a> <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
|
||||
|
|
@ -2850,7 +2850,7 @@
|
|||
</span><span id="Obs-660"><a href="#Obs-660"><span class="linenos">660</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">'.p'</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
|
||||
</span><span id="Obs-661"><a href="#Obs-661"><span class="linenos">661</span></a> <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
|
||||
</span><span id="Obs-662"><a href="#Obs-662"><span class="linenos">662</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
</span><span id="Obs-663"><a href="#Obs-663"><span class="linenos">663</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Unknown datatype "</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
|
||||
</span><span id="Obs-663"><a href="#Obs-663"><span class="linenos">663</span></a> <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">"Unknown datatype "</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
|
||||
</span><span id="Obs-664"><a href="#Obs-664"><span class="linenos">664</span></a>
|
||||
</span><span id="Obs-665"><a href="#Obs-665"><span class="linenos">665</span></a> <span class="k">def</span> <span class="nf">export_jackknife</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
|
||||
</span><span id="Obs-666"><a href="#Obs-666"><span class="linenos">666</span></a><span class="w"> </span><span class="sd">"""Export jackknife samples from the Obs</span>
|
||||
|
|
@ -2867,7 +2867,7 @@
|
|||
</span><span id="Obs-677"><a href="#Obs-677"><span class="linenos">677</span></a><span class="sd"> """</span>
|
||||
</span><span id="Obs-678"><a href="#Obs-678"><span class="linenos">678</span></a>
|
||||
</span><span id="Obs-679"><a href="#Obs-679"><span class="linenos">679</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="Obs-680"><a href="#Obs-680"><span class="linenos">680</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"'export_jackknife' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs-680"><a href="#Obs-680"><span class="linenos">680</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"'export_jackknife' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs-681"><a href="#Obs-681"><span class="linenos">681</span></a>
|
||||
</span><span id="Obs-682"><a href="#Obs-682"><span class="linenos">682</span></a> <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="Obs-683"><a href="#Obs-683"><span class="linenos">683</span></a> <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
|
||||
|
|
@ -2902,7 +2902,7 @@
|
|||
</span><span id="Obs-712"><a href="#Obs-712"><span class="linenos">712</span></a><span class="sd"> should agree with samples from a full bootstrap analysis up to O(1/N).</span>
|
||||
</span><span id="Obs-713"><a href="#Obs-713"><span class="linenos">713</span></a><span class="sd"> """</span>
|
||||
</span><span id="Obs-714"><a href="#Obs-714"><span class="linenos">714</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="Obs-715"><a href="#Obs-715"><span class="linenos">715</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"'export_boostrap' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs-715"><a href="#Obs-715"><span class="linenos">715</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"'export_boostrap' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs-716"><a href="#Obs-716"><span class="linenos">716</span></a>
|
||||
</span><span id="Obs-717"><a href="#Obs-717"><span class="linenos">717</span></a> <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="Obs-718"><a href="#Obs-718"><span class="linenos">718</span></a> <span class="n">length</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
|
||||
|
|
@ -3610,7 +3610,7 @@ list of ranges or lists on which the samples are defined</li>
|
|||
</span><span id="Obs.gamma_method-223"><a href="#Obs.gamma_method-223"><span class="linenos">223</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
|
||||
</span><span id="Obs.gamma_method-224"><a href="#Obs.gamma_method-224"><span class="linenos">224</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
|
||||
</span><span id="Obs.gamma_method-225"><a href="#Obs.gamma_method-225"><span class="linenos">225</span></a> <span class="k">if</span> <span class="n">tmp</span> <span class="o"><</span> <span class="mi">0</span><span class="p">:</span>
|
||||
</span><span id="Obs.gamma_method-226"><a href="#Obs.gamma_method-226"><span class="linenos">226</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="Obs.gamma_method-226"><a href="#Obs.gamma_method-226"><span class="linenos">226</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="Obs.gamma_method-227"><a href="#Obs.gamma_method-227"><span class="linenos">227</span></a> <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
|
||||
</span><span id="Obs.gamma_method-228"><a href="#Obs.gamma_method-228"><span class="linenos">228</span></a> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
|
||||
</span><span id="Obs.gamma_method-229"><a href="#Obs.gamma_method-229"><span class="linenos">229</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
|
|
@ -3679,7 +3679,7 @@ list of ranges or lists on which the samples are defined</li>
|
|||
</span><span id="Obs.gamma_method-292"><a href="#Obs.gamma_method-292"><span class="linenos">292</span></a> <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
|
||||
</span><span id="Obs.gamma_method-293"><a href="#Obs.gamma_method-293"><span class="linenos">293</span></a> <span class="c1"># Critical slowing down analysis</span>
|
||||
</span><span id="Obs.gamma_method-294"><a href="#Obs.gamma_method-294"><span class="linenos">294</span></a> <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o"><=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="Obs.gamma_method-295"><a href="#Obs.gamma_method-295"><span class="linenos">295</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="Obs.gamma_method-295"><a href="#Obs.gamma_method-295"><span class="linenos">295</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="Obs.gamma_method-296"><a href="#Obs.gamma_method-296"><span class="linenos">296</span></a> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
|
||||
</span><span id="Obs.gamma_method-297"><a href="#Obs.gamma_method-297"><span class="linenos">297</span></a> <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
|
||||
</span><span id="Obs.gamma_method-298"><a href="#Obs.gamma_method-298"><span class="linenos">298</span></a> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o"><</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">>=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
|
||||
|
|
@ -3813,7 +3813,7 @@ of the autocorrelation function (default True)</li>
|
|||
</span><span id="Obs.gm-223"><a href="#Obs.gm-223"><span class="linenos">223</span></a> <span class="n">tmp</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">kwarg_name</span><span class="p">)</span>
|
||||
</span><span id="Obs.gm-224"><a href="#Obs.gm-224"><span class="linenos">224</span></a> <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">tmp</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
|
||||
</span><span id="Obs.gm-225"><a href="#Obs.gm-225"><span class="linenos">225</span></a> <span class="k">if</span> <span class="n">tmp</span> <span class="o"><</span> <span class="mi">0</span><span class="p">:</span>
|
||||
</span><span id="Obs.gm-226"><a href="#Obs.gm-226"><span class="linenos">226</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="Obs.gm-226"><a href="#Obs.gm-226"><span class="linenos">226</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">kwarg_name</span> <span class="o">+</span> <span class="s1">' has to be larger or equal to 0.'</span><span class="p">)</span>
|
||||
</span><span id="Obs.gm-227"><a href="#Obs.gm-227"><span class="linenos">227</span></a> <span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_names</span><span class="p">):</span>
|
||||
</span><span id="Obs.gm-228"><a href="#Obs.gm-228"><span class="linenos">228</span></a> <span class="nb">getattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">kwarg_name</span><span class="p">)[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">=</span> <span class="n">tmp</span>
|
||||
</span><span id="Obs.gm-229"><a href="#Obs.gm-229"><span class="linenos">229</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
|
|
@ -3882,7 +3882,7 @@ of the autocorrelation function (default True)</li>
|
|||
</span><span id="Obs.gm-292"><a href="#Obs.gm-292"><span class="linenos">292</span></a> <span class="n">texp</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">tau_exp</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span>
|
||||
</span><span id="Obs.gm-293"><a href="#Obs.gm-293"><span class="linenos">293</span></a> <span class="c1"># Critical slowing down analysis</span>
|
||||
</span><span id="Obs.gm-294"><a href="#Obs.gm-294"><span class="linenos">294</span></a> <span class="k">if</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o"><=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="Obs.gm-295"><a href="#Obs.gm-295"><span class="linenos">295</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="Obs.gm-295"><a href="#Obs.gm-295"><span class="linenos">295</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"Need at least 8 samples for tau_exp error analysis"</span><span class="p">)</span>
|
||||
</span><span id="Obs.gm-296"><a href="#Obs.gm-296"><span class="linenos">296</span></a> <span class="k">for</span> <span class="n">n</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span><span class="p">):</span>
|
||||
</span><span id="Obs.gm-297"><a href="#Obs.gm-297"><span class="linenos">297</span></a> <span class="n">_compute_drho</span><span class="p">(</span><span class="n">n</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
|
||||
</span><span id="Obs.gm-298"><a href="#Obs.gm-298"><span class="linenos">298</span></a> <span class="k">if</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_rho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">]</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">N_sigma</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">][</span><span class="n">n</span><span class="p">])</span> <span class="o"><</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">n</span> <span class="o">>=</span> <span class="n">w_max</span> <span class="o">//</span> <span class="mi">2</span> <span class="o">-</span> <span class="mi">2</span><span class="p">:</span>
|
||||
|
|
@ -4409,7 +4409,7 @@ show expanded history for irregular Monte Carlo chains (default: True).</li>
|
|||
</span><span id="Obs.plot_piechart-621"><a href="#Obs.plot_piechart-621"><span class="linenos">621</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">'e_dvalue'</span><span class="p">):</span>
|
||||
</span><span id="Obs.plot_piechart-622"><a href="#Obs.plot_piechart-622"><span class="linenos">622</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Run the gamma method first.'</span><span class="p">)</span>
|
||||
</span><span id="Obs.plot_piechart-623"><a href="#Obs.plot_piechart-623"><span class="linenos">623</span></a> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isclose</span><span class="p">(</span><span class="mf">0.0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span><span class="p">,</span> <span class="n">atol</span><span class="o">=</span><span class="mf">1e-15</span><span class="p">):</span>
|
||||
</span><span id="Obs.plot_piechart-624"><a href="#Obs.plot_piechart-624"><span class="linenos">624</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error is 0.0'</span><span class="p">)</span>
|
||||
</span><span id="Obs.plot_piechart-624"><a href="#Obs.plot_piechart-624"><span class="linenos">624</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error is 0.0'</span><span class="p">)</span>
|
||||
</span><span id="Obs.plot_piechart-625"><a href="#Obs.plot_piechart-625"><span class="linenos">625</span></a> <span class="n">labels</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">e_names</span>
|
||||
</span><span id="Obs.plot_piechart-626"><a href="#Obs.plot_piechart-626"><span class="linenos">626</span></a> <span class="n">sizes</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">e_dvalue</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">**</span> <span class="mi">2</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">labels</span><span class="p">]</span> <span class="o">/</span> <span class="bp">self</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">**</span> <span class="mi">2</span>
|
||||
</span><span id="Obs.plot_piechart-627"><a href="#Obs.plot_piechart-627"><span class="linenos">627</span></a> <span class="n">fig1</span><span class="p">,</span> <span class="n">ax1</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">subplots</span><span class="p">()</span>
|
||||
|
|
@ -4474,7 +4474,7 @@ saves the figure to a file named 'save' if.</li>
|
|||
</span><span id="Obs.dump-660"><a href="#Obs.dump-660"><span class="linenos">660</span></a> <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s1">'.p'</span><span class="p">,</span> <span class="s1">'wb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fb</span><span class="p">:</span>
|
||||
</span><span id="Obs.dump-661"><a href="#Obs.dump-661"><span class="linenos">661</span></a> <span class="n">pickle</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fb</span><span class="p">)</span>
|
||||
</span><span id="Obs.dump-662"><a href="#Obs.dump-662"><span class="linenos">662</span></a> <span class="k">else</span><span class="p">:</span>
|
||||
</span><span id="Obs.dump-663"><a href="#Obs.dump-663"><span class="linenos">663</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Unknown datatype "</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
|
||||
</span><span id="Obs.dump-663"><a href="#Obs.dump-663"><span class="linenos">663</span></a> <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">"Unknown datatype "</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">datatype</span><span class="p">))</span>
|
||||
</span></pre></div>
|
||||
|
||||
|
||||
|
|
@ -4523,7 +4523,7 @@ specifies a custom path for the file (default '.')</li>
|
|||
</span><span id="Obs.export_jackknife-677"><a href="#Obs.export_jackknife-677"><span class="linenos">677</span></a><span class="sd"> """</span>
|
||||
</span><span id="Obs.export_jackknife-678"><a href="#Obs.export_jackknife-678"><span class="linenos">678</span></a>
|
||||
</span><span id="Obs.export_jackknife-679"><a href="#Obs.export_jackknife-679"><span class="linenos">679</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="Obs.export_jackknife-680"><a href="#Obs.export_jackknife-680"><span class="linenos">680</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"'export_jackknife' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs.export_jackknife-680"><a href="#Obs.export_jackknife-680"><span class="linenos">680</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"'export_jackknife' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs.export_jackknife-681"><a href="#Obs.export_jackknife-681"><span class="linenos">681</span></a>
|
||||
</span><span id="Obs.export_jackknife-682"><a href="#Obs.export_jackknife-682"><span class="linenos">682</span></a> <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="Obs.export_jackknife-683"><a href="#Obs.export_jackknife-683"><span class="linenos">683</span></a> <span class="n">full_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">deltas</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">r_values</span><span class="p">[</span><span class="n">name</span><span class="p">]</span>
|
||||
|
|
@ -4587,7 +4587,7 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
|
|||
</span><span id="Obs.export_bootstrap-712"><a href="#Obs.export_bootstrap-712"><span class="linenos">712</span></a><span class="sd"> should agree with samples from a full bootstrap analysis up to O(1/N).</span>
|
||||
</span><span id="Obs.export_bootstrap-713"><a href="#Obs.export_bootstrap-713"><span class="linenos">713</span></a><span class="sd"> """</span>
|
||||
</span><span id="Obs.export_bootstrap-714"><a href="#Obs.export_bootstrap-714"><span class="linenos">714</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="Obs.export_bootstrap-715"><a href="#Obs.export_bootstrap-715"><span class="linenos">715</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"'export_boostrap' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs.export_bootstrap-715"><a href="#Obs.export_bootstrap-715"><span class="linenos">715</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">"'export_boostrap' is only implemented for Obs defined on one ensemble and replicum."</span><span class="p">)</span>
|
||||
</span><span id="Obs.export_bootstrap-716"><a href="#Obs.export_bootstrap-716"><span class="linenos">716</span></a>
|
||||
</span><span id="Obs.export_bootstrap-717"><a href="#Obs.export_bootstrap-717"><span class="linenos">717</span></a> <span class="n">name</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">names</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="Obs.export_bootstrap-718"><a href="#Obs.export_bootstrap-718"><span class="linenos">718</span></a> <span class="n">length</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">N</span>
|
||||
|
|
@ -5488,7 +5488,7 @@ should agree with samples from a full bootstrap analysis up to O(1/N).</li>
|
|||
</span><span id="derived_observable-1268"><a href="#derived_observable-1268"><span class="linenos">1268</span></a> <span class="k">if</span> <span class="s1">'man_grad'</span> <span class="ow">in</span> <span class="n">kwargs</span><span class="p">:</span>
|
||||
</span><span id="derived_observable-1269"><a href="#derived_observable-1269"><span class="linenos">1269</span></a> <span class="n">deriv</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">(</span><span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'man_grad'</span><span class="p">))</span>
|
||||
</span><span id="derived_observable-1270"><a href="#derived_observable-1270"><span class="linenos">1270</span></a> <span class="k">if</span> <span class="n">new_values</span><span class="o">.</span><span class="n">shape</span> <span class="o">+</span> <span class="n">data</span><span class="o">.</span><span class="n">shape</span> <span class="o">!=</span> <span class="n">deriv</span><span class="o">.</span><span class="n">shape</span><span class="p">:</span>
|
||||
</span><span id="derived_observable-1271"><a href="#derived_observable-1271"><span class="linenos">1271</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Manual derivative does not have correct shape.'</span><span class="p">)</span>
|
||||
</span><span id="derived_observable-1271"><a href="#derived_observable-1271"><span class="linenos">1271</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Manual derivative does not have correct shape.'</span><span class="p">)</span>
|
||||
</span><span id="derived_observable-1272"><a href="#derived_observable-1272"><span class="linenos">1272</span></a> <span class="k">elif</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'num_grad'</span><span class="p">)</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||
</span><span id="derived_observable-1273"><a href="#derived_observable-1273"><span class="linenos">1273</span></a> <span class="k">if</span> <span class="n">multi</span> <span class="o">></span> <span class="mi">0</span><span class="p">:</span>
|
||||
</span><span id="derived_observable-1274"><a href="#derived_observable-1274"><span class="linenos">1274</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Multi mode currently not supported for numerical derivative'</span><span class="p">)</span>
|
||||
|
|
@ -5554,7 +5554,7 @@ should agree with samples from a full bootstrap analysis up to O(1/N).</li>
|
|||
</span><span id="derived_observable-1334"><a href="#derived_observable-1334"><span class="linenos">1334</span></a> <span class="n">new_covobs</span> <span class="o">=</span> <span class="p">{</span><span class="n">name</span><span class="p">:</span> <span class="n">Covobs</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="n">allcov</span><span class="p">[</span><span class="n">name</span><span class="p">],</span> <span class="n">name</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">new_grad</span><span class="p">[</span><span class="n">name</span><span class="p">])</span> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_grad</span><span class="p">}</span>
|
||||
</span><span id="derived_observable-1335"><a href="#derived_observable-1335"><span class="linenos">1335</span></a>
|
||||
</span><span id="derived_observable-1336"><a href="#derived_observable-1336"><span class="linenos">1336</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">new_covobs</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">isdisjoint</span><span class="p">(</span><span class="n">new_deltas</span><span class="o">.</span><span class="n">keys</span><span class="p">()):</span>
|
||||
</span><span id="derived_observable-1337"><a href="#derived_observable-1337"><span class="linenos">1337</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'The same name has been used for deltas and covobs!'</span><span class="p">)</span>
|
||||
</span><span id="derived_observable-1337"><a href="#derived_observable-1337"><span class="linenos">1337</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'The same name has been used for deltas and covobs!'</span><span class="p">)</span>
|
||||
</span><span id="derived_observable-1338"><a href="#derived_observable-1338"><span class="linenos">1338</span></a> <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="derived_observable-1339"><a href="#derived_observable-1339"><span class="linenos">1339</span></a> <span class="n">new_means</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="derived_observable-1340"><a href="#derived_observable-1340"><span class="linenos">1340</span></a> <span class="n">new_idl</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
|
|
@ -5640,12 +5640,12 @@ functions. For the ratio of two observables one can e.g. use</p>
|
|||
</span><span id="reweight-1405"><a href="#reweight-1405"><span class="linenos">1405</span></a> <span class="n">result</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="reweight-1406"><a href="#reweight-1406"><span class="linenos">1406</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">)):</span>
|
||||
</span><span id="reweight-1407"><a href="#reweight-1407"><span class="linenos">1407</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
|
||||
</span><span id="reweight-1408"><a href="#reweight-1408"><span class="linenos">1408</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error: Not possible to reweight an Obs that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="reweight-1408"><a href="#reweight-1408"><span class="linenos">1408</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error: Not possible to reweight an Obs that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="reweight-1409"><a href="#reweight-1409"><span class="linenos">1409</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">)</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
|
||||
</span><span id="reweight-1410"><a href="#reweight-1410"><span class="linenos">1410</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error: Ensembles do not fit'</span><span class="p">)</span>
|
||||
</span><span id="reweight-1410"><a href="#reweight-1410"><span class="linenos">1410</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error: Ensembles do not fit'</span><span class="p">)</span>
|
||||
</span><span id="reweight-1411"><a href="#reweight-1411"><span class="linenos">1411</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
|
||||
</span><span id="reweight-1412"><a href="#reweight-1412"><span class="linenos">1412</span></a> <span class="k">if</span> <span class="ow">not</span> <span class="nb">set</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">])</span><span class="o">.</span><span class="n">issubset</span><span class="p">(</span><span class="n">weight</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]):</span>
|
||||
</span><span id="reweight-1413"><a href="#reweight-1413"><span class="linenos">1413</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
|
||||
</span><span id="reweight-1413"><a href="#reweight-1413"><span class="linenos">1413</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'obs[</span><span class="si">%d</span><span class="s1">] has to be defined on a subset of the configs in weight.idl[</span><span class="si">%s</span><span class="s1">]!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">name</span><span class="p">))</span>
|
||||
</span><span id="reweight-1414"><a href="#reweight-1414"><span class="linenos">1414</span></a> <span class="n">new_samples</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
</span><span id="reweight-1415"><a href="#reweight-1415"><span class="linenos">1415</span></a> <span class="n">w_deltas</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
</span><span id="reweight-1416"><a href="#reweight-1416"><span class="linenos">1416</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs</span><span class="p">[</span><span class="n">i</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
|
||||
|
|
@ -5713,14 +5713,14 @@ on the configurations in obs[i].idl. Default False.</li>
|
|||
</span><span id="correlate-1447"><a href="#correlate-1447"><span class="linenos">1447</span></a><span class="sd"> """</span>
|
||||
</span><span id="correlate-1448"><a href="#correlate-1448"><span class="linenos">1448</span></a>
|
||||
</span><span id="correlate-1449"><a href="#correlate-1449"><span class="linenos">1449</span></a> <span class="k">if</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">):</span>
|
||||
</span><span id="correlate-1450"><a href="#correlate-1450"><span class="linenos">1450</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Ensembles do not fit </span><span class="si">{</span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
|
||||
</span><span id="correlate-1450"><a href="#correlate-1450"><span class="linenos">1450</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Ensembles do not fit </span><span class="si">{</span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="nb">set</span><span class="p">(</span><span class="nb">sorted</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">names</span><span class="p">))</span><span class="si">}</span><span class="s2">"</span><span class="p">)</span>
|
||||
</span><span id="correlate-1451"><a href="#correlate-1451"><span class="linenos">1451</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_a</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">len</span><span class="p">(</span><span class="n">obs_b</span><span class="o">.</span><span class="n">cov_names</span><span class="p">):</span>
|
||||
</span><span id="correlate-1452"><a href="#correlate-1452"><span class="linenos">1452</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Error: Not possible to correlate Obs that contain covobs!'</span><span class="p">)</span>
|
||||
</span><span id="correlate-1452"><a href="#correlate-1452"><span class="linenos">1452</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Error: Not possible to correlate Obs that contain covobs!'</span><span class="p">)</span>
|
||||
</span><span id="correlate-1453"><a href="#correlate-1453"><span class="linenos">1453</span></a> <span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">names</span><span class="p">:</span>
|
||||
</span><span id="correlate-1454"><a href="#correlate-1454"><span class="linenos">1454</span></a> <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
|
||||
</span><span id="correlate-1455"><a href="#correlate-1455"><span class="linenos">1455</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Shapes of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="correlate-1455"><a href="#correlate-1455"><span class="linenos">1455</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Shapes of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="correlate-1456"><a href="#correlate-1456"><span class="linenos">1456</span></a> <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">!=</span> <span class="n">obs_b</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]:</span>
|
||||
</span><span id="correlate-1457"><a href="#correlate-1457"><span class="linenos">1457</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'idl of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="correlate-1457"><a href="#correlate-1457"><span class="linenos">1457</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'idl of ensemble'</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="s1">'do not fit'</span><span class="p">)</span>
|
||||
</span><span id="correlate-1458"><a href="#correlate-1458"><span class="linenos">1458</span></a>
|
||||
</span><span id="correlate-1459"><a href="#correlate-1459"><span class="linenos">1459</span></a> <span class="k">if</span> <span class="n">obs_a</span><span class="o">.</span><span class="n">reweighted</span> <span class="ow">is</span> <span class="kc">True</span><span class="p">:</span>
|
||||
</span><span id="correlate-1460"><a href="#correlate-1460"><span class="linenos">1460</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"The first observable is already reweighted."</span><span class="p">,</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
|
||||
|
|
@ -5903,7 +5903,7 @@ This construction ensures that the estimated covariance matrix is positive semi-
|
|||
</span><span id="invert_corr_cov_cholesky-1556"><a href="#invert_corr_cov_cholesky-1556"><span class="linenos">1556</span></a>
|
||||
</span><span id="invert_corr_cov_cholesky-1557"><a href="#invert_corr_cov_cholesky-1557"><span class="linenos">1557</span></a> <span class="n">condn</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cond</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
|
||||
</span><span id="invert_corr_cov_cholesky-1558"><a href="#invert_corr_cov_cholesky-1558"><span class="linenos">1558</span></a> <span class="k">if</span> <span class="n">condn</span> <span class="o">></span> <span class="mf">0.1</span> <span class="o">/</span> <span class="n">np</span><span class="o">.</span><span class="n">finfo</span><span class="p">(</span><span class="nb">float</span><span class="p">)</span><span class="o">.</span><span class="n">eps</span><span class="p">:</span>
|
||||
</span><span id="invert_corr_cov_cholesky-1559"><a href="#invert_corr_cov_cholesky-1559"><span class="linenos">1559</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Cannot invert correlation matrix as its condition number exceeds machine precision (</span><span class="si">{</span><span class="n">condn</span><span class="si">:</span><span class="s2">1.2e</span><span class="si">}</span><span class="s2">)"</span><span class="p">)</span>
|
||||
</span><span id="invert_corr_cov_cholesky-1559"><a href="#invert_corr_cov_cholesky-1559"><span class="linenos">1559</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">"Cannot invert correlation matrix as its condition number exceeds machine precision (</span><span class="si">{</span><span class="n">condn</span><span class="si">:</span><span class="s2">1.2e</span><span class="si">}</span><span class="s2">)"</span><span class="p">)</span>
|
||||
</span><span id="invert_corr_cov_cholesky-1560"><a href="#invert_corr_cov_cholesky-1560"><span class="linenos">1560</span></a> <span class="k">if</span> <span class="n">condn</span> <span class="o">></span> <span class="mf">1e13</span><span class="p">:</span>
|
||||
</span><span id="invert_corr_cov_cholesky-1561"><a href="#invert_corr_cov_cholesky-1561"><span class="linenos">1561</span></a> <span class="n">warnings</span><span class="o">.</span><span class="n">warn</span><span class="p">(</span><span class="s2">"Correlation matrix may be ill-conditioned, condition number: {</span><span class="si">%1.2e</span><span class="s2">}"</span> <span class="o">%</span> <span class="p">(</span><span class="n">condn</span><span class="p">),</span> <span class="ne">RuntimeWarning</span><span class="p">)</span>
|
||||
</span><span id="invert_corr_cov_cholesky-1562"><a href="#invert_corr_cov_cholesky-1562"><span class="linenos">1562</span></a> <span class="n">chol</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">linalg</span><span class="o">.</span><span class="n">cholesky</span><span class="p">(</span><span class="n">corr</span><span class="p">)</span>
|
||||
|
|
@ -6185,9 +6185,9 @@ chain to be reconstructed.</li>
|
|||
</span><span id="merge_obs-1769"><a href="#merge_obs-1769"><span class="linenos">1769</span></a><span class="sd"> """</span>
|
||||
</span><span id="merge_obs-1770"><a href="#merge_obs-1770"><span class="linenos">1770</span></a> <span class="n">replist</span> <span class="o">=</span> <span class="p">[</span><span class="n">item</span> <span class="k">for</span> <span class="n">obs</span> <span class="ow">in</span> <span class="n">list_of_obs</span> <span class="k">for</span> <span class="n">item</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">names</span><span class="p">]</span>
|
||||
</span><span id="merge_obs-1771"><a href="#merge_obs-1771"><span class="linenos">1771</span></a> <span class="k">if</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">replist</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span> <span class="ow">is</span> <span class="kc">False</span><span class="p">:</span>
|
||||
</span><span id="merge_obs-1772"><a href="#merge_obs-1772"><span class="linenos">1772</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
|
||||
</span><span id="merge_obs-1772"><a href="#merge_obs-1772"><span class="linenos">1772</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'list_of_obs contains duplicate replica: </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">replist</span><span class="p">)))</span>
|
||||
</span><span id="merge_obs-1773"><a href="#merge_obs-1773"><span class="linenos">1773</span></a> <span class="k">if</span> <span class="nb">any</span><span class="p">([</span><span class="nb">len</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">cov_names</span><span class="p">)</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">]):</span>
|
||||
</span><span id="merge_obs-1774"><a href="#merge_obs-1774"><span class="linenos">1774</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'Not possible to merge data that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="merge_obs-1774"><a href="#merge_obs-1774"><span class="linenos">1774</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'Not possible to merge data that contains covobs!'</span><span class="p">)</span>
|
||||
</span><span id="merge_obs-1775"><a href="#merge_obs-1775"><span class="linenos">1775</span></a> <span class="n">new_dict</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
</span><span id="merge_obs-1776"><a href="#merge_obs-1776"><span class="linenos">1776</span></a> <span class="n">idl_dict</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
</span><span id="merge_obs-1777"><a href="#merge_obs-1777"><span class="linenos">1777</span></a> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">list_of_obs</span><span class="p">:</span>
|
||||
|
|
@ -6266,7 +6266,7 @@ list of the Obs object to be combined</li>
|
|||
</span><span id="cov_Obs-1822"><a href="#cov_Obs-1822"><span class="linenos">1822</span></a> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">)):</span>
|
||||
</span><span id="cov_Obs-1823"><a href="#cov_Obs-1823"><span class="linenos">1823</span></a> <span class="n">ol</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">covobs_to_obs</span><span class="p">(</span><span class="n">Covobs</span><span class="p">(</span><span class="n">means</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="n">cov</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">pos</span><span class="o">=</span><span class="n">i</span><span class="p">,</span> <span class="n">grad</span><span class="o">=</span><span class="n">grad</span><span class="p">)))</span>
|
||||
</span><span id="cov_Obs-1824"><a href="#cov_Obs-1824"><span class="linenos">1824</span></a> <span class="k">if</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">name</span><span class="p">]</span><span class="o">.</span><span class="n">N</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">means</span><span class="p">):</span>
|
||||
</span><span id="cov_Obs-1825"><a href="#cov_Obs-1825"><span class="linenos">1825</span></a> <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">'You have to provide </span><span class="si">%d</span><span class="s1"> mean values!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
|
||||
</span><span id="cov_Obs-1825"><a href="#cov_Obs-1825"><span class="linenos">1825</span></a> <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'You have to provide </span><span class="si">%d</span><span class="s1"> mean values!'</span> <span class="o">%</span> <span class="p">(</span><span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">N</span><span class="p">))</span>
|
||||
</span><span id="cov_Obs-1826"><a href="#cov_Obs-1826"><span class="linenos">1826</span></a> <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">ol</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
|
||||
</span><span id="cov_Obs-1827"><a href="#cov_Obs-1827"><span class="linenos">1827</span></a> <span class="k">return</span> <span class="n">ol</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
|
||||
</span><span id="cov_Obs-1828"><a href="#cov_Obs-1828"><span class="linenos">1828</span></a> <span class="k">return</span> <span class="n">ol</span>
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue