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Merge branch 'develop' into documentation

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fjosw 2022-01-31 17:30:50 +00:00
commit 3df59fc7bc
2 changed files with 99 additions and 30 deletions
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75
pyerrors/correlators.py
View file

@ -457,25 +457,16 @@ class Corr:
return (self + T_partner) / 2
def deriv(self, symmetric=True):
def deriv(self, variant="symmetric"):
"""Return the first derivative of the correlator with respect to x0.
Parameters
----------
symmetric : bool
decides whether symmetric of simple finite differences are used. Default: True
variant : str
decides which definition of the finite differences derivative is used.
Available choice: symmetric, forward, backward, improved, default: symmetric
"""
if not symmetric:
newcontent = []
for t in range(self.T - 1):
if (self.content[t] is None) or (self.content[t + 1] is None):
newcontent.append(None)
else:
newcontent.append(self.content[t + 1] - self.content[t])
if(all([x is None for x in newcontent])):
raise Exception("Derivative is undefined at all timeslices")
return Corr(newcontent, padding=[0, 1])
if symmetric:
if variant == "symmetric":
newcontent = []
for t in range(1, self.T - 1):
if (self.content[t - 1] is None) or (self.content[t + 1] is None):
@ -485,9 +476,49 @@ class Corr:
if(all([x is None for x in newcontent])):
raise Exception('Derivative is undefined at all timeslices')
return Corr(newcontent, padding=[1, 1])
elif variant == "forward":
newcontent = []
for t in range(self.T - 1):
if (self.content[t] is None) or (self.content[t + 1] is None):
newcontent.append(None)
else:
newcontent.append(self.content[t + 1] - self.content[t])
if(all([x is None for x in newcontent])):
raise Exception("Derivative is undefined at all timeslices")
return Corr(newcontent, padding=[0, 1])
elif variant == "backward":
newcontent = []
for t in range(1, self.T):
if (self.content[t - 1] is None) or (self.content[t] is None):
newcontent.append(None)
else:
newcontent.append(self.content[t] - self.content[t - 1])
if(all([x is None for x in newcontent])):
raise Exception("Derivative is undefined at all timeslices")
return Corr(newcontent, padding=[1, 0])
elif variant == "improved":
newcontent = []
for t in range(2, self.T - 2):
if (self.content[t - 2] is None) or (self.content[t - 1] is None) or (self.content[t + 1] is None) or (self.content[t + 2] is None):
newcontent.append(None)
else:
newcontent.append((1 / 12) * (self.content[t - 2] - 8 * self.content[t - 1] + 8 * self.content[t + 1] - self.content[t + 2]))
if(all([x is None for x in newcontent])):
raise Exception('Derivative is undefined at all timeslices')
return Corr(newcontent, padding=[2, 2])
else:
raise Exception("Unknown variant.")
def second_deriv(self):
"""Return the second derivative of the correlator with respect to x0."""
def second_deriv(self, variant="symmetric"):
"""Return the second derivative of the correlator with respect to x0.
Parameters
----------
variant : str
decides which definition of the finite differences derivative is used.
Available choice: symmetric, improved, default: symmetric
"""
if variant == "symmetric":
newcontent = []
for t in range(1, self.T - 1):
if (self.content[t - 1] is None) or (self.content[t + 1] is None):
@ -497,6 +528,18 @@ class Corr:
if(all([x is None for x in newcontent])):
raise Exception("Derivative is undefined at all timeslices")
return Corr(newcontent, padding=[1, 1])
elif variant == "improved":
newcontent = []
for t in range(2, self.T - 2):
if (self.content[t - 2] is None) or (self.content[t - 1] is None) or (self.content[t] is None) or (self.content[t + 1] is None) or (self.content[t + 2] is None):
newcontent.append(None)
else:
newcontent.append((1 / 12) * (-self.content[t + 2] + 16 * self.content[t + 1] - 30 * self.content[t] + 16 * self.content[t - 1] - self.content[t - 2]))
if(all([x is None for x in newcontent])):
raise Exception("Derivative is undefined at all timeslices")
return Corr(newcontent, padding=[2, 2])
else:
raise Exception("Unknown variant.")
def m_eff(self, variant='log', guess=1.0):
"""Returns the effective mass of the correlator as correlator object

36
tests/correlators_test.py
View file

@ -45,7 +45,7 @@ def test_modify_correlator():
exponent = np.random.normal(3, 5)
corr_content.append(pe.pseudo_Obs(2 + 10 ** exponent, 10 ** (exponent - 1), 't'))
corr = pe.correlators.Corr(corr_content)
corr = pe.Corr(corr_content)
with pytest.warns(RuntimeWarning):
corr.symmetric()
@ -53,14 +53,40 @@ def test_modify_correlator():
corr.anti_symmetric()
for pad in [0, 2]:
corr = pe.correlators.Corr(corr_content, padding=[pad, pad])
corr = pe.Corr(corr_content, padding=[pad, pad])
corr.roll(np.random.randint(100))
corr.deriv(symmetric=True)
corr.deriv(symmetric=False)
corr.deriv(variant="forward")
corr.deriv(variant="symmetric")
corr.deriv(variant="improved")
corr.deriv().deriv()
corr.second_deriv()
corr.second_deriv(variant="symmetric")
corr.second_deriv(variant="improved")
corr.second_deriv().second_deriv()
for i, e in enumerate(corr.content):
corr.content[i] = None
for func in [pe.Corr.deriv, pe.Corr.second_deriv]:
for variant in ["symmetric", "improved", "forward", "gibberish", None]:
with pytest.raises(Exception):
func(corr, variant=variant)
def test_deriv():
corr_content = []
for t in range(24):
exponent = 1.2
corr_content.append(pe.pseudo_Obs(2 + t ** exponent, 0.2, 't'))
corr = pe.Corr(corr_content)
forward = corr.deriv(variant="forward")
backward = corr.deriv(variant="backward")
sym = corr.deriv(variant="symmetric")
assert np.all([o == 0 for o in (0.5 * (forward + backward) - sym)[1:-1]])
assert np.all([o == 0 for o in (corr.deriv('forward').deriv('backward') - corr.second_deriv())[1:-1]])
assert np.all([o == 0 for o in (corr.deriv('backward').deriv('forward') - corr.second_deriv())[1:-1]])
def test_m_eff():
for padding in [0, 4]: