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fjosw 2022-02-15 16:36:59 +00:00
parent 7c25802806
commit 2e9c3e5d9a
2 changed files with 14 additions and 7 deletions
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docs/pyerrors/input/sfcf.html
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@ -77,7 +77,7 @@
<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">utils</span>
<span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
<span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="n">cfg_separator</span><span class="o">=</span><span class="s2">&quot;n&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Read sfcf c format from given folder structure.</span>
<span class="sd"> Parameters</span>
@ -111,6 +111,8 @@
<span class="sd"> append a &quot;c&quot; to the version (e.g. &quot;1.0c&quot;)</span>
<span class="sd"> if the append output option (-a) was specified,</span>
<span class="sd"> append an &quot;a&quot; to the version</span>
<span class="sd"> cfg_separator : str</span>
<span class="sd"> String that separates the ensemble identifier from the configuration number (default &#39;n&#39;).</span>
<span class="sd"> replica: list</span>
<span class="sd"> list of replica to be read, default is all</span>
<span class="sd"> files: list</span>
@ -248,7 +250,7 @@
<span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
<span class="k">try</span><span class="p">:</span>
<span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;n&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
<span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
@ -394,7 +396,7 @@
<span class="n">stop</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
<span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">start</span><span class="p">:</span><span class="n">stop</span><span class="p">]</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;n&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directory, problem with chunk around line &quot;</span><span class="p">,</span> <span class="n">gauge_line</span><span class="p">)</span>
@ -440,13 +442,14 @@
wf=0,
wf2=0,
version=&#39;1.0c&#39;,
cfg_separator=&#39;n&#39;,
**kwargs
)</span>:
</div>
<details>
<summary>View Source</summary>
<div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
<div class="pdoc-code codehilite"><pre><span></span><span class="k">def</span> <span class="nf">read_sfcf</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span><span class="p">,</span> <span class="n">name</span><span class="p">,</span> <span class="n">quarks</span><span class="o">=</span><span class="s1">&#39;.*&#39;</span><span class="p">,</span> <span class="n">corr_type</span><span class="o">=</span><span class="s1">&#39;bi&#39;</span><span class="p">,</span> <span class="n">noffset</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">wf2</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">version</span><span class="o">=</span><span class="s2">&quot;1.0c&quot;</span><span class="p">,</span> <span class="n">cfg_separator</span><span class="o">=</span><span class="s2">&quot;n&quot;</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Read sfcf c format from given folder structure.</span>
<span class="sd"> Parameters</span>
@ -480,6 +483,8 @@
<span class="sd"> append a &quot;c&quot; to the version (e.g. &quot;1.0c&quot;)</span>
<span class="sd"> if the append output option (-a) was specified,</span>
<span class="sd"> append an &quot;a&quot; to the version</span>
<span class="sd"> cfg_separator : str</span>
<span class="sd"> String that separates the ensemble identifier from the configuration number (default &#39;n&#39;).</span>
<span class="sd"> replica: list</span>
<span class="sd"> list of replica to be read, default is all</span>
<span class="sd"> files: list</span>
@ -617,7 +622,7 @@
<span class="k">for</span> <span class="n">cfg</span> <span class="ow">in</span> <span class="n">sub_ls</span><span class="p">:</span>
<span class="k">try</span><span class="p">:</span>
<span class="k">if</span> <span class="n">compact</span><span class="p">:</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;n&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">cfg</span><span class="p">[</span><span class="mi">3</span><span class="p">:]))</span>
<span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
@ -763,7 +768,7 @@
<span class="n">stop</span> <span class="o">=</span> <span class="n">start</span> <span class="o">+</span> <span class="n">data_starts</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
<span class="n">chunk</span> <span class="o">=</span> <span class="n">content</span><span class="p">[</span><span class="n">start</span><span class="p">:</span><span class="n">stop</span><span class="p">]</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">&quot;n&quot;</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="n">rep_idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">int</span><span class="p">(</span><span class="n">chunk</span><span class="p">[</span><span class="n">gauge_line</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">cfg_separator</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="k">except</span> <span class="ne">Exception</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">&quot;Couldn&#39;t parse idl from directory, problem with chunk around line &quot;</span><span class="p">,</span> <span class="n">gauge_line</span><span class="p">)</span>
@ -827,6 +832,8 @@ if the compact output option (-c) was specified,
append a "c" to the version (e.g. "1.0c")
if the append output option (-a) was specified,
append an "a" to the version</li>
<li><strong>cfg_separator</strong> (str):
String that separates the ensemble identifier from the configuration number (default 'n').</li>
<li><strong>replica</strong> (list):
list of replica to be read, default is all</li>
<li><strong>files</strong> (list):

2
docs/search.js
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