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Merge branch 'develop' into documentation

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fjosw 2025-10-30 15:27:07 +00:00
commit 252faf9683
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37
pyerrors/input/sfcf.py
View file

@ -10,7 +10,7 @@ import itertools
sep = "/"
def read_sfcf(path, prefix, name, quarks='.*', corr_type="bi", noffset=0, wf=0, wf2=0, version="1.0c", cfg_separator="n", silent=False, **kwargs):
def read_sfcf(path, prefix, name, quarks='.*', corr_type="bi", noffset=0, wf=0, wf2=0, version="1.0c", cfg_separator="n", cfg_func=None, silent=False, **kwargs):
"""Read sfcf files from given folder structure.
Parameters
@ -71,11 +71,11 @@ def read_sfcf(path, prefix, name, quarks='.*', corr_type="bi", noffset=0, wf=0,
"""
ret = read_sfcf_multi(path, prefix, [name], quarks_list=[quarks], corr_type_list=[corr_type],
noffset_list=[noffset], wf_list=[wf], wf2_list=[wf2], version=version,
cfg_separator=cfg_separator, silent=silent, **kwargs)
cfg_separator=cfg_separator, cfg_func=cfg_func, silent=silent, **kwargs)
return ret[name][quarks][str(noffset)][str(wf)][str(wf2)]
def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=['bi'], noffset_list=[0], wf_list=[0], wf2_list=[0], version="1.0c", cfg_separator="n", silent=False, keyed_out=False, **kwargs):
def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=['bi'], noffset_list=[0], wf_list=[0], wf2_list=[0], version="1.0c", cfg_separator="n", cfg_func=None, silent=False, keyed_out=False, **kwargs):
"""Read sfcf files from given folder structure.
Parameters
@ -245,6 +245,16 @@ def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=
for key in needed_keys:
internal_ret_dict[key] = []
def _default_idl_func(cfg_string, cfg_sep):
return int(cfg_string.split(cfg_sep)[-1])
if cfg_func is None:
print("Default idl function in use.")
cfg_func = _default_idl_func
cfg_func_args = [cfg_separator]
else:
cfg_func_args = kwargs.get("cfg_func_args", [])
if not appended:
for i, item in enumerate(ls):
rep_path = path + '/' + item
@ -268,7 +278,7 @@ def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=
for cfg in sub_ls:
try:
if compact:
rep_idl.append(int(cfg.split(cfg_separator)[-1]))
rep_idl.append(cfg_func(cfg, *cfg_func_args))
else:
rep_idl.append(int(cfg[3:]))
except Exception:
@ -351,7 +361,7 @@ def read_sfcf_multi(path, prefix, name_list, quarks_list=['.*'], corr_type_list=
for rep, file in enumerate(name_ls):
rep_idl = []
filename = path + '/' + file
T, rep_idl, rep_data = _read_append_rep(filename, pattern, intern[name]['b2b'], cfg_separator, im, intern[name]['single'])
T, rep_idl, rep_data = _read_append_rep(filename, pattern, intern[name]['b2b'], im, intern[name]['single'], cfg_func, cfg_func_args)
if rep == 0:
intern[name]['T'] = T
for t in range(intern[name]['T']):
@ -581,12 +591,7 @@ def _read_compact_rep(path, rep, sub_ls, intern, needed_keys, im):
return return_vals
def _read_chunk(chunk, gauge_line, cfg_sep, start_read, T, corr_line, b2b, pattern, im, single):
try:
idl = int(chunk[gauge_line].split(cfg_sep)[-1])
except Exception:
raise Exception("Couldn't parse idl from directory, problem with chunk around line ", gauge_line)
def _read_chunk_data(chunk, start_read, T, corr_line, b2b, pattern, im, single):
found_pat = ""
data = []
for li in chunk[corr_line + 1:corr_line + 6 + b2b]:
@ -595,10 +600,10 @@ def _read_chunk(chunk, gauge_line, cfg_sep, start_read, T, corr_line, b2b, patte
for t, line in enumerate(chunk[start_read:start_read + T]):
floats = list(map(float, line.split()))
data.append(floats[im + 1 - single])
return idl, data
return data
def _read_append_rep(filename, pattern, b2b, cfg_separator, im, single):
def _read_append_rep(filename, pattern, b2b, im, single, idl_func, cfg_func_args):
with open(filename, 'r') as fp:
content = fp.readlines()
data_starts = []
@ -634,7 +639,11 @@ def _read_append_rep(filename, pattern, b2b, cfg_separator, im, single):
start = data_starts[cnfg]
stop = start + data_starts[1]
chunk = content[start:stop]
idl, data = _read_chunk(chunk, gauge_line, cfg_separator, start_read, T, corr_line, b2b, pattern, im, single)
try:
idl = idl_func(chunk[gauge_line], *cfg_func_args)
except Exception:
raise Exception("Couldn't parse idl from file", filename, ", problem with chunk of lines", start + 1, "to", stop + 1)
data = _read_chunk_data(chunk, start_read, T, corr_line, b2b, pattern, im, single)
rep_idl.append(idl)
rep_data.append(data)

1150
tests/data/sfcf_test/data_apf/data_apf_r0.F_V0 Normal file
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970
tests/data/sfcf_test/data_apf/data_apf_r0.f_1 Normal file
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@ -0,0 +1,970 @@
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[correlator]
name f_1
quarks lquark lquark
offset 1
wf 0
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corr
+3.5119415254545038e+02 +3.0143306723935508e-15
[correlator]
name f_1
quarks lquark lquark
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corr
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name f_1
quarks lquark lquark
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corr
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name f_1
quarks lquark lquark
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name f_1
quarks lquark lquark
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name f_1
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name f_1
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name f_1
quarks lquark lquark
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name f_1
quarks lquark lquark
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400
tests/data/sfcf_test/data_apf/data_apf_r0.f_A Normal file
View file

@ -0,0 +1,400 @@
[run]
version 2.1
date 2022-01-19 11:04:03 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /data_a_r0_n1.lex
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_af_A
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 0
corr_t
1 +6.5471188727972304e+01 -6.1214214711790100e-12
2 +1.0447210336915187e+00 +8.9219487930753188e-13
3 -4.1025094911185178e+01 -4.8315634170546161e-14
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quarks lquark lquark
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name f_A
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name f_A
quarks lquark lquark
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[run]
version 2.1
date 2022-01-19 11:04:05 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /data_a_r0_n2.lex
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_af_A
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 0
corr_t
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2 +1.0447210336915187e+00 +8.9219487930753188e-13
3 -4.1025094911185178e+01 -4.8315634170546161e-14
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name f_A
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name f_A
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name f_A
quarks lquark lquark
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name f_A
quarks lquark lquark
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name f_A
quarks lquark lquark
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[run]
version 2.1
date 2022-01-19 11:04:07 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /data_a_r0_n3.lex
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_af_A
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 0
corr_t
1 +6.5471188727972304e+01 -6.1214214711790100e-12
2 +1.0447210336915187e+00 +8.9219487930753188e-13
3 -4.1025094911185178e+01 -4.8315634170546161e-14
[correlator]
name f_A
quarks lquark lquark
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name f_A
quarks lquark lquark
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name f_A
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name f_A
quarks lquark lquark
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[correlator]
name f_A
quarks lquark lquark
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wf 2
corr_t
1 +6.5529951269443117e+01 +7.9192560386479701e-14
2 +1.0516822345055870e+00 -1.2443038782429568e-14
3 -4.1025142768037739e+01 +5.9315333178954509e-17
[run]
version 2.1
date 2022-01-19 11:04:09 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /data_a_r0_n4.lex
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_af_A
[correlator]
name f_A
quarks lquark lquark
offset 0
wf 0
corr_t
1 +6.5471188727972304e+01 -6.1214214711790100e-12
2 +1.0447210336915187e+00 +8.9219487930753188e-13
3 -4.1025094911185178e+01 -4.8315634170546161e-14
[correlator]
name f_A
quarks lquark lquark
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1 +6.5551520722862705e+01 +2.0963356863957609e-13
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quarks lquark lquark
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quarks lquark lquark
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name f_A
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2 +1.0516822345055870e+00 -1.2443038782429568e-14
3 -4.1025142768037739e+01 +5.9315333178954509e-17
[run]
version 2.1
date 2022-01-19 11:04:11 +0100
host r04n07.palma.wwu
dir /scratch/tmp/j_kuhl19
user j_kuhl19
gauge_name /data_a_r0_n5.lex
gauge_md5 1ea28326e4090996111a320b8372811d
param_name sfcf_unity_test.in
param_md5 d881e90d41188a33b8b0f1bd0bc53ea5
param_hash 686af5e712ee2902180f5428af94c6e7
data_name ./output_10519905/data_af_A
[correlator]
name f_A
quarks lquark lquark
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wf 0
corr_t
1 +6.5471188727972304e+01 -6.1214214711790100e-12
2 +1.0447210336915187e+00 +8.9219487930753188e-13
3 -4.1025094911185178e+01 -4.8315634170546161e-14
[correlator]
name f_A
quarks lquark lquark
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corr_t
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name f_A
quarks lquark lquark
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corr_t
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2 +1.0516822345055969e+00 -2.2935262162529075e-15
3 -4.1025142768037746e+01 +3.7566377680004518e-16
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name f_A
quarks lquark lquark
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2 +1.0447210337411881e+00 -7.0387528705692678e-13
3 -4.1025094911167137e+01 +4.6509152745618223e-13
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name f_A
quarks lquark lquark
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1 +6.5551520722842213e+01 -8.1976426690345305e-13
2 +1.0542820240843382e+00 +2.1626370477046812e-13
3 -4.1024441815730086e+01 -2.4147931196409923e-14
[correlator]
name f_A
quarks lquark lquark
offset 1
wf 2
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1 +6.5529951269443117e+01 +7.9192560386479701e-14
2 +1.0516822345055870e+00 -1.2443038782429568e-14
3 -4.1025142768037739e+01 +5.9315333178954509e-17

77
tests/sfcf_in_test.py
View file

@ -24,10 +24,10 @@ def build_test_environment(path, env_type, cfgs, reps):
os.mkdir(path + "/data_c/data_c_r"+str(i))
for j in range(1, cfgs+1):
shutil.copy(path + "/data_c/data_c_r0/data_c_r0_n1", path + "/data_c/data_c_r"+str(i)+"/data_c_r"+str(i)+"_n"+str(j))
elif env_type == "a":
elif env_type in ["a", "apf"]:
for i in range(1, reps):
for corr in ["f_1", "f_A", "F_V0"]:
shutil.copy(path + "/data_a/data_a_r0." + corr, path + "/data_a/data_a_r" + str(i) + "." + corr)
shutil.copy(path + "/data_" + env_type + "/data_" + env_type + "_r0." + corr, path + "/data_" + env_type + "/data_" + env_type + "_r" + str(i) + "." + corr)
def test_o_bb(tmp_path):
@ -276,6 +276,28 @@ def test_a_bb(tmp_path):
assert f_1[0].value == 351.1941525454502
def test_a_bb_external_idl_func(tmp_path):
build_test_environment(str(tmp_path), "a", 5, 3)
def extract_idl(s: str) -> int:
return int(s.split("n")[-1])
f_1 = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_1", quarks="lquark lquark", wf=0, wf2=0, version="2.0a", corr_type="bb", cfg_func=extract_idl)
print(f_1)
assert len(f_1) == 1
assert list(f_1[0].shape.keys()) == ["data_a_|r0", "data_a_|r1", "data_a_|r2"]
assert f_1[0].value == 351.1941525454502
def test_a_bb_external_idl_func_postfix(tmp_path):
build_test_environment(str(tmp_path), "apf", 5, 3)
def extract_idl(s: str) -> int:
return int(s.split("n")[-1][:-5])
f_1 = sfin.read_sfcf(str(tmp_path) + "/data_apf", "data_apf", "f_1", quarks="lquark lquark", wf=0, wf2=0, version="2.0a", corr_type="bb", cfg_func=extract_idl)
print(f_1)
assert len(f_1) == 1
assert list(f_1[0].shape.keys()) == ["data_apf_|r0", "data_apf_|r1", "data_apf_|r2"]
assert f_1[0].value == 351.1941525454502
def test_a_bi(tmp_path):
build_test_environment(str(tmp_path), "a", 5, 3)
f_A = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_A", quarks="lquark lquark", wf=0, version="2.0a")
@ -287,6 +309,32 @@ def test_a_bi(tmp_path):
assert f_A[2].value == -41.025094911185185
def test_a_bi_external_idl_func(tmp_path):
build_test_environment(str(tmp_path), "a", 5, 3)
def extract_idl(s: str) -> int:
return int(s.split("n")[-1])
f_A = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_A", quarks="lquark lquark", wf=0, version="2.0a", cfg_func=extract_idl)
print(f_A)
assert len(f_A) == 3
assert list(f_A[0].shape.keys()) == ["data_a_|r0", "data_a_|r1", "data_a_|r2"]
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.025094911185185
def test_a_bi_external_idl_func_postfix(tmp_path):
build_test_environment(str(tmp_path), "apf", 5, 3)
def extract_idl(s: str) -> int:
return int(s.split("n")[-1][:-5])
f_A = sfin.read_sfcf(str(tmp_path) + "/data_apf", "data_apf", "f_A", quarks="lquark lquark", wf=0, version="2.0a", cfg_func=extract_idl)
print(f_A)
assert len(f_A) == 3
assert list(f_A[0].shape.keys()) == ["data_apf_|r0", "data_apf_|r1", "data_apf_|r2"]
assert f_A[0].value == 65.4711887279723
assert f_A[1].value == 1.0447210336915187
assert f_A[2].value == -41.025094911185185
def test_a_bi_files(tmp_path):
build_test_environment(str(tmp_path), "a", 5, 3)
f_A = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "f_A", quarks="lquark lquark", wf=0, version="2.0a", files=["data_a_r0.f_A", "data_a_r1.f_A", "data_a_r2.f_A"])
@ -316,6 +364,31 @@ def test_a_bib(tmp_path):
assert f_V0[2] == 683.6776090081005
def test_a_bib_external_idl_func(tmp_path):
build_test_environment(str(tmp_path), "a", 5, 3)
def extract_idl(s: str) -> int:
return int(s.split("n")[-1])
f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_a", "data_a", "F_V0", quarks="lquark lquark", wf=0, wf2=0, version="2.0a", corr_type="bib", cfg_func=extract_idl)
print(f_V0)
assert len(f_V0) == 3
assert list(f_V0[0].shape.keys()) == ["data_a_|r0", "data_a_|r1", "data_a_|r2"]
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005
def test_a_bib_external_idl_func_postfix(tmp_path):
build_test_environment(str(tmp_path), "apf", 5, 3)
def extract_idl(s: str) -> int:
return int(s.split("n")[-1][:-5])
f_V0 = sfin.read_sfcf(str(tmp_path) + "/data_apf", "data_apf", "F_V0", quarks="lquark lquark", wf=0, wf2=0, version="2.0a", corr_type="bib", cfg_func=extract_idl)
print(f_V0)
assert len(f_V0) == 3
assert list(f_V0[0].shape.keys()) == ["data_apf_|r0", "data_apf_|r1", "data_apf_|r2"]
assert f_V0[0] == 683.6776090085115
assert f_V0[1] == 661.3188585582334
assert f_V0[2] == 683.6776090081005
def test_simple_multi_a(tmp_path):
build_test_environment(str(tmp_path), "a", 5, 3)
corrs = sfin.read_sfcf_multi(str(tmp_path) + "/data_a", "data_a", ["F_V0"], quarks_list=["lquark lquark"], wf1_list=[0], wf2_list=[0], version="2.0a", corr_type_list=["bib"])