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Documentation updated
This commit is contained in:
fjosw
parent
7a7775d83d
commit
2313ce5027
2 changed files with 34 additions and 43 deletions
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@ -116,6 +116,9 @@
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<li>
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<a class="variable" href="#Obs.e_content">e_content</a>
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</li>
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<li>
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<a class="variable" href="#Obs.covobs">covobs</a>
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</li>
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<li>
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<a class="function" href="#Obs.gamma_method">gamma_method</a>
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</li>
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@ -209,9 +212,6 @@
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<li>
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<a class="variable" href="#Obs.S">S</a>
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</li>
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<li>
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<a class="variable" href="#Obs.covobs">covobs</a>
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</li>
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<li>
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<a class="variable" href="#Obs.e_ddvalue">e_ddvalue</a>
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</li>
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@ -362,7 +362,7 @@
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<span class="s1">'ddvalue'</span><span class="p">,</span> <span class="s1">'reweighted'</span><span class="p">,</span> <span class="s1">'S'</span><span class="p">,</span> <span class="s1">'tau_exp'</span><span class="p">,</span> <span class="s1">'N_sigma'</span><span class="p">,</span>
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<span class="s1">'e_dvalue'</span><span class="p">,</span> <span class="s1">'e_ddvalue'</span><span class="p">,</span> <span class="s1">'e_tauint'</span><span class="p">,</span> <span class="s1">'e_dtauint'</span><span class="p">,</span>
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<span class="s1">'e_windowsize'</span><span class="p">,</span> <span class="s1">'e_rho'</span><span class="p">,</span> <span class="s1">'e_drho'</span><span class="p">,</span> <span class="s1">'e_n_tauint'</span><span class="p">,</span> <span class="s1">'e_n_dtauint'</span><span class="p">,</span>
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<span class="s1">'idl'</span><span class="p">,</span> <span class="s1">'is_merged'</span><span class="p">,</span> <span class="s1">'tag'</span><span class="p">,</span> <span class="s1">'covobs'</span><span class="p">,</span> <span class="s1">'__dict__'</span><span class="p">]</span>
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<span class="s1">'idl'</span><span class="p">,</span> <span class="s1">'is_merged'</span><span class="p">,</span> <span class="s1">'tag'</span><span class="p">,</span> <span class="s1">'_covobs'</span><span class="p">,</span> <span class="s1">'__dict__'</span><span class="p">]</span>
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<span class="n">S_global</span> <span class="o">=</span> <span class="mf">2.0</span>
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<span class="n">S_dict</span> <span class="o">=</span> <span class="p">{}</span>
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@ -372,7 +372,7 @@
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<span class="n">N_sigma_dict</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="n">filter_eps</span> <span class="o">=</span> <span class="mf">1e-10</span>
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<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">covobs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<span class="sd">""" Initialize Obs object.</span>
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<span class="sd"> Parameters</span>
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@ -410,10 +410,7 @@
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<span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">if</span> <span class="n">covobs</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">else</span><span class="p">:</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="n">covobs</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
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@ -496,6 +493,10 @@
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<span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e_name</span><span class="p">)</span>
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<span class="k">return</span> <span class="n">res</span>
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<span class="nd">@property</span>
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<span class="k">def</span> <span class="nf">covobs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
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<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span>
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<span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<span class="sd">"""Estimate the error and related properties of the Obs.</span>
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@ -1511,9 +1512,7 @@
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="n">new_names_obs</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="n">new_means</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
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<span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">new_val</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">is_merged</span>
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<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">reweighted</span>
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@ -1880,10 +1879,8 @@
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<span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[])</span>
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<span class="n">o</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">co</span><span class="o">.</span><span class="n">value</span>
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<span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
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<span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
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<span class="n">o</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
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<span class="n">o</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
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<span class="n">o</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
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<span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
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<span class="k">return</span> <span class="n">o</span>
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<span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
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@ -1946,7 +1943,7 @@
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<span class="s1">'ddvalue'</span><span class="p">,</span> <span class="s1">'reweighted'</span><span class="p">,</span> <span class="s1">'S'</span><span class="p">,</span> <span class="s1">'tau_exp'</span><span class="p">,</span> <span class="s1">'N_sigma'</span><span class="p">,</span>
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<span class="s1">'e_dvalue'</span><span class="p">,</span> <span class="s1">'e_ddvalue'</span><span class="p">,</span> <span class="s1">'e_tauint'</span><span class="p">,</span> <span class="s1">'e_dtauint'</span><span class="p">,</span>
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<span class="s1">'e_windowsize'</span><span class="p">,</span> <span class="s1">'e_rho'</span><span class="p">,</span> <span class="s1">'e_drho'</span><span class="p">,</span> <span class="s1">'e_n_tauint'</span><span class="p">,</span> <span class="s1">'e_n_dtauint'</span><span class="p">,</span>
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<span class="s1">'idl'</span><span class="p">,</span> <span class="s1">'is_merged'</span><span class="p">,</span> <span class="s1">'tag'</span><span class="p">,</span> <span class="s1">'covobs'</span><span class="p">,</span> <span class="s1">'__dict__'</span><span class="p">]</span>
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<span class="s1">'idl'</span><span class="p">,</span> <span class="s1">'is_merged'</span><span class="p">,</span> <span class="s1">'tag'</span><span class="p">,</span> <span class="s1">'_covobs'</span><span class="p">,</span> <span class="s1">'__dict__'</span><span class="p">]</span>
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<span class="n">S_global</span> <span class="o">=</span> <span class="mf">2.0</span>
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<span class="n">S_dict</span> <span class="o">=</span> <span class="p">{}</span>
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@ -1956,7 +1953,7 @@
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<span class="n">N_sigma_dict</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="n">filter_eps</span> <span class="o">=</span> <span class="mf">1e-10</span>
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<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">covobs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<span class="sd">""" Initialize Obs object.</span>
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<span class="sd"> Parameters</span>
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@ -1994,10 +1991,7 @@
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<span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">if</span> <span class="n">covobs</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">else</span><span class="p">:</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="n">covobs</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
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@ -2080,6 +2074,10 @@
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<span class="n">res</span><span class="p">[</span><span class="n">e_name</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">e_name</span><span class="p">)</span>
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<span class="k">return</span> <span class="n">res</span>
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<span class="nd">@property</span>
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<span class="k">def</span> <span class="nf">covobs</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
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<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span>
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<span class="k">def</span> <span class="nf">gamma_method</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<span class="sd">"""Estimate the error and related properties of the Obs.</span>
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@ -2744,12 +2742,12 @@ this overwrites the standard value for that ensemble.</li>
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<div class="attr function"><a class="headerlink" href="#Obs.__init__">#  </a>
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<span class="name">Obs</span><span class="signature">(samples, names, idl=None, means=None, covobs=None, **kwargs)</span>
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<span class="name">Obs</span><span class="signature">(samples, names, idl=None, means=None, **kwargs)</span>
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</div>
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<details>
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<summary>View Source</summary>
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<div class="codehilite"><pre><span></span> <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">covobs</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<div class="codehilite"><pre><span></span> <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
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<span class="sd">""" Initialize Obs object.</span>
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<span class="sd"> Parameters</span>
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@ -2787,10 +2785,7 @@ this overwrites the standard value for that ensemble.</li>
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<span class="bp">self</span><span class="o">.</span><span class="n">shape</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">r_values</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">deltas</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">if</span> <span class="n">covobs</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="k">else</span><span class="p">:</span>
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<span class="bp">self</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="n">covobs</span>
|
||||
<span class="bp">self</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
|
||||
<span class="bp">self</span><span class="o">.</span><span class="n">idl</span> <span class="o">=</span> <span class="p">{}</span>
|
||||
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">samples</span><span class="p">):</span>
|
||||
|
|
@ -3054,6 +3049,15 @@ already subtracted from the samples</li>
|
|||
|
||||
|
||||
|
||||
</div>
|
||||
<div id="Obs.covobs" class="classattr">
|
||||
<div class="attr variable"><a class="headerlink" href="#Obs.covobs">#  </a>
|
||||
|
||||
<span class="name">covobs</span>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
<div id="Obs.gamma_method" class="classattr">
|
||||
<div class="attr function"><a class="headerlink" href="#Obs.gamma_method">#  </a>
|
||||
|
|
@ -4097,15 +4101,6 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
|
|||
|
||||
|
||||
|
||||
</div>
|
||||
<div id="Obs.covobs" class="classattr">
|
||||
<div class="attr variable"><a class="headerlink" href="#Obs.covobs">#  </a>
|
||||
|
||||
<span class="name">covobs</span>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
<div id="Obs.e_ddvalue" class="classattr">
|
||||
<div class="attr variable"><a class="headerlink" href="#Obs.e_ddvalue">#  </a>
|
||||
|
|
@ -4632,9 +4627,7 @@ should agree with samples from a full jackknife analysis up to O(1/N).</li>
|
|||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">new_samples</span><span class="p">,</span> <span class="n">new_names_obs</span><span class="p">,</span> <span class="n">means</span><span class="o">=</span><span class="n">new_means</span><span class="p">,</span> <span class="n">idl</span><span class="o">=</span><span class="n">new_idl</span><span class="p">)</span>
|
||||
<span class="k">for</span> <span class="n">name</span> <span class="ow">in</span> <span class="n">new_covobs</span><span class="p">:</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">name</span><span class="p">)</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_covobs</span> <span class="o">=</span> <span class="n">new_covobs</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">new_val</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">is_merged</span>
|
||||
<span class="n">final_result</span><span class="p">[</span><span class="n">i_val</span><span class="p">]</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">reweighted</span>
|
||||
|
|
@ -5180,10 +5173,8 @@ list of the Obs object to be combined</li>
|
|||
<span class="n">o</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">([],</span> <span class="p">[])</span>
|
||||
<span class="n">o</span><span class="o">.</span><span class="n">_value</span> <span class="o">=</span> <span class="n">co</span><span class="o">.</span><span class="n">value</span>
|
||||
<span class="n">o</span><span class="o">.</span><span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">)</span>
|
||||
<span class="n">o</span><span class="o">.</span><span class="n">covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
|
||||
<span class="n">o</span><span class="o">.</span><span class="n">_covobs</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="n">co</span>
|
||||
<span class="n">o</span><span class="o">.</span><span class="n">_dvalue</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">co</span><span class="o">.</span><span class="n">errsq</span><span class="p">())</span>
|
||||
<span class="n">o</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="mi">1</span>
|
||||
<span class="n">o</span><span class="o">.</span><span class="n">idl</span><span class="p">[</span><span class="n">co</span><span class="o">.</span><span class="n">name</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
<span class="k">return</span> <span class="n">o</span>
|
||||
|
||||
<span class="n">ol</span> <span class="o">=</span> <span class="p">[]</span>
|
||||
|
|
|
|||
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Reference in a new issue