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fjosw 2022-01-21 14:06:43 +00:00
parent f46b522d97
commit 04e672af9f
2 changed files with 48 additions and 14 deletions
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docs/pyerrors/obs.html
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@ -784,8 +784,8 @@
<span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
<span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
@ -810,13 +810,20 @@
<span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
<span class="k">if</span> <span class="n">save</span><span class="p">:</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
<span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.&quot;&quot;&quot;</span>
<span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> save : str</span>
<span class="sd"> saves the figure to a file named &#39;save&#39; if.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
<span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
<span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
@ -833,6 +840,8 @@
<span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
<span class="k">if</span> <span class="n">save</span><span class="p">:</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
<span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
@ -2374,8 +2383,8 @@
<span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
<span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
@ -2400,13 +2409,20 @@
<span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
<span class="k">if</span> <span class="n">save</span><span class="p">:</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
<span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.&quot;&quot;&quot;</span>
<span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> save : str</span>
<span class="sd"> saves the figure to a file named &#39;save&#39; if.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
<span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
<span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
@ -2423,6 +2439,8 @@
<span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
<span class="k">if</span> <span class="n">save</span><span class="p">:</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
<span class="k">def</span> <span class="nf">plot_rep_dist</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot replica distribution for each ensemble with more than one replicum.&quot;&quot;&quot;</span>
@ -3456,8 +3474,8 @@ Absolute tolerance (for details see numpy documentation).</li>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$W$&#39;</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\tau_\mathrm</span><span class="si">{int}</span><span class="s1">$&#39;</span><span class="p">)</span>
<span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_n_tauint</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
@ -3482,7 +3500,7 @@ Absolute tolerance (for details see numpy documentation).</li>
<span class="n">plt</span><span class="o">.</span><span class="n">ylim</span><span class="p">(</span><span class="n">bottom</span><span class="o">=</span><span class="mf">0.0</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
<span class="k">if</span> <span class="n">save</span><span class="p">:</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span><span class="p">)</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
</pre></div>
</details>
@ -3504,16 +3522,23 @@ saves the figure to a file named 'save' if.</li>
<span class="def">def</span>
<span class="name">plot_rho</span><span class="signature">(self)</span>:
<span class="name">plot_rho</span><span class="signature">(self, save=None)</span>:
</div>
<details>
<summary>View Source</summary>
<div class="codehilite"><pre><span></span> <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.&quot;&quot;&quot;</span>
<div class="codehilite"><pre><span></span> <span class="k">def</span> <span class="nf">plot_rho</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">save</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Plot normalized autocorrelation function time for each ensemble.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> save : str</span>
<span class="sd"> saves the figure to a file named &#39;save&#39; if.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">hasattr</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;e_dvalue&#39;</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s1">&#39;Run the gamma method first.&#39;</span><span class="p">)</span>
<span class="k">for</span> <span class="n">e</span><span class="p">,</span> <span class="n">e_name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">mc_names</span><span class="p">):</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">figure</span><span class="p">()</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;W&#39;</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;rho&#39;</span><span class="p">)</span>
<span class="n">length</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">e_drho</span><span class="p">[</span><span class="n">e_name</span><span class="p">]))</span>
@ -3530,11 +3555,20 @@ saves the figure to a file named 'save' if.</li>
<span class="n">plt</span><span class="o">.</span><span class="n">plot</span><span class="p">([</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">],</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">],</span> <span class="s1">&#39;k--&#39;</span><span class="p">,</span> <span class="n">lw</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">xlim</span><span class="p">(</span><span class="o">-</span><span class="mf">0.5</span><span class="p">,</span> <span class="n">xmax</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">draw</span><span class="p">()</span>
<span class="k">if</span> <span class="n">save</span><span class="p">:</span>
<span class="n">fig</span><span class="o">.</span><span class="n">savefig</span><span class="p">(</span><span class="n">save</span> <span class="o">+</span> <span class="s2">&quot;_&quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
</pre></div>
</details>
<div class="docstring"><p>Plot normalized autocorrelation function time for each ensemble.</p>
<h6 id="parameters">Parameters</h6>
<ul>
<li><strong>save</strong> (str):
saves the figure to a file named 'save' if.</li>
</ul>
</div>

2
docs/search.js
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