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Documentation updated
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fjosw
parent
46db6d41e7
commit
03b4840115
1 changed files with 46 additions and 20 deletions
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@ -241,12 +241,27 @@
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<span class="n">d</span><span class="p">[</span><span class="s1">'cdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'cdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
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<span class="k">return</span> <span class="n">d</span>
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<span class="k">return</span> <span class="n">d</span>
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<span class="k">def</span> <span class="nf">_nan_Obs_like</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
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<span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
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<span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
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<span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
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<span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
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<span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">))</span>
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<span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
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<span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
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<span class="n">my_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
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<span class="n">my_obs</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">reweighted</span>
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<span class="n">my_obs</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">is_merged</span>
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<span class="k">return</span> <span class="n">my_obs</span>
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<span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
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<span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
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<span class="n">front_padding</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
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<span class="n">first_not_none</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
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<span class="n">back_padding_start</span> <span class="o">=</span> <span class="n">front_padding</span> <span class="o">+</span> <span class="nb">next</span><span class="p">((</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">front_padding</span><span class="p">:])</span> <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">)),</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">T</span><span class="p">)</span>
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<span class="n">dummy_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
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<span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">front_padding</span><span class="p">:</span><span class="n">back_padding_start</span><span class="p">]))</span>
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<span class="n">dummy_array</span><span class="p">[:]</span> <span class="o">=</span> <span class="n">_nan_Obs_like</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">first_not_none</span><span class="p">]</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">])</span>
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<span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">dummy_array</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
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<span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">))</span>
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<span class="n">dat</span><span class="p">[</span><span class="s1">'type'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'Corr'</span>
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<span class="n">dat</span><span class="p">[</span><span class="s1">'type'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'Corr'</span>
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<span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">front_padding</span><span class="p">)</span> <span class="o">+</span> <span class="s1">'|'</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">back_padding_start</span><span class="p">)</span> <span class="o">+</span> <span class="s1">'|'</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
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<span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
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<span class="k">if</span> <span class="s1">'tag'</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
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<span class="k">if</span> <span class="s1">'tag'</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
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<span class="n">dat</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
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<span class="n">dat</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
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<span class="k">else</span><span class="p">:</span>
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<span class="k">else</span><span class="p">:</span>
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@ -258,7 +273,7 @@
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<span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'program'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'pyerrors </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'program'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'pyerrors </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'version'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'0.1'</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'version'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'0.2'</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'who'</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'who'</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z'</span><span class="p">)</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z'</span><span class="p">)</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'host'</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">', '</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
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<span class="n">d</span><span class="p">[</span><span class="s1">'host'</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">', '</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
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@ -296,6 +311,7 @@
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<span class="k">return</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
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<span class="k">return</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
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<span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
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<span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
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<span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">'nan'</span><span class="p">,</span> <span class="s1">'NaN'</span><span class="p">)</span>
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<span class="k">return</span> <span class="n">jsonstring</span>
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<span class="k">return</span> <span class="n">jsonstring</span>
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@ -460,16 +476,13 @@
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<span class="k">def</span> <span class="nf">get_Corr_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
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<span class="k">def</span> <span class="nf">get_Corr_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
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<span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'tag'</span><span class="p">)</span>
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<span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'tag'</span><span class="p">)</span>
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<span class="n">corr_meta_data</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'|'</span><span class="p">)</span>
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<span class="n">corr_tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
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<span class="n">padding_front</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
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<span class="n">padding_back</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
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<span class="n">corr_tag</span> <span class="o">=</span> <span class="n">corr_meta_data</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
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<span class="n">tmp_o</span> <span class="o">=</span> <span class="n">o</span>
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<span class="n">tmp_o</span> <span class="o">=</span> <span class="n">o</span>
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<span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
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<span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
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<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
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<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
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<span class="k">del</span> <span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span>
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<span class="k">del</span> <span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span>
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<span class="n">dat</span> <span class="o">=</span> <span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">)</span>
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<span class="n">dat</span> <span class="o">=</span> <span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">)</span>
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<span class="n">my_corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">dat</span><span class="p">),</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="n">padding_front</span><span class="p">,</span> <span class="n">padding_back</span><span class="p">])</span>
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<span class="n">my_corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">([</span><span class="kc">None</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="k">else</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">dat</span><span class="p">)])</span>
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<span class="k">if</span> <span class="n">corr_tag</span> <span class="o">!=</span> <span class="s1">'None'</span><span class="p">:</span>
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<span class="k">if</span> <span class="n">corr_tag</span> <span class="o">!=</span> <span class="s1">'None'</span><span class="p">:</span>
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<span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">corr_tag</span>
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<span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">corr_tag</span>
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<span class="k">return</span> <span class="n">my_corr</span>
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<span class="k">return</span> <span class="n">my_corr</span>
|
||||||
|
|
@ -718,12 +731,27 @@
|
||||||
<span class="n">d</span><span class="p">[</span><span class="s1">'cdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
|
<span class="n">d</span><span class="p">[</span><span class="s1">'cdata'</span><span class="p">]</span> <span class="o">=</span> <span class="n">cdata</span>
|
||||||
<span class="k">return</span> <span class="n">d</span>
|
<span class="k">return</span> <span class="n">d</span>
|
||||||
|
|
||||||
|
<span class="k">def</span> <span class="nf">_nan_Obs_like</span><span class="p">(</span><span class="n">obs</span><span class="p">):</span>
|
||||||
|
<span class="n">samples</span> <span class="o">=</span> <span class="p">[]</span>
|
||||||
|
<span class="n">names</span> <span class="o">=</span> <span class="p">[]</span>
|
||||||
|
<span class="n">idl</span> <span class="o">=</span> <span class="p">[]</span>
|
||||||
|
<span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">obs</span><span class="o">.</span><span class="n">idl</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
|
||||||
|
<span class="n">samples</span><span class="o">.</span><span class="n">append</span><span class="p">([</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">]</span> <span class="o">*</span> <span class="nb">len</span><span class="p">(</span><span class="n">value</span><span class="p">))</span>
|
||||||
|
<span class="n">names</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
|
||||||
|
<span class="n">idl</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
|
||||||
|
<span class="n">my_obs</span> <span class="o">=</span> <span class="n">Obs</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">names</span><span class="p">,</span> <span class="n">idl</span><span class="p">)</span>
|
||||||
|
<span class="n">my_obs</span><span class="o">.</span><span class="n">reweighted</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">reweighted</span>
|
||||||
|
<span class="n">my_obs</span><span class="o">.</span><span class="n">is_merged</span> <span class="o">=</span> <span class="n">obs</span><span class="o">.</span><span class="n">is_merged</span>
|
||||||
|
<span class="k">return</span> <span class="n">my_obs</span>
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
|
<span class="k">def</span> <span class="nf">write_Corr_to_dict</span><span class="p">(</span><span class="n">my_corr</span><span class="p">):</span>
|
||||||
<span class="n">front_padding</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
|
<span class="n">first_not_none</span> <span class="o">=</span> <span class="nb">next</span><span class="p">(</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">)</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">))</span>
|
||||||
<span class="n">back_padding_start</span> <span class="o">=</span> <span class="n">front_padding</span> <span class="o">+</span> <span class="nb">next</span><span class="p">((</span><span class="n">i</span> <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">front_padding</span><span class="p">:])</span> <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">j</span><span class="p">)),</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">T</span><span class="p">)</span>
|
<span class="n">dummy_array</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">empty</span><span class="p">((</span><span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">,</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">N</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
|
||||||
<span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">front_padding</span><span class="p">:</span><span class="n">back_padding_start</span><span class="p">]))</span>
|
<span class="n">dummy_array</span><span class="p">[:]</span> <span class="o">=</span> <span class="n">_nan_Obs_like</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">[</span><span class="n">first_not_none</span><span class="p">]</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">])</span>
|
||||||
|
<span class="n">content</span> <span class="o">=</span> <span class="p">[</span><span class="n">o</span> <span class="k">if</span> <span class="n">o</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="k">else</span> <span class="n">dummy_array</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="n">my_corr</span><span class="o">.</span><span class="n">content</span><span class="p">]</span>
|
||||||
|
<span class="n">dat</span> <span class="o">=</span> <span class="n">write_Array_to_dict</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">content</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">))</span>
|
||||||
<span class="n">dat</span><span class="p">[</span><span class="s1">'type'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'Corr'</span>
|
<span class="n">dat</span><span class="p">[</span><span class="s1">'type'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'Corr'</span>
|
||||||
<span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">front_padding</span><span class="p">)</span> <span class="o">+</span> <span class="s1">'|'</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">T</span> <span class="o">-</span> <span class="n">back_padding_start</span><span class="p">)</span> <span class="o">+</span> <span class="s1">'|'</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
|
<span class="n">corr_meta_data</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span><span class="p">)</span>
|
||||||
<span class="k">if</span> <span class="s1">'tag'</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
|
<span class="k">if</span> <span class="s1">'tag'</span> <span class="ow">in</span> <span class="n">dat</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
|
||||||
<span class="n">dat</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
|
<span class="n">dat</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">)</span>
|
||||||
<span class="k">else</span><span class="p">:</span>
|
<span class="k">else</span><span class="p">:</span>
|
||||||
|
|
@ -735,7 +763,7 @@
|
||||||
|
|
||||||
<span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
|
<span class="n">d</span> <span class="o">=</span> <span class="p">{}</span>
|
||||||
<span class="n">d</span><span class="p">[</span><span class="s1">'program'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'pyerrors </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
|
<span class="n">d</span><span class="p">[</span><span class="s1">'program'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'pyerrors </span><span class="si">%s</span><span class="s1">'</span> <span class="o">%</span> <span class="p">(</span><span class="n">pyerrorsversion</span><span class="o">.</span><span class="n">__version__</span><span class="p">)</span>
|
||||||
<span class="n">d</span><span class="p">[</span><span class="s1">'version'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'0.1'</span>
|
<span class="n">d</span><span class="p">[</span><span class="s1">'version'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'0.2'</span>
|
||||||
<span class="n">d</span><span class="p">[</span><span class="s1">'who'</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
|
<span class="n">d</span><span class="p">[</span><span class="s1">'who'</span><span class="p">]</span> <span class="o">=</span> <span class="n">getpass</span><span class="o">.</span><span class="n">getuser</span><span class="p">()</span>
|
||||||
<span class="n">d</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z'</span><span class="p">)</span>
|
<span class="n">d</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span><span class="o">.</span><span class="n">astimezone</span><span class="p">()</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S %z'</span><span class="p">)</span>
|
||||||
<span class="n">d</span><span class="p">[</span><span class="s1">'host'</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">', '</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
|
<span class="n">d</span><span class="p">[</span><span class="s1">'host'</span><span class="p">]</span> <span class="o">=</span> <span class="n">socket</span><span class="o">.</span><span class="n">gethostname</span><span class="p">()</span> <span class="o">+</span> <span class="s1">', '</span> <span class="o">+</span> <span class="n">platform</span><span class="o">.</span><span class="n">platform</span><span class="p">()</span>
|
||||||
|
|
@ -773,6 +801,7 @@
|
||||||
<span class="k">return</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
|
<span class="k">return</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">split</span><span class="p">)</span>
|
||||||
|
|
||||||
<span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
|
<span class="n">jsonstring</span> <span class="o">=</span> <span class="n">remove_quotationmarks</span><span class="p">(</span><span class="n">jsonstring</span><span class="p">)</span>
|
||||||
|
<span class="n">jsonstring</span> <span class="o">=</span> <span class="n">jsonstring</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">'nan'</span><span class="p">,</span> <span class="s1">'NaN'</span><span class="p">)</span>
|
||||||
<span class="k">return</span> <span class="n">jsonstring</span>
|
<span class="k">return</span> <span class="n">jsonstring</span>
|
||||||
</pre></div>
|
</pre></div>
|
||||||
|
|
||||||
|
|
@ -1004,16 +1033,13 @@ If True, the output is a gzipped json. If False, the output is a json file.</li>
|
||||||
|
|
||||||
<span class="k">def</span> <span class="nf">get_Corr_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
|
<span class="k">def</span> <span class="nf">get_Corr_from_dict</span><span class="p">(</span><span class="n">o</span><span class="p">):</span>
|
||||||
<span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'tag'</span><span class="p">)</span>
|
<span class="n">taglist</span> <span class="o">=</span> <span class="n">o</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'tag'</span><span class="p">)</span>
|
||||||
<span class="n">corr_meta_data</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'|'</span><span class="p">)</span>
|
<span class="n">corr_tag</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
|
||||||
<span class="n">padding_front</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
|
|
||||||
<span class="n">padding_back</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">corr_meta_data</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span>
|
|
||||||
<span class="n">corr_tag</span> <span class="o">=</span> <span class="n">corr_meta_data</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span>
|
|
||||||
<span class="n">tmp_o</span> <span class="o">=</span> <span class="n">o</span>
|
<span class="n">tmp_o</span> <span class="o">=</span> <span class="n">o</span>
|
||||||
<span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
|
<span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span> <span class="o">=</span> <span class="n">taglist</span><span class="p">[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
|
||||||
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
|
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
|
||||||
<span class="k">del</span> <span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span>
|
<span class="k">del</span> <span class="n">tmp_o</span><span class="p">[</span><span class="s1">'tag'</span><span class="p">]</span>
|
||||||
<span class="n">dat</span> <span class="o">=</span> <span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">)</span>
|
<span class="n">dat</span> <span class="o">=</span> <span class="n">get_Array_from_dict</span><span class="p">(</span><span class="n">tmp_o</span><span class="p">)</span>
|
||||||
<span class="n">my_corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">dat</span><span class="p">),</span> <span class="n">padding</span><span class="o">=</span><span class="p">[</span><span class="n">padding_front</span><span class="p">,</span> <span class="n">padding_back</span><span class="p">])</span>
|
<span class="n">my_corr</span> <span class="o">=</span> <span class="n">Corr</span><span class="p">([</span><span class="kc">None</span> <span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">o</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> <span class="k">else</span> <span class="n">o</span> <span class="k">for</span> <span class="n">o</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">dat</span><span class="p">)])</span>
|
||||||
<span class="k">if</span> <span class="n">corr_tag</span> <span class="o">!=</span> <span class="s1">'None'</span><span class="p">:</span>
|
<span class="k">if</span> <span class="n">corr_tag</span> <span class="o">!=</span> <span class="s1">'None'</span><span class="p">:</span>
|
||||||
<span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">corr_tag</span>
|
<span class="n">my_corr</span><span class="o">.</span><span class="n">tag</span> <span class="o">=</span> <span class="n">corr_tag</span>
|
||||||
<span class="k">return</span> <span class="n">my_corr</span>
|
<span class="k">return</span> <span class="n">my_corr</span>
|
||||||
|
|
|
||||||
Loading…
Add table
Reference in a new issue