from pyerrors.input import json as pj import os import datalad.api as dl import sqlite3 from .input.sfcf import get_specs from .input.sfcf import read_param def write_measurement(path, ensemble, measurement, uuid, code, parameter_file): """ Write a measurement to the backlog. If the file for the measurement already exists, update the measurement. Parameters ---------- path: str The path to the backlogger folder. ensemble: str The ensemble of the measurement. measurement: dict Measurements to be captured in the backlogging system. uuid: str The uuid of the project. """ parameters = read_param(path, uuid, parameter_file) print(parameters) dl.unlock(path + '/backlogger.db', dataset=path) conn = sqlite3.connect(path + '/backlogger.db') c = conn.cursor() files = [] for corr in measurement.keys(): file = path + "/archive/" + ensemble + "/" + corr + '/' + uuid + '.json.gz' files.append(file) known_meas = None if not os.path.exists(path + "/archive/" + ensemble + "/" + corr): os.makedirs(path + "/archive/" + ensemble + "/" + corr) else: if os.path.exists(file): dl.unlock(file, dataset=path) known_meas = pj.load_json_dict(file) for subkey in measurement[corr].keys(): meas_path = file + "::" + subkey if known_meas is not None: known_meas[subkey] = measurement[corr][subkey] # this should be only set if something changed. else: known_meas = measurement[corr] if c.execute("SELECT * FROM backlogs WHERE path = ?", (meas_path,)).fetchone() is not None: c.execute("UPDATE backlogs SET updated_at = datetime('now') WHERE path = ?", (meas_path, )) else: c.execute("INSERT INTO backlogs (name, ensemble, code, path, project, parameters, parameter_file, created_at, updated_at) VALUES (?, ?, ?, ?, ?, ?, ?, datetime('now'), datetime('now'))", (corr, ensemble, code, meas_path, uuid, get_specs(corr + "/" + subkey, parameters), parameter_file)) conn.commit() pj.dump_dict_to_json(measurement[corr], file) files.append(path + '/backlogger.db') conn.close() dl.save(files, message="Add measurements to database", dataset=path) def get_record(path, meas_path): file = meas_path.split("::")[0] sub_key = meas_path.split("::")[1] dl.get(file, dataset=path) return pj.load_json_dict(file)[sub_key] def drop_record(path, meas_path): file = meas_path.split("::")[0] sub_key = meas_path.split("::")[1] dl.unlock(path + '/backlogger.db', dataset=path) conn = sqlite3.connect(path + '/backlogger.db') c = conn.cursor() if c.execute("SELECT * FROM backlogs WHERE path = ?", (meas_path, )).fetchone() is not None: c.execute("DELETE FROM backlogs WHERE path = ?", (meas_path, )) else: raise ValueError("This measurement does not exist as an entry!") conn.commit() known_meas = pj.load_json_dict(file) if sub_key in known_meas: del known_meas[sub_key] dl.unlock(file, dataset=path) pj.dump_dict_to_json(known_meas, file) dl.save([path + '/backlogger.db', file], message="Drop measurements to database", dataset=path) return else: raise ValueError("This measurement does not exist as a file!")