correct typing errors

corrlib/main.py

@@ -6,7 +6,7 @@ from .git_tools import move_submodule
 import shutil
 from .find import _project_lookup_by_id
 from .tools import list2str, str2list
-from .tracker import get_file
+from .tracker import get
 from typing import Union, Optional
 
 
@@ -26,7 +26,7 @@ def create_project(path: str, uuid: str, owner: Union[str, None]=None, tags: Uni
         The code that was used to create the measurements.
     """
     db = path + "/backlogger.db"
-    get_file(path, "backlogger.db")
+    get(path, "backlogger.db")
     conn = sqlite3.connect(db)
     c = conn.cursor()
     known_projects = c.execute("SELECT * FROM projects WHERE id=?", (uuid,))
@@ -47,7 +47,7 @@ def create_project(path: str, uuid: str, owner: Union[str, None]=None, tags: Uni
 
 
 def update_project_data(path: str, uuid: str, prop: str, value: Union[str, None] = None) -> None:
-    get_file(path, "backlogger.db")
+    get(path, "backlogger.db")
     conn = sqlite3.connect(os.path.join(path, "backlogger.db"))
     c = conn.cursor()
     c.execute(f"UPDATE projects SET '{prop}' = '{value}' WHERE id == '{uuid}'")
@@ -58,7 +58,7 @@ def update_project_data(path: str, uuid: str, prop: str, value: Union[str, None]
 
 def update_aliases(path: str, uuid: str, aliases: list[str]) -> None:
     db = os.path.join(path, "backlogger.db")
-    get_file(path, "backlogger.db")
+    get(path, "backlogger.db")
     known_data = _project_lookup_by_id(db, uuid)[0]
     known_aliases = known_data[1]
 
@@ -123,7 +123,7 @@ def import_project(path: str, url: str, owner: Union[str, None]=None, tags: Opti
         raise ValueError("The dataset does not have a uuid!")
     if not os.path.exists(path + "/projects/" + uuid):
         db = path + "/backlogger.db"
-        get_file(path, "backlogger.db")
+        get(path, "backlogger.db")
         dl.unlock(db, dataset=path)
         create_project(path, uuid, owner, tags, aliases, code)
         move_submodule(path, 'projects/tmp', 'projects/' + uuid)

corrlib/tools.py

@@ -1,5 +1,6 @@
 import os
 from configparser import ConfigParser
+from typing import Any
 
 
 def str2list(string: str) -> list[str]:
@@ -19,7 +20,7 @@ def k2m(k: float) -> float:
     return (1/(2*k))-4
 
 
-def set_config(path, section, option, value):
+def set_config(path: str, section: str, option: str, value: Any) -> None:
     config_path = os.path.join(path, '.corrlib')
     config = ConfigParser()
     if os.path.exists(config_path):

corrlib/tracker.py

@@ -15,7 +15,7 @@ def get_tracker(path: str) -> str:
 def get(path: str, file: str) -> None:
     tracker = get_tracker(path)
     if tracker == 'datalad':
-        dl.get_file(path, file)
+        dl.get(path, file)
     else:
         raise ValueError(f"Tracker {tracker} is not supported.")
     return
@@ -24,7 +24,7 @@ def get(path: str, file: str) -> None:
 def save(path: str, message: str, files: list[str]) -> None:
     tracker = get_tracker(path)
     if tracker == 'datalad':
-        dl.save(files, message=message, dataset=path)
+        dl.save(path, message, files)
     else:
         raise ValueError(f"Tracker {tracker} is not supported.")
 

corrlib/trackers/datalad.py

@@ -1,17 +1,19 @@
 import datalad.api as dl
 import os
+from typing import Optional
 
 
-def get(path, file):
+def get(path: str, file: str) -> None:
     if file == "backlogger.db":
         print("Downloading database...")
     else:
         print("Downloading data...")
     dl.get(os.path.join(path, file), dataset=path)
     print("> downloaded file")
+    return
 
 
-def save(path, message, files= None):
+def save(path: str, message: str, files: Optional[list[str]]=None) -> None:
     if files is None:
         files = path
     else:
@@ -20,6 +22,6 @@ def save(path, message, files= None):
     return
 
 
-def create(path):
+def create(path: str) -> None:
     dl.create(path)
     return