From 854431997e70147c5f3230421c80829669152585 Mon Sep 17 00:00:00 2001
From: Justus Kuhlmann <justus@kuhl-mann.de>
Date: Tue, 2 Dec 2025 12:36:03 +0100
Subject: [PATCH] add mypy

---
 pyproject.toml | 11 +++++++++--
 uv.lock        | 25 +++++++++++++++++++++++++
 2 files changed, 34 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index ebcc834..faf7e6c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,8 +9,8 @@ dynamic = ["version"]
 dependencies = [
     "gitpython>=3.1.45",
     'pyerrors>=2.11.1',
-    'datalad>=1.1.0',
-    'typer>=0.12.5'
+    "datalad>=1.1.0",
+    'typer>=0.12.5',
 ]
 description = "Python correlation library"
 authors = [
@@ -35,9 +35,16 @@ extend-select = [
   "F",
 ]
 
+[tool.mypy]
+strict = true
+implicit_reexport = false
+follow_untyped_imports = false
+ignore_missing_imports = true
+
 [dependency-groups]
 dev = [
     "mypy>=1.19.0",
+    "pandas-stubs>=2.3.3.251201",
     "pytest>=9.0.1",
     "pytest-cov>=7.0.0",
     "pytest-pretty>=1.3.0",
diff --git a/uv.lock b/uv.lock
index e294cdb..f76ee81 100644
--- a/uv.lock
+++ b/uv.lock
@@ -416,6 +416,7 @@ dependencies = [
 [package.dev-dependencies]
 dev = [
     { name = "mypy" },
+    { name = "pandas-stubs" },
     { name = "pytest" },
     { name = "pytest-cov" },
     { name = "pytest-pretty" },
@@ -433,6 +434,7 @@ requires-dist = [
 [package.metadata.requires-dev]
 dev = [
     { name = "mypy", specifier = ">=1.19.0" },
+    { name = "pandas-stubs", specifier = ">=2.3.3.251201" },
     { name = "pytest", specifier = ">=9.0.1" },
     { name = "pytest-cov", specifier = ">=7.0.0" },
     { name = "pytest-pretty", specifier = ">=1.3.0" },
@@ -1772,6 +1774,20 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/70/44/5191d2e4026f86a2a109053e194d3ba7a31a2d10a9c2348368c63ed4e85a/pandas-2.3.3-cp314-cp314t-musllinux_1_2_x86_64.whl", hash = "sha256:3869faf4bd07b3b66a9f462417d0ca3a9df29a9f6abd5d0d0dbab15dac7abe87", size = 13202175, upload-time = "2025-09-29T23:31:59.173Z" },
 ]
 
+[[package]]
+name = "pandas-stubs"
+version = "2.3.3.251201"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
+    { name = "numpy", version = "2.3.5", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
+    { name = "types-pytz" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/ee/a6/491b2af2cb3ee232765a73fb273a44cc1ac33b154f7745b2df2ee1dc4d01/pandas_stubs-2.3.3.251201.tar.gz", hash = "sha256:7a980f4f08cff2a6d7e4c6d6d26f4c5fcdb82a6f6531489b2f75c81567fe4536", size = 107787, upload-time = "2025-12-01T18:29:22.403Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e2/68/78a3c253f146254b8e2c19f4a4768f272e12ef11001d9b45ec7b165db054/pandas_stubs-2.3.3.251201-py3-none-any.whl", hash = "sha256:eb5c9b6138bd8492fd74a47b09c9497341a278fcfbc8633ea4b35b230ebf4be5", size = 164638, upload-time = "2025-12-01T18:29:21.006Z" },
+]
+
 [[package]]
 name = "pathspec"
 version = "0.12.1"
@@ -2456,6 +2472,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/78/64/7713ffe4b5983314e9d436a90d5bd4f63b6054e2aca783a3cfc44cb95bbf/typer-0.20.0-py3-none-any.whl", hash = "sha256:5b463df6793ec1dca6213a3cf4c0f03bc6e322ac5e16e13ddd622a889489784a", size = 47028, upload-time = "2025-10-20T17:03:47.617Z" },
 ]
 
+[[package]]
+name = "types-pytz"
+version = "2025.2.0.20251108"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/40/ff/c047ddc68c803b46470a357454ef76f4acd8c1088f5cc4891cdd909bfcf6/types_pytz-2025.2.0.20251108.tar.gz", hash = "sha256:fca87917836ae843f07129567b74c1929f1870610681b4c92cb86a3df5817bdb", size = 10961, upload-time = "2025-11-08T02:55:57.001Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/e7/c1/56ef16bf5dcd255155cc736d276efa6ae0a5c26fd685e28f0412a4013c01/types_pytz-2025.2.0.20251108-py3-none-any.whl", hash = "sha256:0f1c9792cab4eb0e46c52f8845c8f77cf1e313cb3d68bf826aa867fe4717d91c", size = 10116, upload-time = "2025-11-08T02:55:56.194Z" },
+]
+
 [[package]]
 name = "typing-extensions"
 version = "4.15.0"