make integrity checks accassible from cli

corrlib/cli.py

@@ -9,7 +9,7 @@ from .tools import str2list
 from .main import update_aliases
 from .meas_io import drop_cache as mio_drop_cache
 from .meas_io import load_record as mio_load_record
-# from .integrity import 
+from .integrity import full_integrity_check
 
 import os
 from pyerrors import Corr
@@ -146,15 +146,8 @@ def check(path: Path = typer.Option(
         "--dataset",
         "-d",
         ),
-    files: str = typer.Argument(
+    ) -> None:
-        ),
+    full_integrity_check(path)
-    copy_file: bool = typer.Option(
-        bool(True),
-        "--save",
-        "-s",
-        ),) -> None:
-
-    "✅" : "❌"
 
 
 @app.command()

corrlib/integrity.py

@@ -27,19 +27,21 @@ def are_keys_unique(db: Path, table: str, col: str) -> bool:
 def check_db_integrity(path: Path) -> None:
     db = get_db_file(path)
 
-    if not are_keys_unique(db, 'backlogs', 'path'):
+    if not are_keys_unique(path / db, 'backlogs', 'path'):
         raise Exception("The paths the backlog table of the database links are not unique.")
 
     search_expr = "SELECT * FROM 'backlogs'"
-    conn = sqlite3.connect(db)
+    conn = sqlite3.connect(path / db)
     results = pd.read_sql(search_expr, conn)
 
     for _, result in results.iterrows():
         if not has_valid_times(result):
             raise ValueError(f"Result with id {result[id]} has wrong time signatures.")
-
+    print("DB:\t✅")
 
 
 def full_integrity_check(path: Path) -> None:
     check_db_integrity(path)
+    print("Full:\t✅")
+